From 8854691356ae329df5758223fe31ea683544e212 Mon Sep 17 00:00:00 2001 From: Joachim Fasting Date: Sat, 21 Mar 2015 21:28:11 +0100 Subject: [PATCH 01/90] picolisp: re-define using mkDerivation Retains the old install script, with two exceptions: - Generates a custom pil wrapper; the existing wrapper inexplicably fails to load lib.l - Installs emacs lisp into share/emacs/site-lisp, so that it gets installed into the user's environment. --- .../interpreters/picolisp/default.nix | 80 +++++++------------ 1 file changed, 29 insertions(+), 51 deletions(-) diff --git a/pkgs/development/interpreters/picolisp/default.nix b/pkgs/development/interpreters/picolisp/default.nix index ddb2a26bab2..c263611bde2 100644 --- a/pkgs/development/interpreters/picolisp/default.nix +++ b/pkgs/development/interpreters/picolisp/default.nix @@ -1,66 +1,44 @@ -x@{builderDefsPackage - , jdk /* only used in bootstrap */ - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchurl, jdk }: +with stdenv.lib; - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - baseName="picolisp"; - tarballBaseName="picoLisp"; - version="3.1.9"; - name="${baseName}-${version}"; - tarballName="${tarballBaseName}-${version}"; - extension="tgz"; - url="http://www.software-lab.de/${tarballName}.${extension}"; - sha256="1rhfd743ga9qsgn4h2aw1xcgrc7amsllli2zqg8cgm408vxkr6j1"; +stdenv.mkDerivation rec { + name = "picoLisp-${version}"; + version = "3.1.9"; + src = fetchurl { + url = "http://www.software-lab.de/${name}.tgz"; + sha256 = "1rhfd743ga9qsgn4h2aw1xcgrc7amsllli2zqg8cgm408vxkr6j1"; }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.sha256; - }; - - inherit (sourceInfo) name version; - inherit buildInputs; - - /* doConfigure should be removed if not needed */ - phaseNames = ["doMake" "doDeploy"]; - - goSrcDir = if a.stdenv.system == "x86_64-linux" then - "cd src64" else "cd src"; - makeFlags = [''PREFIX=$out'']; - - doDeploy = a.fullDepEntry ('' + buildInputs = [ jdk ]; + sourceRoot = ''picoLisp/src${optionalString stdenv.is64bit "64"}''; + installPhase = '' cd .. - sed -e "s@/usr/@$out/@g" -i bin/pil - mkdir -p "$out/share/picolisp" "$out/lib" "$out/bin" cp -r . "$out/share/picolisp/build-dir" ln -s "$out/share/picolisp/build-dir" "$out/lib/picolisp" ln -s "$out/lib/picolisp/bin/picolisp" "$out/bin/picolisp" - '') ["minInit" "defEnsureDir" "doMake"]; - + + cat >"$out/bin/pil" < Date: Sat, 25 Apr 2015 19:04:40 +0200 Subject: [PATCH 02/90] picolisp: 3.1.9 -> 3.1.10 --- pkgs/development/interpreters/picolisp/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/interpreters/picolisp/default.nix b/pkgs/development/interpreters/picolisp/default.nix index c263611bde2..fdeb950bcfd 100644 --- a/pkgs/development/interpreters/picolisp/default.nix +++ b/pkgs/development/interpreters/picolisp/default.nix @@ -3,10 +3,10 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "picoLisp-${version}"; - version = "3.1.9"; + version = "3.1.10"; src = fetchurl { url = "http://www.software-lab.de/${name}.tgz"; - sha256 = "1rhfd743ga9qsgn4h2aw1xcgrc7amsllli2zqg8cgm408vxkr6j1"; + sha256 = "1pn5c0d81rz1fazsdijhw4cqybaad2wn6qramdj2qqkzxa3vvll1"; }; buildInputs = [ jdk ]; sourceRoot = ''picoLisp/src${optionalString stdenv.is64bit "64"}''; From f49d2e9953c1473fa6e58d2cae043099f57e617d Mon Sep 17 00:00:00 2001 From: Matthias Beyer Date: Sun, 17 May 2015 19:34:16 +0200 Subject: [PATCH 03/90] Fix: khal 0.4.0 does not work with python 3 --- pkgs/top-level/all-packages.nix | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index bdc4c643c04..5ed23b48983 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -11390,9 +11390,7 @@ let keymon = callPackage ../applications/video/key-mon { }; - khal = callPackage ../applications/misc/khal { - pythonPackages = python3Packages; - }; + khal = callPackage ../applications/misc/khal { }; kid3 = callPackage ../applications/audio/kid3 { qt = qt4; From 6686914d714666be9bf4a64a42ef1307bc67ce50 Mon Sep 17 00:00:00 2001 From: Arseniy Seroka Date: Tue, 7 Apr 2015 16:11:59 +0300 Subject: [PATCH 04/90] CONTRIBUTING.md: initial --- CONTRIBUTING.md | 68 +++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 68 insertions(+) create mode 100644 CONTRIBUTING.md diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 00000000000..519b2180b01 --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,68 @@ +# How to contribute + +## Opening issues + +* Make sure you have a [GitHub account](https://github.com/signup/free) +* Submit a ticket for your issue, assuming one does not already exist. + * Clearly describe the issue including steps to reproduce when it is a bug. + +## Making patches + +* Read [Manual (How to write packages for Nix)](https://nixos.org/nixpkgs/manual/) +* Fork the repository on GitHub. +* Create a branch for your future fix. + * You can make branch from a commit of your local `nixos-version`. That will help you to avoid additional local compilations. Because you will recieve some packages from cache server. + * For example: `nixos-version` returns `15.05.git.0998212 (Dingo)`. So you can do: + + ```bash + git checkout 0998212 + git checkout -b 'fix/pkg-name-update' + ``` + * Please avoid working directly on the `master` branch. +* Make commits of logical units. + * If you removed pkgs, made some major changes etc., write about them in `nixos/doc/manual/release-notes/rl-unstable.xml`. +* Check for unnecessary whitespace with `git diff --check` before committing. +* Format the commit in a following way: + + ``` + (pkg-name | service-name): (update from -> to | init at version | refactor | etc) + + Additional information. + ``` + * Examples: + * `foo-pkg: init at 2.0.1` + * `bar-pkg: update 3.0 -> 3.1.1` + * `lala-service: add bazBaz option` + * `tata-service: refactor config generation` +* Test your changes. If you work with + * nixpkgs + * update pkg -> + * `nix-env -i pkg-name -f ` + * add pkg -> + * Make sure it's in `pkgs/top-level/all-packages.nix` + * `nix-env -i pkg-name -f ` + * _If you don't want to install pkg in you profile_. + * `nix-build -A pkg-attribute-name /default.nix` and check results in the folder `result`. It will appear in the same directory where you did `nix-build`. + * If you did `nix-env -i pkg-name` you can do `nix-env -e pkg-name` to uninstall it from your system. + * nixos and it's modules + * You can add new module to you `nixos-configuration file` (usually it's `/etc/nixos/configuration.nix`. + And do `sudo nixos-rebuild test -I nixpkgs= --fast` +* If you have commits `pkg-name: oh, forgot to insert whitespace`: squash commits in this case. Use `git rebase -i`. +* Rebase you branch against current `master`. + +## Submitting changes + +* Push your changes to your fork of nixpkgs. +* Create pull request. + * Write the title in format `(pkg-name | service): improvement` + * If you update the pkg, write versions `from -> to` + * Write in comment if you have tested your patch. Do not rely much on `TravisCL`. + * If you make an improvement, write why is it good. + * Notify maintainers of the package. For example add to the message: `cc @jagajaga @domenkozar` + +## Hotfixing pull requests + +* Make the appropriate changes in you branch. +* Don't create additional commits. + * `git rebase` + * `git push --force` to your branch. From b5019ffd72b9352c92727e161aa617ddc9480d41 Mon Sep 17 00:00:00 2001 From: Jascha Geerds Date: Sat, 30 May 2015 00:53:22 +0200 Subject: [PATCH 05/90] vdirsyncer: Use python2 instead of python3 --- pkgs/top-level/all-packages.nix | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 5ed23b48983..274a764af55 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -12432,9 +12432,7 @@ let vcprompt = callPackage ../applications/version-management/vcprompt { }; - vdirsyncer = callPackage ../tools/misc/vdirsyncer { - pythonPackages = python3Packages; - }; + vdirsyncer = callPackage ../tools/misc/vdirsyncer { }; vdpauinfo = callPackage ../tools/X11/vdpauinfo { }; From 2a0b05a238ad658dfec68d14ce5a55b9b58643cd Mon Sep 17 00:00:00 2001 From: Jascha Geerds Date: Sat, 30 May 2015 01:03:48 +0200 Subject: [PATCH 06/90] vdirsyncer: Propagate dependencies and use requests2 --- pkgs/tools/misc/vdirsyncer/default.nix | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/pkgs/tools/misc/vdirsyncer/default.nix b/pkgs/tools/misc/vdirsyncer/default.nix index 5312445563a..bd3716af2b2 100644 --- a/pkgs/tools/misc/vdirsyncer/default.nix +++ b/pkgs/tools/misc/vdirsyncer/default.nix @@ -10,10 +10,9 @@ pythonPackages.buildPythonPackage rec { sha256 = "0jrxmq8lq0dvqflmh42hhyvc3jjrg1cg3gzfhdcsskj9zz0m6wai"; }; - pythonPath = with pythonPackages; [ + propagatedBuildInputs = with pythonPackages; [ icalendar click - requests lxml setuptools requests_toolbelt From 446c9fefffd2de6c62c254b249d927d6ad16114f Mon Sep 17 00:00:00 2001 From: Jascha Geerds Date: Sat, 30 May 2015 01:04:56 +0200 Subject: [PATCH 07/90] khal: Add sqlite3 to dependencies --- pkgs/applications/misc/khal/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/applications/misc/khal/default.nix b/pkgs/applications/misc/khal/default.nix index 85720f64483..4d09951060f 100644 --- a/pkgs/applications/misc/khal/default.nix +++ b/pkgs/applications/misc/khal/default.nix @@ -22,6 +22,7 @@ pythonPackages.buildPythonPackage rec { requests_toolbelt tzlocal urwid + python.modules.sqlite3 ]; meta = { From 2e583a4963f03429ca5984946d1e7cad4326553b Mon Sep 17 00:00:00 2001 From: Jascha Geerds Date: Sat, 30 May 2015 01:26:29 +0200 Subject: [PATCH 08/90] Add jgeerds to maintainers of khal and vdirsyncer --- pkgs/applications/misc/khal/default.nix | 7 +++---- pkgs/tools/misc/vdirsyncer/default.nix | 11 +++++------ 2 files changed, 8 insertions(+), 10 deletions(-) diff --git a/pkgs/applications/misc/khal/default.nix b/pkgs/applications/misc/khal/default.nix index 4d09951060f..7f7f1308eb1 100644 --- a/pkgs/applications/misc/khal/default.nix +++ b/pkgs/applications/misc/khal/default.nix @@ -25,11 +25,10 @@ pythonPackages.buildPythonPackage rec { python.modules.sqlite3 ]; - meta = { + meta = with stdenv.lib; { homepage = http://lostpackets.de/khal/; description = "CLI calendar application"; - license = stdenv.lib.licenses.mit; - maintainers = with stdenv.lib.maintainers; [ matthiasbeyer ]; + license = licenses.mit; + maintainers = with maintainers; [ matthiasbeyer jgeerds ]; }; } - diff --git a/pkgs/tools/misc/vdirsyncer/default.nix b/pkgs/tools/misc/vdirsyncer/default.nix index bd3716af2b2..86e424ad08b 100644 --- a/pkgs/tools/misc/vdirsyncer/default.nix +++ b/pkgs/tools/misc/vdirsyncer/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, pythonPackages }: +{ stdenv, fetchurl, pythonPackages }: pythonPackages.buildPythonPackage rec { version = "0.4.3"; @@ -20,12 +20,11 @@ pythonPackages.buildPythonPackage rec { atomicwrites ]; - meta = { + meta = with stdenv.lib; { homepage = https://github.com/untitaker/vdirsyncer; description = "Synchronize calendars and contacts"; - maintainers = [ lib.maintainers.matthiasbeyer ]; - platforms = lib.platforms.all; - license = lib.licenses.mit; + maintainers = with maintainers; [ matthiasbeyer jgeerds ]; + platforms = platforms.all; + license = licenses.mit; }; } - From 3859f7bdabe8ec56c1eef832bd5b74280d8298e1 Mon Sep 17 00:00:00 2001 From: Charles Strahan Date: Thu, 22 Jan 2015 18:10:08 -0500 Subject: [PATCH 09/90] haskell-ng: hoogleLocal support --- pkgs/development/haskell-modules/default.nix | 1 + .../haskell-modules/hoogle-local-wrapper.sh | 6 + pkgs/development/haskell-modules/hoogle.nix | 107 ++++++++++++++++++ pkgs/development/haskell-modules/lib.nix | 6 + .../haskell-modules/with-packages-wrapper.nix | 9 +- 5 files changed, 126 insertions(+), 3 deletions(-) create mode 100644 pkgs/development/haskell-modules/hoogle-local-wrapper.sh create mode 100644 pkgs/development/haskell-modules/hoogle.nix diff --git a/pkgs/development/haskell-modules/default.nix b/pkgs/development/haskell-modules/default.nix index 62d74b0ac7d..04158ae8e9b 100644 --- a/pkgs/development/haskell-modules/default.nix +++ b/pkgs/development/haskell-modules/default.nix @@ -56,6 +56,7 @@ let ghcWithPackages = pkgs: callPackage ./with-packages-wrapper.nix { inherit (self) llvmPackages; + haskellPackages = self; packages = pkgs self; }; diff --git a/pkgs/development/haskell-modules/hoogle-local-wrapper.sh b/pkgs/development/haskell-modules/hoogle-local-wrapper.sh new file mode 100644 index 00000000000..13ea889119c --- /dev/null +++ b/pkgs/development/haskell-modules/hoogle-local-wrapper.sh @@ -0,0 +1,6 @@ +#! @shell@ + +COMMAND=$1 +shift +HOOGLE_DOC_PATH=@out@/share/hoogle/doc exec @hoogle@/bin/hoogle \ + "$COMMAND" -d @out@/share/hoogle "$@" diff --git a/pkgs/development/haskell-modules/hoogle.nix b/pkgs/development/haskell-modules/hoogle.nix new file mode 100644 index 00000000000..822c2bdd82e --- /dev/null +++ b/pkgs/development/haskell-modules/hoogle.nix @@ -0,0 +1,107 @@ +# Install not only the Hoogle library and executable, but also a local Hoogle +# database which provides "Source" links to all specified 'packages' -- or the +# current Haskell Platform if no custom package set is provided. +# +# It is intended to be used in config.nix similarly to: +# +# { packageOverrides = pkgs: rec { +# +# haskellPackages = +# let callPackage = pkgs.lib.callPackageWith haskellPackages; +# in pkgs.recurseIntoAttrs (pkgs.haskellPackages.override { +# extension = self: super: { +# hoogleLocal = pkgs.haskellPackages.hoogleLocal.override { +# packages = with pkgs.haskellPackages; [ +# mmorph +# monadControl +# ]; +# }; +# }; +# }); +# }} +# +# This will build mmorph and monadControl, and have the hoogle installation +# refer to their documentation via symlink so they are not garbage collected. + +{ stdenv, hoogle, rehoo +, ghc, packages ? [ ghc.ghc ] +}: + +let + inherit (stdenv.lib) optional; + wrapper = ./hoogle-local-wrapper.sh; +in +stdenv.mkDerivation { + name = "hoogle-local-0.1"; + buildInputs = [hoogle rehoo]; + + phases = [ "installPhase" ]; + + docPackages = packages; + installPhase = '' + if [ -z "$docPackages" ]; then + echo "ERROR: The packages attribute has not been set" + exit 1 + fi + + mkdir -p $out/share/hoogle/doc + export HOOGLE_DOC_PATH=$out/share/hoogle/doc + + cd $out/share/hoogle + + function import_dbs() { + find $1 -name '*.txt' | while read f; do + newname=$(basename "$f" | tr '[:upper:]' '[:lower:]') + if [[ -f $f && ! -f ./$newname ]]; then + cp -p $f ./$newname + hoogle convert -d "$(dirname $f)" "./$newname" + fi + done + } + + for i in $docPackages; do + findInputs $i docPackages propagated-native-build-inputs + findInputs $i docPackages propagated-build-inputs + done + + for i in $docPackages; do + if [[ ! $i == $out ]]; then + for docdir in $i/share/doc/*-ghc-*/* $i/share/doc/*; do + if [[ -d $docdir ]]; then + import_dbs $docdir + ln -sf $docdir $out/share/hoogle/doc + fi + done + fi + done + + import_dbs ${ghc}/share/doc/ghc*/html/libraries + ln -sf ${ghc}/share/doc/ghc*/html/libraries/* $out/share/hoogle/doc + + chmod 644 *.hoo *.txt + rehoo -j4 -c64 . + + rm -fr downloads *.dep *.txt + mv default.hoo x || exit 0 + rm -f *.hoo + mv x default.hoo || exit 1 + + if [ ! -f default.hoo ]; then + echo "Unable to build the default Hoogle database" + exit 1 + fi + + mkdir -p $out/bin + substitute ${wrapper} $out/bin/hoogle \ + --subst-var out --subst-var-by shell ${stdenv.shell} \ + --subst-var-by hoogle ${hoogle} + chmod +x $out/bin/hoogle + ''; + + meta = { + description = "A local Hoogle database"; + platforms = ghc.meta.platforms; + hydraPlatforms = with stdenv.lib.platforms; none; + maintainers = with stdenv.lib.maintainers; [ ttuegel ]; + }; +} diff --git a/pkgs/development/haskell-modules/lib.nix b/pkgs/development/haskell-modules/lib.nix index 9b47b047bf6..9ee12cdde37 100644 --- a/pkgs/development/haskell-modules/lib.nix +++ b/pkgs/development/haskell-modules/lib.nix @@ -79,4 +79,10 @@ rec { triggerRebuild = drv: i: overrideCabal drv (drv: { postUnpack = ": trigger rebuild ${toString i}"; }); + withHoogle = haskellEnv: with haskellEnv.haskellPackages; + import ./hoogle.nix { + inherit (pkgs) stdenv; + inherit hoogle rehoo ghc; + packages = haskellEnv.paths; + }; } diff --git a/pkgs/development/haskell-modules/with-packages-wrapper.nix b/pkgs/development/haskell-modules/with-packages-wrapper.nix index 4362bacb9ee..740047e2c27 100644 --- a/pkgs/development/haskell-modules/with-packages-wrapper.nix +++ b/pkgs/development/haskell-modules/with-packages-wrapper.nix @@ -1,6 +1,7 @@ { stdenv, lib, ghc, llvmPackages, packages, buildEnv, makeWrapper , ignoreCollisions ? false, withLLVM ? false , postBuild ? "" +, haskellPackages }: # This wrapper works only with GHC 6.12 or later. @@ -94,7 +95,9 @@ buildEnv { ${lib.optionalString hasLibraries "$out/bin/${ghcCommand}-pkg recache"} $out/bin/${ghcCommand}-pkg check '' + postBuild; -} // { - preferLocalBuild = true; - inherit (ghc) version meta; + passthru = { + preferLocalBuild = true; + inherit (ghc) version meta; + inherit haskellPackages; + }; } From 9bb5e7edbdbe4631a4129f3fc0da2d52c30cd9bd Mon Sep 17 00:00:00 2001 From: Nikolay Amiantov Date: Fri, 12 Jun 2015 03:39:48 +0300 Subject: [PATCH 10/90] generate-cran-packages: make executable --- pkgs/development/r-modules/generate-cran-packages.R | 2 ++ 1 file changed, 2 insertions(+) mode change 100644 => 100755 pkgs/development/r-modules/generate-cran-packages.R diff --git a/pkgs/development/r-modules/generate-cran-packages.R b/pkgs/development/r-modules/generate-cran-packages.R old mode 100644 new mode 100755 index 3510a2fa92c..ad6c103513f --- a/pkgs/development/r-modules/generate-cran-packages.R +++ b/pkgs/development/r-modules/generate-cran-packages.R @@ -1,3 +1,5 @@ +#!/usr/bin/env Rscript + library(data.table) library(parallel) cl <- makeCluster(10) From 29779ae6425e2e6d5f4cbe0671243b6b85e853b4 Mon Sep 17 00:00:00 2001 From: Nikolay Amiantov Date: Fri, 12 Jun 2015 03:41:13 +0300 Subject: [PATCH 11/90] R: regenerate CRAN packages --- pkgs/development/r-modules/cran-packages.nix | 1035 ++++++++++-------- 1 file changed, 583 insertions(+), 452 deletions(-) diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 79770b6a620..77c075397e1 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -17,9 +17,9 @@ ADDT = derive { name="ADDT"; version="1.0"; sha256="1jx7rxi0yfn34pf3cf9zpf434rap ADGofTest = derive { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; ADM3 = derive { name="ADM3"; version="1.3"; sha256="1hg9wjdhckilqd13dr4cim4j6jsh2sdwm18i3pfmfdj8cyswm3h0"; depends=[]; }; ADPclust = derive { name="ADPclust"; version="0.6.3"; sha256="0lr4zkjhqr9azqxnxpxp9i0ppn8wi8ndb61ki7h2dzfgv27fingk"; depends=[dplyr cluster fields knitr]; }; -AER = derive { name="AER"; version="1.2-3"; sha256="0823zjpl0b7fzhszi28lg1paa41vbxq2xpjil1d4f6dxdysalxlx"; depends=[car lmtest sandwich survival zoo Formula]; }; +AER = derive { name="AER"; version="1.2-4"; sha256="0cfhnh6ijwvbywk6falfq852jgx969v35j2l1q3cghwj9yggapbh"; depends=[car lmtest sandwich survival zoo Formula]; }; AFLPsim = derive { name="AFLPsim"; version="0.3-4"; sha256="0xqp1d3cn8rcrsx0yipqh0k4xynv446acxpcammbflsz01xsgx9v"; depends=[adegenet introgress]; }; -AGD = derive { name="AGD"; version="0.32"; sha256="1jjkclqylh43vm1bj1g4cml7a84sxdl94kmhxgmk04rdkmgf8c47"; depends=[gamlss gamlss_dist]; }; +AGD = derive { name="AGD"; version="0.35"; sha256="1dk8m3zqvapwhz0677d3b2cbrin14p9adn5annzgjrxgw7ms4mg0"; depends=[gamlss gamlss_dist]; }; AGSDest = derive { name="AGSDest"; version="2.2"; sha256="00kf786i72bc4a80qswq1iazwqi709pxvzadgfih511plgir6ik2"; depends=[ldbounds]; }; AICcmodavg = derive { name="AICcmodavg"; version="2.0-3"; sha256="1a9jbf3vd77hsf98smjgqchhkc9z8qqp12c1mflln3l0pxx0vk8q"; depends=[lattice MASS Matrix nlme unmarked VGAM xtable]; }; AID = derive { name="AID"; version="1.5"; sha256="0fpgq2ahl0mdj0sb0p39z2ksslsiwm3hma8d09jmggi3yjbrgqq7"; depends=[MASS tseries nortest]; }; @@ -34,11 +34,13 @@ AMGET = derive { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy4 AMOEBA = derive { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[snowfall rlecuyer spdep]; }; AMORE = derive { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; }; AOfamilies = derive { name="AOfamilies"; version="1.01"; sha256="0v3b83k12lsrdcrkjl2ff38d0g8sbrnm5pmm9xphyrk3lfgap76k"; depends=[lqmm quantreg]; }; +APSIM = derive { name="APSIM"; version="0.8.0"; sha256="0ph4wl6c9jy2w0w3yh8ba12nqbsldicpn2aii675vrvdrx36vwn7"; depends=[data_table lubridate stringr plyr sirad]; }; APSIMBatch = derive { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; AR1seg = derive { name="AR1seg"; version="1.0"; sha256="0v9adx5wj9r4jwl3bqqmj0byiqfp585jz013qfqrq601wj8v4zi3"; depends=[Segmentor3IsBack]; }; ARPobservation = derive { name="ARPobservation"; version="1.1"; sha256="1cdhn11jf1nf03jyvs17ygmjq9pb5rvmyyrq9fp7ifmvcgbkwsms"; depends=[]; }; +ARTIVA = derive { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[MASS igraph gplots]; }; ARTP = derive { name="ARTP"; version="2.0.4"; sha256="1f6ay9lyaqsc33b0larb8v6imp5adaycya84wif2sg32rv4gx3yl"; depends=[]; }; -ARTool = derive { name="ARTool"; version="0.9.3"; sha256="188k3whgm93jm2kpvh711d4l73gickn9iwidz95srwdcdlf9cf1y"; depends=[lme4 car plyr pbkrtest]; }; +ARTool = derive { name="ARTool"; version="0.9.5"; sha256="1wfan4v3498libqgjdgn4l4ihf1khp3smj0lmyxd7vb4iaawlzci"; depends=[lme4 car plyr pbkrtest]; }; ASMap = derive { name="ASMap"; version="0.4-1"; sha256="0nslmzhf99vl1zkp702xgcrd36xvis45yb5b0hx0mvf4dfv233lm"; depends=[qtl gtools fields lattice]; }; ASPBay = derive { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp Rcpp RcppArmadillo]; }; ATE = derive { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; @@ -68,13 +70,14 @@ AnglerCreelSurveySimulation = derive { name="AnglerCreelSurveySimulation"; versi AnnotLists = derive { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; }; AntWeb = derive { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[rjson plyr assertthat httr leafletR]; }; AnthropMMD = derive { name="AnthropMMD"; version="0.9.9"; sha256="10wn0fkcli5yz3fhngsz8sg1mfllqkvjrpjggd9qynay2zrpiw1n"; depends=[tcltk2]; }; -Anthropometry = derive { name="Anthropometry"; version="1.1"; sha256="1yqdps5n07jl05nv7136jwhfndn01vim2kx9s76mk4alvsw7s8ls"; depends=[shapes rgl archetypes nnls depth FNN ICGE cluster biclust]; }; -ApacheLogProcessor = derive { name="ApacheLogProcessor"; version="0.1"; sha256="0wdf9438c5rww0fm5k44ahvivg95vzn3dpnhf4mhpvrjd1am546z"; depends=[foreach doParallel]; }; +Anthropometry = derive { name="Anthropometry"; version="1.2"; sha256="15689jy85kf8j9w8yhffjfjw3lsdlv2w99za32p33shp32f3rvjz"; depends=[shapes rgl archetypes nnls depth FNN ICGE cluster biclust]; }; +ApacheLogProcessor = derive { name="ApacheLogProcessor"; version="0.1.5"; sha256="1xnx6syn365s4w4pks7xq6rng7hk30xln8hvszxwhwfnkzr8qqn2"; depends=[foreach doParallel]; }; AppliedPredictiveModeling = derive { name="AppliedPredictiveModeling"; version="1.1-6"; sha256="004d2k3mhl45inb7kx1ph8xc8h9bgm7f7l3prmvqrl5792400cn4"; depends=[CORElearn MASS plyr reshape2]; }; AquaEnv = derive { name="AquaEnv"; version="1.0-3"; sha256="1hkygw09w70im9f6l6q5yxk86mdl5pkczqfqrwc4wl1yhz7z1gjb"; depends=[minpack_lm deSolve]; }; ArArRedux = derive { name="ArArRedux"; version="0.1"; sha256="1fgll399plraijbh1xrhf1nmc308daqhhsi5krq2lm7q2cn584pc"; depends=[]; }; ArDec = derive { name="ArDec"; version="2.0"; sha256="14niggcq7xlvpdhxhy8j870gb11cpk4rwn9gwsfmcfvh49g58i80"; depends=[]; }; ArfimaMLM = derive { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[lme4 fractal fracdiff]; }; +ArgumentCheck = derive { name="ArgumentCheck"; version="0.9.0"; sha256="1gyc6bx6sfp7k8cp43l6fic4rfn729h6kl5zqs3ypf4425s7jm3f"; depends=[]; }; ArrayBin = derive { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[]; }; AssetPricing = derive { name="AssetPricing"; version="1.0-0"; sha256="12v8hmmknkp472x406zgzwjp7x8sc90byc3s3dvmwd5qhryxkkix"; depends=[polynom deSolve]; }; AssotesteR = derive { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; }; @@ -83,7 +86,7 @@ AtelieR = derive { name="AtelieR"; version="0.24"; sha256="0yialpmbsbx70gvps4r58 AtmRay = derive { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; }; AutoSEARCH = derive { name="AutoSEARCH"; version="1.5"; sha256="1s2ldhxijd8n9ba78faik6gn4f07pdzksy0030pqyafxlr3v1qdj"; depends=[zoo lgarch]; }; B2Z = derive { name="B2Z"; version="1.4"; sha256="0w7394vs883vb32gs6yhrc1kh5406rs851yb2gs8hqzxad1alvpn"; depends=[numDeriv coda mvtnorm]; }; -BACA = derive { name="BACA"; version="0.99.0"; sha256="19n6ajq6szpzwj36lfg7wrh2j3d3ikn13a1j3g2xvfy275qdmmm4"; depends=[ggplot2 rJava]; }; +BACA = derive { name="BACA"; version="1.3"; sha256="1vbip7wbzix1s2izbm4058wmwar7w5rv3q8bmj9pm7hcapfi19k0"; depends=[ggplot2 rJava]; }; BACCO = derive { name="BACCO"; version="2.0-9"; sha256="0i1dnk0g3miyv3b60rzgjjm60180wxzv6v2q477r71q74b0v0r1y"; depends=[emulator calibrator approximator]; }; BACprior = derive { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[mvtnorm leaps boot]; }; BAEssd = derive { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; @@ -113,7 +116,7 @@ BEST = derive { name="BEST"; version="0.2.2"; sha256="160lvrd0zjm1lr8llra6lyz3qs BGLR = derive { name="BGLR"; version="1.0.4"; sha256="1bvk8iifvrcvnb0f1k3v9xxajljsz79ck95191p8alnda64cz0zf"; depends=[]; }; BGPhazard = derive { name="BGPhazard"; version="1.2.2"; sha256="1v89pjigrjkin9vsf6sa0qhwxvn1a3dy2gqwq3sd9v6y0hrld6ng"; depends=[survival]; }; BGSIMD = derive { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; -BH = derive { name="BH"; version="1.55.0-3"; sha256="0p3xbbnj4l844sgg59ply5ng8z42lbs6z8cghsr3bxbbv4w9lkbs"; depends=[]; }; +BH = derive { name="BH"; version="1.58.0-1"; sha256="17rnwyw9ib2pvm60iixzkbz7ff4fslpifp1nlx4czp42hy67kqpf"; depends=[]; }; BHH2 = derive { name="BHH2"; version="2012.04-0"; sha256="10ixvjpkqamlddrndpnw5gsdm4gdhp693jdvc0f774ngmf32rbaa"; depends=[]; }; BHMSMAfMRI = derive { name="BHMSMAfMRI"; version="1.0"; sha256="0j5ivknsr441clgm0b95f2rz4pr29ixvw3dgsi8nb0ffh52dgz7q"; depends=[fmri AnalyzeFMRI wavethresh]; }; BIFIEsurvey = derive { name="BIFIEsurvey"; version="1.2-6"; sha256="1fin5dr1xxr617i4ysfx39gaw6ygbcm4h7j1l38kqnfz18hn6xsq"; depends=[Rcpp miceadds mitools TAM Rcpp RcppArmadillo]; }; @@ -127,11 +130,11 @@ BMS = derive { name="BMS"; version="0.3.3"; sha256="1yj9vi8jvhkwpcjkclf0zbah0day BMhyd = derive { name="BMhyd"; version="1.2-2"; sha256="09gb1pq9y3gq9avpaqrlxdsm9iqsxpbnr0bg2mw1vkhc0d5z8zv7"; depends=[corpcor numDeriv]; }; BNDataGenerator = derive { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; }; BNPTSclust = derive { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[mvtnorm MASS]; }; -BNPdensity = derive { name="BNPdensity"; version="2013.8"; sha256="1qlhav764ji289kcibbmqjj62mmxiw3zsiwjz1gkifzgpmzyar85"; depends=[]; }; -BNSP = derive { name="BNSP"; version="1.0.2"; sha256="0hbrx02mybfrzfab5g7kwi6g68jdzj2dc69zxkn3hpyf4rqwbw4x"; depends=[]; }; +BNPdensity = derive { name="BNPdensity"; version="2015.5"; sha256="0jgdc9dayc57y77bb2yjcn1pb5ahrvbrsmyjkhyl4365sn5njzl8"; depends=[]; }; +BNSP = derive { name="BNSP"; version="1.0.3"; sha256="1q7nxl1lx57dzb5yfpb0966ylyl15x22y9r78r6pxrprrbsnv931"; depends=[]; }; BOG = derive { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[hash DIME]; }; BOIN = derive { name="BOIN"; version="1.1"; sha256="1ffr6w9ml0mkffgg1vds8fmf8ww7rs375pxk2dqv9nlb9061m97r"; depends=[]; }; -BRugs = derive { name="BRugs"; version="0.8-3"; sha256="1qjwm6qizg70nvpl5p2yx65ynghazchqw7d2iadhdjz7dd293sqi"; depends=[coda]; }; +BRugs = derive { name="BRugs"; version="0.8-4"; sha256="0bd5m4nfj25bhjy0d96kna50h5a5a2mdxrl21c1kvxmiwxcx4wrs"; depends=[coda]; }; BSDA = derive { name="BSDA"; version="1.01"; sha256="06mgmwwh56bj27wdya8ln9mr3v5gb6fcca7v9s256k64i19z12yi"; depends=[e1071 lattice]; }; BSGS = derive { name="BSGS"; version="1.0"; sha256="11r7bx9ax84iv3gam02p1hg174ni3d3gv6yj64n0gp2gaj438hv7"; depends=[MASS pscl plyr]; }; BSGW = derive { name="BSGW"; version="0.9"; sha256="0df5d0d0kfvwavxbxra36jjs9044q1szq1xm37dvh4wfvvv6igmb"; depends=[survival]; }; @@ -156,7 +159,7 @@ BayesCR = derive { name="BayesCR"; version="2.0"; sha256="0cafind5vz81ryw1c7324h BayesComm = derive { name="BayesComm"; version="0.1-0"; sha256="17hnq4z451g2j3p73awllihhwsdy3grh6ki3qy9bkr064wvzbvcj"; depends=[Rcpp RcppArmadillo coda Rcpp RcppArmadillo]; }; BayesDA = derive { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; }; BayesFactor = derive { name="BayesFactor"; version="0.9.11-1"; sha256="0vq656q38vlf0ba8g23psk8as1y48y6s8yrvqrppbjx5d9wlm9wv"; depends=[coda Matrix pbapply mvtnorm stringr gtools MatrixModels Rcpp Rcpp RcppEigen]; }; -BayesGESM = derive { name="BayesGESM"; version="1.3"; sha256="0lw593hqava5bhr8nfbh3qw63ilfr06zh58p2rw3nnv1ldrrzncv"; depends=[truncdist GIGrvg normalp Formula]; }; +BayesGESM = derive { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[GIGrvg normalp Formula]; }; BayesLCA = derive { name="BayesLCA"; version="1.7"; sha256="0lsqgjqal9092v1wr07p8g5cqm24k2d80sp7hlr7r1xknakmm1b6"; depends=[e1071 coda fields nlme MCMCpack]; }; BayesLogit = derive { name="BayesLogit"; version="0.5.1"; sha256="0nr215wzhqlfi32617mmqb6i3w5x1kh5fiy68k0xzdqjsyjr65m0"; depends=[]; }; BayesMed = derive { name="BayesMed"; version="1.0.1"; sha256="1ysc7sh0drqxbisi2dz6gj4jlw6qsd879bbhr5pra7nxgmk4h650"; depends=[R2jags QRM polspline MCMCpack]; }; @@ -191,6 +194,7 @@ BinNonNor = derive { name="BinNonNor"; version="1.2"; sha256="15bzpi2q2428661v8z BinNor = derive { name="BinNor"; version="2.0"; sha256="0c1qy93ccgzg8g25wm1j4ninsa0ck4y3jjh25za92w070cqhkd8m"; depends=[mvtnorm corpcor psych Matrix]; }; BinOrdNonNor = derive { name="BinOrdNonNor"; version="1.0"; sha256="1x231xxdiyp6nwj2dx9w1shi5w6mdyzg43g5zc4r2bpvzccgj0l0"; depends=[GenOrd OrdNor BB corpcor Matrix mvtnorm]; }; Binarize = derive { name="Binarize"; version="1.0"; sha256="1yfr87s1hgjhc8ah81sfrgr1hpp0vd5clqayrz1i698h1c34amkh"; depends=[diptest]; }; +BinaryEPPM = derive { name="BinaryEPPM"; version="1.0"; sha256="088yg07966g09gv9hznhwfdka4yk0c9j0viy9x4ldmhxl9w9scv5"; depends=[Formula expm numDeriv]; }; BioGeoBEARS = derive { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[rexpokit cladoRcpp ape phylobase optimx FD xtable plotrix gdata]; }; BioMark = derive { name="BioMark"; version="0.4.2"; sha256="17r4q2migmdk2vqfbr69q07cgdzwpjgs3ijmnm42srs5d3brw8cr"; depends=[pls glmnet MASS st]; }; BioPhysConnectoR = derive { name="BioPhysConnectoR"; version="1.6-10"; sha256="1cc22knlvbvwsrz2a7syk2ampm1ljc44ykv5wf0szhnh75pxg13l"; depends=[snow matrixcalc]; }; @@ -213,7 +217,7 @@ BoomSpikeSlab = derive { name="BoomSpikeSlab"; version="0.5.2"; sha256="0n7kf0nk BootPR = derive { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; }; Boruta = derive { name="Boruta"; version="4.0.0"; sha256="1r7bl4ab6swhks9cijhqn9gdhp2vjfhwb65fi5rzz0yvzxx97xi8"; depends=[randomForest rFerns]; }; BradleyTerry2 = derive { name="BradleyTerry2"; version="1.0-6"; sha256="1080q7fw4yfl2y0jh3w2xz342i5yhhhavq40i3902bsmjj8g531d"; depends=[lme4 brglm gtools]; }; -BrailleR = derive { name="BrailleR"; version="0.18-1"; sha256="0v5y5v6b52kh4146bbhwpsnb5p435dk5nhv28sxi7r89fixbc20q"; depends=[nortest xtable moments knitr gridGraphics gridSVG]; }; +BrailleR = derive { name="BrailleR"; version="0.20"; sha256="1cfg5jfhal77n1pmwcj0awhnprqw6bha7q7z3s2m3q4g1ar49shv"; depends=[knitr gridGraphics gridSVG moments nortest rmarkdown xtable]; }; Brobdingnag = derive { name="Brobdingnag"; version="1.2-4"; sha256="1saxa492f32f511vw0ys55z3kgyzhswxkylw9k9ccl87zgbszf3a"; depends=[]; }; Brq = derive { name="Brq"; version="1.0"; sha256="0m01qw0mh9za1gx1vkbyvwny4k5fvmvs9dbp0504q8jqfqf4l1vj"; depends=[quantreg truncnorm]; }; BsMD = derive { name="BsMD"; version="2013.0718"; sha256="1yvazqlbmm221r7nkhrhi309gkk6vx7ji5xlvf07klya2zg20gcj"; depends=[]; }; @@ -235,14 +239,14 @@ CARrampsOcl = derive { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1 CAvariants = derive { name="CAvariants"; version="2.1"; sha256="105bj6r6i7xz95lr5g4ld9xfgyq1dn15lw117jivx76z3k2zpi59"; depends=[]; }; CBPS = derive { name="CBPS"; version="0.9"; sha256="08pc50fndpx6xvxkvqdklrp6v98w2j387frq08nlglcbfjk22i6x"; depends=[MASS MatchIt nnet numDeriv]; }; CCA = derive { name="CCA"; version="1.2"; sha256="00zy6bln22qshhlll0y0adnvb8wa1f7famqyws71b6pcnwxki5ha"; depends=[fda fields]; }; -CCAGFA = derive { name="CCAGFA"; version="1.0.4"; sha256="159gh0mx4da1gpqf5swyhg8ksclpi59p4zmzsiq5ywfpy5cjr71z"; depends=[]; }; +CCAGFA = derive { name="CCAGFA"; version="1.0.6"; sha256="19il9i7ybjg2qchmpjwkyx48l4fl7lb1zdkfpiaw3fng6ndasp1k"; depends=[]; }; CCM = derive { name="CCM"; version="1.1"; sha256="0gya1109w61ia6cq3jg2z5gmvjkv9xg71l2rxhrrf6bx1c2nsrq6"; depends=[]; }; CCP = derive { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; }; CCTpack = derive { name="CCTpack"; version="1.4"; sha256="09s2ysqsz158lrah44rwvs3nlhyqlvwcj6aar2p79flf4xxdwsvk"; depends=[R2jags rjags psych mvtnorm polycor MASS]; }; CCpop = derive { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; }; CDFt = derive { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27hgr5dw61wp0w5jpwzjz22jzqbap"; depends=[]; }; CDLasso = derive { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; -CDM = derive { name="CDM"; version="4.2-12"; sha256="18ix2l3mlk9vzv7iks16mdi4h0194bfjcvsxmya5219dfmw5vqfz"; depends=[mvtnorm Rcpp psych MASS polycor sfsmisc plyr WrightMap lattice Rcpp RcppArmadillo]; }; +CDM = derive { name="CDM"; version="4.3-0"; sha256="0xryd4l0fqa2m39zcgd6jyi6shlqxc98qgwdpg38csqmbpny4bvm"; depends=[mvtnorm Rcpp psych MASS polycor sfsmisc plyr lattice Rcpp RcppArmadillo]; }; CDNmoney = derive { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDVine = derive { name="CDVine"; version="1.2"; sha256="1qfjbzdfz2dydkfw3b0jjma4csn62177j5sgzh6rszf0nifsi97g"; depends=[MASS mvtnorm igraph]; }; CEC = derive { name="CEC"; version="0.9.3"; sha256="05cgd281p0hxkni4nqb0d4l71aah3f3s6jxdnzgw8lqxaxz4194i"; depends=[]; }; @@ -252,7 +256,7 @@ CFC = derive { name="CFC"; version="0.7.0"; sha256="1sl0gsx4gcbcf7bc6xf84g3lx58z CGP = derive { name="CGP"; version="2.0-2"; sha256="1mggv3c8525vbdfdc3yhpp4vm4zzdvbwyxim29zj0lzwjf9fkgqk"; depends=[]; }; CHAT = derive { name="CHAT"; version="1.1"; sha256="1hl4xr4lkvb7r36gcbgax6ipqc3rsvn1r03w7fk9gf9bbyg7bkhg"; depends=[DPpackage]; }; CHCN = derive { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; }; -CHNOSZ = derive { name="CHNOSZ"; version="1.0.3.1"; sha256="0cmirnb8jkaxnscpkwm2a8yyzl9zaf3q323avpgg7fwwhr6c1l19"; depends=[]; }; +CHNOSZ = derive { name="CHNOSZ"; version="1.0.5"; sha256="19kh4fnf6myn072hrjcibw7bhm4qbjp039vdqjq1qx3bmz28an1k"; depends=[]; }; CHsharp = derive { name="CHsharp"; version="0.3"; sha256="0aa9v6yih6qmqsmc8zsl8k1wqsp3sp2bfwri3d37k06vfj7gwbh0"; depends=[scatterplot3d KernSmooth]; }; CIDnetworks = derive { name="CIDnetworks"; version="0.8.1"; sha256="0k75mdlvm0rccag42pnhsni1kihpqsnj5bsrwlj7hdf7n8k1xb77"; depends=[mvtnorm msm Rcpp igraph numDeriv pbivnorm MASS Rcpp]; }; CIFsmry = derive { name="CIFsmry"; version="1.0.1"; sha256="118vyiiy4iqn86n9xf84n5hrwrhzhr1mdsmyg9sm6qq6dm7zg6la"; depends=[]; }; @@ -265,6 +269,7 @@ CLSOCP = derive { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphj CMC = derive { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; }; CMF = derive { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp Rcpp]; }; CMPControl = derive { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; }; +CMplot = derive { name="CMplot"; version="1.0.1"; sha256="04pkpv0sl0aijp6b4sgn27bq54cn95zazikjlx5pwiyc8p0bzz86"; depends=[]; }; CNOGpro = derive { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; }; CNVassoc = derive { name="CNVassoc"; version="2.1"; sha256="0gwyhipkvvnivdahr9mkj1b8j9wzg6g8mcsvk5rq28xdzrskz0i8"; depends=[CNVassocData mixdist mclust survival]; }; CNVassocData = derive { name="CNVassocData"; version="1.0"; sha256="17r3b1w9i9v6llawnjnrjns6jkd82m2cn9c90aif8j0bf4dmgdli"; depends=[]; }; @@ -275,7 +280,7 @@ COMPoissonReg = derive { name="COMPoissonReg"; version="0.3.4"; sha256="1mf2q7ph COP = derive { name="COP"; version="1.0-2"; sha256="1gynknplvx97hjhi7adsgq9r9lqismch1q1pqvgmz0x1wkg4jj40"; depends=[dr MASS]; }; COPASutils = derive { name="COPASutils"; version="0.1.6"; sha256="0vi7x14ma3i4gabdb04byr4ba0209lklj3d5ql2f2vaxyb4a1hj9"; depends=[ggplot2 reshape2 dplyr kernlab stringr knitr]; }; CORE = derive { name="CORE"; version="3.0"; sha256="0wq9i7nscnzqiqz6zh6hglm7924261bw169q3x6l9i6jgqhvn32d"; depends=[]; }; -CORElearn = derive { name="CORElearn"; version="0.9.45"; sha256="0j2lhzikh96ky4n52x0rwhknx5zdk9h78x9ygzfpr6p9x80w850f"; depends=[cluster rpart]; }; +CORElearn = derive { name="CORElearn"; version="0.9.46"; sha256="1jwc3sqkbhhmn67x44iyqzvpjsnbrwhgq6yam6h6gf086nv0lmic"; depends=[cluster rpart]; }; CORM = derive { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster]; }; COSINE = derive { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[MASS genalg]; }; COUNT = derive { name="COUNT"; version="1.3.2"; sha256="1lb67gwznva5p046f4gjjisip5a12icp7d2g1ipizixw99c5lll8"; depends=[msme sandwich MASS]; }; @@ -288,7 +293,6 @@ CRAC = derive { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rv CRF = derive { name="CRF"; version="0.3-8"; sha256="0w9wfjlx6hvd07k0iszfyip0vn0ca5ax2d5g7hsg6pm2isnzap8a"; depends=[Rglpk Matrix]; }; CRM = derive { name="CRM"; version="1.1.1"; sha256="09h6xvqc2h2gxhdhc7592z93cnw16l549pn9i26ml0f0n20hljmf"; depends=[]; }; CRTSize = derive { name="CRTSize"; version="1.0"; sha256="1d45zx26bf0zk0piham69gvb8djqf48g6iisbldv0ds3s2hhcsin"; depends=[]; }; -CSS = derive { name="CSS"; version="1.0.2"; sha256="0p0c3gfj6p58hd4398kkpjg7rhx6wh5z6qddpqnvbm24acq7nrvh"; depends=[XML stringr]; }; CTT = derive { name="CTT"; version="2.1"; sha256="0v8k54x9pib6hq3nz3m80g1a3p003f7bn8wnj9swwvacc90d6n44"; depends=[]; }; CUMP = derive { name="CUMP"; version="1.0"; sha256="0dbpgm75nbd4h8rf3ca5n4mgdn3qm4yyf2d48vlihakzw6rqbpka"; depends=[]; }; CVST = derive { name="CVST"; version="0.2-1"; sha256="17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"; depends=[kernlab Matrix]; }; @@ -298,8 +302,9 @@ CVcalibration = derive { name="CVcalibration"; version="1.0-1"; sha256="0ca582fn CaDENCE = derive { name="CaDENCE"; version="1.2.2"; sha256="1rbwm3s63dxd366bs7pdxl0zpv7svsfr3ayznach9bjjrnjk3z3g"; depends=[pso]; }; Cairo = derive { name="Cairo"; version="1.5-6"; sha256="0x5xd2xq5q8a3kzmz7f9bawg3j131rhyb3s7w34acg7rd79l1935"; depends=[]; }; CarletonStats = derive { name="CarletonStats"; version="1.1"; sha256="18pd1hi8bnbv0sdixw746xvdg9szvng422yj12mk0k50v60403xg"; depends=[]; }; -CatDyn = derive { name="CatDyn"; version="1.0-6"; sha256="07n7qwpq8b70i2f48npy0pd87w0fj5xzjg00xw53m2idikqf82pn"; depends=[optimx BB]; }; +CatDyn = derive { name="CatDyn"; version="1.1-0"; sha256="0bdixcf1iwbmjd2axi6csrzms25ghdj4r6223qhk2b54wlmbzaiz"; depends=[optimx BB]; }; CateSelection = derive { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; +CausalFX = derive { name="CausalFX"; version="1.0.1"; sha256="0v0diqq9fa1v9n3v5m5shvwlgmj91cbbb78243rwib1h3pyacihf"; depends=[igraph rcdd rje]; }; CausalGAM = derive { name="CausalGAM"; version="0.1-3"; sha256="0g68m2kxixwr7rx65r57m1n0qa161igc428zh9rj91fg6h4pdq4w"; depends=[gam]; }; Causata = derive { name="Causata"; version="4.2-0"; sha256="04lndjy4rdf063z75zv42b000z06ffnr91pv2sql1ks6w60zmh1m"; depends=[XML R_utils rjson RMySQL RCurl stringr yaml boot foreach data_table glmnet ggplot2]; }; CePa = derive { name="CePa"; version="0.5"; sha256="1y2q72j8bqx509i62a2x9j40rj5bkpgx4z6fwj05ibazc1441asd"; depends=[igraph snow]; }; @@ -316,6 +321,7 @@ ChemometricsWithRData = derive { name="ChemometricsWithRData"; version="0.1.3"; ChoiceModelR = derive { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; }; CircE = derive { name="CircE"; version="1.1"; sha256="14bja3zv9wg389m6khmsy3q12hhnfcp49rvrmw47y6fh5m7ihrz2"; depends=[]; }; CircNNTSR = derive { name="CircNNTSR"; version="2.1"; sha256="1rl17kw6bl5xf7pgsc4im12i2kqz4a3b11vzzlb6wfl5yck6iff5"; depends=[]; }; +CircOutlier = derive { name="CircOutlier"; version="3.1.3"; sha256="103d5fbwzbj9ribl2vzrj1lxv0n3hcygjrf5k4kqm0kfnql91k2s"; depends=[CircStats circular]; }; CircStats = derive { name="CircStats"; version="0.2-4"; sha256="1f2pf1ppp843raa82s2qxm3xlcv6zpi578zc4pl0d7qyxqnh603s"; depends=[MASS boot]; }; CityPlot = derive { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; }; Ckmeans_1d_dp = derive { name="Ckmeans.1d.dp"; version="3.3.1"; sha256="0gzwcg6f3p1vr30lyniqiq4893kjxri4y2vjzh6qrldnay42kqf9"; depends=[]; }; @@ -323,12 +329,14 @@ Claddis = derive { name="Claddis"; version="0.1"; sha256="1dxsz62x856lpapw5xpvvr ClickClust = derive { name="ClickClust"; version="1.1.4"; sha256="17r8jzhzwqa5h04bxdcyv31jhk6c709sx5m1z53jh3yf9zmkilvi"; depends=[]; }; ClimClass = derive { name="ClimClass"; version="1.0"; sha256="07jl8vwqyyj4q2hav8qbg69yjs73s3kbms5bd9hqs1y938rrp2l5"; depends=[geosphere ggplot2 reshape2]; }; ClueR = derive { name="ClueR"; version="1.0"; sha256="1ak8pgbzm5xrk7pjnkbiqdwyvvyvrm6k6h50ycc86w3zy7fnqhds"; depends=[e1071]; }; +ClustMMDD = derive { name="ClustMMDD"; version="1.0.1"; sha256="0pzascdiadhvx4xjxa6kjw5kkmj3izphz2f86jnimyn5fid7cl02"; depends=[Rcpp Rcpp]; }; ClustOfVar = derive { name="ClustOfVar"; version="0.8"; sha256="17y8q2g4yjxs2jl1s8n5svxi021nlm0phs1g5hcnfxzpadq84wbs"; depends=[]; }; -ClustVarLV = derive { name="ClustVarLV"; version="1.3.2"; sha256="0lnrpvfkhsmjjaimxqjrvwv4wrh6mxl6ifr9dj1kfkmnparyp6fp"; depends=[Rcpp Rcpp]; }; +ClustVarLV = derive { name="ClustVarLV"; version="1.4.0"; sha256="1dm4vyfq4mf9y2ha32fhirqyss4yjk5zxrb9i3fx4i8kbaw6160z"; depends=[Rcpp Rcpp]; }; CoClust = derive { name="CoClust"; version="0.3-1"; sha256="00i0dghd35s91kkkxj1ywa5i93752mfa5527ifclw4xxxshppva8"; depends=[copula gtools]; }; CoImp = derive { name="CoImp"; version="0.2-3"; sha256="04n0drx98hi8hmlb5xwl87ylv03j1ld04vp9d8s5sphvm9bbx690"; depends=[copula nnet gtools locfit]; }; CoinMinD = derive { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; }; CollocInfer = derive { name="CollocInfer"; version="1.0.1"; sha256="0wfk3qw28msz3wqm5xmivjgi18kqv1s6w76vh71zq777d6a7al6i"; depends=[fda deSolve MASS Matrix spam]; }; +ColorPalette = derive { name="ColorPalette"; version="1.0-0"; sha256="0mh1fjcl80fc5prrypl42aqj1svzs6600n250a5sah276bd0zzk9"; depends=[]; }; CombMSC = derive { name="CombMSC"; version="1.4.2"; sha256="1wkawxisn9alpwrymja8dla8n25z2fhai3l2xhin0b914y2kai09"; depends=[]; }; CombinS = derive { name="CombinS"; version="1.1"; sha256="18wanir5vqk5i65hd6gr2za1xd26yfa0c3c029dbxsrsczwmb9xi"; depends=[]; }; CombinePValue = derive { name="CombinePValue"; version="1.0"; sha256="0mlngyz2nq7s39javnnjbb5db93c5sg9daw2szng83mbyfza4hv2"; depends=[]; }; @@ -355,7 +363,7 @@ Copula_Markov = derive { name="Copula.Markov"; version="1.0"; sha256="028rmpihyz CopulaREMADA = derive { name="CopulaREMADA"; version="0.5-1"; sha256="1lrqx07986f7cv0ws1dd9p0dza0qkc67p8mp7rdq58b9f1h7yk2r"; depends=[statmod]; }; CopulaRegression = derive { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; }; CopyDetect = derive { name="CopyDetect"; version="1.1"; sha256="0h9bf7ay5yr6dwk7q28b6xxfzy6smljkq6qwjkzfscy5hnmwxkpa"; depends=[irtoys]; }; -CorReg = derive { name="CorReg"; version="1.0"; sha256="061lb443wydlrgrnrpi9ibrwa0xw328wcyhsx7lndzjrni9mhcbp"; depends=[Rcpp lars Rmixmod elasticnet corrplot Matrix ridge rpart MASS mvtnorm mclust Rcpp RcppEigen]; }; +CorReg = derive { name="CorReg"; version="1.0.5"; sha256="1b7l17i33bqvdzgqw5vc73fnpdgqbr01456qgmxls80ji8qjiv9x"; depends=[Rcpp lars Rmixmod elasticnet corrplot Matrix ridge rpart MASS mvtnorm mclust Rcpp RcppEigen]; }; CorrBin = derive { name="CorrBin"; version="1.5"; sha256="1kg8kms76z127j2vmf7v162n0sh2jqylw4i7c35x5sig4q22m9gy"; depends=[boot combinat geepack dirmult mvtnorm]; }; CorrMixed = derive { name="CorrMixed"; version="0.1-11"; sha256="18n70yx6yysvcn3wsf1zmnp4z2hs3783mr1n0pjp2ph5yd9xk4mg"; depends=[nlme psych]; }; Correlplot = derive { name="Correlplot"; version="1.0-2"; sha256="0prxnbi7ga5d23i0i4qpynfb3zrsgjxam47km6nsj1prakdkrq7w"; depends=[calibrate xtable]; }; @@ -377,6 +385,7 @@ DAAG = derive { name="DAAG"; version="1.20"; sha256="05jlsrs0frk9ky20h17c5vj9d4j DAAGbio = derive { name="DAAGbio"; version="0.62"; sha256="18m4vq8vv0yi79na62nrm0cy1nlk7bg0xbddzxv5gpkmzi1i6m9s"; depends=[]; }; DAAGxtras = derive { name="DAAGxtras"; version="0.8-4"; sha256="18lg13mbyharidj5j7ncx8s7d72v2hcnqr00vilhf3djk2mjq7xn"; depends=[]; }; DAGGER = derive { name="DAGGER"; version="1.4"; sha256="0b2hzv001xhch7pqgb53lfpdcjwg5lj33i6pb884l1kx92svjfr7"; depends=[Rglpk quadprog Matrix]; }; +DAISIE = derive { name="DAISIE"; version="1.0.1"; sha256="1dhfkjgksxy39siz5mf97sw2gyb0jvy44ndy0asdmplwhmqrc4md"; depends=[deSolve]; }; DAKS = derive { name="DAKS"; version="2.1-2"; sha256="1817s7xd4h2zzaagmnw423qaxpa5fmxi3fh4h9hm2ra9w7nh6ljj"; depends=[relations sets]; }; DALY = derive { name="DALY"; version="1.4.0"; sha256="1gx4q24149q1ipsrinswrm37z1nf4swgq188zsc1xifmw9l28v11"; depends=[]; }; DAMOCLES = derive { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[geiger caper ape deSolve matrixStats expm picante]; }; @@ -403,12 +412,12 @@ DIFlasso = derive { name="DIFlasso"; version="1.0-1"; sha256="048d5x9nzksphsdk9l DIFtree = derive { name="DIFtree"; version="1.0.0"; sha256="08s6ba44517xq783fysksb1h53zkqsk7zakaibi1c2npq1gzny9p"; depends=[penalized plotrix]; }; DIME = derive { name="DIME"; version="1.2"; sha256="11l6mk6i3kqphrnq4iwk4b0ridbbpg2pr4pyqaqbsb06ng899xw0"; depends=[]; }; DIRECT = derive { name="DIRECT"; version="1.0"; sha256="129bx45zmd6h7j6ilbzj2hjg4bcdc08dvm2igggi8ajndl1l5q9j"; depends=[]; }; -DLMtool = derive { name="DLMtool"; version="1.34"; sha256="0ir1131r408ya235k7syg854bfgsim39hh2k1498n5hrbaa99xfx"; depends=[snowfall boot MASS]; }; +DLMtool = derive { name="DLMtool"; version="1.35"; sha256="1qcc5q35a68m468ip1mhij2g0qzz5fhcjzax11a8n2fl9x2s9d57"; depends=[snowfall boot MASS]; }; DMR = derive { name="DMR"; version="2.0"; sha256="1kal3bvhwqs00b6p6kl0ja35pcz9v9y569148qfhy94m319fcpzm"; depends=[magic]; }; DMwR = derive { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[lattice xts quantmod zoo abind rpart class ROCR]; }; DNAprofiles = derive { name="DNAprofiles"; version="0.3.1"; sha256="0chsndrmanb2swmhfan9iz1bzz3jsvk24n7j9fnjxibckmn2fdpv"; depends=[RcppProgress Rcpp bit Rcpp RcppProgress]; }; DNAtools = derive { name="DNAtools"; version="0.1-21"; sha256="1ncx2rmxb0ip804x6xznfv8brjpp518fhnm1653mlrsl3hpzrh88"; depends=[Rsolnp multicool Rcpp Rcpp]; }; -DNMF = derive { name="DNMF"; version="1.0"; sha256="0s484hzzvvkqdh4s5cb6znz26wx07f9k7y940ghx3dkdc7rb0hrx"; depends=[]; }; +DNMF = derive { name="DNMF"; version="1.3"; sha256="09yp6x6vd44ahklcag96fpjgyphyn45rkqkbwr1n36a2d8vxk9nc"; depends=[foreach Matrix gplots doParallel]; }; DOBAD = derive { name="DOBAD"; version="1.0.4"; sha256="1hslwgs4q05xm29my5cq6g3vvjc0arvdmlx734wardj9dy29p1v5"; depends=[numDeriv lattice]; }; DOvalidation = derive { name="DOvalidation"; version="0.1.0"; sha256="0vm4sxbchkj2hk91xnzj6lpj05jg2zcinlbcamy0x1lrbjffn9zk"; depends=[]; }; DPpackage = derive { name="DPpackage"; version="1.1-6"; sha256="01qdl6cp6wkddl9fwwpxwvyhb7lpjxis6wnbm2s288y2n9wi4j24"; depends=[MASS nlme survival]; }; @@ -418,6 +427,8 @@ DSL = derive { name="DSL"; version="0.1-5"; sha256="0k320cmim9mvi5cmr6964h9i2jbs DSpat = derive { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[spatstat RandomFields rgeos mgcv sp]; }; DSsim = derive { name="DSsim"; version="1.0.3"; sha256="01kkpzs0prcq43y4nmyaw39bgjabr99xxs2hn3fmb4ka46xj0bfb"; depends=[shapefiles splancs mrds mgcv]; }; DStree = derive { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[rpart pec Ecdat rpart_plot survival Rcpp Rcpp]; }; +DSviaDRM = derive { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; +DT = derive { name="DT"; version="0.1"; sha256="0mj7iiy1gglw7kixybmb7kr1bcl5r006zcb3klkw7p6vvvzdm6qj"; depends=[htmltools htmlwidgets magrittr]; }; DTComPair = derive { name="DTComPair"; version="1.0.3"; sha256="1af2293ckkpz0gjcibgzzvz37852cav4wa4girpc87yn3p4ajlri"; depends=[gee PropCIs]; }; DTDA = derive { name="DTDA"; version="2.1-1"; sha256="0hi2qjcwd6zrzx87mdn1kns5f2h6jh7sz9jpgbi0p0i80xg8jnn3"; depends=[]; }; DTK = derive { name="DTK"; version="3.5"; sha256="0nxcvx25by2nfi47samzpfrd65qpgvcgd5hnq9psx83gv502g55l"; depends=[]; }; @@ -426,6 +437,7 @@ DTR = derive { name="DTR"; version="1.6"; sha256="186qgrx9alzmj1vdy2yvfqs5xgidmw DVHmetrics = derive { name="DVHmetrics"; version="0.3"; sha256="1ndrzd5q12kabpk3yj95s24kn7ri61w1h4aa50zw9qb12f5dzc98"; depends=[ggplot2 reshape2 shiny KernSmooth markdown]; }; Daim = derive { name="Daim"; version="1.1.0"; sha256="19s0p3a4db89i169n2jz7lf8r7pdmrksw7m3cp9n275b5h8yjimx"; depends=[rms]; }; DandEFA = derive { name="DandEFA"; version="1.5"; sha256="0d82rjkgqf4w7qg7irlqvzzav1f23i2gmygkbf8jycaa6xhli80d"; depends=[gplots polycor]; }; +Dark = derive { name="Dark"; version="0.9.4"; sha256="0paw34zhbi8k6pjgykxxqhpjgl8qr340dv091r9931q4mm215j2n"; depends=[]; }; DatABEL = derive { name="DatABEL"; version="0.9-6"; sha256="1w0w3gwacqrbqjdcngdp44d2gb16pq9grq2f8j2bhbxc4nkx12n1"; depends=[]; }; DataCombine = derive { name="DataCombine"; version="0.2.9"; sha256="1yvpv28fwkifiiyzj121dhzwzp06fncms5jbwpvc3nkq1bpzm2mk"; depends=[data_table dplyr]; }; Davies = derive { name="Davies"; version="1.1-8"; sha256="1wp7ifbs4vqfrn4vwh09lc53yiagpww91m5mxmcr62mjbw8q7zhr"; depends=[]; }; @@ -441,14 +453,14 @@ Demerelate = derive { name="Demerelate"; version="0.8-1"; sha256="1qngwlzzpd2cmi DendSer = derive { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; Density_T_HoldOut = derive { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; DepthProc = derive { name="DepthProc"; version="1.0.3"; sha256="0xil3pl33224sizn1wy9x3lcngw017qjl22hfqzss9iy73cmxqnc"; depends=[ggplot2 Rcpp rrcov MASS np lattice sm geometry colorspace Rcpp RcppArmadillo]; }; -Deriv = derive { name="Deriv"; version="3.4"; sha256="03fawwlcc3lxp7y3labbhvhpzcp9yfxhbwq7bq8av1fvq92l4xi6"; depends=[]; }; -DescTools = derive { name="DescTools"; version="0.99.10"; sha256="0sfjx1bmp0864l55yj7f0zgf4s9kyi2y1p1dajaaxq8mnclqdfz2"; depends=[manipulate boot mvtnorm]; }; +Deriv = derive { name="Deriv"; version="3.5.4"; sha256="07a3pm79mv8wiapjdb2n6scgl3hc7pvz9inalm80aqlhpqrvp3hs"; depends=[]; }; +DescTools = derive { name="DescTools"; version="0.99.11"; sha256="0ccqgx6w7x55h5pd76hjyq79g0cdyw2m0w1h55kw4chqj0ibqizy"; depends=[manipulate boot mvtnorm foreign]; }; DescribeDisplay = derive { name="DescribeDisplay"; version="0.2.4"; sha256="13npxq1314n4n08j6hbmij7qinl1xrxrgc5hxpbbpbd16d75c7iw"; depends=[proto reshape2 ggplot2 plyr scales GGally]; }; DetMCD = derive { name="DetMCD"; version="0.0.2"; sha256="0z4zs0k8c8gsd2fry984p06l3p17fdyfky8fv9kvypk7xdg52whc"; depends=[robustbase Rcpp RcppEigen]; }; DetSel = derive { name="DetSel"; version="1.0.2"; sha256="0igkccclmjwzk7sl414zlhiykym0qwaz5p76wf4i7yrpjgk7mhl9"; depends=[ash]; }; Devore7 = derive { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[MASS lattice]; }; DiagTest3Grp = derive { name="DiagTest3Grp"; version="1.6"; sha256="04dxyyqv333rkjf2vlfpal59m7klhw6y7qilym6nw78qb1kqqys7"; depends=[car KernSmooth gplots]; }; -DiagrammeR = derive { name="DiagrammeR"; version="0.6"; sha256="021i1nvw5airli3392rwz9vq1zxwm2pdlw1y6wqw4968g8yc0k9f"; depends=[htmlwidgets rstudioapi]; }; +DiagrammeR = derive { name="DiagrammeR"; version="0.7"; sha256="0cfxhxs4b5kknp1xsq2gg0dnyyv9vrj3bfswlvc5np7pkxankr2r"; depends=[htmlwidgets rstudioapi stringr]; }; DiceDesign = derive { name="DiceDesign"; version="1.6"; sha256="1djq7clga3cvpgfycs3zjj106213yhfj9909sqrni70nj1nwdpj9"; depends=[]; }; DiceEval = derive { name="DiceEval"; version="1.3"; sha256="1vp9zwd09cwl3c8066jr9d3w4yic70fvd40r7hsj2y8d0bhiwl82"; depends=[DiceKriging]; }; DiceKriging = derive { name="DiceKriging"; version="1.5.5"; sha256="035kbk633v4kfb44wiyb556sayl73c24fc1w09r3f33shqgidzjm"; depends=[]; }; @@ -480,6 +492,7 @@ DoubleExpSeq = derive { name="DoubleExpSeq"; version="1.0"; sha256="0y797iqmxihr DunnettTests = derive { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; }; DynClust = derive { name="DynClust"; version="3.13"; sha256="020zl2yljp47r03rcbzrbdmwk482xx27awwzv4kdrbchbzwhxqgm"; depends=[]; }; DynNom = derive { name="DynNom"; version="1.0.1"; sha256="0gdy3kqj63khm74cdjhfmlnd06ard97h1598rkqwm7c3cng7b98c"; depends=[ggplot2 stargazer shiny compare]; }; +DynTxRegime = derive { name="DynTxRegime"; version="2.1"; sha256="0dxf16zpj6cyx7afbvr4w4d76w4vshbvvkkqla68dbav0yvy7z7i"; depends=[modelObj]; }; DynamicDistribution = derive { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; EBEN = derive { name="EBEN"; version="1.1.1"; sha256="12nh96avcx4rrbmlr1q046i5ymrsnqvf0ra5ynh58akajfx7wy49"; depends=[]; }; EBMAforecast = derive { name="EBMAforecast"; version="0.42"; sha256="161l6jxbzli2g5lcmlp74z320rsvsi80pxk1vc1ypa1hgwz3q80x"; depends=[separationplot ensembleBMA plyr Hmisc abind]; }; @@ -519,9 +532,9 @@ ESG = derive { name="ESG"; version="0.1"; sha256="1jw6239asv6lwxrz5v0r5pzg6v500b ESGtoolkit = derive { name="ESGtoolkit"; version="0.1"; sha256="0r09arhsvamdyahini5yhgc43msdxwvn45l57xbfszahsnr3b3aq"; depends=[CDVine ggplot2 gridExtra reshape2 ycinterextra Rcpp Rcpp]; }; ETAS = derive { name="ETAS"; version="0.0-1"; sha256="1p38ay3vnca8b8wszm66whxap8k58c004l1nlsk7zkynyia0im6c"; depends=[spatstat]; }; ETC = derive { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; -ETLUtils = derive { name="ETLUtils"; version="1.2"; sha256="0mlfq23v7nl6lslscknk9mdx4dxk8xyc5imnvzlhzhag0k50mqj2"; depends=[ff]; }; +ETLUtils = derive { name="ETLUtils"; version="1.3"; sha256="13xq9i9fr34kx1nym7nr02gynshzm4jjn4qzx6ydg044b7xl57jp"; depends=[ff bit]; }; EW = derive { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; -EWGoF = derive { name="EWGoF"; version="2.0"; sha256="07kpzaqfd7ihpmh2y5806mz5h64dcajia5v36pp9myl04fvpjapp"; depends=[Rcpp maxLik miscTools Rcpp]; }; +EWGoF = derive { name="EWGoF"; version="2.1"; sha256="10p392n003sxn8l9sfnksi789k1w191rmkah6gxhji5f41gib5rh"; depends=[Rcpp Rcpp]; }; EasyABC = derive { name="EasyABC"; version="1.4"; sha256="0v3i7vlx2pnfkcqxka4g7ss8k8zphyx3vq5l0c1b433qp0fnjwf3"; depends=[abc pls mnormt MASS lhs]; }; EasyHTMLReport = derive { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc markdown knitr ggplot2 scales xtable reshape2]; }; EasyMARK = derive { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[MASS stringr rjags coda foreach doParallel random]; }; @@ -529,11 +542,12 @@ EasyStrata = derive { name="EasyStrata"; version="8.6"; sha256="0agmap9lmqbpfw8i EbayesThresh = derive { name="EbayesThresh"; version="1.3.2"; sha256="0n7cr917jrvmgwfqki7shvz9g9zpmbz9z8hm5ax7s8nnfzphrh4g"; depends=[]; }; Ecdat = derive { name="Ecdat"; version="0.2-7"; sha256="1z9mxx3mvn3vi5drxlzss7gs7vpzg7shinl529bx4jpxqpci90jy"; depends=[Ecfun]; }; Ecfun = derive { name="Ecfun"; version="0.1-4"; sha256="0h3351pcahrn578lz1pcb7h3chmh0vmwbn9iqll98vibck847gai"; depends=[fda gdata RCurl XML tis jpeg MASS TeachingDemos stringi]; }; -EcoGenetics = derive { name="EcoGenetics"; version="1.1.0"; sha256="1a7dsjvkxaa37nfha07fgfas9zygsj9hrsllgf4b67rkqihrzz87"; depends=[adegenet ggplot2 gstudio hierfstat party raster rgdal rkt sp vegan]; }; +EcoGenetics = derive { name="EcoGenetics"; version="1.2.0"; sha256="090vcbl8gl23335rga1126w6jqvql62kk9wxlfpjz4q11czgdclq"; depends=[adegenet ggplot2 hierfstat party raster rgdal rkt SoDA sp vegan]; }; EcoHydRology = derive { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[operators topmodel DEoptim XML]; }; EcoSimR = derive { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; }; EcoTroph = derive { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; EcoVirtual = derive { name="EcoVirtual"; version="0.1"; sha256="1c815kxljk4qhw0zs28w16ggasfyyyb6aggffx1m1q21s63h6c8h"; depends=[]; }; +EditImputeCont = derive { name="EditImputeCont"; version="1.0.0"; sha256="1ghrax514hm8zymmaifwbls4wpic8qqzlf83p615k3d96p4lb304"; depends=[Rcpp editrules Rcpp]; }; EffectLiteR = derive { name="EffectLiteR"; version="0.3-3"; sha256="14v5samvkzpiy0gq6lq1vs5jqi084sq1if2sih0lk57qxz2647qh"; depends=[lavaan shiny foreign ggplot2 nnet survey lavaan_survey car]; }; EffectStars = derive { name="EffectStars"; version="1.5"; sha256="0j2jxxxpcsrsjzszz4mfk3892ain3qkswa1dkpsmfsk4zs06g0s4"; depends=[VGAM]; }; EffectTreat = derive { name="EffectTreat"; version="0.1-11"; sha256="1ps3jac3wc1v325maf4vx9jkirxbc1dfflr218xbzbgrj0zx9diz"; depends=[]; }; @@ -548,15 +562,15 @@ EnsembleCV = derive { name="EnsembleCV"; version="0.7.1"; sha256="14mvwfjbhsrq9q EnsemblePCReg = derive { name="EnsemblePCReg"; version="0.6"; sha256="0amswx7x08hpfvsrkjyfz3adkfshl7d1knyvk9nrnrrpy65rilc3"; depends=[EnsembleBase]; }; EnsemblePenReg = derive { name="EnsemblePenReg"; version="0.6"; sha256="0fjp50jbnbhvyd7srvhy0ipysm192d8ikg9yra2vch33zrid2xbm"; depends=[EnsembleBase glmnet]; }; EntropyEstimation = derive { name="EntropyEstimation"; version="1.2"; sha256="13kb83lfpkw6yq687j0ci23yn5c9dqjibybyyaplk6jixy08lrvy"; depends=[]; }; -EntropyExplorer = derive { name="EntropyExplorer"; version="1.0"; sha256="0daj7g209nk8lsalk51kf8kkr6lbnnlzf7xd2mmv1axm7y5rppl2"; depends=[]; }; +EntropyExplorer = derive { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; }; EnvNicheR = derive { name="EnvNicheR"; version="1.0"; sha256="1vw21gsdrx8gkf1rf8cnazv8l9ddcdmy2gckyf33fz7z2mbzgbkk"; depends=[]; }; -EnvStats = derive { name="EnvStats"; version="2.0.0"; sha256="1yjm1lm9hsq5gw6j8wqxxgc72p7c6prr5fx8vk9v6bb2hgf2bm8i"; depends=[MASS]; }; -EnviroStat = derive { name="EnviroStat"; version="0.4-0"; sha256="05sa63z6yzny2ncxpm5d3x0bx8snkn0x5pzpj2a7y6rwf6al5q4r"; depends=[MASS]; }; +EnvStats = derive { name="EnvStats"; version="2.0.1"; sha256="1z909p56dlhr00a5ir55sn5ny51h1wwi85as6arv3cn8c0zqyi74"; depends=[MASS]; }; +EnviroStat = derive { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; Epi = derive { name="Epi"; version="1.1.67"; sha256="12wbzv21whjnzlyqacgqmsgrjbkgj2495y9fwvav5mr21yfrjds3"; depends=[]; }; EpiContactTrace = derive { name="EpiContactTrace"; version="0.8.8"; sha256="1vlr2xxnyq1i6ky39g8j3pf3m5775bmhii7vpskb0x7nnq161yzb"; depends=[Rcpp plyr R2HTML Rcpp]; }; EpiDynamics = derive { name="EpiDynamics"; version="0.2"; sha256="1hqbfysvw2ln8z3as6lfcjlhkzccksngwh2vm25zsgy93gxw3mcc"; depends=[deSolve reshape2 ggplot2]; }; EpiEstim = derive { name="EpiEstim"; version="1.1-2"; sha256="0r56iglhkrqvlsf3gbahd544h944fmbyn6jdc113rhjscf6dl605"; depends=[]; }; -EpiModel = derive { name="EpiModel"; version="1.1.4"; sha256="0gyj80xmhwa3a7k12m3lla9rkpfv1n307vjf8lka1bd1rvwipg2c"; depends=[deSolve network networkDynamic tergm doParallel ergm foreach RColorBrewer statnet_common]; }; +EpiModel = derive { name="EpiModel"; version="1.1.6"; sha256="0h3bbvk9qyhc0jml2jd21dahi1v00alar67jkzpwnavvmcgd8a3s"; depends=[deSolve network networkDynamic tergm doParallel ergm foreach RColorBrewer statnet_common]; }; Eplot = derive { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; }; EstCRM = derive { name="EstCRM"; version="1.3"; sha256="0fmnlh0pnprskq01iq3rfassyxq7fywiprvqw0xdlh8yxl3w2c9n"; depends=[Hmisc lattice]; }; EstSimPDMP = derive { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; }; @@ -565,19 +579,20 @@ EvalEst = derive { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd Evapotranspiration = derive { name="Evapotranspiration"; version="1.5"; sha256="181s9wwil07740n79gz2ar9c1bjxy45v4fyxxkqjmdfly72la542"; depends=[zoo]; }; EvoRAG = derive { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; ExPosition = derive { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; }; -Exact = derive { name="Exact"; version="1.5"; sha256="14469wfm5g28ajlpcrqkmvhbqps8wvrh5lsi0rcrwbwybfv435vn"; depends=[]; }; +Exact = derive { name="Exact"; version="1.6"; sha256="0d5g5p98yrcd6v56iadsq448hl522shdqln2icmc3yfnya326as7"; depends=[]; }; ExactCIdiff = derive { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; ExactPath = derive { name="ExactPath"; version="1.0"; sha256="0ngvalmgdswf73q0jr4psg0ihnb7qwkamm6h64l01k5rmgd5nm16"; depends=[ncvreg lars]; }; ExceedanceTools = derive { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[splancs SpatialTools]; }; -ExomeDepth = derive { name="ExomeDepth"; version="1.1.4"; sha256="0a4y6y1zi1jn1g14f3wsl2pfbmp58afwkvrk7x7s1wp16vwgq0xb"; depends=[aod VGAM]; }; +ExomeDepth = derive { name="ExomeDepth"; version="1.1.5"; sha256="11ff89c080855wmvglapif7h3wmk6zrgfqcb0kshy4jglpwkz52x"; depends=[aod VGAM]; }; ExpDes = derive { name="ExpDes"; version="1.1.2"; sha256="0qfigbx06b3p04x5v7wban139mp8hg8x77x6nzwa4v6dr226qbkv"; depends=[]; }; ExpDes_pt = derive { name="ExpDes.pt"; version="1.1.2"; sha256="0khw2jhg2vxcivgr20ybvrsqhd8l8bir5xjmr4m44za9nhap43bz"; depends=[]; }; +ExtDist = derive { name="ExtDist"; version="0.6-3"; sha256="1vsxm578bb70wnz3mxm7y1n5vs0x5pby99hvxg5y5ksh2g2ascwa"; depends=[numDeriv optimx]; }; ExtremeBounds = derive { name="ExtremeBounds"; version="0.1.5"; sha256="1fsrp2dm1bdg5p0qsi2wa8qxrlq065jlazsxzixpjsni910mrb2k"; depends=[Formula]; }; FACTscorer = derive { name="FACTscorer"; version="0.1.0"; sha256="1gbfpm5szi6w8iyp7ywpqrmdq0wrv5axj29sj9gxjwmjfh5qgqjx"; depends=[]; }; FADA = derive { name="FADA"; version="1.2"; sha256="1wpjqvhhgvirzcvl8r23iaw63wr8rys19mjy71mn24wg3zwnc2qz"; depends=[MASS elasticnet sparseLDA sda glmnet mnormt crossval]; }; FAMILY = derive { name="FAMILY"; version="0.1.18"; sha256="1f1s0p721sl27b9xp2wrdyx03kv1bdin4wfknmw1k0nnc94dcnp2"; depends=[pheatmap pROC]; }; FAMT = derive { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[mnormt]; }; -FAOSTAT = derive { name="FAOSTAT"; version="1.9"; sha256="0gff60vlv35m5sjmz7glbdrd6ijy6n32a9xd26z2ix839qgywvqj"; depends=[RJSONIO plyr data_table MASS classInt ggplot2 labeling scales]; }; +FAOSTAT = derive { name="FAOSTAT"; version="2.0"; sha256="06z8c964sf73ld4v9vybqjsdxskxp3ssyv0a3mpcs9la5y7n9jaz"; depends=[RJSONIO plyr data_table MASS classInt ggplot2 labeling scales]; }; FAdist = derive { name="FAdist"; version="2.1"; sha256="1y66ymg0k6kmyq4bclwwlqkp8brkq925ajpp0jqqn39f749c2kji"; depends=[]; }; FAiR = derive { name="FAiR"; version="0.4-15"; sha256="18nj95fiy3j7kf4nzf692dxja3msnaaj5csg745bnajb48l606wz"; depends=[rgenoud gWidgetsRGtk2 rrcov Matrix]; }; FAmle = derive { name="FAmle"; version="1.3.3"; sha256="125m2hvl603avg9h9x5gfb7l9clpg7p0ir8fdypxyjiqggdr8hxa"; depends=[mvtnorm]; }; @@ -594,7 +609,7 @@ FField = derive { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dw FGN = derive { name="FGN"; version="2.0-12"; sha256="0jxawb4wm1vcp0131mdnc0r24dw8sd29ih0fc2wh6ahy7mxzajqn"; depends=[akima ltsa]; }; FGSG = derive { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; FGalgorithm = derive { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; -FHtest = derive { name="FHtest"; version="1.1"; sha256="0yqy3lvxjhk7biqfikxqlgs9zsy1vlld9pqxhgxmq04gbnjn2jfk"; depends=[interval MLEcens MASS KMsurv]; }; +FHtest = derive { name="FHtest"; version="1.2"; sha256="033p90zzlgx2galzp2iwwpg29hhhgscqmqkwpr69y2ck3nj3hz0v"; depends=[interval KMsurv survival perm MASS]; }; FI = derive { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; FITSio = derive { name="FITSio"; version="2.0-0"; sha256="1gf3i1q9g81gydag2gj1wsy6wi5jj2v4j3lyrnh1n2g4kxd6s3cp"; depends=[]; }; FKF = derive { name="FKF"; version="0.1.3"; sha256="01ibihca39zng4wrvhq8h28bmb2rnsjm21xy22b85kpn3mbnh7f1"; depends=[RUnit]; }; @@ -612,9 +627,10 @@ FRB = derive { name="FRB"; version="1.8"; sha256="13rp4gqldx84mngrdv5fa9xamkng7b FRCC = derive { name="FRCC"; version="1.0"; sha256="1g1rsdqsvwf7wc16dj16y6r0347j8jsv5l1pxvj1h0579zinaf2b"; depends=[CCP MASS calibrate corpcor]; }; FREQ = derive { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive { name="FRESA.CAD"; version="2.0.2"; sha256="1clnv18d6f747725ayksas3c2hng1bkb4zss44avfqh9q1y0z1iy"; depends=[Rcpp stringr miscTools Hmisc pROC Rcpp RcppArmadillo]; }; +FSInteract = derive { name="FSInteract"; version="0.1.1"; sha256="0hlmz0sc4l9vmb4b2y3j95gh39m1jqrp9bvqsjjqdr0ly1lb7mvm"; depends=[Rcpp Matrix Rcpp]; }; FSelector = derive { name="FSelector"; version="0.20"; sha256="0gbnm48x5myhxxw8gz7ck9sl41nj5rxq4gwifqk3l4kiqphywlpi"; depends=[randomForest RWeka digest entropy]; }; FTICRMS = derive { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[Matrix lattice]; }; -FWDselect = derive { name="FWDselect"; version="1.1"; sha256="1snamrzf0cqcm6sc5vr1b0scgy83jgr5hgsf2cjb3vi3j01hz9wd"; depends=[mgcv]; }; +FWDselect = derive { name="FWDselect"; version="2.0"; sha256="12hhb2vysg3c9fzh56xy3kwhwbgcn1yx4afhlpydnavp3aclrqrg"; depends=[cvTools mgcv]; }; FacPad = derive { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[Rlab MASS]; }; FactMixtAnalysis = derive { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; FactoClass = derive { name="FactoClass"; version="1.1.1"; sha256="0m5108g2nhdwqqmkn04l1x0kx32ikkhcz6gki0hpj9hlzrkya5w6"; depends=[ade4 xtable]; }; @@ -622,14 +638,14 @@ FactoMineR = derive { name="FactoMineR"; version="1.29"; sha256="08pyp8z9xhy9f1m Factoshiny = derive { name="Factoshiny"; version="1.0"; sha256="0r8xnnmf2c0nhddgzwsfb86ajpirkr1788phhcjdap1w9k67nsy9"; depends=[FactoMineR shiny]; }; Fahrmeir = derive { name="Fahrmeir"; version="2012.04-0"; sha256="1axx6r4g6gj1inih41i2az4y0d3jq9x1a6nyj8k7wp51z4z2nbmk"; depends=[]; }; Familias = derive { name="Familias"; version="2.2"; sha256="1nhjxn3f063gvi4jvwb8r4fap7f1zbcvb6qa30153yh31yprljls"; depends=[kinship2 paramlink]; }; -FastHCS = derive { name="FastHCS"; version="0.0.4"; sha256="11ddp1xy1cmnfbsvabyw0y2wdj4z1brqykji75y7wwchf71m2bps"; depends=[matrixStats rrcov Rcpp RcppEigen]; }; +FastHCS = derive { name="FastHCS"; version="0.0.5"; sha256="02ds9syqh8wpjrqibdv3kqxcyijclm572daqrj262b4b6211v46x"; depends=[matrixStats robustbase Rcpp RcppEigen]; }; FastImputation = derive { name="FastImputation"; version="1.2"; sha256="04bz623kcanxcl9z8zl6m7m47pk0szcjrjlgs5v1yl3jnq9m2n7g"; depends=[]; }; FastKNN = derive { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[pdist assertthat]; }; FastPCS = derive { name="FastPCS"; version="0.1.2"; sha256="1lqb6g65vna2p7kc2y4kc5piy3280nlxl41bdkxkng2icmq14l58"; depends=[matrixStats Rcpp RcppEigen]; }; FastRCS = derive { name="FastRCS"; version="0.0.6"; sha256="0wjsh37jas8hcb9554ijvwj0k8dx96fjf88bzgy7nbim2byiy8p8"; depends=[matrixStats Rcpp RcppEigen]; }; FastRWeb = derive { name="FastRWeb"; version="1.1-0"; sha256="1hiabi7ibp69n5wi5x4kwznxhc2i7dxdrqf1fm6ppv7ix0wkjs07"; depends=[Cairo]; }; FatTailsR = derive { name="FatTailsR"; version="1.0-3"; sha256="0r9n18qlr70p6y4v1xv1lxi1lzm9qp29qy4w51chllqjn15kmv7l"; depends=[minpack_lm]; }; -FeaLect = derive { name="FeaLect"; version="1.8"; sha256="04vmf89kgn7hh9wzj6b654546d3jvz0zz675xhcd11gjzlsp8pgc"; depends=[lars rms]; }; +FeaLect = derive { name="FeaLect"; version="1.10"; sha256="1r7rgcadrqjhxn2g2w16axygsck82fprxg7l14ai11bn4b7h4pmb"; depends=[lars rms]; }; FeatureHashing = derive { name="FeatureHashing"; version="0.9"; sha256="1xbzmyah22kjrkd7ln1pjzwyn5w0zmhdhs9w1a3p8rjxrwmx6ssf"; depends=[Rcpp Matrix digest magrittr Rcpp digest BH]; }; FedData = derive { name="FedData"; version="1.1.0"; sha256="0s5blfhlizl4lv22lxjhqrwrf10mxgy2cd5z4a9xg05k419q7alr"; depends=[sp rgdal raster RCurl rgeos igraph data_table devtools soilDB]; }; FeedbackTS = derive { name="FeedbackTS"; version="1.3.1"; sha256="1zx64wbl5pzqn69bjhshd3nayxx4wlg7n1zwv7ilh68raxfxnbbx"; depends=[maps mapdata proj4 geoR sp]; }; @@ -681,7 +697,7 @@ GANPA = derive { name="GANPA"; version="1.0"; sha256="0ia8djv46jm397nxjrm9yc5gac GANPAdata = derive { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; GAR = derive { name="GAR"; version="1.0"; sha256="1278rdln23pl5ay87nb6w15ywdh6ls8hx8k0nb48ab4ysjqf6r04"; depends=[httr jsonlite]; }; GAabbreviate = derive { name="GAabbreviate"; version="1.0"; sha256="0c9407i6dq7psw744fpkf190as99fssd9n9k0xbvwif10agm278l"; depends=[GA psych]; }; -GB2 = derive { name="GB2"; version="1.2"; sha256="1b5mkgn8c26bmi9ndzsqqp22vxqssy4nya1yysrl5wssjgicpdzs"; depends=[cubature hypergeo laeken numDeriv]; }; +GB2 = derive { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; GCAI_bias = derive { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; GCD = derive { name="GCD"; version="3.0.5"; sha256="1ami5xw5xx464pxr9y1z9bb3dvj46vx3wrbh19w4g7sk8yjvh5nl"; depends=[]; }; GCPM = derive { name="GCPM"; version="1.1.1"; sha256="1wm7nmqj88j1pd2s1lvi6z1fizm3q3cl7vbzp88vbhpij4rnk4jl"; depends=[Rcpp RcppProgress Rcpp RcppProgress]; }; @@ -696,7 +712,7 @@ GEVStableGarch = derive { name="GEVStableGarch"; version="1.0"; sha256="007s7lbf GEVcdn = derive { name="GEVcdn"; version="1.1.3"; sha256="13p6hkdybs8s2i363z2a65yijqarwj9swvy22ljk61shf2nzbk80"; depends=[VGAM]; }; GExMap = derive { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[]; }; GGEBiplotGUI = derive { name="GGEBiplotGUI"; version="1.0-8"; sha256="0bkagsm9mkcghc2q46cc86kjajzgjbq9588v0v2bp71qw8m97mbh"; depends=[rgl tkrplot]; }; -GGIR = derive { name="GGIR"; version="1.1-4"; sha256="1z1dwnx8lpj3xk7fdfm6sidbxpfgxjw9righ1kdnjw9g1nnkp29x"; depends=[]; }; +GGIR = derive { name="GGIR"; version="1.1-5"; sha256="0lanza1i7bqa0z745hbxkkyjhf6jy578jjva6nbisbbfsrbf7ydj"; depends=[]; }; GGMselect = derive { name="GGMselect"; version="0.1-9"; sha256="18l98v6hv0sjhany275lsbdjwclx3abqfi924n9qlcnap1rvsfwz"; depends=[mvtnorm lars gtools]; }; GGally = derive { name="GGally"; version="0.5.0"; sha256="00ix8qafi71l7vhj6268f9srqbgr9iw1qk0202y59mhfrj6c6f5i"; depends=[ggplot2 gtable plyr reshape stringr]; }; GHQp = derive { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; }; @@ -727,12 +743,12 @@ GRaF = derive { name="GRaF"; version="0.1-12"; sha256="1d7mr2z49v6ch4jbzh0dj2yjy GSA = derive { name="GSA"; version="1.03"; sha256="1h1sbpn1rrdh44w4fx2avc7x24ba40mvpd8b2x5wfrc7a294zf6z"; depends=[]; }; GSAgm = derive { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[survival]; }; GSE = derive { name="GSE"; version="3.1"; sha256="08xr7w6dsmgs3l8ayihadcvwy0xdzn78fllxa42sk7nfz6waadr3"; depends=[Rcpp MASS ggplot2 Rcpp RcppArmadillo]; }; -GSIF = derive { name="GSIF"; version="0.4-5"; sha256="041w4jvg7cwf90l03wl0jff24vf3lkzm3xqvl15117piix82lsf4"; depends=[sp RSAGA dismo rgdal raster aqp plotKML gstat plyr]; }; +GSIF = derive { name="GSIF"; version="0.4-6"; sha256="00m5djgc443678nwnmvgqv070g67pbvp1ci1x8gp7van8knjn5zq"; depends=[sp RSAGA dismo rgdal raster aqp plotKML gstat plyr]; }; GSM = derive { name="GSM"; version="1.3.1"; sha256="1ay6znw31qnhz5k6fa0aiccr2xxmnj7v3vzrvlk6y5v5smlvybd0"; depends=[gtools]; }; GUIDE = derive { name="GUIDE"; version="1.0.9"; sha256="1y0y6rwv1khd9bdaz5rl9nmxiangx0jckgihg16wb6hx6kf8kzc1"; depends=[rpanel tkrplot]; }; GUILDS = derive { name="GUILDS"; version="1.2.1"; sha256="1z90qjgrx16yk956phbifcr7jd3w59h7akzz7p6g5ymrcjzih4qf"; depends=[Rcpp pracma subplex Rcpp]; }; GUIProfiler = derive { name="GUIProfiler"; version="0.1.2"; sha256="1k56clda6xr649xfacnigi3c2s7ih1whchwcfqm7aa2d44vv3axz"; depends=[Nozzle_R1 MASS]; }; -GUTS = derive { name="GUTS"; version="0.9.1"; sha256="1rxgvhpy8ss2a5vaidv1ay3rvq3msv7hv3rcyykmdxj34nvz19bb"; depends=[Rcpp Rcpp BH]; }; +GUTS = derive { name="GUTS"; version="0.9.3"; sha256="0gyi5vlr1r35qn3gj788lh9xrb7dz03r57hxk11x8w72kv415pih"; depends=[Rcpp Rcpp]; }; GUniFrac = derive { name="GUniFrac"; version="1.0"; sha256="0xr68yv3h2lwn7sxy8l5p9g1z3q9hihg9jamsyl70jj9b2ic80jn"; depends=[vegan ape]; }; GWAF = derive { name="GWAF"; version="2.2"; sha256="11lk1dy24y1d0biihy2aypdvlx569lw1pfjs51m54rhgpwzkw6yd"; depends=[geepack coxme lme4]; }; GWASExactHW = derive { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; @@ -786,7 +802,7 @@ GroupSeq = derive { name="GroupSeq"; version="1.3.2"; sha256="16n06jw7f97jhafgl9 GuardianR = derive { name="GuardianR"; version="0.5"; sha256="0m5arxz4ih84zg8sf2wy2kg38adraa098gb52vwz93dzdm1dhslw"; depends=[RCurl RJSONIO]; }; Guerry = derive { name="Guerry"; version="1.6-1"; sha256="1hpp49w2kd1npsd709cwg125pw6mrqxfv2nn3lcs1mg2r49ki2bl"; depends=[]; }; GxM = derive { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[Rcpp minqa nlme]; }; -HAC = derive { name="HAC"; version="1.0-2"; sha256="0f4him7qpam4s0xxm49xqx0g3nrj87rszm52l376xi63z7r02wbv"; depends=[copula]; }; +HAC = derive { name="HAC"; version="1.0-3"; sha256="084i123fj5vnhn08fa1qzbk93khsi3r60s52d6pqkqvzbxc572jr"; depends=[copula numDeriv]; }; HAP_ROR = derive { name="HAP.ROR"; version="1.0"; sha256="1id9amz1cc2l2vnpp0ikbhf8ghbgzqd1b9dfivnyglg7996c3gbg"; depends=[hash ape]; }; HAPim = derive { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; }; HBSTM = derive { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[MASS fBasics maps]; }; @@ -826,13 +842,13 @@ HWxtest = derive { name="HWxtest"; version="1.0.5"; sha256="01pvi87g5sfglbdv38ik HadoopStreaming = derive { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; }; HandTill2001 = derive { name="HandTill2001"; version="0.2-9"; sha256="1j4ivxarm3k9sj05824lv6b03apyabpciv4mp253vv0yzjcp2bzf"; depends=[]; }; Hankel = derive { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; }; -HapEstXXR = derive { name="HapEstXXR"; version="0.1-7"; sha256="1jarb0465yymb08r8dr0mn6qlwbf0y0c4ipvxvcfwlvqalbp2kd6"; depends=[survival]; }; -Haplin = derive { name="Haplin"; version="5.3"; sha256="1gfg9dhgw42yjd1i8knnjvc2y2fbdc2ypa396g48hmsnislqffsd"; depends=[MASS mgcv GenABEL DatABEL filehash]; }; +HapEstXXR = derive { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; }; +Haplin = derive { name="Haplin"; version="5.5"; sha256="12wkj5x1s920xs0xzhxk0dswmwan7x20fw5sj6cx29n013h1gkam"; depends=[GenABEL DatABEL mgcv MASS SuppDists snow]; }; HaploSim = derive { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; HardyWeinberg = derive { name="HardyWeinberg"; version="1.5.5"; sha256="1kz12301bi2880i9ds7wvc6yb5hvrs3fr5689fm1yygkqfq8zc56"; depends=[mice]; }; HarmonicRegression = derive { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; -HelpersMG = derive { name="HelpersMG"; version="1.0"; sha256="11bjzkbdrysnryxriqk3wj8npk42i8rpc5b0c07q1zvk39png3lk"; depends=[coda]; }; -HiClimR = derive { name="HiClimR"; version="1.2.0"; sha256="10ick0311nc4zcqswlk3lhi9k5bv96nicqxqcq706cmlfk0qd0c7"; depends=[]; }; +HelpersMG = derive { name="HelpersMG"; version="1.1"; sha256="0pk8bcad9dnza803cq1428qlgb74vzq0vzx2q6f2j2hwmfpn13dx"; depends=[coda]; }; +HiClimR = derive { name="HiClimR"; version="1.2.1"; sha256="12qq3w20xzw2ih15hw5pzn0h58wv8rczhb4zxcdzc7zbg6i8qas4"; depends=[]; }; HiCseg = derive { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; HiDimDA = derive { name="HiDimDA"; version="0.2-3"; sha256="0pk7hf8cnwv22p5cbpsh5wd94i1an87ddv80qycgypx4wi0v57hh"; depends=[]; }; HiDimMaxStable = derive { name="HiDimMaxStable"; version="0.1.1"; sha256="0gscdjm48yyf8h3bn6xjbjlfc1hwbbh5j6v64c0z3d04h9q35c24"; depends=[copula mnormt partitions maxLik mnormpow VGAM]; }; @@ -856,6 +872,7 @@ HydroMe = derive { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650 HyperbolicDist = derive { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; }; IASD = derive { name="IASD"; version="1.0.7"; sha256="0a25sd82fxnmz3f4iaxhc69cdfb7xmh7wi79wv11sbw9cv2pl7kr"; depends=[]; }; IAT = derive { name="IAT"; version="0.2"; sha256="0byivq2298sjvpsz5z1w7r31h6z2jqpip40z8r2alygbgwwa48pd"; depends=[data_table ggplot2]; }; +IATscores = derive { name="IATscores"; version="0.1-2"; sha256="0grl5m4ccwaxvhg1bziy3vv5jffkvr24z268ws5m4ia20haif0dm"; depends=[stringr dplyr reshape2 qgraph]; }; IBDLabels = derive { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; IBDhaploRtools = derive { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; }; IBDsim = derive { name="IBDsim"; version="0.9-4"; sha256="0cpabz7mnhsrmjrgb23zs5anjrkhwc2005b2inl6p93l47i81fps"; depends=[paramlink]; }; @@ -873,7 +890,7 @@ ICSNP = derive { name="ICSNP"; version="1.0-9"; sha256="0kisk7wk0zjsr47hgrmz5c8f ICsurv = derive { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; IDPSurvival = derive { name="IDPSurvival"; version="1.0"; sha256="1v1w0i74b065b4qc302xbdl5df7qx9z8jmbc9cn46fqm1hh2b6d7"; depends=[Rsolnp gtools survival]; }; IDPmisc = derive { name="IDPmisc"; version="1.1.17"; sha256="0nbwdyg9javjjfvljwbp2jl0c6414c11zb2pirmm5pmimaq9vv0q"; depends=[lattice]; }; -IFP = derive { name="IFP"; version="0.1.2"; sha256="1sgjyxjfw3i1k02wy2lc7w9gnrs5g4wnp8kd78ks77f9j0sah2j8"; depends=[haplo_stats coda]; }; +IFP = derive { name="IFP"; version="0.2.0"; sha256="02dm2qbnrs2yi6c64j90hdfimmdsld46k1wdkay8pfg62jy9rrwa"; depends=[haplo_stats coda]; }; IM = derive { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[png jpeg bmp]; }; IMIS = derive { name="IMIS"; version="0.1"; sha256="09zb48vdj0i3vf8vxrs07xwb9ji27vp2fyvmg6jfq631licsryc2"; depends=[mvtnorm]; }; INLABMA = derive { name="INLABMA"; version="0.1-6"; sha256="0rij3y89yyj25xz8r9n8cnq7rg9b7hf0n9nxxrrnm86w3n4r66in"; depends=[sp Matrix spdep]; }; @@ -887,10 +904,10 @@ ISLR = derive { name="ISLR"; version="1.0"; sha256="0gmhvsivhpq3x8a240lgcbv1qzdg ISOcodes = derive { name="ISOcodes"; version="2015.04.04"; sha256="1mg7mifcqh0g0ra4f1skng6fyp2rhfv2xd9m7nyih39inzdjkcdf"; depends=[]; }; ISOpureR = derive { name="ISOpureR"; version="1.0.8"; sha256="0jjamyj4rf078rfa2qqrn4i55025sc5968lq95yadbw0izxb51i8"; depends=[Rcpp Rcpp RcppEigen]; }; ISOweek = derive { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; -ISwR = derive { name="ISwR"; version="2.0-6"; sha256="1ms4lm1skfqaq4mnm03kvjb7kaxdzv72s6i77zp7z17gzfa40c9h"; depends=[]; }; +ISwR = derive { name="ISwR"; version="2.0-7"; sha256="1rd1wrvl8wlc8ya5lndk74gnfvj9wp29z8617v3kbf32gqhby7ng"; depends=[]; }; IUPS = derive { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[R2jags Matching boot]; }; Iboot = derive { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; }; -IgorR = derive { name="IgorR"; version="0.7.1"; sha256="1ahj1ckzjffsskicdy2b70pzx5cn2r0s22yg1ajwiyy4ykwcg4pk"; depends=[bitops]; }; +IgorR = derive { name="IgorR"; version="0.8"; sha256="1khm7mbs497ybaw428ziwlxxygg1vcn5kx77w2cwm4mg8w95f4na"; depends=[bitops]; }; Imap = derive { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; }; ImpactIV = derive { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; }; InPosition = derive { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[prettyGraphs ExPosition]; }; @@ -904,18 +921,18 @@ InteractiveIGraph = derive { name="InteractiveIGraph"; version="1.0.6.1"; sha256 Interatrix = derive { name="Interatrix"; version="1.0"; sha256="1lkkjckxc0fc8hg1livgzrgphqwcp53cib0r0vii5jp4zkcna595"; depends=[MASS tkrplot]; }; Interpol = derive { name="Interpol"; version="1.3.1"; sha256="1598lnnrcxihxysdljphqxig15fd8z7linw9byjmqypwcpk6r5jn"; depends=[]; }; Interpol_T = derive { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[date chron]; }; -InvariantCausalPrediction = derive { name="InvariantCausalPrediction"; version="0.3-2"; sha256="09s6jwcb6wyi6p1nqxvyfvv4140fq6svfv7w681nk8g57xlgc1h1"; depends=[glmnet mboost jointDiag]; }; +InvariantCausalPrediction = derive { name="InvariantCausalPrediction"; version="0.3-3"; sha256="00sxfgnzqikp92haqnqi4asq904dcsqqnxmz23lx7508qbfx3vhn"; depends=[glmnet mboost]; }; InventorymodelPackage = derive { name="InventorymodelPackage"; version="1.0.2"; sha256="1w35idsagl9v93ci3qmal3xbf11sy6h1k7xnv25c59ivfnpjpkva"; depends=[e1071]; }; IsingFit = derive { name="IsingFit"; version="0.3.0"; sha256="0imgj3g6sankzmycjkzzz3bgai3jjycgsinhs5zy9k4vgqjg27d6"; depends=[qgraph Matrix glmnet]; }; IsingSampler = derive { name="IsingSampler"; version="0.2"; sha256="16vwb5pcqjvvsk9wsgj10mzhgh72iz1q6n8nmkva6y1l7xv54c8w"; depends=[Rcpp plyr magrittr nnet Rcpp]; }; -Iso = derive { name="Iso"; version="0.0-15"; sha256="18ig772xxsbj1vhrv7b20hrglnnz742s1mjzhwx02bpjhica4a46"; depends=[]; }; +Iso = derive { name="Iso"; version="0.0-17"; sha256="0lljc99sdzdqj6d56qbsggibr6pkdwkh821bj70ianikyvmdc1y0"; depends=[]; }; IsoCI = derive { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoGene = derive { name="IsoGene"; version="1.0-23"; sha256="18sl1qki2dn4ldycpqazj23zcibs3zqwp355q24nwr802xx3y4a6"; depends=[Iso xtable ff]; }; IsotopeR = derive { name="IsotopeR"; version="0.4.7"; sha256="18gwmh4nprj4z0ar1w8npj2ymxihw5ydwa33g25mimjk8y2cs0x5"; depends=[coda fgui runjags]; }; JADE = derive { name="JADE"; version="1.9-92"; sha256="0ki3jpz4npjikn3jjb7ppiyx0flhxx3p8aghjxlm3klhkm0k6ix4"; depends=[clue]; }; JAGUAR = derive { name="JAGUAR"; version="2.0"; sha256="1c9pyg9jph95161g6zz0jlv5hlyvr9z960by7x3pv7plfkppjy7m"; depends=[Rcpp plyr lme4 doParallel Rcpp]; }; JASPAR = derive { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; }; -JBTools = derive { name="JBTools"; version="0.7.2.6"; sha256="1wpkv8841kzpw2iqacp6k0y182lsvfl1ri54aq1hg4ypb51b8ibb"; depends=[foreach gplots colorspace plotrix]; }; +JBTools = derive { name="JBTools"; version="0.7.2.9"; sha256="0bynqn3daqgmi3l9asy34mfwyfjkn35k465dfqqi3xwx6cbzlg5k"; depends=[foreach gplots colorspace plotrix]; }; JGL = derive { name="JGL"; version="2.3"; sha256="1351iq547ln06nklrgx192dqlfnn03hkwj3hrliqzfbmsls098qc"; depends=[igraph]; }; JGR = derive { name="JGR"; version="1.7-16"; sha256="0iv659mjsv7apzpzvmq23w514h6yq50hi70ym7jrv948qrzh64pg"; depends=[rJava JavaGD iplots]; }; JM = derive { name="JM"; version="1.3-0"; sha256="0yn33dvy9kp7xaxlqk11f86qaichdcxpmq04gpnbcs8w8cdjjz3m"; depends=[MASS nlme survival]; }; @@ -956,7 +973,7 @@ LCAextend = derive { name="LCAextend"; version="1.2"; sha256="1y9azq9v42a3z5fq6g LCFdata = derive { name="LCFdata"; version="2.0"; sha256="1x3vbr6hdviqvd6dxn1kb449g0q5zkfmjsmr5nxd2g82p69lv3xm"; depends=[]; }; LDAvis = derive { name="LDAvis"; version="0.2"; sha256="18fbnk5qd7icn3mgwwb3ld3c9n3j1z4ydc2pg2zizkrahhqxdswi"; depends=[proxy RJSONIO]; }; LDOD = derive { name="LDOD"; version="1.0"; sha256="0mf2sy01yv57mqicrz08a17m6crigklx6fmw9zpxv7g85qw1iq4v"; depends=[Rsolnp Rmpfr]; }; -LDPD = derive { name="LDPD"; version="1.0.2"; sha256="0bs3s6x6f9rpp53x8ird6qnz9rfayf64askrr04hdjhlgw7cs0n7"; depends=[MASS nleqslv]; }; +LDPD = derive { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; }; LDRTools = derive { name="LDRTools"; version="0.1"; sha256="1cr0v6qsdldy89p44lhr6hisqaz99qzab32kd1srdnnwnwl1q2y4"; depends=[]; }; LDcorSV = derive { name="LDcorSV"; version="1.3.1"; sha256="0i4npl90mkj8vry6ckq8bc4ydbl44vxichgsxyn80r6k9i71yl67"; depends=[MASS]; }; LDheatmap = derive { name="LDheatmap"; version="0.99-1"; sha256="1bj42chw1xyf8yg6cfv9p4yzsggng7zy6wrw6q22559pwm6c6vr0"; depends=[genetics]; }; @@ -985,13 +1002,13 @@ LSAfun = derive { name="LSAfun"; version="0.4"; sha256="178lbk5f2vjcpxand15l1dlq LSC = derive { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[LICORS RColorBrewer fields gam Matrix]; }; LSD = derive { name="LSD"; version="3.0"; sha256="069p33aw6iwikp82b7b8wa77wlyjqwr4hcwvrgaxgwqdgn6jjg3k"; depends=[]; }; LSMonteCarlo = derive { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[mvtnorm fBasics]; }; -LTPDvar = derive { name="LTPDvar"; version="1.1"; sha256="0zb3ffz5vw1zabgzhpcw1mzfqh4g7r0sq4iy31nzyv8smdwddqzw"; depends=[]; }; +LTPDvar = derive { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; LTR = derive { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; }; LVMMCOR = derive { name="LVMMCOR"; version="0.01.1"; sha256="1lq4hqcg0qkywdr4a22m1fr3m97749mm6n2jzdj9i7jrf0agc1fs"; depends=[nlme MASS]; }; LVQTools = derive { name="LVQTools"; version="1.2"; sha256="06mninrrr49xsh00gfsp0vc418r6pdvq3m6sbnj0ywdyki106mni"; depends=[]; }; LaF = derive { name="LaF"; version="0.6.2"; sha256="180xsqilpkql8my0dimsxj1kpmb3jl19l6bz8li8m63zii4xmwmp"; depends=[Rcpp Rcpp]; }; Lahman = derive { name="Lahman"; version="3.0-1"; sha256="0w7vp3vjxhigyyqmmka4bw5v4pp5z3jzmf0krq8biwzrpx5qp86x"; depends=[]; }; -LakeMetabolizer = derive { name="LakeMetabolizer"; version="1.3.1"; sha256="1k764w8f30jfz1xkq9xjm9rwfdll5kp7jv3zc4932ck8cgqam3jv"; depends=[rLakeAnalyzer plyr]; }; +LakeMetabolizer = derive { name="LakeMetabolizer"; version="1.3.3"; sha256="06mgn5dgdw0gaw1za20cabs4bx6q5bgv0x09imxhskik76kini01"; depends=[rLakeAnalyzer plyr]; }; Lambda4 = derive { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; }; LambertW = derive { name="LambertW"; version="0.5.1"; sha256="0mhw748nkikaq96azps7yyzkz5glibhb8rh6f748vj9lrq3wa5mn"; depends=[moments MASS gsl]; }; Laterality = derive { name="Laterality"; version="0.9.3"; sha256="0pl5bfbkzhgxjjzzh99s6rh4jsq0pbcgc902i0z2lmmivgs5qmd6"; depends=[ade4]; }; @@ -1017,11 +1034,11 @@ LogitNet = derive { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24 LogrankA = derive { name="LogrankA"; version="1.0"; sha256="005zkpzi8h03qvqlpkygrf9xv4q77klafkfxw47x04jvkhklwigb"; depends=[]; }; LoopAnalyst = derive { name="LoopAnalyst"; version="1.2-3"; sha256="0xbiy1xa2c6acfrzh6p9pa6wrds8ipskxq0f86ia9g5zkp1rjk2j"; depends=[nlme]; }; LowRankQP = derive { name="LowRankQP"; version="1.0.2"; sha256="0is7v4cy4w1g3wn4wa32iqv4awd1nwvfcb71b3yk5wj59lpm8gs3"; depends=[]; }; -Luminescence = derive { name="Luminescence"; version="0.4.3"; sha256="11nrgi403ryjj7y1p995fxcyqz117qawyharv1yad8f33l610d5m"; depends=[XML shape rgl matrixStats raster sp zoo bbmle data_table Rcpp minpack_lm Rcpp]; }; +Luminescence = derive { name="Luminescence"; version="0.4.4"; sha256="0b7a55aqishi6jwxlpkbakfr38brjd4c61n4mcbsg6nwg7qiz1v7"; depends=[XML shape rgl matrixStats raster zoo bbmle data_table Rcpp minpack_lm Rcpp]; }; M3 = derive { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[ncdf4 rgdal maps mapdata]; }; MADAM = derive { name="MADAM"; version="1.2.2"; sha256="09w5liqa3mpkbyvkwlabcgyg2b4316qpzq7pbpl0wxl74bsh76vq"; depends=[]; }; MAINT_Data = derive { name="MAINT.Data"; version="0.4"; sha256="0338q1yh7b0mbnmh3rbli8vq0fzxyx4qxx0143p615ahsf68jw1c"; depends=[]; }; -MALDIquant = derive { name="MALDIquant"; version="1.11"; sha256="1jnpmv44j9zry64wvnv37hcda61570hypnv16z99arjazpi4nzmn"; depends=[]; }; +MALDIquant = derive { name="MALDIquant"; version="1.12"; sha256="1grlqplcz41xdr3wlmn246xs3vk8y6qqq0n92srv2crlr8fw2yg2"; depends=[]; }; MALDIquantForeign = derive { name="MALDIquantForeign"; version="0.9"; sha256="0bs6frqz462hrad16kjvbmq2s66bv3kpriav4hdz5a4klra389gl"; depends=[MALDIquant base64enc digest downloader readBrukerFlexData readMzXmlData XML]; }; MAMA = derive { name="MAMA"; version="2.2.1"; sha256="1dcyfir6jv28jzvphiqrjns3jh2zg2201iwcvjzbmddl2isk9h0i"; depends=[metaMA xtable gtools xtable]; }; MAMS = derive { name="MAMS"; version="0.4"; sha256="0v4sa8cyjdkg7lrznl7jv8xqm6qf67jf946fd6ymbd0wpd7gxrgp"; depends=[mvtnorm]; }; @@ -1051,7 +1068,7 @@ MCAvariants = derive { name="MCAvariants"; version="1.0"; sha256="08c5qpklilj41a MCDA = derive { name="MCDA"; version="0.0.8"; sha256="0zpjbshvv88dvqf6a6yw9zhzzh2j90b9yx8yg7q52c3l7a9lks6w"; depends=[Rglpk Kendall glpkAPI]; }; MCL = derive { name="MCL"; version="1.0"; sha256="1w36h4vhd525h57pz6ik3abbsrvxnkcqypl2aj1ijb6wm7nfp4ri"; depends=[expm]; }; MCMC_OTU = derive { name="MCMC.OTU"; version="1.0.8"; sha256="1bdmvwxkm162m3237bgf42dm5kp3q0giwf0avrkla8qd834gqch0"; depends=[MCMCglmm ggplot2]; }; -MCMC_qpcr = derive { name="MCMC.qpcr"; version="1.1.7"; sha256="0hqbl38r2acvwmxkx7j6lab6an90ykia4bffjmy9a319l0dps5l4"; depends=[MCMCglmm ggplot2 coda]; }; +MCMC_qpcr = derive { name="MCMC.qpcr"; version="1.2"; sha256="1v8jkxxy7z1r3l9jlshhsq6634chf30d9bb1w80iqrjfn6aamn69"; depends=[MCMCglmm ggplot2 coda]; }; MCMC4Extremes = derive { name="MCMC4Extremes"; version="1.0"; sha256="1ib3rllvqjni9xg3634ankrr66f1lj376kl3xhfwnwbfsbi4a8pw"; depends=[evir]; }; MCMCglmm = derive { name="MCMCglmm"; version="2.21"; sha256="1mjjp65w7pg2kxrx2qf0lh1kdi9d21xxj7s39zhi3q8ixw35h95r"; depends=[Matrix coda ape corpcor tensorA]; }; MCMCpack = derive { name="MCMCpack"; version="1.3-3"; sha256="0s1j3047qp2fkwdix9galm05lp7jk7qxyic6lwpbd70hmj8ggs76"; depends=[coda MASS]; }; @@ -1059,6 +1076,7 @@ MCPAN = derive { name="MCPAN"; version="1.1-15"; sha256="0811wrbp0nf4nj8kvq62ks8 MCPMod = derive { name="MCPMod"; version="1.0-8"; sha256="1kkak9x66dmannhxfdp6cybbjh2g43p03kyp7a4x1az7h4bnc92f"; depends=[mvtnorm lattice]; }; MCPerm = derive { name="MCPerm"; version="1.1.4"; sha256="0g65vzn43k6qrsglxd2kz245f662gl3c2gdz6qvvxa96v6q9lhh1"; depends=[metafor]; }; MCS = derive { name="MCS"; version="0.1.1"; sha256="0fxc5ri4ci3r5w1hdicqm1j0g6fwrl3wng7qwc2c0isagrn3vp4n"; depends=[]; }; +MCTM = derive { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; MChtest = derive { name="MChtest"; version="1.0-2"; sha256="01lflilrp42m236cznn6qgzvv5v9fzpx6wcfxp3q545bw2xmbdvj"; depends=[]; }; MConjoint = derive { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; }; MDM = derive { name="MDM"; version="1.3"; sha256="1bvjhl243rf19829ly1qc20ik937hb82lq23aiysj7ya55z8hdpf"; depends=[nnet]; }; @@ -1076,18 +1094,21 @@ MGRASTer = derive { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sab MGSDA = derive { name="MGSDA"; version="1.1"; sha256="09z066sfjvx7awxc86gfw066wlz6svj7nxkhlas63a7zfbkiz7hl"; depends=[glmnet MASS]; }; MHadaptive = derive { name="MHadaptive"; version="1.1-8"; sha256="1w3bm82v8ahxrf0vqn0pznv7dqn212drinkz8y5kr1flx423l9ws"; depends=[MASS]; }; MIICD = derive { name="MIICD"; version="2.1"; sha256="1lh3pbpxn7lbs68741ydw264qn9rap7kmcw49vnjvvzdp7hf24in"; depends=[survival MASS mstate]; }; -MIIVsem = derive { name="MIIVsem"; version="0.1"; sha256="098ybi5xdz7vvgd4vczqxm54gaq6cjsg0lxk319bx3z0da1a0bx5"; depends=[lavaan]; }; +MIIVsem = derive { name="MIIVsem"; version="0.2"; sha256="15sv6fskhdm70vyz6y6wbxw9ghwinvqad7414qkn7lgymn5fm767"; depends=[lavaan Matrix]; }; MILC = derive { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; }; MIPHENO = derive { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; }; MImix = derive { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; }; +MInt = derive { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso trust MASS testthat]; }; MKLE = derive { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; }; MKmisc = derive { name="MKmisc"; version="0.98"; sha256="0ng6n1x2x1bg60byhpk212pihh7hirbjr4s89lzrwj854z93bv5l"; depends=[RColorBrewer robustbase]; }; +MLCIRTwithin = derive { name="MLCIRTwithin"; version="1.0"; sha256="01fp2pyiwpzsby3iwn9w9ry4nksy2llwzawrmba80s5m7mrcljbn"; depends=[MASS limSolve MultiLCIRT]; }; MLCM = derive { name="MLCM"; version="0.4.1"; sha256="1g6lmw75qdiq0fshxr3sqwm1a3y4928chxkggnfwwxp8hqw4r6px"; depends=[]; }; MLDS = derive { name="MLDS"; version="0.4.3"; sha256="1vql92y2dy1ba5l5xdysqzkzvkrr4bhclmjabn49c8qb2xc2rl40"; depends=[MASS]; }; MLEcens = derive { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; MLRMPA = derive { name="MLRMPA"; version="1.0"; sha256="0gfbi70b15ivv76l3i0zlm14cq398nlny40aci3vqxxd0m2lyyx5"; depends=[ClustOfVar]; }; MLmetrics = derive { name="MLmetrics"; version="1.0.0"; sha256="05j8hwcvfrsslib5k4w3xwkllb3rxdxazsld26zpjf3dc643ag9a"; depends=[]; }; MM = derive { name="MM"; version="1.6-2"; sha256="1z7i8ggd54qjmlxw9ks686hqgm272lwwhgw2s00d9946rxhb3ffi"; depends=[magic partitions emulator Oarray]; }; +MM2S = derive { name="MM2S"; version="1.0.0"; sha256="0g5x375c58xsihj43dh19hx6vh87f8ppjibik5sb7lxvl1xms49c"; depends=[kknn lattice pheatmap]; }; MMIX = derive { name="MMIX"; version="1.2"; sha256="02c74qp48ixqh5cjp2006zgg4xz4bgxxq3csyhjl219if19kmj5m"; depends=[]; }; MMMS = derive { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[survival glmnet]; }; MMS = derive { name="MMS"; version="3.00"; sha256="06909912v2hr52s8k0a0830lbmdh05dcd7k47vydhbwq3rzf3ahg"; depends=[glmnet Matrix mht]; }; @@ -1106,7 +1127,7 @@ MPV = derive { name="MPV"; version="1.38"; sha256="1w3b0lszqmsz0yqvaz56x08xmy1m5 MRCE = derive { name="MRCE"; version="2.0"; sha256="0fnd7ykcxi04pv1af5zbmavsp577vkw6pcrh011na5pzy2xrc49z"; depends=[QUIC]; }; MRCV = derive { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; }; MRH = derive { name="MRH"; version="2.0"; sha256="0d6zfhyy8a0pjrr74lj0mcagh49pjh15yp4wa7g7j4qv8wfw5pkv"; depends=[survival KMsurv coda]; }; -MRIaggr = derive { name="MRIaggr"; version="1.1"; sha256="0yq5qjc04rgssjb8pskvrcnr3xv1dlzakily39p9ya526zm9lrmv"; depends=[Rcpp spam Matrix Rcpp RcppArmadillo]; }; +MRIaggr = derive { name="MRIaggr"; version="1.1.2"; sha256="0z410xkfyaqfrdiwkw29z7l6n15hdwd4dwbjn211sj6s90fa4q2w"; depends=[Rcpp Rcpp RcppArmadillo]; }; MRMR = derive { name="MRMR"; version="0.1.3"; sha256="1b3a4bkpcncl4sh7d81nk6b2dzhzqn9zhqdxv31jgippsqm2s3k2"; depends=[reshape2 ggplot2 lubridate lmtest plyr]; }; MRSP = derive { name="MRSP"; version="0.4.3"; sha256="0zv22xiq3qh9x3r2ckkvq1vv0vkcirh8y87053bqvw1m20j7q1by"; depends=[matrixcalc Formula]; }; MRsurv = derive { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[survival mvtnorm]; }; @@ -1120,14 +1141,14 @@ MSeasy = derive { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4 MSeasyTkGUI = derive { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; }; MSwM = derive { name="MSwM"; version="1.2"; sha256="01l23ia20y3nchykha4vz6sa757zmbvgx2315cacxfcqk9rgs08c"; depends=[nlme]; }; MTS = derive { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[Rcpp fGarch mvtnorm Rcpp]; }; -MTurkR = derive { name="MTurkR"; version="0.6"; sha256="0kmi1x9xsqwi7llgwmkmnkn2hir5r9nryhqh8lrh41fwps4la9x8"; depends=[RCurl digest XML]; }; +MTurkR = derive { name="MTurkR"; version="0.6.5.1"; sha256="0yg2ycramz0rpac4bfyq8wciyv9jl93al0qsdbzrl7c37z151w3l"; depends=[RCurl digest XML]; }; MUCflights = derive { name="MUCflights"; version="0.0-3"; sha256="03ksvv5nyzlqiml1nz405r3yqb2cl35kpm1h61zcv2nqq8cxqshs"; depends=[XML geosphere sp RSQLite NightDay]; }; MVA = derive { name="MVA"; version="1.0-5"; sha256="18x075hjqhrjwxivvrixgs6yc67il3n5p1m7v2wymcf8h2mkki91"; depends=[HSAUR2]; }; MVB = derive { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo Rcpp RcppArmadillo]; }; -MVN = derive { name="MVN"; version="3.9"; sha256="1l6bib1gl5nj7p1dk6mbmflp9p5sgm405q3l53pqmq09jm55flh6"; depends=[nortest moments MASS robustbase mvoutlier plyr psych]; }; +MVN = derive { name="MVN"; version="4.0"; sha256="1ql50ch6qig7r0xnfv5f74k3vc32k04jgmvjbndgyzbacn2ibrm7"; depends=[nortest moments MASS robustbase mvoutlier plyr psych]; }; MVR = derive { name="MVR"; version="1.20.0"; sha256="1wwzws9116ck14g6xd1svmwc9wkr8piwb24bddnzri388p8qkgb4"; depends=[statmod]; }; -MVar_pt = derive { name="MVar.pt"; version="1.0"; sha256="0wzc2r5psla8khyrkd7p8y23cxyn5bsy8vxglh2p3mpayfzi8k2a"; depends=[]; }; -MXM = derive { name="MXM"; version="0.3"; sha256="14kw4shc0jp6jrs8afimy13jssah0agwa3p5ay2py1zfid43k63y"; depends=[gRbase VGAM MASS pcalg survival]; }; +MVar_pt = derive { name="MVar.pt"; version="1.1"; sha256="0jcxsf0c9klnj19j8shiadxrbh3wa7da2vywk352ylirl5vdv2yl"; depends=[]; }; +MXM = derive { name="MXM"; version="0.3.1"; sha256="06sp6hy0dparya6fcfbiyhh0h10r8ai8fmh4rq2fz0dq6prk95ic"; depends=[]; }; MaXact = derive { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; Maeswrap = derive { name="Maeswrap"; version="1.4.11"; sha256="15i36xj2bdzhly78614077s8k2z75a1gmzl2crsfgvhyyjdax8r7"; depends=[rgl lattice geometry]; }; ManyTests = derive { name="ManyTests"; version="1.1"; sha256="11xk3j2q7w6b6ljmp7b8gni0khpmpvcvzwxypy0w8ihi2gaczsxj"; depends=[]; }; @@ -1139,11 +1160,11 @@ MasterBayes = derive { name="MasterBayes"; version="2.52"; sha256="12ka2l4x6psij MatchIt = derive { name="MatchIt"; version="2.4-21"; sha256="02kii2143i8zywxlf049l841b1y4hqjwkr1cnyv6b8b7y7lz2m5v"; depends=[MASS]; }; Matching = derive { name="Matching"; version="4.8-3.4"; sha256="04m647342j4yi74ds7ddwnyrf58qdy7k3mc067k3p779qavq2ka1"; depends=[MASS]; }; MatchingFrontier = derive { name="MatchingFrontier"; version="1.0.0"; sha256="1djlkx7ph8p60n2m191xq9i01c2by4vpmjj25mbxy5izxm5123aa"; depends=[MASS igraph segmented]; }; -Matrix = derive { name="Matrix"; version="1.2-0"; sha256="0ywz213p6cpwnklxd81hzdyxjzagaj6cn32ycc5rcnhxy30d7kk5"; depends=[lattice]; }; +Matrix = derive { name="Matrix"; version="1.2-1"; sha256="0farq1x1qhgzdwqqd4bn3g6hbv91hk5sm2v00vphf0zgj2fg2qm6"; depends=[lattice]; }; MatrixEQTL = derive { name="MatrixEQTL"; version="2.1.1"; sha256="1bvfhzhvm1psgq51kpjcpp7bidaxcrxdigmv6abfi3jk5kyzn5ik"; depends=[]; }; MatrixModels = derive { name="MatrixModels"; version="0.4-0"; sha256="1jcjsyha0xmz264g1haj7x8zpzjmp1m0jl39h5bf8r45hhlaxcsa"; depends=[Matrix]; }; MaxPro = derive { name="MaxPro"; version="3.1-2"; sha256="1y2g8a8yvzb24dj0z82nzfr6ylplb9sbi2dmj7f3pb4s3yr5zm8y"; depends=[nloptr]; }; -MazamaSpatialUtils = derive { name="MazamaSpatialUtils"; version="0.2.3"; sha256="09a7zd0jkf5gx0zybbnlzcmzhzdiwh15mjg2nfyy00lrjbhvq83i"; depends=[dplyr rgdal rgeos rvest sp stringr]; }; +MazamaSpatialUtils = derive { name="MazamaSpatialUtils"; version="0.2.4"; sha256="04ljjzcqfgy136wviz92gdavqzjhbai1v69nj4kg6vc6nwvkhnbx"; depends=[dplyr rgdal rgeos rvest sp stringr]; }; McParre = derive { name="McParre"; version="1.0.1"; sha256="16bfca867drbknzc6bylg8paa8p72l23wgjpyvy4pd9z6lpgmhdy"; depends=[MASS]; }; McSpatial = derive { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; Mcomp = derive { name="Mcomp"; version="2.05"; sha256="0wggj0h0qxjwym1vz1gk9iwnwia4lpjlk6n46l6hinsdax3g221y"; depends=[tseries forecast]; }; @@ -1167,6 +1188,7 @@ MethComp = derive { name="MethComp"; version="1.22.2"; sha256="0f9l36d00x054yqgb Methplot = derive { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; }; Metrics = derive { name="Metrics"; version="0.1.1"; sha256="1yqhlsmhh9sl7qngl85b7qb980s54h13wwznpakyvvwlar64yqrw"; depends=[]; }; MfUSampler = derive { name="MfUSampler"; version="0.9.1"; sha256="0fw1jw2ljsxmvnaayn7zdrrsnbbkkb5n9nm396321p36bqkf1pk3"; depends=[ars]; }; +MiRSEA = derive { name="MiRSEA"; version="1.0"; sha256="1azabfwd83x6g3fpwdqss5b0rxj8zfmj9972bd0brk8z39wggsrr"; depends=[]; }; MiST = derive { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; }; MicSim = derive { name="MicSim"; version="1.0.8"; sha256="0i9vyim7wfnaf1zcs1vz6yc7xkr1hzhqcccbcvg15vkzhr23f8lg"; depends=[chron snowfall rlecuyer]; }; MicroDatosEs = derive { name="MicroDatosEs"; version="0.6.3.1"; sha256="17ka9bdic8vdr0aabmgm216zm9a8jppxll042b5ric4vzplah17d"; depends=[memisc Hmisc]; }; @@ -1178,9 +1200,9 @@ MissMech = derive { name="MissMech"; version="1.0.2"; sha256="1b7i1balfl1cqr3l4l MissingDataGUI = derive { name="MissingDataGUI"; version="0.2-2"; sha256="07a3y8l0r7a0f7zmp5pg2aqkf7hyk8cf562x3m8b38w96vir4vr0"; depends=[gWidgetsRGtk2 ggplot2 GGally cairoDevice reshape]; }; MitISEM = derive { name="MitISEM"; version="1.0"; sha256="03305ds3rgr29z4idaxzsm83igiygna2sqd5vpixklngsrp8w341"; depends=[mvtnorm]; }; MixAll = derive { name="MixAll"; version="1.0.2"; sha256="10jwiri659i2h0gkaxc41gjvff4v465syxr0nppn1qqz5910jql0"; depends=[rtkpp Rcpp rtkpp]; }; -MixGHD = derive { name="MixGHD"; version="1.5"; sha256="1wjjz300yr9mj5kwrpybdji0znqrh26i2jlhbjcxkn3j4frkhlh3"; depends=[MASS mclust Bessel mvtnorm ghyp numDeriv mixture]; }; +MixGHD = derive { name="MixGHD"; version="1.6"; sha256="0lmv1yspjn9m5kw0zd2sabgy33zd77p0nqfvs9cvy3ldvz35095i"; depends=[MASS mclust Bessel mvtnorm ghyp numDeriv mixture]; }; MixMAP = derive { name="MixMAP"; version="1.3.1"; sha256="0m6m9wi0ain7z96s6z6kmwjisfqm3al6m459y5zr2l1cdbdpxfpv"; depends=[lme4]; }; -MixSim = derive { name="MixSim"; version="1.0-9"; sha256="16kg12784z82x8f1vscv9d5yakmki2m8gqr4hy9417c31xfkk3zy"; depends=[MASS]; }; +MixSim = derive { name="MixSim"; version="1.1-1"; sha256="1a1hrsnm6zv9vag7hq8plrkjr4ak26w7k58wdkgxsjb9r6qzm1yf"; depends=[MASS]; }; MixedTS = derive { name="MixedTS"; version="1.0.1"; sha256="0ljal2jxscwrv439blavf5gjxbi3k3jfqqmwblzfvc05dqgvdk0b"; depends=[MASS]; }; MixtureInf = derive { name="MixtureInf"; version="1.0-1"; sha256="1cq8zzhhb6vg545n9aw1b9fhx025zy75dd6pw161svsb5776py5d"; depends=[]; }; Mobilize = derive { name="Mobilize"; version="2.16-4"; sha256="16vdvpwspa0igb52zvzyk0if9l4wq1hm8y42572i8sh1m82wyyfs"; depends=[Ohmage ggplot2 wordcloud reshape2]; }; @@ -1196,15 +1218,15 @@ MortalitySmooth = derive { name="MortalitySmooth"; version="2.3.4"; sha256="1clx MplusAutomation = derive { name="MplusAutomation"; version="0.6-3"; sha256="1zb4drqaswzwssky1bp69p3p8inqfdvxg2ji9bjrzf3vf0b5fl4p"; depends=[boot plyr gsubfn coda xtable lattice texreg]; }; Mposterior = derive { name="Mposterior"; version="0.1.2"; sha256="16a7wvg41ld2bhbss480js5h12r41nl7jmc3y4jsbv1lr5py4ymy"; depends=[Rcpp Rcpp RcppArmadillo]; }; MuFiCokriging = derive { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; -MuMIn = derive { name="MuMIn"; version="1.13.4"; sha256="1zk8glw5laismhhfgkbxk05qjmzv80bkp3ib45x7i05s2mqy1yxn"; depends=[]; }; +MuMIn = derive { name="MuMIn"; version="1.14.0"; sha256="0zwwwp7979kss5871vp6975maqm8gsc0hn75fxq90l0xcyipxvcy"; depends=[Matrix]; }; MultEq = derive { name="MultEq"; version="2.3"; sha256="0fshv7i97q8j7vzkxrv6f20kpqr1kp9v6pbw50g86h37l0jghj7r"; depends=[]; }; MultNonParam = derive { name="MultNonParam"; version="1.0"; sha256="0xff81wjmyw2d38r0v3n7vv0dasg9rlrc0zrdwsmfd83zpvxqj5m"; depends=[]; }; MultiCNVDetect = derive { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; -MultiJoin = derive { name="MultiJoin"; version="0.1"; sha256="02wdn2rcci4n553jjd7ivw3afp6w6zcjc002yj0pvi0ai3jw6p92"; depends=[]; }; MultiLCIRT = derive { name="MultiLCIRT"; version="2.9"; sha256="0anb041nd56rrryhv5w1pb0axxsfkqas177r6yf5h5gbc4vn3758"; depends=[MASS limSolve]; }; MultiMeta = derive { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[gtable mvtnorm expm ggplot2 reshape2]; }; MultiOrd = derive { name="MultiOrd"; version="2.1"; sha256="12y5cg06qyaz72gk3bi5pqkd55n72rz056y9va49znlsqph09x2x"; depends=[mvtnorm corpcor Matrix psych]; }; MultiPhen = derive { name="MultiPhen"; version="2.0.0"; sha256="05w7khzyxswlsz4sxhaakbz828zrdya1y8qcsdfc6w7wgl8qpmj9"; depends=[MASS abind epitools meta HardyWeinberg RColorBrewer gplots]; }; +MultiRR = derive { name="MultiRR"; version="1.0"; sha256="0m2v13cygabjbsz0fwxwh03csd3yfdpzk4yfvx8lrim9m90026hz"; depends=[MASS lme4]; }; MultiSV = derive { name="MultiSV"; version="0.0-67"; sha256="0924lvkx12aqjxxz8bwqdi4h9xc2acf8aynllx0m45ip5r4gh1g2"; depends=[nlme reshape]; }; Multiclasstesting = derive { name="Multiclasstesting"; version="1.3.9"; sha256="09y3gnarqv15wgmk545qrwpjwb2ilv2b2kc74cxzcb2p1lflfjzm"; depends=[]; }; MultinomialCI = derive { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; }; @@ -1217,17 +1239,18 @@ NB = derive { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx NBDdirichlet = derive { name="NBDdirichlet"; version="1.01"; sha256="07j9pcha6clrji8p4iw466hscgs6w43q0f7278xykqcdnk39gkyv"; depends=[]; }; NBPSeq = derive { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[]; }; NCmisc = derive { name="NCmisc"; version="1.1.4"; sha256="0hbrad72lzp0vi0j9lvpmvdih7vijqghqng1f0hjd8fg8hjvcflg"; depends=[proftools dplyr]; }; -NEff = derive { name="NEff"; version="1.0"; sha256="0ksnmxjy2ms2z7rq4rddnykydwlb4f9c13nak5f8m65pfjcgv3sk"; depends=[msm bit]; }; -NHANES = derive { name="NHANES"; version="1.0"; sha256="18sy2x61bnily3fz0rs61y44kn6y2ikgrzr6nhgm6fkqv02ffdg8"; depends=[]; }; +NEff = derive { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[msm bit]; }; +NHANES = derive { name="NHANES"; version="2.0"; sha256="0bdsccr1g2vnisllnmj2z4sma5hdp2iqm1fpr0kmbv1dnkpmxd41"; depends=[]; }; NHEMOtree = derive { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[partykit emoa sets rpart]; }; NHMM = derive { name="NHMM"; version="3.5"; sha256="03il5y6vz5zyadydhk3qg6sd6fmsw7md9if1igyy9643mxxm1g0f"; depends=[BayesLogit msm MCMCpack MASS Rcpp Rcpp]; }; +NHMSAR = derive { name="NHMSAR"; version="1.1"; sha256="1qbgxb684qwcb29x95a48r6bndqwdi1drwzimkhkb2ldm98yga3z"; depends=[ucminf lars SIS caTools glasso]; }; NHPoisson = derive { name="NHPoisson"; version="3.1"; sha256="1gr682kxgw227yqw9w0iw9lrijsz5iszhnfk0mdhi6m1w9s28kcn"; depends=[car]; }; NISTnls = derive { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; NISTunits = derive { name="NISTunits"; version="1.0.0"; sha256="156rk3wams52lw3inf55s9v7mi5x29mmb41p8kvryimnzgi904ca"; depends=[]; }; NLP = derive { name="NLP"; version="0.1-7"; sha256="1r7m6mq7i6xcf2qxzwvwx129fq89gx6f8kxqn76iw5a5nfarq87w"; depends=[]; }; NLPutils = derive { name="NLPutils"; version="0.0-2"; sha256="1ny1q4b4pd1pl6d3lgv9zfkrw5wjd6pvhwlahj82fr1z3nq46bwb"; depends=[NLP SnowballC qdap]; }; NLRoot = derive { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; -NMF = derive { name="NMF"; version="0.20.5"; sha256="1j91vklzi4qjlix5sn9qh86dwx6vxnla2p4ag81apkr441jkvynr"; depends=[pkgmaker registry rngtools cluster stringr digest gridBase colorspace RColorBrewer foreach doParallel ggplot2 reshape2]; }; +NMF = derive { name="NMF"; version="0.20.6"; sha256="0mmh9bz0zjwd8h9jplz4rq3g94npaqj8s4px51vcv47csssd9k6z"; depends=[pkgmaker registry rngtools cluster stringr digest gridBase colorspace RColorBrewer foreach doParallel ggplot2 reshape2]; }; NMFN = derive { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; NMOF = derive { name="NMOF"; version="0.34-2"; sha256="1hqq0gypry614jfc8hcagwkf6xz6z98pb9hzkl9ygykv4rfs5bms"; depends=[]; }; NNTbiomarker = derive { name="NNTbiomarker"; version="0.28"; sha256="1y9lkn12a7p1qwi10pzzidhjgkzazn6lfflihnc46phf6yzgdrs6"; depends=[shiny xtable stringr]; }; @@ -1293,9 +1316,10 @@ OligoSpecificitySystem = derive { name="OligoSpecificitySystem"; version="1.3"; OmicKriging = derive { name="OmicKriging"; version="1.3"; sha256="1fj131684faj75jdipmsvb8s684x72is6zz79hwb5wszklk00ind"; depends=[doParallel ROCR irlba]; }; Oncotree = derive { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; }; OneTwoSamples = derive { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; -OpasnetUtils = derive { name="OpasnetUtils"; version="1.1.0"; sha256="1a7j96pg0v8j527m0w48k8lxwb2ynrqq1y7140bi1ciq0466azx3"; depends=[rjson RCurl reshape2 triangle httpRequest digest xtable ggplot2 rgdal sp]; }; +OpasnetUtils = derive { name="OpasnetUtils"; version="1.2.0"; sha256="1ckagq14w9923a4x7pk9mfzqcfayi00apwd2kvqzgd0s6355r1q7"; depends=[rjson RCurl reshape2 triangle httpRequest digest xtable ggplot2 rgdal sp plyr]; }; OpenCL = derive { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; }; OpenMPController = derive { name="OpenMPController"; version="0.1-2"; sha256="1cpsbjmqql0fsjc1xv323pfkhfr9vrcv5g4j3p1qc5zn4z9pq7r6"; depends=[]; }; +OpenMx = derive { name="OpenMx"; version="2.2.4"; sha256="1w72ikysda45zbvwlr297fqqjl3law2r6m3c9n9j5d8r3clfhqyl"; depends=[digest MASS RcppEigen StanHeaders BH]; }; OpenRepGrid = derive { name="OpenRepGrid"; version="0.1.9"; sha256="1s40c2yfd4a4khs0ghlbzii94x8cidg851bivanplg2s51j5jrhk"; depends=[pvclust colorspace plyr stringr abind rgl GPArotation psych XML]; }; OpenStreetMap = derive { name="OpenStreetMap"; version="0.3.1"; sha256="009xiqsbgqb3lba6msyzq7ncripmvpymxynkga8pqc8npv8g7fzb"; depends=[rJava raster rgdal rJava]; }; OptHedging = derive { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; @@ -1312,7 +1336,7 @@ OutbreakTools = derive { name="OutbreakTools"; version="0.1-13"; sha256="0wwb43n OutlierDC = derive { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[survival quantreg Formula]; }; OutlierDM = derive { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[quantreg MatrixModels outliers pcaPP]; }; OutrankingTools = derive { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; -P2C2M = derive { name="P2C2M"; version="0.6"; sha256="00m4dmvnvbjbxxqi9ai2zd33cwlsb7ghjbswz256w5iab4c0ls02"; depends=[ape apTreeshape ggplot2 rPython stringr]; }; +P2C2M = derive { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; }; PAFit = derive { name="PAFit"; version="0.7.2"; sha256="047ajzb9xnhxqa9v5dggznix9rd9z66g0mzanzwqb8ds5f8gm8ls"; depends=[Rcpp Rcpp]; }; PAGI = derive { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; PAGWAS = derive { name="PAGWAS"; version="1.0"; sha256="1zwq4b0bgsskzvlapffh30ys9y4wlcfwpjqw8m2i9zabib5knx9i"; depends=[lars doMC mnormt]; }; @@ -1339,7 +1363,7 @@ PCS = derive { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kw PCovR = derive { name="PCovR"; version="2.6"; sha256="0b1bbf6namll2afxh61qz4xz4ipzipdnfhbcqlragmyj9pisaf45"; depends=[GPArotation ThreeWay MASS Matrix]; }; PDQutils = derive { name="PDQutils"; version="0.1.1"; sha256="0klzh7ilgs02i0cvb5j6jd65dxyg2c3yk5rc82wcjn9ixhr8ks9b"; depends=[orthopolynom moments]; }; PDSCE = derive { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; }; -PEIP = derive { name="PEIP"; version="1.7"; sha256="1bagi1kr8vd3b3r524vrk747bqmd9insny1nxj8bdvdk0a9yr949"; depends=[bvls Matrix RSEIS pracma]; }; +PEIP = derive { name="PEIP"; version="2.0-1"; sha256="0zfvp3ngc4320sh6r6y746zxigr2wqgaqasnlkv3hxhzpzxq08lj"; depends=[bvls Matrix RSEIS pracma]; }; PEMM = derive { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; }; PERregress = derive { name="PERregress"; version="1.0-8"; sha256="1rhridhfgvrz14h61psfyr5ll13fvxj4b9fwrnlnc6lyqi01wjlc"; depends=[]; }; PET = derive { name="PET"; version="0.4.9"; sha256="1ijg6mfh3xrc1gjh6a4nq64psk9yh16yc8nfp7c9837xbjigqq7f"; depends=[adimpro]; }; @@ -1367,7 +1391,7 @@ PMA = derive { name="PMA"; version="1.0.9"; sha256="11qwgw4sgzl3xhrm468bsza83h3m PMCMR = derive { name="PMCMR"; version="1.1"; sha256="0f3882rjyxlcr183qa9y22bxh8nqp307v065aiy61ii0kizj9f70"; depends=[]; }; PP = derive { name="PP"; version="0.5.3"; sha256="17y1v2536n7ap0kvllwkmndmdjf4wgwl171c053ph45krv37mscf"; depends=[Rcpp Rcpp]; }; PPtree = derive { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; -PPtreeViz = derive { name="PPtreeViz"; version="1.0.1"; sha256="0010ixyxgal7q5vwpsslvw6p6bb8qkhbysh41rf0ymdwn37p085p"; depends=[gridExtra ggplot2 Rcpp reshape2 Rcpp RcppArmadillo]; }; +PPtreeViz = derive { name="PPtreeViz"; version="1.0.3"; sha256="0m0nw6kh8ybgdih2d10b8q8q0wknrbppad8nq8jmq85sm0xrrysj"; depends=[gridExtra ggplot2 Rcpp reshape2 Rcpp RcppArmadillo]; }; PRISMA = derive { name="PRISMA"; version="0.2-5"; sha256="06z4z1rbsk5a8kpbs6ymm0m02i8dwbmv783c3l2pn4q3pf6ncmd5"; depends=[Matrix gplots ggplot2]; }; PROFANCY = derive { name="PROFANCY"; version="1.0"; sha256="11a0fpsv1hy0djv36x2i2hv2j50ryy0x7g7nn7vv76m1sl6q6r4b"; depends=[Matrix lattice igraph]; }; PROTOLIDAR = derive { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; }; @@ -1383,6 +1407,7 @@ PTAk = derive { name="PTAk"; version="1.2-9"; sha256="1wbjak8dp53601z39kkpa4ysm2 PTE = derive { name="PTE"; version="1.0"; sha256="10if2hh69yysi2y82m7is74hmzw2xpxijgb8bhy1d4g9n9lqidfs"; depends=[doParallel]; }; PVAClone = derive { name="PVAClone"; version="0.1-2"; sha256="0afl2il5wdcwzpyhjkgq8iz16q1086c3ndr4cjlyspgbss9h5l24"; depends=[dcmle dclone]; }; PVR = derive { name="PVR"; version="0.2.1"; sha256="1p87pj9g0qlc8ja6xdj2amny9pbkaqb34x2y9nkl1nj1pkwjq2s5"; depends=[ape splancs]; }; +Pade = derive { name="Pade"; version="0.1-2"; sha256="144wzwh5wy9hmxd4ng6k601ppvdbqn6hrx210kj266dlapwyg8l2"; depends=[]; }; PairViz = derive { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[TSP gtools]; }; PairedData = derive { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[MASS gld mvtnorm lattice ggplot2]; }; Paneldata = derive { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; @@ -1397,7 +1422,7 @@ PearsonDS = derive { name="PearsonDS"; version="0.97"; sha256="0bsdj4zir12zkv8yh PearsonICA = derive { name="PearsonICA"; version="1.2-4"; sha256="0jkbqha1nb9pf72ffki47wymsdmd50smkdhvpzvanv4y2rmqfhvg"; depends=[]; }; PedCNV = derive { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[Rcpp RcppArmadillo ggplot2 Rcpp RcppArmadillo]; }; PepPrep = derive { name="PepPrep"; version="1.1.0"; sha256="1s2xn05xry50l9kf1mj6yd1dpc7yp6g3d00960hswvhznb0a4l84"; depends=[stringr]; }; -Peptides = derive { name="Peptides"; version="1.0.4"; sha256="0qpppbdsz7c3dw6l5m3sxggma4xxdx0vflwlxpa0d7wynqpsn3wn"; depends=[]; }; +Peptides = derive { name="Peptides"; version="1.1.0"; sha256="0nfldckrb9cvxnzqkhqr06d8a5nna5b900439x49r8njcwr4xpcg"; depends=[]; }; PerFit = derive { name="PerFit"; version="1.3.1"; sha256="0zmhafr5fk3z66cp46gasgcxcza2q02821sg8zcs0vk5k80md9a7"; depends=[ltm mirt fda Hmisc irtoys MASS Matrix]; }; PerMallows = derive { name="PerMallows"; version="1.8"; sha256="1p0rnphhjc0rr1zpbff71mk75lnyph994k4p5whwn2fyfzi1pn0f"; depends=[Rcpp Rcpp]; }; PerfMeas = derive { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[]; }; @@ -1416,6 +1441,8 @@ PogromcyDanych = derive { name="PogromcyDanych"; version="1.5"; sha256="1m6sycca PoiClaClu = derive { name="PoiClaClu"; version="1.0.2"; sha256="1j593sc344h9iy7if1ppihx2qd73dv32d77d8ckac43i7b2lig24"; depends=[]; }; PoisBinNonNor = derive { name="PoisBinNonNor"; version="1.0"; sha256="0a2v5iwrglg4r6zj5qbbg66638kcf45mxw2gs3qv2zpnfkabadnq"; depends=[BB corpcor Matrix mvtnorm]; }; PoisBinOrd = derive { name="PoisBinOrd"; version="1.1"; sha256="151qqxd2rgh6jxzpclxxa51apiif77j122r2w23bdijkb85sqy9z"; depends=[corpcor GenOrd Matrix mvtnorm]; }; +PoisBinOrdNonNor = derive { name="PoisBinOrdNonNor"; version="1.0"; sha256="1x41mwvdria48cjr3dyq4d0l8v8kp3v9aayfl6jfxy6dhjwdg4vz"; depends=[Matrix corpcor MASS GenOrd BB]; }; +PoisBinOrdNor = derive { name="PoisBinOrdNor"; version="1.0"; sha256="0big81yvbz9qyw4h6h1ak2wzvn56g1d1809m7lnmd2kx780i2hsf"; depends=[Matrix corpcor mvtnorm psych GenOrd]; }; PoisNonNor = derive { name="PoisNonNor"; version="1.0"; sha256="1i00knyv5m6p9rllkc440cg2agzs36am5b5w9n90506nq36xp8qm"; depends=[BB corpcor MASS Matrix]; }; PoisNor = derive { name="PoisNor"; version="1.0"; sha256="147ma6qg6nwxzp022jm5mpijhg3jz489qclr9g2mli5mhgm31f8j"; depends=[mvtnorm corpcor Matrix]; }; PoissonSeq = derive { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; }; @@ -1432,12 +1459,12 @@ PortfolioAnalytics = derive { name="PortfolioAnalytics"; version="1.0.3636"; sha PottsUtils = derive { name="PottsUtils"; version="0.3-2"; sha256="05ds0a7jq63zxr3jh66a0df0idzhis76qv6inydsjk2majadj3zv"; depends=[miscF]; }; PoweR = derive { name="PoweR"; version="1.0.4"; sha256="00y0dvrsbvz8mr8mdw7fk17s5dfgm0f641qg96039y6g3hk2rn77"; depends=[Rcpp Rcpp RcppArmadillo]; }; Power2Stage = derive { name="Power2Stage"; version="0.3-1"; sha256="0a5llzbhl6s71bh21ka2x50pjissl9gg7f5sskailzcmi60yz2zk"; depends=[PowerTOST]; }; -PowerTOST = derive { name="PowerTOST"; version="1.2-06"; sha256="1amzc0229cwydvnbw59aah52krswdx4k20n6i23vqimmxb26kc64"; depends=[mvtnorm]; }; -PracTools = derive { name="PracTools"; version="0.1"; sha256="0d8m326p41xqr4ndizp5x6qq5h55wgc7yinb6jsxi4xhfd2kiwq5"; depends=[]; }; +PowerTOST = derive { name="PowerTOST"; version="1.2-07"; sha256="0d8nbha0jwkz4phiddpfm32kf8hjrkck05y3w60f40110j9f8yy7"; depends=[mvtnorm]; }; +PracTools = derive { name="PracTools"; version="0.2"; sha256="1njnm0rk2z9p3p8wsj881mddqhpayh56gyyis4cwb5b6pc344s9p"; depends=[]; }; PredictABEL = derive { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[Hmisc ROCR epitools PBSmodelling]; }; PredictiveRegression = derive { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; }; PresenceAbsence = derive { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; }; -PrevMap = derive { name="PrevMap"; version="1.1.4"; sha256="1m5a71s6j6x4kmqij1v7wikblk0a0l9lbskrj6q2znwj0hnbk1wy"; depends=[geoR maxLik raster pdist splancs]; }; +PrevMap = derive { name="PrevMap"; version="1.1.5"; sha256="0bzk09ygz4i3v8s39p0n157wrylp38h5xz32f18py8gr776x311n"; depends=[geoR maxLik raster pdist splancs]; }; PrivateLR = derive { name="PrivateLR"; version="1.2-21"; sha256="1jwq8f0dnngj8sfbmcmxy34nkkq6yjw0mq3w1f8rasz67v3bwzp3"; depends=[]; }; ProDenICA = derive { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; ProbForecastGOP = derive { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[RandomFields fields]; }; @@ -1457,7 +1484,7 @@ PwrGSD = derive { name="PwrGSD"; version="2.000"; sha256="0qxvws9mfrnqw5s24qhqk6 QCA = derive { name="QCA"; version="1.1-4"; sha256="0wg2yfg61bmcxmkxvm9zjrnz4766f176y4gyqvfp5hsp9pp0h2lm"; depends=[lpSolve]; }; QCA3 = derive { name="QCA3"; version="0.0-7"; sha256="0i9i2i633sjnzsywq51r2l7fkbd4ip217hp0vnkj78sfl7zf1270"; depends=[lpSolveAPI]; }; QCAGUI = derive { name="QCAGUI"; version="1.9-6"; sha256="020ngni02j2w2ylhyidimm51d426pym2g1hg7gnpb7aplxx67n6x"; depends=[abind QCA]; }; -QCAfalsePositive = derive { name="QCAfalsePositive"; version="1.0"; sha256="0rv2pfaj5fh8zva47k2r2rwzpnilj48jigaazkw2ibs8zq5f3qwz"; depends=[]; }; +QCAfalsePositive = derive { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; QCAtools = derive { name="QCAtools"; version="0.1"; sha256="1fcssxpyw0kfm6xgihkv4qxqmg628ahfr1bk36b9di9d29w6vgn9"; depends=[stringr QCA ggplot2 directlabels]; }; QCGWAS = derive { name="QCGWAS"; version="1.0-8"; sha256="1wn1kddgfmqv326pihnavbgsbd2yxrlq5s2xgi6kbprssxvj8bk1"; depends=[]; }; QRM = derive { name="QRM"; version="0.4-10"; sha256="1fkxjqyb9yqki4qwk393ra66wg5dnbr5b5sgypm8wk973crbhcj0"; depends=[gsl Matrix mvtnorm numDeriv timeSeries Rcpp mgcv Rcpp]; }; @@ -1471,18 +1498,18 @@ QualInt = derive { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdc Quandl = derive { name="Quandl"; version="2.6.0"; sha256="1mz39sj7dxfh9p5kdq7bxlifbg9izqz04l3ilnfchva7qq1ij01q"; depends=[xts httr zoo]; }; QuantPsyc = derive { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; }; QuantifQuantile = derive { name="QuantifQuantile"; version="2.1"; sha256="1d3dcpri8d98mn2c0nfipp1pdr67a8h35p0y7bdil6il71h4qldm"; depends=[rgl]; }; -QuasiSeq = derive { name="QuasiSeq"; version="1.0-6"; sha256="0hv6fmw8kqdg82nwdiqb9naryw4x42rv9xw1zmahgqyxr9ffnrgr"; depends=[Matrix mgcv]; }; +QuasiSeq = derive { name="QuasiSeq"; version="1.0-8"; sha256="113pxmvwwn331g5dcv2zwsvvi5jgc1v41f38sw9gms06i8x3a7q6"; depends=[mgcv pracma]; }; Quor = derive { name="Quor"; version="0.1"; sha256="1ncl4pj472m881fqndcm6jzn4jkwbnzpc639c9vy5mxa4z569i1g"; depends=[combinat]; }; R_cache = derive { name="R.cache"; version="0.10.0"; sha256="0y8q3w9z9cyzsg60x95kkc81ksc2d5vpdaqg5njq5bgjyw7yjqvs"; depends=[R_methodsS3 R_oo R_utils]; }; R_devices = derive { name="R.devices"; version="2.13.0"; sha256="1ys4sxns2y5cgqb18scclsv99jfkyy3l9mq0jcnh76c48gpzaisp"; depends=[R_methodsS3 R_oo R_utils base64enc]; }; -R_filesets = derive { name="R.filesets"; version="2.7.1"; sha256="0awvjqkk5h8wzbdgn255m3gy3w5dsnlqp4wj7gzqgqm5mwg4jdyh"; depends=[R_oo R_methodsS3 R_utils R_cache digest]; }; +R_filesets = derive { name="R.filesets"; version="2.7.2"; sha256="0jlbpvj1ijjknjrb48x26c1ngkv7gl42fmk5g9sqaivm69d76nav"; depends=[R_oo R_methodsS3 R_utils R_cache digest]; }; R_huge = derive { name="R.huge"; version="0.9.0"; sha256="13p558qalv60pgr24nsm6mi92ryj65rsbqa6pgdwy0snjqx12bgi"; depends=[R_methodsS3 R_oo R_utils]; }; R_matlab = derive { name="R.matlab"; version="3.2.0"; sha256="1c87m6pv62ciqwpmsp8l7rkixcv04s9nkdn4yjbgyqvcslfaw26m"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive { name="R.methodsS3"; version="1.7.0"; sha256="1dg4bbrwr8jcsqisjrrwxs942mrjq72zw8yvl2br4djdm0md8zz5"; depends=[]; }; R_oo = derive { name="R.oo"; version="1.19.0"; sha256="15rm1qb9a212bqazhcpk7m48hcp7jq8rh4yhd9c6zfyvdqszfmsb"; depends=[R_methodsS3]; }; R_rsp = derive { name="R.rsp"; version="0.20.0"; sha256="06vq9qq5hdz3hqc99q82622mab6ix7jwap20h4za6ap6gnwqs0fv"; depends=[R_methodsS3 R_oo R_utils R_cache]; }; -R_utils = derive { name="R.utils"; version="2.0.2"; sha256="1bqykygqbgx2wwqypvgj9siyiqa77cbchjnqw0qgg1rg8q2ldw65"; depends=[R_oo R_methodsS3]; }; -R0 = derive { name="R0"; version="1.2-5"; sha256="13f0dvxf1gz9j8ih1n8giyhb4s7nrh1r7ncc5smvh06kjgr5b341"; depends=[MASS]; }; +R_utils = derive { name="R.utils"; version="2.1.0"; sha256="03pi6pkcsq65fv7cn4x74cj050dc8x5d4xyg930p6f7flk788xaz"; depends=[R_oo R_methodsS3]; }; +R0 = derive { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; R1magic = derive { name="R1magic"; version="0.3.2"; sha256="1xfldr5y7pfdi6qljjvckknsv2wi9rnzwmqxkpgnyc96md2fvwjr"; depends=[]; }; R2BayesX = derive { name="R2BayesX"; version="1.0-0"; sha256="1p60n14gaqciskzah5haskflpms1g5lh4n57653yysa7fvmfgdhw"; depends=[BayesXsrc colorspace mgcv]; }; R2Cuba = derive { name="R2Cuba"; version="1.0-11"; sha256="1kgcxqn83yskh0dv6vyz66d0z32qy55par36jj987qglpl25zmax"; depends=[]; }; @@ -1493,7 +1520,7 @@ R2MLwiN = derive { name="R2MLwiN"; version="0.8-1"; sha256="0gkp5jvvbf9rppxirs1s R2OpenBUGS = derive { name="R2OpenBUGS"; version="3.2-3.1"; sha256="1nnyfhpqgx6wd4n039c4d42png80b2xcwalyj08bmq0cgl32cjgk"; depends=[coda boot]; }; R2STATS = derive { name="R2STATS"; version="0.68-38"; sha256="1v8mvkvs4fjch0dpjidr51jk6ynnw82zhhylyccyrad9f775j2if"; depends=[proto Matrix lattice lme4 cairoDevice gWidgets gWidgetsRGtk2 RGtk2Extras MASS latticeExtra statmod]; }; R2SWF = derive { name="R2SWF"; version="0.9"; sha256="0c3lkmm8wgpix3fv7dxql6zpklwbcsv1y30r26yws12fnavw4y1k"; depends=[sysfonts]; }; -R2WinBUGS = derive { name="R2WinBUGS"; version="2.1-19"; sha256="03bvxv46lhhnbfjq3w5ig50icncwn1bdq7lsh6w1szdk90ah2zgh"; depends=[coda boot]; }; +R2WinBUGS = derive { name="R2WinBUGS"; version="2.1-20"; sha256="052frb3qlqfy6zl0qd2a9d4w2s7prfvdb0vn45rns68q03dma1ml"; depends=[coda boot]; }; R2admb = derive { name="R2admb"; version="0.7.13"; sha256="0sjli498pz1vk5wmw65mca08mramwhzlfli2aih15xj7qzvp0nky"; depends=[coda lattice]; }; R2jags = derive { name="R2jags"; version="0.5-6"; sha256="0zknl9qrypp96qz6rx7bkxg7bslvsnlhrgh749q4q566fz944n1g"; depends=[rjags abind coda R2WinBUGS]; }; R330 = derive { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[s20x leaps rgl lattice]; }; @@ -1503,7 +1530,7 @@ R4dfp = derive { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0a R6 = derive { name="R6"; version="2.0.1"; sha256="0ngm3hl0q3aj067q6q0iqh729z8jx3ydvasj1jw9qrr7bzjh1jn5"; depends=[]; }; RAD = derive { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[mvtnorm MASS]; }; RADami = derive { name="RADami"; version="1.0-3"; sha256="0rg07dsh2rlldajcj0gq5sgsl1i3qa28bsrmq88xcljg5hnr4iqn"; depends=[ape geiger phangorn]; }; -RAM = derive { name="RAM"; version="1.2.0"; sha256="1xf296a2xqv9nq3m5lswnbfy023s6dp0yv8y0hr8xq0mw9mym3v3"; depends=[vegan ggplot2 gridExtra RColorBrewer gplots plyr reshape2 scales labdsv ggmap permute VennDiagram data_table FD MASS RgoogleMaps ape lattice reshape]; }; +RAM = derive { name="RAM"; version="1.2.1"; sha256="11ymhx0nk113cy068s52hjj38y8glv8nh24yljqqvr1fd9fmy64g"; depends=[vegan ggplot2 ape gridExtra RColorBrewer gplots plyr reshape2 scales labdsv ggmap permute VennDiagram data_table FD MASS RgoogleMaps lattice reshape ade4 phangorn phytools Hmisc]; }; RAMP = derive { name="RAMP"; version="1.0"; sha256="18cz8gvb49j1hic71dzfcl17hz5gjdcabqvq84yr1h7iqkrq95cq"; depends=[]; }; RAMpath = derive { name="RAMpath"; version="0.3.8"; sha256="1p1l6iirb314n5246kyyz0r3ja4v05xb5a6aq9k26wsb5m42x85k"; depends=[lavaan ellipse]; }; RANN = derive { name="RANN"; version="2.5"; sha256="007cgqg9bybg2zlljbv5m6cmlm3r6i251018rpgjcn0xnm9sjsj7"; depends=[]; }; @@ -1530,7 +1557,7 @@ RCryptsy = derive { name="RCryptsy"; version="0.2"; sha256="1sm6l2jbaxia53dqivii RCurl = derive { name="RCurl"; version="1.95-4.6"; sha256="145li081kqa07w3bzb5zaad6jkr3zr0hcpkjwar76ybrvc4jyi4s"; depends=[bitops]; }; RDIDQ = derive { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive { name="RDML"; version="0.8-4"; sha256="0zrzi81rlxz8hrpz19g7v470fh930n5y6brn6mjq52shn0ap742m"; depends=[R6 assertthat XML plyr dplyr]; }; -RDS = derive { name="RDS"; version="0.7-1"; sha256="1vkrplzak95yqykrxgzjxgvyb4g255rnk6msh1yi5mgrd32f0gdl"; depends=[gridExtra ggplot2 Hmisc igraph reshape2 scales]; }; +RDS = derive { name="RDS"; version="0.7-2"; sha256="143pb13wg0ms9zaiilb3ylqj6r6bcy4iqbq19j57z33i1q6ll51c"; depends=[gridExtra ggplot2 igraph reshape2 scales]; }; RDSTK = derive { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr rjson RCurl]; }; RDataCanvas = derive { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; }; RDieHarder = derive { name="RDieHarder"; version="0.1.3"; sha256="0wls7b0qfbi6hsq9xdywi4mdhim5b6mrzhvyrm9dxp9z1k7imz6m"; depends=[]; }; @@ -1541,12 +1568,13 @@ REDCapR = derive { name="REDCapR"; version="0.7-1"; sha256="1r5vvl52z5gpqhq949fz REEMtree = derive { name="REEMtree"; version="0.90.3"; sha256="01sp36p12ky8vgsz6aik80w4abs70idr9sn4627lf94r92wwwsbc"; depends=[nlme rpart]; }; REPPlab = derive { name="REPPlab"; version="0.9.1"; sha256="1yrw03p7rk5dbr23z343kxn7vbac8khcz4c718wq9w6sykhgv8d0"; depends=[rJava lattice]; }; REQS = derive { name="REQS"; version="0.8-12"; sha256="049glqhc8h8gf425kmj92jv70917dsigpm37diby0c6hb4jrg8ka"; depends=[gtools]; }; -RESS = derive { name="RESS"; version="1.0"; sha256="0p6zfvakq4c02qp26l8zqcmi95na408rv6j6ibaxbcyf5vq9rhcs"; depends=[]; }; +RESS = derive { name="RESS"; version="1.1"; sha256="1g4g15m29cb6c60ah86si6ibi8sb2j7spqml6lmcflk4rrnyi4pc"; depends=[]; }; REST = derive { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; REdaS = derive { name="REdaS"; version="0.9.2"; sha256="0w1b2996b0sdpxklkxylnk18dx8vgssn5avh7pnrvdqa464ci4f8"; depends=[]; }; RFGLS = derive { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive { name="RFLPtools"; version="1.6"; sha256="1hl2crg7jl266zac41xvx151h7kl52346wnlvd8hba64s4s4apay"; depends=[RColorBrewer]; }; RFOC = derive { name="RFOC"; version="3.3-3"; sha256="101d7nf4zjni5kdk54w3afdaqnjzl7y90zygybkqpd0vi82q602b"; depends=[RPMG GEOmap RSEIS MASS splancs]; }; +RFgroove = derive { name="RFgroove"; version="1.0"; sha256="13cf2grp87j7mm0lqf8f65d1pzypjp3b7g09f35x6dfirvc7lkdy"; depends=[randomForest wmtsa fda]; }; RFinanceYJ = derive { name="RFinanceYJ"; version="0.3.1"; sha256="0qhmzsch7c2p0zckjkspsajzh8m10cf75ixjlgd0nj8rm41fngm3"; depends=[XML xts]; }; RFmarkerDetector = derive { name="RFmarkerDetector"; version="1.0"; sha256="0p8dnqwhsjh1gwxvqpicdbsjs9gczqi5j4av786l9g18f5djsv6m"; depends=[AUCRF randomForest ggplot2 UsingR WilcoxCV ROCR]; }; RForcecom = derive { name="RForcecom"; version="0.7"; sha256="0rjav2rwanzqgi1yasbm9lj18f0mfxwd8w8x41skf656gfcpi0i4"; depends=[XML RCurl plyr]; }; @@ -1572,7 +1600,7 @@ RISmed = derive { name="RISmed"; version="2.1.5"; sha256="03c2b6iqq147kwrpx6wh44 RImageJROI = derive { name="RImageJROI"; version="0.1.1"; sha256="0a4sa60klbpl31qxxvjjbksdhvs3vwm9na1v7014v93fzxy6bjas"; depends=[spatstat]; }; RImpala = derive { name="RImpala"; version="0.1.6"; sha256="03f4cq4bcrydpy78ypir7smj7abrcfynz0zzlgwgc60vh7vl79lz"; depends=[rJava]; }; RInSp = derive { name="RInSp"; version="1.2"; sha256="0zg46qw44wx17ydcz592gl4k9qq08dycmsshxxqkjf92r3g3l6wm"; depends=[]; }; -RInside = derive { name="RInside"; version="0.2.12"; sha256="09dx9md5i4vdgadmqfzcchs5nhkml4nwr8ckgmmqll0y3xph2f3h"; depends=[Rcpp Rcpp]; }; +RInside = derive { name="RInside"; version="0.2.13"; sha256="0cfhljdai9kkw5m01mjaya0s02g4g1cy1g4i0qpjkhgqyihsh7dy"; depends=[Rcpp Rcpp]; }; RItools = derive { name="RItools"; version="0.1-12"; sha256="0zdwj5y355d8jnwmjic3djwn6zy7h1iyl58j9hmnmc3m369cir0s"; depends=[lattice SparseM xtable svd abind]; }; RJDBC = derive { name="RJDBC"; version="0.2-5"; sha256="0cdqil9g4w5mfpwq85pdq4vpd662nmw4hr7qkq6510gk4l375ab2"; depends=[DBI rJava]; }; RJSDMX = derive { name="RJSDMX"; version="1.3"; sha256="1z4l6iw404qn3syk2877msywkr8369nic5zzvnx1qj0gj9x2mm2p"; depends=[rJava zoo]; }; @@ -1592,14 +1620,14 @@ RMOAjars = derive { name="RMOAjars"; version="1.0"; sha256="0k3w37dwyyvfxh7a9l76 RMRAINGEN = derive { name="RMRAINGEN"; version="1.0"; sha256="175kd803a44yblq2jw5mrn2qv4piiy249577lf684bmmajf4ird4"; depends=[copula RGENERATE RMAWGEN blockmatrix Matrix]; }; RMTstat = derive { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; RMallow = derive { name="RMallow"; version="1.0"; sha256="0prd5fc98mlxnwjhscmghw62jhq9rj5jk8qf4fnaa2a718yxf9b5"; depends=[combinat]; }; -RMark = derive { name="RMark"; version="2.1.12"; sha256="0b8yzng9c74yxl1a1nkc4knf2a9114mjkis19b1pdnclyxcnx45z"; depends=[snowfall matrixcalc msm coda]; }; +RMark = derive { name="RMark"; version="2.1.13"; sha256="04wrl4i3d6kwy4masqc17qab24jv8p3kbfcx2z5l11wyf84xaqgx"; depends=[snowfall matrixcalc msm coda]; }; RMediation = derive { name="RMediation"; version="1.1.3"; sha256="07ck74dl1wwb88229fhkh2czlynddff7zvjyhisxk53qmdb0wvmw"; depends=[MASS lavaan e1071]; }; RMongo = derive { name="RMongo"; version="0.0.25"; sha256="1anybw64bcipwsjc880ywzj0mxkgcj6q0aszdad6zd4zlbm444pc"; depends=[rJava]; }; RMySQL = derive { name="RMySQL"; version="0.10.3"; sha256="0791pshzr7rjjcnlm9md7gfsqkzizhzr9vwgnk2acc7sw5hikga6"; depends=[DBI]; }; RNCBIEUtilsLibs = derive { name="RNCBIEUtilsLibs"; version="0.9"; sha256="1h1ywx8wxy6n2rbpmjbqw4c0djz29pbncisd0mlbshj1fw226jba"; depends=[rJava]; }; RNCEP = derive { name="RNCEP"; version="1.0.7"; sha256="0yvddsdpdrsg2dafmba081q4a34q15d7g2z5zr4qnzqb8wjwh6q2"; depends=[maps RColorBrewer abind fields fossil tgp sp]; }; RND = derive { name="RND"; version="1.1"; sha256="1rbnjkfrsvm68xp90l4awixbvpid9nxnhg6i6fndpdmqwly2fwdp"; depends=[]; }; -RNeXML = derive { name="RNeXML"; version="2.0.2"; sha256="1giqwpcvr3v7na0z25qwps3qlrnffji0frcx694ifdfa89fn0s4d"; depends=[ape XML plyr taxize reshape2 httr uuid]; }; +RNeXML = derive { name="RNeXML"; version="2.0.3"; sha256="02aaacd2vs2iccjabx1bcrimhzr1kpzhkx9l50amwilj8q8ackr0"; depends=[ape XML plyr taxize reshape2 httr uuid]; }; RNetCDF = derive { name="RNetCDF"; version="1.7-3"; sha256="1blpwkmdi7scm876mvk9m23k4kfx83rc6hcy342236rbmxdzahhg"; depends=[]; }; RNetLogo = derive { name="RNetLogo"; version="1.0-1"; sha256="051yx7l8qbnvb4gn67m00wnl6v0jrmavmp7n7zygjn7p1xi3w22c"; depends=[rJava igraph]; }; RNiftyReg = derive { name="RNiftyReg"; version="1.1.3"; sha256="1z980rwlq7wg4zjslppzs9d2cxhj7l63sgg8x8g6zgs5ag3pzgi7"; depends=[reportr oro_nifti]; }; @@ -1639,14 +1667,15 @@ RRTCS = derive { name="RRTCS"; version="0.0.1"; sha256="05ws5n2ajisdh4gfzmilvkz6 RRreg = derive { name="RRreg"; version="0.3.0"; sha256="0pip05wk76h436mvcsddhn2p25ihms3yf1lb23k7ygpx6jx4mdn3"; depends=[doParallel foreach]; }; RSA = derive { name="RSA"; version="0.9.8"; sha256="1pqblhimhj79ss8js0nf8w24ga2kdmgw64rh496iib36g27asn8n"; depends=[lavaan ggplot2 lattice tkrplot plyr RColorBrewer aplpack]; }; RSADBE = derive { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; -RSAGA = derive { name="RSAGA"; version="0.93-6"; sha256="0wqiww0rx5fz4rbsb1x6pr2q0wz5dacj5fc0asj70igxwmh5x0p8"; depends=[gstat shapefiles plyr]; }; +RSAGA = derive { name="RSAGA"; version="0.94-1"; sha256="0zr3rm3s5pf2l2gkvbsr60srj6s1xx7kn26krpbzz3xqgbfgmz6k"; depends=[gstat shapefiles plyr]; }; RSAP = derive { name="RSAP"; version="0.9"; sha256="1sxirfabhpmfm0yiiazc9h1db70hqwva2is1dql6sjfanpl8qanl"; depends=[yaml reshape]; }; RSDA = derive { name="RSDA"; version="1.2"; sha256="06sa3x0abm2gnf4i4y3d5mlqj1wl7mzzal27sa1x65awzi6rs2kz"; depends=[sqldf XML scales FactoMineR ggplot2 glmnet abind scatterplot3d]; }; RSEIS = derive { name="RSEIS"; version="3.4-5"; sha256="0wh7977vm721hb566lh721mwn6b4x0p7x6xb7gv0nvrd3kpsw9zn"; depends=[RPMG Rwave]; }; -RSGHB = derive { name="RSGHB"; version="1.0.2"; sha256="0ffdx9lscbgknfqhvjdh3rwnlhiqxbpqa55jkn111a1vfv726v3d"; depends=[]; }; +RSGHB = derive { name="RSGHB"; version="1.1.0"; sha256="08ir7460mg0f414j69s7ffj35drip9qbbzwva1ps6x0gjjdnmzcq"; depends=[]; }; RSKC = derive { name="RSKC"; version="2.4.1"; sha256="1dvzxf001a9dg71l4bh8z3aia7mymqy800268qf7qzy9n6552g59"; depends=[flexclust]; }; RSNNS = derive { name="RSNNS"; version="0.4-6"; sha256="1p4gv2v9vzbgaksiibg66l9l9nabnm5lblc17md2cdcb6rygh3hp"; depends=[Rcpp Rcpp]; }; RSNPset = derive { name="RSNPset"; version="0.4"; sha256="1asrl75jlkdp829phjfza10fcl9akiqspbxncd8zf2a23f2r54sy"; depends=[fastmatch foreach doRNG Rcpp Rcpp RcppEigen]; }; +RSPS = derive { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[lattice plyr gridExtra]; }; RSQLServer = derive { name="RSQLServer"; version="0.1.1"; sha256="0xaw8a06xgc78hjg4bndip0jpc7l4glk28pggm2l3j31ybx81kw7"; depends=[DBI rJava RJDBC]; }; RSQLite = derive { name="RSQLite"; version="1.0.0"; sha256="08b1syv8z887gxiw8i09dpqh0zisfb6ihq6qqr01zipvkahzq34f"; depends=[DBI]; }; RSVGTipsDevice = derive { name="RSVGTipsDevice"; version="1.0-4"; sha256="1ybk5q4dhskrh7h1sy86ilchdwi6rivy3vv3lph6pms2virgm854"; depends=[]; }; @@ -1673,7 +1702,7 @@ RVAideMemoire = derive { name="RVAideMemoire"; version="0.9-45-2"; sha256="1c2hm RVFam = derive { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme survival lme4 kinship2 MASS Matrix]; }; RVideoPoker = derive { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap tkrplot rpanel]; }; RVowpalWabbit = derive { name="RVowpalWabbit"; version="0.0.6"; sha256="06f2lmls92qkbscss00c99xkzpx83mgjah6ds0sixv1b2qi216ap"; depends=[Rcpp Rcpp]; }; -RVsharing = derive { name="RVsharing"; version="1.1.0"; sha256="0gcas4rb8pms470dhbm2c2x87an0j594xsziglgd84nqn4gq095d"; depends=[kinship2]; }; +RVsharing = derive { name="RVsharing"; version="1.3.4"; sha256="0v267m7gfvc6fvfh4i53jk2xcr21kih6ddlgvb600j5ck6mi14vf"; depends=[kinship2]; }; RVtests = derive { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet spls pls]; }; RWBP = derive { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[RANN igraph lsa SnowballC]; }; RWeather = derive { name="RWeather"; version="0.4"; sha256="1vm8w07gsxwxvg1gpdzn6mpnh8g9kp0ln9fxjw5rl2f1zz80bxpy"; depends=[XML]; }; @@ -1692,17 +1721,19 @@ Rambo = derive { name="Rambo"; version="1.1"; sha256="1yc04xsfkc54y19g5iwambgnlc Ramd = derive { name="Ramd"; version="0.2"; sha256="0a64rp4dwhfr6vxsmya16x7wy7rxj4n98sdhhyy0ll850rdzlxd8"; depends=[]; }; RandVar = derive { name="RandVar"; version="0.9.2"; sha256="04hw4v2d9aa8z9f8wvwbzhbfy8zjl5q8mpl9b91q86fhh1yq5cz4"; depends=[distr distrEx]; }; RandomFields = derive { name="RandomFields"; version="3.0.62"; sha256="1v2dmwl3nq3mw88439z6hjaf3gkz9sf7dqm9iipgk333qw1s6sfk"; depends=[sp]; }; -RandomFieldsUtils = derive { name="RandomFieldsUtils"; version="0.0.2"; sha256="12vja6ilihy2xq78h6nj1i60vgd5b6pqr2knpw7yq1nix22v4qn9"; depends=[]; }; +RandomFieldsUtils = derive { name="RandomFieldsUtils"; version="0.0.7"; sha256="1rdhc81gd0y5ss1ap74y1n8g2d7z4gjryviw86z53aznn3ddnbhg"; depends=[]; }; RankAggreg = derive { name="RankAggreg"; version="0.5"; sha256="1c5ckk2pfkdxs3l24wgai2xg817wv218fzp7w1r3rcshxf0dcz2i"; depends=[gtools]; }; RankResponse = derive { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; Rankcluster = derive { name="Rankcluster"; version="0.92.9"; sha256="172jjsyc6a5y32s2fb8z6lgcq6rcwjbk3xnc5vvkhj64amlyxla6"; depends=[Rcpp Rcpp RcppEigen]; }; RapidPolygonLookup = derive { name="RapidPolygonLookup"; version="0.1"; sha256="0m6r11ksryzcfcm265wr9fhwb867j9ppfhalvvygzig5j85sg92k"; depends=[sp RANN PBSmapping RgoogleMaps]; }; Rarity = derive { name="Rarity"; version="1.3-4"; sha256="0zz1axr8a1r6js0la2ncls0l6jnjvx807ay2ngzb52hqbijifghx"; depends=[]; }; RaschSampler = derive { name="RaschSampler"; version="0.8-7"; sha256="11vkb5gvr1r2a7fpxyygkixc62ms53dpik9jdg7vrb9k43v82ggj"; depends=[]; }; -RbioRXN = derive { name="RbioRXN"; version="1.5"; sha256="1w4g8a72a7f5m7g43hcybkahn3p51m6jnkydwgrchp53pby8ljxy"; depends=[plyr RCurl gdata data_table stringr]; }; +RbioRXN = derive { name="RbioRXN"; version="1.5.1"; sha256="0lc43wm986y3xbdh1xihn7w583cql9kvj6rb018pn06ghz153i0d"; depends=[plyr RCurl gdata data_table stringr]; }; Rbitcoin = derive { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table RCurl digest RJSONIO]; }; Rborist = derive { name="Rborist"; version="0.1-0"; sha256="1irb9scl68m7skqdwny9kvnzg7f1r0q1c0whzqyhhj9l4lw16hmr"; depends=[Rcpp Rcpp RcppArmadillo]; }; Rcapture = derive { name="Rcapture"; version="1.4-2"; sha256="1nsxy5vpfv7fj03i6l5pgzjm0cldwqxxycnvqkfkshbryjcyl0ps"; depends=[]; }; +Rcell = derive { name="Rcell"; version="1.3-2"; sha256="1gfbwarbnv70sawaxv71har1m099icc2347wdvrz3hwmfgw6qm8n"; depends=[proto plyr reshape ggplot2 digest]; }; +RcellData = derive { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; }; Rcgmin = derive { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; Rchoice = derive { name="Rchoice"; version="0.3"; sha256="1ac2nw03g66z2rgxzv8jqad74cp4c9ry0hvnw77d57ddaxszkrva"; depends=[Formula maxLik msm plm plotrix]; }; Rclusterpp = derive { name="Rclusterpp"; version="0.2.3"; sha256="02s5gmmmd0l98wd1y884pjl3h289dyd9p9s7dh7yl2zaslqs2094"; depends=[Rcpp RcppEigen Rcpp RcppEigen]; }; @@ -1712,7 +1743,7 @@ RcmdrPlugin_BCA = derive { name="RcmdrPlugin.BCA"; version="0.9-8"; sha256="0xki RcmdrPlugin_DoE = derive { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base FrF2 DoE_wrapper relimp Rcmdr RcmdrMisc]; }; RcmdrPlugin_EACSPIR = derive { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[R2HTML abind ez nortest reshape Rcmdr RcmdrMisc]; }; RcmdrPlugin_EBM = derive { name="RcmdrPlugin.EBM"; version="1.0-8"; sha256="0lkj869xdacvnma0qq20fqdsq59jqka2fv5h78f99lybzcb95i11"; depends=[Rcmdr epiR abind]; }; -RcmdrPlugin_EZR = derive { name="RcmdrPlugin.EZR"; version="1.27"; sha256="00yk41f8d7z602xb3hpkk0zr2r17d9ap6sx78ni8wl7rkvmn0c7r"; depends=[Rcmdr]; }; +RcmdrPlugin_EZR = derive { name="RcmdrPlugin.EZR"; version="1.28"; sha256="0by00cnfs0yciy1azqvmcbkbf6r8mr2451xjqqxfd4jwmhg3nrxl"; depends=[Rcmdr]; }; RcmdrPlugin_EcoVirtual = derive { name="RcmdrPlugin.EcoVirtual"; version="0.1"; sha256="00yk09c1d1frwpfq12zvhg4gnc3p63r61abnil623jpr6wh4b2x8"; depends=[Rcmdr EcoVirtual]; }; RcmdrPlugin_FactoMineR = derive { name="RcmdrPlugin.FactoMineR"; version="1.5-0"; sha256="1hfnn12l3jljqpczpxz4m9ywbmw5rc1c8dpfl4cabrxnh6ymnk1a"; depends=[FactoMineR Rcmdr]; }; RcmdrPlugin_HH = derive { name="RcmdrPlugin.HH"; version="1.1-42"; sha256="0ra5glv2p4ii2c1b3dyxbdjl4ps6idjpl6ni8ridrfb391qlmyrk"; depends=[HH lattice latticeExtra rgl mgcv Rcmdr]; }; @@ -1728,7 +1759,7 @@ RcmdrPlugin_SLC = derive { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzm RcmdrPlugin_SM = derive { name="RcmdrPlugin.SM"; version="0.3.1"; sha256="10sjh2x02kb6yaxbvd9ihc6777j4iv6wi6k42gyl3k7i2c39fyn3"; depends=[Rcmdr car RColorBrewer colorspace vcd]; }; RcmdrPlugin_StatisticalURV = derive { name="RcmdrPlugin.StatisticalURV"; version="1.0-1"; sha256="04pqqgy12rnhwm8l0752hb9p5h4l11mm7flm6n9kkcvbkvagsbrz"; depends=[agricolae multcomp car Rcmdr]; }; RcmdrPlugin_TeachingDemos = derive { name="RcmdrPlugin.TeachingDemos"; version="1.0-7"; sha256="0d473p0df99x9a3jfwb49gxsrcvslcw9yandramwq82cwy3sdcxw"; depends=[rgl TeachingDemos Rcmdr]; }; -RcmdrPlugin_UCA = derive { name="RcmdrPlugin.UCA"; version="1.0-2"; sha256="11a8jaz5vycq8hnpxzrbv1g8vyh0ic1y48952ah633b2j1m1ay8i"; depends=[Rcmdr]; }; +RcmdrPlugin_UCA = derive { name="RcmdrPlugin.UCA"; version="2.0-4"; sha256="066h5idmmjng4i1n84rbvqgjnj7f1xrj32l1icm1dw3gsh2ipa5l"; depends=[Rcmdr randtests tseries]; }; RcmdrPlugin_coin = derive { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[Rcmdr coin survival multcomp]; }; RcmdrPlugin_depthTools = derive { name="RcmdrPlugin.depthTools"; version="1.3"; sha256="09mjn5jn4rdj1lh515vr3xlnk615flg13kcwbpk0an2si4xkgm9h"; depends=[Rcmdr depthTools]; }; RcmdrPlugin_doex = derive { name="RcmdrPlugin.doex"; version="0.2.0"; sha256="0l3c8vwifyl8a7qkfaqxm7cws2cg1g501qa93w5svcgp03yf98mj"; depends=[Rcmdr multcomp]; }; @@ -1751,7 +1782,7 @@ Rcpp = derive { name="Rcpp"; version="0.11.6"; sha256="153gwzg2inxmzs5qrr87r3zab Rcpp11 = derive { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; RcppAPT = derive { name="RcppAPT"; version="0.0.1"; sha256="0fyya80bd3w22qbsbznj9y21dwlj30a16d8a8kww4x8bpvmyil5z"; depends=[Rcpp Rcpp]; }; RcppAnnoy = derive { name="RcppAnnoy"; version="0.0.6"; sha256="1n4wrllhxn95lgkralvw5jjgff93nay5wdlyihih7f195fq5wqms"; depends=[Rcpp Rcpp]; }; -RcppArmadillo = derive { name="RcppArmadillo"; version="0.5.100.1.0"; sha256="0126g932fq24ns4yzj3z2dwagdy9qb7ckprk30zs7alq6rayfmn5"; depends=[Rcpp Rcpp]; }; +RcppArmadillo = derive { name="RcppArmadillo"; version="0.5.200.1.0"; sha256="0vz0yl5k0q57xrnjpz1bxs6j3hpysp1mkcxf5fs6xdy6nzaqsr7x"; depends=[Rcpp Rcpp]; }; RcppBDT = derive { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[Rcpp Rcpp BH]; }; RcppCNPy = derive { name="RcppCNPy"; version="0.2.4"; sha256="1cawaxghbliy7hgvqz3y69asl43bl9mxf46nwpbxc0vx3cq15fnk"; depends=[Rcpp Rcpp]; }; RcppClassic = derive { name="RcppClassic"; version="0.9.6"; sha256="1xhjama6f1iy7nagnx1y1pkqffrq8iyplllcar24vxr0zirgi1xi"; depends=[Rcpp Rcpp]; }; @@ -1760,10 +1791,11 @@ RcppDE = derive { name="RcppDE"; version="0.1.2"; sha256="0ji5csfygqvrcahgx5gxy7 RcppDL = derive { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp Rcpp]; }; RcppEigen = derive { name="RcppEigen"; version="0.3.2.4.0"; sha256="1p6lfylj0mh059pxbp198r8nci8f89h0gb11x2pi0jgg7cqbxgh6"; depends=[Matrix Rcpp Rcpp]; }; RcppExamples = derive { name="RcppExamples"; version="0.1.6"; sha256="1jnqh9nii5nncsah0lrkls8dqqcka9fnbvfg8ikl4cqjri17rpbv"; depends=[Rcpp Rcpp]; }; +RcppFaddeeva = derive { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[Rcpp knitr Rcpp]; }; RcppGSL = derive { name="RcppGSL"; version="0.2.4"; sha256="1nw1984siwxvihp68g7khr2c4a4nwyb4ll04r5302kksz4nh7mpi"; depends=[Rcpp Rcpp]; }; RcppMLPACK = derive { name="RcppMLPACK"; version="1.0.10-2"; sha256="1hdvdk6ni2iganmldarklv635yzgzja36zcpflh5w45c5y3ysqvj"; depends=[Rcpp Rcpp RcppArmadillo BH]; }; RcppOctave = derive { name="RcppOctave"; version="0.14.5"; sha256="0dplc2x9fq2jfzfbcxdd45pmiimapqb3xhyjkzd4k6q8xmqjw95p"; depends=[Rcpp pkgmaker digest stringr Rcpp]; }; -RcppParallel = derive { name="RcppParallel"; version="4.3.8"; sha256="0gk42v2qxjgz34ispcyr0mizbp3l9l0p6jpw3y59vafpbkgdk0yg"; depends=[]; }; +RcppParallel = derive { name="RcppParallel"; version="4.3.14"; sha256="04kch598fqxkclv7ys8s9mqsd9wbzjqk1yjc66drzyycjc8jl9qi"; depends=[]; }; RcppProgress = derive { name="RcppProgress"; version="0.2.1"; sha256="1dah99679hs6pcaazxyc52xpx5wawk95r2bpx9fx0i33fqs1s4ng"; depends=[Rcpp Rcpp]; }; RcppRedis = derive { name="RcppRedis"; version="0.1.3"; sha256="0xpldiny2n121dp7vpj9l3bjvjhbfkdim5cassvvj2wms9q4jvh5"; depends=[Rcpp RApiSerialize Rcpp RApiSerialize]; }; RcppRoll = derive { name="RcppRoll"; version="0.2.2"; sha256="19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"; depends=[Rcpp Rcpp]; }; @@ -1781,10 +1813,10 @@ Rdsm = derive { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla ReCiPa = derive { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; ReacTran = derive { name="ReacTran"; version="1.4.2"; sha256="1yc0k3wgg4yb6cqmjkyl25sfkbfcfxi5ria106w5jyx7dr5lfvdi"; depends=[rootSolve deSolve shape]; }; RealVAMS = derive { name="RealVAMS"; version="0.3-1"; sha256="04d4sc3lhlklx1y016rmh3x27m8caxlp53qn2ks5wz52w26pfdhn"; depends=[Matrix numDeriv Rcpp Rcpp RcppArmadillo]; }; -RecordLinkage = derive { name="RecordLinkage"; version="0.4-7"; sha256="18v9jihp00xfz80vkg054v93w6grnp3aaf7prlzckwxs5i5lff70"; depends=[DBI RSQLite ff ffbase e1071 rpart ada ipred evd data_table nnet xtable RSQLite]; }; +RecordLinkage = derive { name="RecordLinkage"; version="0.4-8"; sha256="0wjjrgmz7m11hhsw7dcg3745255xckdgrqp3xlqkyh2kzbyr9rp4"; depends=[DBI RSQLite ff ffbase e1071 rpart ada ipred evd data_table nnet xtable RSQLite]; }; Records = derive { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; RefFreeEWAS = derive { name="RefFreeEWAS"; version="1.3"; sha256="1cb1q2nki0d18ia4cmi1sp7qih9hv7g1jk1kyp7vya5gp572z3cd"; depends=[isva]; }; -RefManageR = derive { name="RefManageR"; version="0.8.45"; sha256="16smvd25gdssiry2i8gs24km83hnsq2v6m225i7qadcmn9pyj4yh"; depends=[XML RCurl RJSONIO plyr bibtex lubridate stringr]; }; +RefManageR = derive { name="RefManageR"; version="0.8.63"; sha256="17gmdyaqg8swfhpa1n8h1rj7aamrgdcprf56vx643ivhih8kgdj4"; depends=[XML RCurl RJSONIO plyr bibtex lubridate stringr]; }; RegClust = derive { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; RegressionFactory = derive { name="RegressionFactory"; version="0.7.1"; sha256="1zx885x49ncp2cl1v8hxzc3r2njka9cjsadjykbvqp9pdbm4ga5l"; depends=[]; }; RelValAnalysis = derive { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; }; @@ -1799,13 +1831,14 @@ ReporteRs = derive { name="ReporteRs"; version="0.7.8"; sha256="1gzsdrkmz2g59m26 ReporteRsjars = derive { name="ReporteRsjars"; version="0.0.2"; sha256="1abvgzxipg0cgiy26z14i99qydzqva6j2v7pnrxapysg7ml5cnjc"; depends=[rJava]; }; ResistorArray = derive { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; }; ResourceSelection = derive { name="ResourceSelection"; version="0.2-4"; sha256="01r1w03paazyix5jjxww89falba1qfiqcznx79a6fmsiv8gm2x5w"; depends=[]; }; +RevEcoR = derive { name="RevEcoR"; version="0.99.2"; sha256="100sman51vvwg5xkypmksyyjqdb6g858z29vn7x4kvly8ncw4hfd"; depends=[Matrix igraph XML stringr magrittr gtools plyr]; }; Rfacebook = derive { name="Rfacebook"; version="0.5"; sha256="0cl4s815i4yxp805j8nhqmva31imbd1xp3yxgi53qwjhagh4i57a"; depends=[httr rjson httpuv]; }; Rfit = derive { name="Rfit"; version="0.21"; sha256="129z5ivwfxbh3rfwk98jnm6ibq5z9z3r9mhy9gv61jfr4ig78dcn"; depends=[quantreg]; }; Rglpk = derive { name="Rglpk"; version="0.6-0"; sha256="0g0s63skabr0yqk5s9p66p77z8v3pr3hbnirbgdddlvkpphi08xx"; depends=[slam]; }; RgoogleMaps = derive { name="RgoogleMaps"; version="1.2.0.7"; sha256="04k7h8hgxvgsccdiysbblplwjvn8m7g8h3anzdlxmmjaamd8l9lw"; depends=[png RJSONIO]; }; Rhh = derive { name="Rhh"; version="1.0.2"; sha256="0blxim8yrb0qnbkc1z2q24q6ryakggq2zhaa223swla99ahmsny3"; depends=[]; }; -Rhpc = derive { name="Rhpc"; version="0.14-261"; sha256="09rb68dys283gqmgn00v5skz6y5mcychg7hjrmi59pcfl5i7sk71"; depends=[]; }; -RhpcBLASctl = derive { name="RhpcBLASctl"; version="0.14-256"; sha256="1s9mwwh269wwdqnb98jxsmpjm2bdf5dj4c3wkj5i81w2p1sm8qx3"; depends=[]; }; +Rhpc = derive { name="Rhpc"; version="0.15-147"; sha256="1cb60vsvv6vj0sa1p9p05d16xi446qqckjzbiz0lmiy7k43nyccm"; depends=[]; }; +RhpcBLASctl = derive { name="RhpcBLASctl"; version="0.15-148"; sha256="1carylfz9gafradbdyg7fz2bypr7n72fbm8vhyiinmp0k4s5ipvc"; depends=[]; }; RidgeFusion = derive { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; Ritc = derive { name="Ritc"; version="1.0.1"; sha256="1h41s4jihzj0yj8xyan0zhhyyiq8m5567vw4gvmmr81p1qfzvva8"; depends=[minpack_lm]; }; @@ -1832,6 +1865,7 @@ RobPer = derive { name="RobPer"; version="1.2.1"; sha256="1impcp2yfxxh439a70s2gq RobRSVD = derive { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; }; RobRex = derive { name="RobRex"; version="0.9"; sha256="0ii539mjq462n1lbnyv3whl8b1agvhvlz31wwyz911gb40isl639"; depends=[ROptRegTS]; }; RobustAFT = derive { name="RobustAFT"; version="1.3"; sha256="0cxyvq75bwhjh3qzfj6ynmy8mby6yjy4r851sx80b8ls6rv4cf3z"; depends=[robustbase survival]; }; +RobustEM = derive { name="RobustEM"; version="1.0"; sha256="1li9r3bk7zhpxljgqvr2zila8nb05nasvlzqlswwgi9443i740zi"; depends=[mvtnorm e1071 ggplot2 ellipse doParallel foreach]; }; RobustRankAggreg = derive { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; RockFab = derive { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[rgl]; }; Rook = derive { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; @@ -1841,10 +1875,11 @@ RoughSetKnowledgeReduction = derive { name="RoughSetKnowledgeReduction"; version RoughSets = derive { name="RoughSets"; version="1.2-1"; sha256="06bykfd26qdll0xadvvp0lljcibg613xi02gq5q8x3h0l9qa4c2x"; depends=[Rcpp Rcpp]; }; Rpdb = derive { name="Rpdb"; version="2.2"; sha256="0gf6qab05a3ky8skbbjiadizi1gs4pcw3zp25qj5gn82lb6382pd"; depends=[rgl]; }; Rphylip = derive { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; +Rphylopars = derive { name="Rphylopars"; version="0.1.1"; sha256="04qd6zzgjgrfnv3ffv3jzlcl4ilfb67fxza49qq4rzinxc2s392b"; depends=[ape Rcpp doBy geiger phylolm phytools mvnmle Rcpp RcppArmadillo]; }; Rpoppler = derive { name="Rpoppler"; version="0.0-1"; sha256="01zsbm538yhwm1cyz5j6x2ngz05yqj16yxyvyxqhn6jp8d0885jh"; depends=[]; }; Rquake = derive { name="Rquake"; version="2.3-1"; sha256="0xb8j76jjv6k3r8nzjxdddic4rq1yj7qsh85asl38qwj7483cyc4"; depends=[RPMG RSEIS GEOmap MBA minpack_lm rgl cda]; }; Rramas = derive { name="Rramas"; version="0.1-4"; sha256="191rm2ylvf3ffc9i4wpjvfbsinmw7s1m0wcq24j4qs4fxg8qqzyq"; depends=[diagram]; }; -Rrdrand = derive { name="Rrdrand"; version="0.1-10"; sha256="1j72v44scmghm29jxjdy0651qlkhsnrb3bb5qff82451mbd17bzb"; depends=[]; }; +Rrdrand = derive { name="Rrdrand"; version="0.1-14"; sha256="18ry07pi9iwskbxcimvp91fgpvrlaf44z0hp7k90dnyaa8qpbwjx"; depends=[]; }; Rsampletrees = derive { name="Rsampletrees"; version="0.1"; sha256="02wh99nxlhyrivr655825nqcl3w0mvppnmvc9yrkdbkjw0l1zsjd"; depends=[haplo_stats ape]; }; Rserve = derive { name="Rserve"; version="1.7-3"; sha256="09rha4p86vak7ss721mwp5bm5ig09xam8zlqv63n9wf36v3kdmpn"; depends=[]; }; RsimMosaic = derive { name="RsimMosaic"; version="1.0.2"; sha256="0d5z5dffi2prz0r31x08c8gw83448bhkma5mzcmrdlg6kx5y7dp8"; depends=[jpeg fields RANN]; }; @@ -1852,9 +1887,10 @@ Rsolnp = derive { name="Rsolnp"; version="1.15"; sha256="10w9gd1l62r638sh00fbgcp Rsomoclu = derive { name="Rsomoclu"; version="1.4.1"; sha256="0yr0nsm2b7wg1x57db9zclqnqqbmhyax9vgw13ynqirq2ysxxsg6"; depends=[Rcpp]; }; Rssa = derive { name="Rssa"; version="0.13"; sha256="1prcivlwxky4h33ybky7n3wpn4vj1wm898ifsrhs1j9ywla1m2zf"; depends=[svd forecast lattice]; }; Rsundials = derive { name="Rsundials"; version="1.6"; sha256="0vrvxsznbclgls4jljc59lyli6cw9k1a3wapfrs6xbkqi8865iif"; depends=[]; }; -Rsymphony = derive { name="Rsymphony"; version="0.1-19"; sha256="0m9xbyp4hxz9rbc8nd7q0fwzgl6126iv0sxwifamxkc9z8vr86js"; depends=[]; }; -Rtsne = derive { name="Rtsne"; version="0.9"; sha256="1b3ilfirlhmbv1914rwnj9mamn6clzi86csp3szfwg93gk23yymn"; depends=[Rcpp Rcpp]; }; +Rsymphony = derive { name="Rsymphony"; version="0.1-20"; sha256="10l3z9b51c8xsdfnscwn6g868xn84pfw3dlyj3vrsw3vs7qbi0gl"; depends=[]; }; +Rtsne = derive { name="Rtsne"; version="0.10"; sha256="14270gg0fp3imq9rafqj56ld56kzby7yyf5rg9z0wlimm7s72hy5"; depends=[Rcpp Rcpp]; }; Rttf2pt1 = derive { name="Rttf2pt1"; version="1.3.3"; sha256="16bnhrg86rzi4g4zf235m1g8amyhcwxpw0wgcxynfiinm2fl4y1n"; depends=[]; }; +Rtts = derive { name="Rtts"; version="0.3.1"; sha256="1zgrkj4y7267d1n8iw1q3pgf2lmmklkslf5211kl7v788zxqr9c5"; depends=[RCurl]; }; Ruchardet = derive { name="Ruchardet"; version="0.0-3"; sha256="0dgldi6fgp949c3455m9b4q6crqv530jph210xzph41vgw8a2q2v"; depends=[Rcpp Rcpp]; }; Runiversal = derive { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; Runuran = derive { name="Runuran"; version="0.21.0"; sha256="1p33z9h2zj6fx42rlq6yajd6lwvzy4a1a5gs67dz5k1zbza8avw0"; depends=[]; }; @@ -1867,7 +1903,7 @@ RxCEcolInf = derive { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjb RxnSim = derive { name="RxnSim"; version="1.0.1"; sha256="17agz3kw7pj4mpl25y1n8l9lqfj63wn70rqpdkcpnx7j6s6933vx"; depends=[rJava fingerprint data_table rcdk]; }; Ryacas = derive { name="Ryacas"; version="0.2-12.1"; sha256="18dpnr6kj0a8f2jcbj9f6ahd0mg7bm1qm8dcs1wh8kmjl3klr1y8"; depends=[XML]; }; Rz = derive { name="Rz"; version="0.9-1"; sha256="1cpsmfxijrfx06ydpjzbaak7gkad4jjk1ph9453l9zly1cwzgspj"; depends=[foreign memisc psych ggplot2 RGtk2 formatR]; }; -SAENET = derive { name="SAENET"; version="1.0"; sha256="0mnzv1a3xmbf4w9mgsi2kf20kyhcsadaih63wb0zvraqv5ijdd31"; depends=[autoencoder neuralnet]; }; +SAENET = derive { name="SAENET"; version="1.1"; sha256="13mfmmjqbkdr6j48smdlqvb83dkb34kx3i16gx0gmmafk3avdaxx"; depends=[autoencoder neuralnet]; }; SAFD = derive { name="SAFD"; version="0.4"; sha256="1zbja8bgva2j24ks4m14hbf4s0n674lj89nfxkkmwrljzsmjrjhv"; depends=[]; }; SAM = derive { name="SAM"; version="1.0.5"; sha256="1fki43bp6kan6ls2rd6vrp1mcwvz92wzcr7x6sjirbmr03smcypr"; depends=[]; }; SAMUR = derive { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; @@ -1876,7 +1912,6 @@ SAPP = derive { name="SAPP"; version="1.0.4"; sha256="0a86vz390v2g5lz1r33qrmhgva SASPECT = derive { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; SAScii = derive { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; SASmixed = derive { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; -SASxport = derive { name="SASxport"; version="1.5.0"; sha256="0sgxpjv9ilz2zb13kkb0fqjfbamrczxpy9rwvfhh46bmx4i038iq"; depends=[chron Hmisc]; }; SAVE = derive { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; }; SBRect = derive { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSA = derive { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp Rcpp RcppArmadillo]; }; @@ -1940,6 +1975,7 @@ SOD = derive { name="SOD"; version="1.0"; sha256="0f0rh1qsjzxb3zzr440kvl6fnnj7dv SODC = derive { name="SODC"; version="1.0"; sha256="18s4rcp5dzchvwrzzbfhbs3x91zlg1rymjarxjk5i429mfrn0krx"; depends=[magic ppls psych MASS]; }; SOLOMON = derive { name="SOLOMON"; version="1.0-1"; sha256="0z91wsrgdir25ks4dnirzsg4f1ngal7n40235m3w43j6y6dhkqrc"; depends=[]; }; SOMbrero = derive { name="SOMbrero"; version="1.0"; sha256="10d2fakjkfk3p4dfh0cw1sp7i95f7lqdvz8b7x7sc5pg82dpffy7"; depends=[knitr igraph wordcloud scatterplot3d RColorBrewer shiny]; }; +SOPIE = derive { name="SOPIE"; version="1.4"; sha256="0kmzw0plr5bhc65g7aggf8g1i38aw9v2fw7x4vgdgb7zi5qmn5mx"; depends=[circular]; }; SOR = derive { name="SOR"; version="0.22"; sha256="1njwlsvdnwxidvwrx18h6h4dhrsdgy0fikkhn20pip42qqwd96gz"; depends=[Matrix]; }; SOUP = derive { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; SPA3G = derive { name="SPA3G"; version="1.0"; sha256="15f38imwqn1zifym2821q7xysvws9vhlif4g16w0pnvk0wlhyb92"; depends=[]; }; @@ -1997,7 +2033,7 @@ SelvarMix = derive { name="SelvarMix"; version="1.0"; sha256="0yysmf854xz5l0lf2x SemiCompRisks = derive { name="SemiCompRisks"; version="2.0"; sha256="0in3pv66nhb0ar4xfxskvf24c7bqkr9ik069a4nynwnc3idpsq32"; depends=[]; }; SemiMarkov = derive { name="SemiMarkov"; version="1.4.1"; sha256="048hmbcmhqkvqw8nbzm0136mc9w7b27jy8q9r3rvc3banh854d1m"; depends=[numDeriv MASS Rsolnp]; }; SemiPar = derive { name="SemiPar"; version="1.0-4.1"; sha256="05gnk4s0d6276rmnyyv6gy1wpkji3sw563n8l7hmi9qqa19ij22w"; depends=[MASS cluster nlme]; }; -SemiParBIVProbit = derive { name="SemiParBIVProbit"; version="3.3"; sha256="12zjpyl79kx750xgra06zbw5vnaq8mis39cm8672w3d9giy2fxr5"; depends=[mgcv mvtnorm magic VineCopula VGAM survey trust Matrix sn]; }; +SemiParBIVProbit = derive { name="SemiParBIVProbit"; version="3.4"; sha256="038k5vvgrk20n2cbji8qrp9nkg0ck5dcbxnd7wc5hy1l780g4k5g"; depends=[mgcv magic VGAM survey trust VineCopula]; }; SemiParSampleSel = derive { name="SemiParSampleSel"; version="1.2"; sha256="1k9xmby8hy4k0qn7pjj0rypxj4iqb206ixv92bz7ga0q8zd0nxbr"; depends=[copula mgcv mvtnorm gamlss_dist magic trust VGAM Matrix]; }; SenSrivastava = derive { name="SenSrivastava"; version="2012-04-0"; sha256="0ki0kl18cj8lkad6q48piyvslkirs8y5rnfa8bvgjxsisxg2ahhp"; depends=[]; }; SensitivityCaseControl = derive { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; }; @@ -2005,8 +2041,9 @@ SensoMineR = derive { name="SensoMineR"; version="1.20"; sha256="1qw97cixndg2h29 SensusR = derive { name="SensusR"; version="1.0"; sha256="1b5yrb3iiijr7x0r4ga5dlx6yqqk4bvmh1377655s6c7j36sn1xd"; depends=[jsonlite lubridate rworldmap plyr sp]; }; SeqFeatR = derive { name="SeqFeatR"; version="0.1.7"; sha256="195pkpk9sh99v01mk827axsynwaccygx19i1x0h0ma7bsqlmw1qc"; depends=[tcltk2 plotrix ape plyr phangorn calibrate ggplot2]; }; SeqGrapheR = derive { name="SeqGrapheR"; version="0.4.8.3"; sha256="03plwa3sc1pg34p1szbz3d0z8y53w7iqm7qn9q6fj72rsnk5spxc"; depends=[igraph rggobi gWidgets gWidgetsRGtk2 cairoDevice]; }; -Sequential = derive { name="Sequential"; version="1.1"; sha256="1fr4n6qbxwj6hs01h07wdj5v4c7af5q8ccnm33yzcrx845qf8fiv"; depends=[]; }; +Sequential = derive { name="Sequential"; version="2.0"; sha256="0dndy4a1waxgwj43gq1zb6cqwvrafcr729hhr7qckw5crcmm0iph"; depends=[]; }; SetMethods = derive { name="SetMethods"; version="1.0"; sha256="0zizvrzyk01w4ncazvifmjm4h5zrpsf6n68n11sc8f5kzny9ia48"; depends=[lattice betareg lattice betareg]; }; +ShapeSelectForest = derive { name="ShapeSelectForest"; version="1.0"; sha256="0jy40aql33xwl4s7y2s3wb6yig4vr6ly6fhz7hn2d59b8428p04q"; depends=[coneproj raster rgdal]; }; SharpeR = derive { name="SharpeR"; version="0.1501"; sha256="138faypgrfph48wvz600l20ypqzxdir4q43bl9s7vndysya3vsnl"; depends=[matrixcalc]; }; ShrinkCovMat = derive { name="ShrinkCovMat"; version="1.1.0"; sha256="1v2rr97wz5521cjy41j5vdqq29xd7696pc1rzw4angsfjrq3fnh4"; depends=[]; }; SiZer = derive { name="SiZer"; version="0.1-4"; sha256="0kiwvxrfa2b49r2iab5v2aysc2yzk5ck3h41f2hr0vq5pdnz0qy5"; depends=[boot]; }; @@ -2043,14 +2080,14 @@ SoundexBR = derive { name="SoundexBR"; version="1.1"; sha256="1rhmwbf7687lgwwx1q SparseGrid = derive { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; SparseM = derive { name="SparseM"; version="1.6"; sha256="1296snm3481259xwhj97vffwjb2v8367ivf2g5amd4pzqzwx6p1k"; depends=[]; }; SparseTSCGM = derive { name="SparseTSCGM"; version="2.1.1"; sha256="0xr3l049kssi7k074wggvc96p2zlca076j2hwpwpmna42xl3dmqv"; depends=[glasso longitudinal flare MASS mvtnorm network abind]; }; -SpatPCA = derive { name="SpatPCA"; version="1.0.0.1"; sha256="1j2zhm0xlm5w1p4yhg60qwa0r2hai7nv1n25ski5x2nfnpb5fiij"; depends=[fields Rcpp Rcpp RcppArmadillo]; }; +SpatPCA = derive { name="SpatPCA"; version="1.0.0.2"; sha256="0f8byi4zhrjj8fdka93r22kbjjqgkx3p06a65sppgvq65v8lff0l"; depends=[fields Rcpp Rcpp RcppArmadillo]; }; SpatialEpi = derive { name="SpatialEpi"; version="1.2.1"; sha256="02mvahpbrlcnxmf272fk46wykv9s2lcjqd5yhd80dfs78qjwly77"; depends=[sp Rcpp MASS maptools spdep Rcpp RcppArmadillo]; }; -SpatialExtremes = derive { name="SpatialExtremes"; version="2.0-0"; sha256="0fjh4cjzljwzxk4bhcrff9wnkskaiawbj7z6swrj1xl35mq4dljx"; depends=[]; }; +SpatialExtremes = derive { name="SpatialExtremes"; version="2.0-2"; sha256="0ywybk9gziy2hzb1ks88q4rzs3lzzy6y3fzhja2s39ngg195hi6l"; depends=[maps fields]; }; SpatialNP = derive { name="SpatialNP"; version="1.1-1"; sha256="108gxk0gbbjck9bgxvqb9h216ww21lmh2by0hrhzwx5r63hhcbmd"; depends=[]; }; SpatialPack = derive { name="SpatialPack"; version="0.2-3"; sha256="1gs0x3wj3hj663m6kszwhy3ibcx0lrslr127miy1rhz8683ij71c"; depends=[]; }; SpatialPosition = derive { name="SpatialPosition"; version="0.9"; sha256="0w09yrn32pis4w3hkbghkgwpyy7mnnzzkhhp289xl738lymv207a"; depends=[raster sp]; }; SpatialTools = derive { name="SpatialTools"; version="0.5.8"; sha256="18zchr8bfjqdr9j6vh6365mhrj2n0ns1ixvmas5s0ppiim59jl7j"; depends=[spBayes Rcpp Rcpp RcppArmadillo]; }; -SpatialVx = derive { name="SpatialVx"; version="0.2-2"; sha256="16qww58az1523pk8b4b5hzqnpb8djgvph2ykf6bjp8zz5qdfyhjs"; depends=[spatstat fields smoothie smatr turboEM distillery maps boot CircStats fastcluster waveslim]; }; +SpatialVx = derive { name="SpatialVx"; version="0.2-4"; sha256="0nm3mripq1fiqn7ydl854azwpl1sdh2ls8gj1k432xsvi02m05y3"; depends=[spatstat fields smoothie smatr turboEM distillery maps boot CircStats fastcluster waveslim]; }; SpatioTemporal = derive { name="SpatioTemporal"; version="1.1.7"; sha256="0rc5zf8cnjw59azgqmslfz2dl5i17dfmb7ls5c849qybp2gn2zdv"; depends=[Matrix MASS]; }; SpecHelpers = derive { name="SpecHelpers"; version="0.1.6"; sha256="1h14a1rsk7x5qafn4hcpmannkdf2wdphkzaa3b6nbb9jqjs1szi0"; depends=[gsubfn]; }; SpeciesMix = derive { name="SpeciesMix"; version="0.3.1"; sha256="0wl15k00d7n9pmnp1kr28p05z4vrziprcdndw77kwkcgv51cvllk"; depends=[MASS numDeriv]; }; @@ -2060,6 +2097,7 @@ SphericalCubature = derive { name="SphericalCubature"; version="1.0.1"; sha256=" SphericalK = derive { name="SphericalK"; version="1.1"; sha256="18h1k0gy65jvzfpsda0ifv3nn3pvzx5ifllxbwh0my6w75c4biqn"; depends=[]; }; SportsAnalytics = derive { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; StAMPP = derive { name="StAMPP"; version="1.3"; sha256="1igf6arp7glihkv60zc7c0zwfqaf5kcm2d1xr856fj194zxww9ad"; depends=[pegas doParallel foreach adegenet]; }; +StMoMo = derive { name="StMoMo"; version="0.2.0"; sha256="1pddlwf3kns9fzmqddfak6bir0mc1i4bv9cswj5pbhpavsd08r1c"; depends=[gnm forecast MASS rootSolve fanplot reshape2 fields]; }; StMoSim = derive { name="StMoSim"; version="3.0"; sha256="18mdgpn0x6338zzvc7nwccz6ypqmlpv7pzcy5fwx5y2wfkmdp4rm"; depends=[RcppParallel Rcpp RcppParallel Rcpp]; }; StableEstim = derive { name="StableEstim"; version="2.0"; sha256="080khfix88j4656hmdy9l0xpbk9zzw7z7d7f6yvwsbalk3ag18i5"; depends=[Matrix stabledist testthat numDeriv xtable fBasics MASS]; }; Stack = derive { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[plyr stringr ff ffbase bit]; }; @@ -2082,11 +2120,12 @@ StreamMetabolism = derive { name="StreamMetabolism"; version="1.1.1"; sha256="1r StressStrength = derive { name="StressStrength"; version="1.0.1"; sha256="15sgdisgz8zcq4i9z4zm7isr5ckyd7bk6yl1g7a5kngams282ipx"; depends=[]; }; SubCultCon = derive { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; SubLasso = derive { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet psych gplots]; }; +SubpathwayGMir = derive { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[XML igraph]; }; Sunder = derive { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; }; SunterSampling = derive { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; }; SuperLearner = derive { name="SuperLearner"; version="2.0-15"; sha256="1sk45419awk8aahylmqbardx8lglx0d7hrwc0k2prnksk5r3549l"; depends=[nnls]; }; SuppDists = derive { name="SuppDists"; version="1.1-9.1"; sha256="1jqsv1lzjblc7sdb4gh8pkww9ar174bpbjl7mmdi59fixymwz87s"; depends=[]; }; -Surrogate = derive { name="Surrogate"; version="0.1-5"; sha256="0g66yzbirkxs6f69zbfaw61ki25qgdxwkd3zhmymmgxhbix77n11"; depends=[MASS nlme msm lme4 rgl lattice latticeExtra]; }; +Surrogate = derive { name="Surrogate"; version="0.1-61"; sha256="0jifjns0v22risy783a0s71v6sn165wn7w6a47sb7dsdimrvnn9d"; depends=[MASS nlme msm lme4 rgl lattice latticeExtra]; }; SurvCorr = derive { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[survival fields]; }; SurvLong = derive { name="SurvLong"; version="1.0"; sha256="000ywg0sdk9kailiy7ckhq4mkaawl9hh88w6apj5khgpxsyj8aw3"; depends=[]; }; SurvRegCensCov = derive { name="SurvRegCensCov"; version="1.3"; sha256="1sl17x984ww07aakz6dambn5kznw4hvj4b8ahy2r4mr6wf2dpg5a"; depends=[survival numDeriv]; }; @@ -2098,12 +2137,13 @@ SyNet = derive { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfm SynchWave = derive { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; SynergizeR = derive { name="SynergizeR"; version="0.2"; sha256="0z32ylrjjvp8kr6lghhg57yq1laf9r0h8l3adysvis8bbpz2q2sj"; depends=[RJSONIO RCurl]; }; Synth = derive { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; -TAM = derive { name="TAM"; version="1.6-0"; sha256="0wca6ry29k422q8x4qwpd9myc6xnd2p2z05dqlmb2gwzgbj3wcbk"; depends=[CDM MASS Rcpp mirt lavaan WrightMap tensor sfsmisc GPArotation psych mvtnorm msm lattice plyr Rcpp RcppArmadillo]; }; +TAM = derive { name="TAM"; version="1.7-1"; sha256="1zsgdilxh7j7ay74a5id7iwm0mz3vf1rcgw7fvclic1ndwwj68z3"; depends=[CDM MASS Rcpp mirt lavaan WrightMap tensor sfsmisc GPArotation psych mvtnorm msm lattice plyr Rcpp RcppArmadillo]; }; TANOVA = derive { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; }; TAQMNGR = derive { name="TAQMNGR"; version="2015.2-1"; sha256="0j7qb15xy4g4ff0cmyjyz4lsalaxxf6zdwbq49j3y80ld0pvwhbk"; depends=[Rcpp]; }; TBEST = derive { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[signal fdrtool]; }; TBSSurvival = derive { name="TBSSurvival"; version="1.2"; sha256="12ipgffympqjjg8l9gbich5pgz0pqr5g07b0il26rr721xiyxk5v"; depends=[normalp survival mcmc R_utils coda Rsolnp BMS]; }; TDA = derive { name="TDA"; version="1.3"; sha256="1f9f5v8c0ynxz8p4kr9w08c4icf0840h7iay8k1ydh5zmr43d7lk"; depends=[FNN igraph scales]; }; +TDAmapper = derive { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; TDCor = derive { name="TDCor"; version="0.1-1"; sha256="001rmwi2v4vy1b2d7wwvvca4xnkizz8dmys3q3xbjv7wrfxyvai8"; depends=[deSolve]; }; TDD = derive { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[signal RSEIS pracma]; }; TDMR = derive { name="TDMR"; version="1.3"; sha256="0bbd2an18ayxaxprsjqrybb877lkk74dpxbvbv7qdwc1ivqm8g96"; depends=[SPOT twiddler testit adabag]; }; @@ -2121,6 +2161,7 @@ TH_data = derive { name="TH.data"; version="1.0-6"; sha256="1kx6z8lj1l2vxi7vhx47 TIMP = derive { name="TIMP"; version="1.12.1"; sha256="06zjpa9j4sr62f2lspa75i7n8xcf4xdgxq2zjbzsx4f0p0nf5ymj"; depends=[fields vcd gplots colorspace gclus nnls deSolve minpack_lm MASS]; }; TInPosition = derive { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[prettyGraphs TExPosition ExPosition InPosition]; }; TKF = derive { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[expm numDeriv ape phytools phangorn]; }; +TOC = derive { name="TOC"; version="0.0-2"; sha256="0zkwbjyi5dc6y0fzmwkbyrf32h0r5vhxxz67zjrhqc06vyasai8w"; depends=[raster bit rgdal]; }; TPmsm = derive { name="TPmsm"; version="1.2.0"; sha256="1670b9g6sqlg5xk76x77cph1wzp44yp957sn8px5k7kkb1hgi0pl"; depends=[KernSmooth]; }; TR8 = derive { name="TR8"; version="0.9.13"; sha256="07wrqwa5gf1l1y3b07mganr5xkzxdzrh6lrv7gf01m9b7bsz564m"; depends=[RCurl XML taxize plyr rappdirs gWidgets gWidgetstcltk gdata]; }; TRAMPR = derive { name="TRAMPR"; version="1.0-7"; sha256="135ylhijhpdxpznfdbdzwfsvy8bhw1yx28c3520a3lyrqvinpawg"; depends=[]; }; @@ -2131,14 +2172,14 @@ TSA = derive { name="TSA"; version="1.01"; sha256="0cm97hwxm6vfgy9mc3kgwq6dnmn86 TSEN = derive { name="TSEN"; version="1.0"; sha256="1pn313g2ylbjc37rqcakd797vffnh7v0rgg1xl5wjyvcgmm5mxix"; depends=[ncdf]; }; TSHRC = derive { name="TSHRC"; version="0.1-3"; sha256="18ygg7bqwg1pdqi52l1lf33gcd277895rlf5853yzh7ln2ivssmi"; depends=[]; }; TSMySQL = derive { name="TSMySQL"; version="2015.4-1"; sha256="1gdda7li320ba9qfxfl5c4cwl2ln5jdbvid98cryj175g0nbmx7b"; depends=[TSdbi DBI tframe TSsql RMySQL]; }; -TSP = derive { name="TSP"; version="1.1-0"; sha256="0d38n6z531jcg34q39fv0qsmccjbx5yil14fw5pmvyympyjsf5kq"; depends=[foreach]; }; +TSP = derive { name="TSP"; version="1.1-1"; sha256="0wwzmkgfy55dba9jl3mpbyqciia71px0x0s6708k8kz9vr03m2zs"; depends=[foreach]; }; TSPostgreSQL = derive { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[TSdbi DBI tframe tframePlus TSsql RPostgreSQL]; }; TSPred = derive { name="TSPred"; version="2.0"; sha256="0p4msk12n8jc1ss8p7m15rxd0ip7v83c5p78v26nk5dz21a4xprp"; depends=[forecast]; }; TSSQLite = derive { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[TSdbi DBI tframe tframePlus TSsql RSQLite]; }; TSTutorial = derive { name="TSTutorial"; version="1.2.3"; sha256="0hpk6k3lc72p8pdz5aad04lcjsz9k443h5gs09dc3i10wqw3yhxs"; depends=[MASS]; }; TSclust = derive { name="TSclust"; version="1.2.3"; sha256="0m04svw4z2rhvzyckn8l4pg4rmwfn8xlzd9k839c47ldbzgb4z6l"; depends=[wmtsa pdc cluster locpol KernSmooth dtw longitudinalData]; }; TScompare = derive { name="TScompare"; version="2015.4-1"; sha256="0jmxnrbsdg368f29bp70rc9i88si5zjblbcn8rcjyn2k9vpd3q2f"; depends=[TSdbi tframe tfplot DBI]; }; -TSdata = derive { name="TSdata"; version="2015.4-1"; sha256="0h8gxgfal4ak2jmxmql02qpq4lcgj8m263aq9h83l5gmvzd173q7"; depends=[]; }; +TSdata = derive { name="TSdata"; version="2015.4-2"; sha256="1c0ly1gs6p3fspwvk1f6c2xgzvc7p7pkzakm44lisbyjklacnilp"; depends=[]; }; TSdbi = derive { name="TSdbi"; version="2015.1-1"; sha256="1bqxpd4g0ppm1261srgwjzghfwwl53vybkihz99azckky0539m1s"; depends=[DBI tframe]; }; TSdist = derive { name="TSdist"; version="2.2"; sha256="1zqqy2pxjzxlj1d32d086qrkf9rlgj9vn9smzbcfix8wlgvxfi1l"; depends=[proxy zoo xts dtw TSclust KernSmooth locpol pdc longitudinalData cluster]; }; TSfame = derive { name="TSfame"; version="2015.4-1"; sha256="197v123mkxr7qlksnb5iadms5zbc8xqbpgr2cspb8x1krz6phssz"; depends=[TSdbi DBI tframe tframePlus fame tis]; }; @@ -2148,6 +2189,7 @@ TSsdmx = derive { name="TSsdmx"; version="2015.2-2"; sha256="1xwriyg0raqd6812r6v TSsql = derive { name="TSsql"; version="2015.1-2"; sha256="1hpi2cssnkzqgnaj91wrvb94fs8zpfg8hi4m1zwswzyl3az0l9sc"; depends=[DBI tframe TSdbi tframePlus zoo]; }; TTAinterfaceTrendAnalysis = derive { name="TTAinterfaceTrendAnalysis"; version="1.5.1"; sha256="1i9p5s7xj3py8465yjjaqs2m7krjxzzqd86lkpbgzxnxjdnxcx5i"; depends=[Hmisc pastecs reshape wq e1071 timeSeries fBasics relimp multcomp nlme lubridate tcltk2]; }; TTR = derive { name="TTR"; version="0.22-0"; sha256="0aackwmmakjcynpq4nxi8xw1x3688rkg6kypgd5jiprzzdhsz5rq"; depends=[xts xts]; }; +TTmoment = derive { name="TTmoment"; version="1.0"; sha256="0a4rdb4fk1mqnvvz0r15kni0g5vcj4xkkcwwv7c2gxc94xh5i5ih"; depends=[mvtnorm]; }; TUWmodel = derive { name="TUWmodel"; version="0.1-4"; sha256="1xxbrcs3dddzcya15pj4k86z05vnv06fnwblfvygx0zkw0m292av"; depends=[]; }; Table1Heatmap = derive { name="Table1Heatmap"; version="1.1"; sha256="1nrabjivfsdhaqmlq365pskkrp99jqsxn8vy03mdnqn5h5zv7wvx"; depends=[colorRamps]; }; TableMonster = derive { name="TableMonster"; version="1.2"; sha256="1cl70d0svzx8nsg6kw5dv50s9d6wxqkyg39d2d4vissbpilq6arn"; depends=[xtable]; }; @@ -2167,7 +2209,7 @@ Thinknum = derive { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95a ThreeArmedTrials = derive { name="ThreeArmedTrials"; version="0.1-0"; sha256="1pafm8k90yv0hrk5a9adfv37087l2in0psslhkxha6mkmdh6a5f6"; depends=[MASS]; }; ThreeWay = derive { name="ThreeWay"; version="1.1.2"; sha256="1vf71im3bs2b2v05j12l8qn181kah0mch4h13n71zqik1ykly6jf"; depends=[]; }; ThresholdROC = derive { name="ThresholdROC"; version="1.0"; sha256="1w7bjw1w09skxyc5w3d72wivljlvnck6vbchihjx7m5k6djn7pxi"; depends=[]; }; -TickExec = derive { name="TickExec"; version="1.0"; sha256="0ylmf0mxp9hnijnq9rq6l4xahzsyrh8pfjjbgzz6v77ycvzzz5sh"; depends=[]; }; +TickExec = derive { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; }; TiddlyWikiR = derive { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; }; Tides = derive { name="Tides"; version="1.1"; sha256="0w2xjnw2zv4s49kvzbnfvy30mfkn8hqdz6p155xm1kfqwvyb28qq"; depends=[]; }; TilePlot = derive { name="TilePlot"; version="1.3.1"; sha256="0yfzjyzc743rv5piw9mb7y0rr558hkxszgz49lya2w3i1mqvxbzy"; depends=[]; }; @@ -2213,16 +2255,16 @@ VGAM = derive { name="VGAM"; version="0.9-8"; sha256="0wizv2r1k79ifg9m0z9m2l80bs VGAMdata = derive { name="VGAMdata"; version="0.9-7"; sha256="0fkm90nbmj0gjzxmh54qbf90alcbaiz27rs0zc0i5jhh2cv716y6"; depends=[]; }; VHDClassification = derive { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIF = derive { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; }; -VIFCP = derive { name="VIFCP"; version="1.0"; sha256="19jpwhbw5ml46ic8mzkl0ll7qaa0slw608c790dpbch8hx1r5i7s"; depends=[]; }; +VIGoR = derive { name="VIGoR"; version="1.0"; sha256="1c24s917aafqy46b3xlsw8v3afs11nd5bq83vlygpgnz1612jpga"; depends=[]; }; VIM = derive { name="VIM"; version="4.1.0"; sha256="15nmywg8mhknvivg9bfszif2allim5vf1hjfbfyl053jphjpax26"; depends=[colorspace data_table car robustbase sp vcd MASS nnet e1071 Rcpp Rcpp]; }; VIMGUI = derive { name="VIMGUI"; version="0.9.0"; sha256="195lakyik597sjkq6c5v3881p35111gzmj2r5f5nr53vi6bn4pzm"; depends=[tkrplot VIM survey gWidgetsRGtk2 foreign RGtk2 Cairo Hmisc]; }; VLF = derive { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; }; VLMC = derive { name="VLMC"; version="1.4-1"; sha256="0y91cl9pv1d5s8956grdx3y4xa5l1fabrh1wl5hn11fjgyz1dcij"; depends=[MASS]; }; VNM = derive { name="VNM"; version="4.0"; sha256="0dc2wvj8f09yrsf5lhg6djhfnkgslngs6a13g54d5q9aa4nnxm8w"; depends=[]; }; VPdtw = derive { name="VPdtw"; version="2.1-10"; sha256="1sipiqbk766czd1jxam3bc2hfq7wsn72x51j5ssn2s2q0gvpl7m1"; depends=[]; }; -VSURF = derive { name="VSURF"; version="0.8.2"; sha256="1d9irh8s49i8i9q8psmfl41jnr95wvm3libxin0ir8r297rq82z3"; depends=[randomForest rpart doParallel]; }; +VSURF = derive { name="VSURF"; version="1.0.0"; sha256="1hqn22k66v9zb2qr7sig0zgki9hbfr5442d7mlldnyj3m012m22j"; depends=[doParallel foreach randomForest rpart]; }; VaRES = derive { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; -VarSelLCM = derive { name="VarSelLCM"; version="1.0"; sha256="1i0s4kdqgfh79bk5ipd9fn6m3yl1qgn9gzn62kxx7vfiy683x0a2"; depends=[Rcpp mclust Rcpp RcppArmadillo]; }; +VarSelLCM = derive { name="VarSelLCM"; version="1.2"; sha256="1pzcadzg1snv2nkdrbhgi6scrd70cawprncm8hs82gcl3r9dscic"; depends=[Rcpp Rcpp RcppArmadillo]; }; VarSwapPrice = derive { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; }; VariABEL = derive { name="VariABEL"; version="0.9-2"; sha256="0vlr6zxl75i49p35jxrc5fwfrb55n91hqdan2ikcix3r2k4qs5k0"; depends=[]; }; VarianceGamma = derive { name="VarianceGamma"; version="0.3-1"; sha256="0h424hdphbgi9i84bgzdwmsq05w61q8300x8f9y4szbxa5k2dnar"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; }; @@ -2232,7 +2274,7 @@ VecStatGraphs2D = derive { name="VecStatGraphs2D"; version="1.7"; sha256="08f9ix VecStatGraphs3D = derive { name="VecStatGraphs3D"; version="1.6"; sha256="1pnpgnxdiis4kzwhh17k61aidyan5fp9rzqhvwf6gljb4csqsk54"; depends=[rgl misc3d MASS]; }; VennDiagram = derive { name="VennDiagram"; version="1.6.9"; sha256="0sxgspqsn15y3pipd9wy4wh2n5rkb9bazqkfwkf88p483azpjxw9"; depends=[]; }; VideoComparison = derive { name="VideoComparison"; version="0.11"; sha256="04jc9br4ddck2sh9bhy02jx34cqxvh904lr46sid6dnmaqfn80l7"; depends=[RJSONIO RCurl zoo pracma Rcpp Rcpp]; }; -VineCopula = derive { name="VineCopula"; version="1.4"; sha256="03bjpnpq8zj1h4z35m2xkgrislvp7lmvpxm905xxn1r3r944kflz"; depends=[MASS mvtnorm igraph copula ADGofTest]; }; +VineCopula = derive { name="VineCopula"; version="1.5"; sha256="1ifb7y0y1b5kha9nv395mlf3h3cczlqkvk782a2z0xy5vf0frfhi"; depends=[MASS mvtnorm igraph copula ADGofTest lattice]; }; VizOR = derive { name="VizOR"; version="0.7-9"; sha256="1xw06y86nsrwpri6asrwh8kccjsqzzidgbpld6d6l7vrglp8m6sr"; depends=[lattice rms]; }; Voss = derive { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; VoxR = derive { name="VoxR"; version="0.5.1"; sha256="07lsp6lrkq0gv55m84dl9w7gz5246d9avypqnkz96n3rbbgd0w5z"; depends=[]; }; @@ -2255,19 +2297,21 @@ WaveletComp = derive { name="WaveletComp"; version="1.0"; sha256="16ghxqjbv39pmg WeightedCluster = derive { name="WeightedCluster"; version="1.2"; sha256="1d0df284fzfa34fi7b3d7f4zzm9ppyah46rj865446l5pjvl9np3"; depends=[TraMineR cluster RColorBrewer]; }; WeightedPortTest = derive { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; WhatIf = derive { name="WhatIf"; version="1.5-6"; sha256="02lqvirnf24jn8b2s08z5fjmpilp2z08lww1s793n3pn783adbky"; depends=[lpSolve]; }; -WhiteStripe = derive { name="WhiteStripe"; version="1.0"; sha256="0j8f10dwc14a0yfnjw73i6mrh0y9iyjbxmhklz2hlxv1k53pppbg"; depends=[oro_nifti mgcv fslr]; }; +WhiteStripe = derive { name="WhiteStripe"; version="1.1.1"; sha256="1naavgkvgky3lzg5vlz11g589cxr0fgiqz2waz86da1ksk4a19gw"; depends=[oro_nifti mgcv]; }; WhopGenome = derive { name="WhopGenome"; version="0.9.2"; sha256="0nhl3qanwvyxvkrdc0wngzdx6id0yfzbf9wp170mcsyd4qh7pxzs"; depends=[]; }; WideLM = derive { name="WideLM"; version="0.1-1"; sha256="0spxl960pgzh0cn1gkw2ayixpi982rr85qajcdqahmn9msk877h8"; depends=[Rcpp Rcpp]; }; -WikipediR = derive { name="WikipediR"; version="1.1.0"; sha256="19hc1vmyv0bnf00q8vwmfr6jxrcd1h5xzb9pphy5grghbj01bcl8"; depends=[httr jsonlite]; }; +WikidataR = derive { name="WikidataR"; version="1.0.0"; sha256="061745pz4j9gldbwy6pa5pbxmin84csqpv7r5r8lanvc0m7kgcgx"; depends=[httr jsonlite WikipediR]; }; +WikipediR = derive { name="WikipediR"; version="1.2.0"; sha256="1l9q9yg4z4j0lch9r8xr9q0f8mr0lpzf50ygmkkcvfd5sp7hirmi"; depends=[httr jsonlite]; }; WikipediaR = derive { name="WikipediaR"; version="1.0"; sha256="0kx966q5zn7jq1m7b8w1y1zllxvslr66bz6ji1lr11vk0fykl3kn"; depends=[XML]; }; WilcoxCV = derive { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; WordPools = derive { name="WordPools"; version="1.0-2"; sha256="1izs4cymf2xy1lax85rvsgsgi05ygf0ibi9gzxc96sbgvy4m78kf"; depends=[]; }; WrightMap = derive { name="WrightMap"; version="1.1"; sha256="0dmximp549gr37ps56vz8mnlii7753dc5v0wl3s78cymjmnmyr0z"; depends=[]; }; WriteXLS = derive { name="WriteXLS"; version="3.5.1"; sha256="0grhwwlibdpvzjlm1vc5ykl54jcz0jmg6rkhis00rjn5yqccx0in"; depends=[]; }; XBRL = derive { name="XBRL"; version="0.99.16"; sha256="1wrcm8srn185qrba7rig3fvwjz1n2ab296i0jr71vhyp9417h40q"; depends=[Rcpp Rcpp]; }; +XHWE = derive { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; XLConnect = derive { name="XLConnect"; version="0.2-11"; sha256="02wxnr6h06h125dqszs8mzq4av842g445ndr59xgscxr03fyvi8p"; depends=[XLConnectJars rJava]; }; XLConnectJars = derive { name="XLConnectJars"; version="0.2-9"; sha256="0js79297himq628cwx5cc3pcq3iv6p16bn4bpd5diyjaya4x27g3"; depends=[rJava]; }; -XML = derive { name="XML"; version="3.98-1.1"; sha256="0n9i6746211wihglbpsgalj2cyvggn4rv6a4fbavqwnjw3h1hwwl"; depends=[]; }; +XML = derive { name="XML"; version="3.98-1.2"; sha256="13rhl534l0cnklxf6zb9y8ykg0k5idg9dxy0nv1vbliz6rw3dr00"; depends=[]; }; XML2R = derive { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[XML RCurl plyr]; }; XNomial = derive { name="XNomial"; version="1.0.1"; sha256="134bwglqhgah7v3w6ir65dch2dwp5h4vldw521ba74l5v9b2j2h4"; depends=[]; }; XiMpLe = derive { name="XiMpLe"; version="0.03-21"; sha256="1j387jzxh0z9dmhvc0kpjjjzf781sgrw57nwzdqwx6bn09bw509d"; depends=[]; }; @@ -2287,25 +2331,27 @@ ZeligMultilevel = derive { name="ZeligMultilevel"; version="0.7-1"; sha256="00zl aCRM = derive { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[dummies randomForest kernelFactory ada]; }; aLFQ = derive { name="aLFQ"; version="1.3.2"; sha256="1963np2b2x7gbpgwcx0rqxd2psfdfmh72ap1y4p7f37ibjm8g45m"; depends=[data_table plyr caret seqinr lattice randomForest ROCR reshape2 protiq]; }; aRpsDCA = derive { name="aRpsDCA"; version="1.0.0"; sha256="035888scbl5333sz25f9n6xh1zis7l2752p4nhsbs2g44q38l9h6"; depends=[]; }; -aRxiv = derive { name="aRxiv"; version="0.5.8"; sha256="0kwphz9x4ljsznvxxvm03mmbrv3ipyy2fh8lgik4zvv4c63mlxsh"; depends=[httr XML]; }; +aRxiv = derive { name="aRxiv"; version="0.5.10"; sha256="1q8nblb0kfdidcj1nwxn0fap87wpkg49z0bgmwayskwv1p860wrh"; depends=[httr XML]; }; +aSPU = derive { name="aSPU"; version="1.35"; sha256="0wlp47wc75mmgh3986npqa72d4jia1jgalfvz7sq62wjsh1wkrbv"; depends=[]; }; abc = derive { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data nnet quantreg MASS locfit]; }; abc_data = derive { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abcdeFBA = derive { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[Rglpk rgl corrplot lattice]; }; -abctools = derive { name="abctools"; version="1.0"; sha256="0kaw2saghjyysj2bcsij2018ls3lrzh9188m0yqhmv71k5vh68rd"; depends=[abc abind plyr]; }; +abctools = derive { name="abctools"; version="1.0.2"; sha256="1wdm42g2maab700fq2shpr1kajpj9m4c4z6k49gghrdzpk1kqxsa"; depends=[abc abind plyr]; }; abd = derive { name="abd"; version="0.2-7"; sha256="0zkqwdcpz1v9k509vvzfbf9732v43q919hwd9yq3q0dg67d32ai7"; depends=[nlme lattice mosaic]; }; abf2 = derive { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; }; abind = derive { name="abind"; version="1.4-3"; sha256="1km61qygl4g3f91ar15r55b13gl8dra387vhmq0igf0sij3mbhmn"; depends=[]; }; abn = derive { name="abn"; version="0.85"; sha256="1ml4l4fiqscc1ikv0wsi73rymb9599mpnhmzlfnvv4zp3fkfm6qm"; depends=[Cairo]; }; abundant = derive { name="abundant"; version="1.0"; sha256="0n2yvq057vq5idi7mynnp15cbsijyyipgbl4p7rqfbbgpk5hy3qb"; depends=[QUIC]; }; -accelerometry = derive { name="accelerometry"; version="2.2.4"; sha256="0jk3dirk7bbddqh5j6nw2k1wm1i3k3xnz1mcb6lb5qyf1b642miw"; depends=[Rcpp Rcpp]; }; -accrual = derive { name="accrual"; version="1.0"; sha256="0gw418i9nlrm7nkg6d4m2icd4a04a7avqfjj7nidhl6vy4nflg3k"; depends=[fgui SMPracticals]; }; +acc = derive { name="acc"; version="1.0.2"; sha256="1z7hncgd43mc84v3wdcqpkp3gxsdyvh7h8s6qvgap2lp04m1j74l"; depends=[zoo PhysicalActivity mhsmm timeDate]; }; +accelerometry = derive { name="accelerometry"; version="2.2.5"; sha256="00mn09j7y39sc7h5srnnfk2l73vhh6zq7rzc0vckfvs72lncmwv5"; depends=[Rcpp Rcpp]; }; +accrual = derive { name="accrual"; version="1.1"; sha256="12zlv34pgmhcvisqk3x09hjpmfj91pn56pkjyj483mcf634m9ha4"; depends=[fgui SMPracticals]; }; accrued = derive { name="accrued"; version="1.2"; sha256="0xkar6kpxf7sq36xqf6cvns2sp5qgqxqjb8hindp59gvlcd2r5a7"; depends=[]; }; acepack = derive { name="acepack"; version="1.3-3.3"; sha256="13ry3vyys12iplb14jfhmkrl9g5fxg3iijiggq4s4zb5m5436b1y"; depends=[]; }; acid = derive { name="acid"; version="1.0"; sha256="0m59xnz6435n7j3fggv274g5rap7cpr0zby3aqbaycfdfrp78d1h"; depends=[gamlss gamlss_dist Hmisc]; }; acm4r = derive { name="acm4r"; version="1.0"; sha256="1wqzc35i1rshx0zlmas8y4qkkvy6h9r4i4apscjjv1xg2wjflzxa"; depends=[MASS]; }; acnr = derive { name="acnr"; version="0.2.4"; sha256="1nry927zqhb34h9lcixr344n3sxvq1142zwgj8hadlw69dv8m59y"; depends=[R_utils xtable]; }; acopula = derive { name="acopula"; version="0.9.2"; sha256="1z8bs4abbfsdxfpbczdrf1ma84bmh7akwx2ki9070zavrhbf00cf"; depends=[]; }; -acp = derive { name="acp"; version="1.1"; sha256="0bdyaab2zalqaq5m4zr86mj92wqq520wqbdb5bkvs7skq6xd1zq9"; depends=[tseries]; }; +acp = derive { name="acp"; version="2.0"; sha256="11ij2xhnkhy7lnzj8fld7habidb9av8a2bk22ycf62f556pqf533"; depends=[tseries quantmod]; }; acs = derive { name="acs"; version="1.2"; sha256="1vw4ghqcz53m3qy7hy2j7nrdinbbqjpwvr1hsvglq31fq7wss3bd"; depends=[stringr plyr XML]; }; acss = derive { name="acss"; version="0.2-5"; sha256="0cqa60544f58l5qd7h6xmsir40b9hqnq6pqgd5hfx2j2l5n7qhmk"; depends=[acss_data zoo]; }; acss_data = derive { name="acss.data"; version="1.0"; sha256="09kl4179ipr8bq19g89xcdi1xxs397zcx5cvgp6viy8gn687ilgv"; depends=[]; }; @@ -2320,7 +2366,7 @@ adaptTest = derive { name="adaptTest"; version="1.0"; sha256="08d7a5dlzhaj236jva adaptivetau = derive { name="adaptivetau"; version="2.2"; sha256="1xqvbbdmn70fmycpn0680q1l9s34kcmkjl812d7yrfxwm1bjfif5"; depends=[]; }; adaptsmoFMRI = derive { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[Matrix coda mvtnorm MCMCpack spatstat]; }; additivityTests = derive { name="additivityTests"; version="1.1-4"; sha256="048ds90wqjdjy1nyhna3m06asdklbh8sx1n556kss2j1r1pma1sw"; depends=[]; }; -addreg = derive { name="addreg"; version="1.2"; sha256="1xgf9q0z3prvchyba1vaai6ij72nzvj2dqyr6y2wzb96jfqv19kl"; depends=[combinat glm2]; }; +addreg = derive { name="addreg"; version="2.0"; sha256="1lc8p70di466i061jrbahq4hir4g5a8rns6044jjjg8v7b1y8alc"; depends=[combinat glm2]; }; ade4 = derive { name="ade4"; version="1.7-2"; sha256="01pchn70jpz8v9l86ng34a2vgn3pv4v5iwxz5n39f685p9lkc2nn"; depends=[]; }; ade4TkGUI = derive { name="ade4TkGUI"; version="0.2-6"; sha256="010ggsxcmljh0cdba4lcfnsd9r49pwqs6kbw88syfn2qv65hh5kq"; depends=[ade4]; }; adegenet = derive { name="adegenet"; version="1.4-2"; sha256="13fglxy40rnwi5hsmmvwlfcvfn8dybxyy3k5qhpml8jgpbl3fsdb"; depends=[ade4 MASS igraph ape shiny ggplot2]; }; @@ -2358,7 +2404,7 @@ alleHap = derive { name="alleHap"; version="0.7.2"; sha256="1x10grrv732a0iidr2c9 allelematch = derive { name="allelematch"; version="2.5"; sha256="1kws6y3igq6l85cfjrck2dzcfpgr56ridbc6w071h8kjw19mlzas"; depends=[dynamicTreeCut]; }; allelic = derive { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; }; alm = derive { name="alm"; version="0.4.0"; sha256="125cl5b1sps33ipsh2pygrw79mhin1qj374lq56ny7c9rp4n9w7p"; depends=[ggplot2 plyr stringr reshape reshape2 httr jsonlite lubridate]; }; -alphaOutlier = derive { name="alphaOutlier"; version="1.0.0"; sha256="1f4jma487sp5csrvp5z7rx7k78kj8d4rkw7i3ql764rmm0pbk1h8"; depends=[Rsolnp nleqslv quantreg]; }; +alphaOutlier = derive { name="alphaOutlier"; version="1.0.1"; sha256="1zl80q08vcyvyakfv6cd444m6l5z14p7bv9jf8kpg4dad3d63mhz"; depends=[Rsolnp nleqslv quantreg]; }; alphahull = derive { name="alphahull"; version="2.0"; sha256="1z8kbh3y5clh3hn018g0fci2psd0l36nz4a08pgg7md2bbhripbl"; depends=[ggplot2 tripack sgeostat spatstat splancs]; }; alphashape3d = derive { name="alphashape3d"; version="1.1"; sha256="1hfxvzqgirc587vxyggxdqii90nvypzi3wddvd2zdw2h95v9kfyg"; depends=[geometry rgl]; }; alr3 = derive { name="alr3"; version="2.0.5"; sha256="0zrrsv2kjq3cky3bhk6gp32p1qpr1i5k2lx7c1w08bql0nb1x740"; depends=[car]; }; @@ -2368,7 +2414,7 @@ amei = derive { name="amei"; version="1.0-7"; sha256="0dyx6a1y5i0abwka0y89d0mpj5 amen = derive { name="amen"; version="1.0"; sha256="17kaknfgi39qcg5mhkdyf6cn2l3nn9n2xzvyz1c4piy6inhmj36c"; depends=[]; }; aml = derive { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; anacor = derive { name="anacor"; version="1.0-5"; sha256="1m2r5x5spb5nahd9cvnsxwqi0ay2kasmha21rbwj3r99jz1vxkql"; depends=[rgl car scatterplot3d colorspace fda]; }; -analogue = derive { name="analogue"; version="0.16-0"; sha256="1izbqzmnw4hmirjlvwp15imzaai2kxbv2gzc58y5awwbfdrg314m"; depends=[vegan mgcv MASS brglm princurve lattice]; }; +analogue = derive { name="analogue"; version="0.16-3"; sha256="0lv8ljf10jdrgrd59pcjdi1wvjfd0j6qb87xzfx5k8kcp9awx4h6"; depends=[vegan mgcv MASS brglm princurve lattice]; }; analogueExtra = derive { name="analogueExtra"; version="0.1-0"; sha256="0hyl0vn2i594r5czzha7y9a1n4dpznfpmh2j46mci2r57p2s3qr2"; depends=[vegan3d analogue rgl]; }; analyz = derive { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; anametrix = derive { name="anametrix"; version="1.6"; sha256="14xrrnvz7jn1jqds48l5pvzlx6hsaxrjc932lqnvv70sfypinjkm"; depends=[RCurl XML pastecs]; }; @@ -2389,7 +2435,7 @@ aoristic = derive { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43 apTreeshape = derive { name="apTreeshape"; version="1.4-5"; sha256="0mvnjchhfbpbnrgnplb6qxa7r2kkvw29gqiprwggkf553wi6zl48"; depends=[ape quantreg]; }; apc = derive { name="apc"; version="1.1"; sha256="0gnjniy7gm5fh4wn7vwml3z5bw6ydd1xxq5npvqljbzy4vhh8k5a"; depends=[]; }; apcluster = derive { name="apcluster"; version="1.4.1"; sha256="1s7wsgimpln5kiy1ai8clq2r0i6vh8mr5v4xjha9phdbm8l8yfbg"; depends=[Rcpp Matrix Rcpp]; }; -ape = derive { name="ape"; version="3.2"; sha256="015ibyri6r2xdmy644pb1p6xn0rzxaz49sr96859jfvafzi7p2ny"; depends=[nlme lattice]; }; +ape = derive { name="ape"; version="3.3"; sha256="1zdgszyi5kwfj3kccx35q8z57p53zdp819hjqdw5z8y6q7b49j1c"; depends=[nlme lattice]; }; apex = derive { name="apex"; version="1.0.0"; sha256="1y4y1kji5nvbk0igbv9xjwsjrnz7bsjj23cczydywg9nppsi9df0"; depends=[ape phangorn adegenet]; }; aplore3 = derive { name="aplore3"; version="0.7"; sha256="1xj3k13wjpsydcrai474b94kyj298islzfpfwn8n51k67h8r4l08"; depends=[]; }; aplpack = derive { name="aplpack"; version="1.3.0"; sha256="0i6jy6aygkqk5gagngdw9h9l579lf0qkiy5v8scq5c015w000aaq"; depends=[]; }; @@ -2407,19 +2453,20 @@ aqp = derive { name="aqp"; version="1.8-6"; sha256="03gwvb5sm9l4vyl0jh9rzjs3ka2q aqr = derive { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[xts RCurl]; }; archdata = derive { name="archdata"; version="0.1"; sha256="1k7cpqwgvkwfz25a9db0c8g6ii6xsbhkj3c9alghhaafs7x8n47w"; depends=[]; }; archetypes = derive { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; }; -archiDART = derive { name="archiDART"; version="1.0"; sha256="0fahcw3032rvz1qd2vv872k8d7845zjfm2byrk1nk5b34z25wm2b"; depends=[]; }; +archiDART = derive { name="archiDART"; version="1.1"; sha256="1md8y3nq575y9v4gj963y92as54h6bzaysnmjirk634rravps9ja"; depends=[XML]; }; archivist = derive { name="archivist"; version="1.3"; sha256="1did4s9afmbd4b2xcs674fyk2vz0r08vchjfar1q3ri2mfq4p7x5"; depends=[RSQLite DBI shiny lubridate RCurl digest httr]; }; arf3DS4 = derive { name="arf3DS4"; version="2.5-10"; sha256="12cbrk57c9m7fj1x7nfmcj1vp28wj0wymsjdz8ylxhm3jblbgmxc"; depends=[corpcor]; }; arfima = derive { name="arfima"; version="1.2-7"; sha256="00mc50hssnv7qj6dn1l3jgx8ca4vjkqirc38rv538xwjgw9mm1ms"; depends=[ltsa]; }; argosfilter = derive { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; argparse = derive { name="argparse"; version="1.0.1"; sha256="03p8dpwc26xz01lfbnmckcx6wzky43dyq71085b0anzsavgx0786"; depends=[proto findpython getopt rjson]; }; argparser = derive { name="argparser"; version="0.1"; sha256="0x4wm8hjzb779pp39v8q210npg7kzh9m8wwqmd17aaqaa3l2al9f"; depends=[]; }; -arm = derive { name="arm"; version="1.8-4"; sha256="17kg5z8spndn41gak9hx7a8dfdx6yrqbsd30lajkgc23x3sd6j1r"; depends=[MASS Matrix lme4 abind coda nlme]; }; +arm = derive { name="arm"; version="1.8-5"; sha256="0mjsjqrim2a6ds8gxrbdyp96b6sz1vjsqic80a5izrc2z9bml5p5"; depends=[MASS Matrix lme4 abind coda nlme]; }; arnie = derive { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; -aroma_affymetrix = derive { name="aroma.affymetrix"; version="2.13.0"; sha256="0rb4qijsqzrv47i30fpcngw50a1gk10zn1r13lszxcsm5i8vjqf7"; depends=[R_utils aroma_core R_methodsS3 R_oo R_cache R_devices R_filesets aroma_apd MASS matrixStats]; }; +aroma_affymetrix = derive { name="aroma.affymetrix"; version="2.13.2"; sha256="0km1mhy8p6pksa0wnwx0cxbfgipi6c7xn7913agsqdpfbfphhm8j"; depends=[R_utils aroma_core R_methodsS3 R_oo R_cache R_devices R_filesets aroma_apd MASS matrixStats]; }; aroma_apd = derive { name="aroma.apd"; version="0.6.0"; sha256="1l9p5qww71h6wlg2z15wirsfz2i7hmf637l17zaf3n7fp9s3flc7"; depends=[R_methodsS3 R_oo R_utils R_huge]; }; aroma_cn = derive { name="aroma.cn"; version="1.6.0"; sha256="090qqvv6sk0508knmh2qr1lvpc2vr8s17mj6siblzc66ldp22dj7"; depends=[R_utils aroma_core R_methodsS3 R_oo R_filesets R_cache matrixStats PSCBS]; }; -aroma_core = derive { name="aroma.core"; version="2.13.0"; sha256="1r3r0hrw8akdpjmzhnc0fg6nyd9hccvv4kfbms38qll70lac4910"; depends=[R_utils R_filesets R_devices R_methodsS3 R_oo R_cache R_rsp matrixStats RColorBrewer PSCBS]; }; +aroma_core = derive { name="aroma.core"; version="2.13.1"; sha256="1085qh092sij4c3wl3g10wc8agr13bnqbrq3k4fnm53jpa786qsx"; depends=[R_utils R_filesets R_devices R_methodsS3 R_oo R_cache R_rsp matrixStats RColorBrewer PSCBS]; }; +arqas = derive { name="arqas"; version="1.0"; sha256="1wqrvrmwpgkccr8vi0kn6xiy191ib1zxzrclb6v564bkj16s2w5q"; depends=[distr ggplot2 reshape iterators doParallel foreach fitdistrplus gridExtra]; }; arrayhelpers = derive { name="arrayhelpers"; version="0.76-20120816"; sha256="1q80dykcbqbcigv2f9xg1brfm3835i0zvs0810q6kh682a3hpqbi"; depends=[]; }; ars = derive { name="ars"; version="0.5"; sha256="0m63ljb6b97kmsnmh2z5phmh24d60iddgz46i6ic4rirshq7cpaz"; depends=[]; }; arules = derive { name="arules"; version="1.1-6"; sha256="0xq0j4phwqw9cx2yzxx8xx4srnjjlv75cd463x959bycsp6fzb5r"; depends=[Matrix]; }; @@ -2434,12 +2481,13 @@ asd = derive { name="asd"; version="2.0"; sha256="1nnsbh6g0bhvhp6644zf2l6frr3qnl ash = derive { name="ash"; version="1.0-14"; sha256="15x16ld25i160asqf4z4difa6zn2yfgl04j8y8nqb0djymdx7a1f"; depends=[]; }; aspace = derive { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[splancs Hmisc shapefiles]; }; aspect = derive { name="aspect"; version="1.0-3"; sha256="12wyyr0ms8g3y96jz1x0y52dlma00j20h7hmm8m6y5p1lgk9kmcd"; depends=[]; }; +asremlPlus = derive { name="asremlPlus"; version="1.10-16"; sha256="17k1syfdsg097pawldw5mgy3a325p8k7xk99qpcivcl3pzsmw79q"; depends=[dae ggplot2]; }; assertive = derive { name="assertive"; version="0.2-4"; sha256="0xc561fi322qd5z7ss2zi69nl3i8i56w8bksgd38fpjigg0x9fwl"; depends=[knitr]; }; assertr = derive { name="assertr"; version="0.4.1"; sha256="1h77iisvyakccm7v1iqva04s1hn197sjcy28832cagqg89qlsg31"; depends=[dplyr]; }; assertthat = derive { name="assertthat"; version="0.1"; sha256="0dwsqajyglfscqilj843qfqn1ndbqpswa7b4l1d633qjk9d68qqk"; depends=[]; }; assist = derive { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[nlme lattice]; }; aster = derive { name="aster"; version="0.8-30"; sha256="0vdlimkkmd9ar5v3xrbi9gshvj980l7641brd7cqs78sqf0v71fn"; depends=[trust]; }; -aster2 = derive { name="aster2"; version="0.1"; sha256="1qbh1l2cnhvdfxaw1bv8cpj96nv03g155b1xh1vdigniwc04mssw"; depends=[]; }; +aster2 = derive { name="aster2"; version="0.2-1"; sha256="1gr9hx0mhyan0jy7wsl4ccsx9ahlvhfiq0j1xnffa4m3hzazisn5"; depends=[]; }; astro = derive { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; }; astroFns = derive { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; astrochron = derive { name="astrochron"; version="0.4.2"; sha256="1wrpcngny2b4k0p3xagh5967yvvgxcsp87xcdp4raf4n1v3nk2xx"; depends=[multitaper IDPmisc fields]; }; @@ -2466,6 +2514,7 @@ bReeze = derive { name="bReeze"; version="0.4-0"; sha256="1znhmb2inbfv574adhwjwk babar = derive { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive { name="babel"; version="0.2-6"; sha256="1dsxjnhr0cky7wlzz8pr8rn3cldfcyrh8v6gn2ba4abr0df7i4dd"; depends=[]; }; babynames = derive { name="babynames"; version="0.1"; sha256="0qq0303mmcnpfy5630d7rqmb8rl36p7hg2z842rzd4lkhy8c2l07"; depends=[]; }; +backShift = derive { name="backShift"; version="0.1.1"; sha256="11mr2pdg63xa5yrybv91fxz69jizpshs67i7a8lb84n6ydaq1pj3"; depends=[jointDiag clue pcalg igraph matrixcalc reshape2]; }; backtest = derive { name="backtest"; version="0.3-2"; sha256="06q488pynxgis1m6rxc8hgscpy8vimffpi4aamviwb089sjzilnn"; depends=[lattice]; }; bagRboostR = derive { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; }; bamdit = derive { name="bamdit"; version="1.1-1"; sha256="0f865yfwd2pvbkcx8jm4iyilldmprsgyqnscp1n28rp3sbdii4bl"; depends=[coda rjags]; }; @@ -2480,7 +2529,7 @@ basicspace = derive { name="basicspace"; version="0.15"; sha256="11aqrai26kdwszz batade = derive { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; batch = derive { name="batch"; version="1.1-4"; sha256="03v8a1hsjs6nfgmhdsv6fhy3af2vahc67wsk71wrvdxwslmn669q"; depends=[]; }; batchmeans = derive { name="batchmeans"; version="1.0-2"; sha256="126q7gyb1namhb56pi0rv9hchlghjr95pflmmpwhblqfq27djss2"; depends=[]; }; -bayesDccGarch = derive { name="bayesDccGarch"; version="1.0"; sha256="1xgznixi0wdpqbqjacf5viyz69fjd0xbsdgvkgq2d8pjbgp18s0a"; depends=[coda]; }; +bayesDccGarch = derive { name="bayesDccGarch"; version="1.1"; sha256="1gjba5c9vfgvhlard6k47rc2f4r497qy4ybjwr57rm3n3jb0vkl1"; depends=[numDeriv coda]; }; bayesDem = derive { name="bayesDem"; version="2.4-1"; sha256="0s2dhy8c90smvaxcng6ixhjm7kvwwz2c4lgplynrggrm8rfb19ay"; depends=[gWidgets gWidgetsRGtk2 bayesTFR bayesLife bayesPop RGtk2 wpp2012]; }; bayesGARCH = derive { name="bayesGARCH"; version="2.0.1"; sha256="1gz18wjikkg3yf71b1g21cx918dyz89f5m295iv8ah807cdx7vjk"; depends=[mvtnorm coda]; }; bayesGDS = derive { name="bayesGDS"; version="0.6.1"; sha256="0134x5knwp9pmkjyzgi1k7hjj92sym1p0zq98sizlbs0mff2p2s4"; depends=[Matrix]; }; @@ -2507,7 +2556,7 @@ bcp = derive { name="bcp"; version="3.0.1"; sha256="08sa1az1ljsi00zmj3l7z8p1j5im bcpa = derive { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[Rcpp plyr Rcpp]; }; bcpmeta = derive { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; }; bcrm = derive { name="bcrm"; version="0.4.4"; sha256="0gcigc7505fsk1m70df3n0dz553adkbs8yz2bhskb4qrw4gbmvr7"; depends=[mvtnorm ggplot2]; }; -bcv = derive { name="bcv"; version="1.0"; sha256="053if27miv46mbkni6pcpdpz0l336r5l95k7927dqalnri894xwz"; depends=[]; }; +bcv = derive { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; }; bda = derive { name="bda"; version="5.1.3"; sha256="0v2xki9a1j6y42x03a3rrm746xx4qd3ris1m0k7alh25j3ayhs3p"; depends=[]; }; bde = derive { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[shiny ggplot2]; }; bdoc = derive { name="bdoc"; version="1.2"; sha256="15d7grc0a1hakkxhgbm2gp0awggzlmsp8zf8abj5bgfih63gcmj2"; depends=[]; }; @@ -2527,7 +2576,7 @@ benchmark = derive { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nz benford_analysis = derive { name="benford.analysis"; version="0.1.1"; sha256="00ynk1af5nbq8bn8y77sckx4w32g5zxcp06pdpcxwvp38d7hxhvc"; depends=[data_table]; }; bentcableAR = derive { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; ber = derive { name="ber"; version="4.0"; sha256="0gl7rms92qpa5ksn8h3ppykmxk5lzbcs13kf2sjiy0r2535n8ydi"; depends=[MASS]; }; -berryFunctions = derive { name="berryFunctions"; version="1.7.1"; sha256="1xpmpbls0vjyi51k7sd1v8s7lp4s1549javcg3yinmvxp9xhwfkx"; depends=[]; }; +berryFunctions = derive { name="berryFunctions"; version="1.8.1"; sha256="0plksyprbc5537005aw0yswwpahxk23c16lrq77zspzfa60i2vf0"; depends=[]; }; bestglm = derive { name="bestglm"; version="0.34"; sha256="0b6lj91v0vww0fy50sqdn99izkxqbhv83y3zkyrrpvdzwia4dg9w"; depends=[leaps]; }; betafam = derive { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; betapart = derive { name="betapart"; version="1.3"; sha256="0h2y2c3q6njzh2rlxh8izgkrq9y7abkbb0b13f2iyj9pnalvdv52"; depends=[ape geometry picante rcdd]; }; @@ -2545,7 +2594,7 @@ bglm = derive { name="bglm"; version="1.0"; sha256="1ln5clsfhpzjkm6cjil0lfqg687b bgmm = derive { name="bgmm"; version="1.7"; sha256="00bjwmgqvz053yczvllf1nxy1g88fgwrrzhnw309f2yjr1qvjbgg"; depends=[mvtnorm car lattice combinat]; }; biasbetareg = derive { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bibtex = derive { name="bibtex"; version="0.4.0"; sha256="0sy1czwjff3kdfnmlkp036qlnw8dzdl5al7izy1cc0535hsijv0d"; depends=[]; }; -biclust = derive { name="biclust"; version="1.1.0"; sha256="0ffsgjg7dvr5nh238abhawz9k775szh8lxl75bqjvxgqiv07f3hc"; depends=[MASS colorspace lattice flexclust]; }; +biclust = derive { name="biclust"; version="1.2.0"; sha256="03vkj7zp3dl4zbv2gzv9pahcd1018lbv4ixghvv1g0fsbndrybdg"; depends=[MASS colorspace lattice flexclust]; }; bifactorial = derive { name="bifactorial"; version="1.4.7"; sha256="187zlsqph7m63wf6wajvs6a4a08aax9hiqssgvma6cpkpisfiz4k"; depends=[mvtnorm multcomp lattice Rcpp Rcpp]; }; bigGP = derive { name="bigGP"; version="0.1-5"; sha256="0hlfylwinkwz2s8wgqf6qwxrrdx5a02ln13y4arfwwlqi1kw0s4q"; depends=[Rmpi]; }; bigRR = derive { name="bigRR"; version="1.3-10"; sha256="08m77r9br6wb9i21smaj4pwwpq3nxdirs542gnkrpakl7bvyp6s3"; depends=[hglm DatABEL]; }; @@ -2556,6 +2605,7 @@ biglars = derive { name="biglars"; version="1.0.2"; sha256="17zs25dvlja9ynx2fm5f biglm = derive { name="biglm"; version="0.9-1"; sha256="1z7h4by457z93k5i6qf5rq7xmd1y2kcd1rq4pv465cd32d4mb2g1"; depends=[DBI]; }; bigmemory = derive { name="bigmemory"; version="4.4.6"; sha256="1pplnpxqg380l5mjgz0ak4ipsx7x54339n2wr3dd29xv3w2fb5rp"; depends=[bigmemory_sri BH BH]; }; bigmemory_sri = derive { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; +bigml = derive { name="bigml"; version="0.1.2"; sha256="0vl5krjbgckknxwl26b2hn63jhb80zbn7abpckhxzxfxzncpnfz9"; depends=[RJSONIO RCurl plyr]; }; bigpca = derive { name="bigpca"; version="1.0"; sha256="1s4qmg7xl8z0sv1b1vfqw0r5cvlbrxx1n0m03ira8fpykcck2clm"; depends=[reader NCmisc bigmemory biganalytics bigmemory_sri BH irlba]; }; bigrf = derive { name="bigrf"; version="0.1-11"; sha256="0lazi8jk8aapdyyynd5yfcbn4jpjyxh8l64ayd0jj3nisl6hvmdh"; depends=[bigmemory foreach bigmemory BH]; }; bigrquery = derive { name="bigrquery"; version="0.1.0"; sha256="15ibgi6bqvn0ydq8jx1xhwkwpwwyd7w4f2ams2gpafpysc2f2ks6"; depends=[httr jsonlite assertthat R6 dplyr]; }; @@ -2580,13 +2630,13 @@ binseqtest = derive { name="binseqtest"; version="1.0"; sha256="103nbi3zq9m63266 bio_infer = derive { name="bio.infer"; version="1.3-3"; sha256="14pdv6yk0sk6v8g9p6bazbp7mr3wmxgfi6p6dj9n77lhqlvjcgm9"; depends=[]; }; bio3d = derive { name="bio3d"; version="2.2-2"; sha256="0sqwl27n15sbablw4mcqgf0w2k28jc59wf8yqxrmqbg8cckfsh9j"; depends=[]; }; bioPN = derive { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; -biogas = derive { name="biogas"; version="1.0"; sha256="0c7ayhmy69k08f32i1agri349wm1addibw4xp9rjq9cmkdhazvbd"; depends=[]; }; +biogas = derive { name="biogas"; version="1.0.1"; sha256="0fjxfj4c4clyp4gkzm0dl5ls7pbyaxmff56dw59wswijm4na2il7"; depends=[]; }; biogram = derive { name="biogram"; version="1.1"; sha256="04nkm972x1nzlacfjfk3i4gsqbfhrfaygmmw13hrp47j8snv8r26"; depends=[slam bit]; }; biom = derive { name="biom"; version="0.3.12"; sha256="18fmzp2zqjk7wm39yjlln7mpw5vw01m5kmivjb26sd6725w7zlaa"; depends=[plyr RJSONIO Matrix]; }; biomod2 = derive { name="biomod2"; version="3.1-64"; sha256="0ymqscsdp5plhnzyl256ws9namqdcdxq3w5g79ymfpymfav10h3a"; depends=[sp raster reshape ggplot2 abind rasterVis pROC nnet gbm mda randomForest rpart MASS]; }; bionetdata = derive { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; biopara = derive { name="biopara"; version="1.5"; sha256="1fhhs6lkm3iphlkx6wklh9sgr1mkjkka9wv2m8fnk0xw01bdsyl5"; depends=[]; }; -biorxivr = derive { name="biorxivr"; version="0.1.0"; sha256="0277kand29vsxczjg1wnlvx494w67x6pd1ybg735ni62is567adg"; depends=[XML]; }; +biorxivr = derive { name="biorxivr"; version="0.1.1"; sha256="0v2jmqpdcci3wwpcrakqcssahy3yx07s265axs14615w74dgd4kl"; depends=[XML]; }; bios2mds = derive { name="bios2mds"; version="1.2.2"; sha256="1avzkbk91b7ifjba5zby5r2yw5mibf2wv05a4nj27gwxfwrr21cd"; depends=[amap e1071 scales cluster rgl]; }; biosignalEMG = derive { name="biosignalEMG"; version="1.0.2"; sha256="0ywb59w3rgac59gif1jba8qi7rjdsdj7y5czj7kv8lf01vd5dl3l"; depends=[]; }; biotools = derive { name="biotools"; version="2.1"; sha256="15ncx700v5ignr3gggz5zfspskzpj3kpzsy6rg2y4pnjm1vlndgj"; depends=[rpanel tkrplot MASS boot]; }; @@ -2607,7 +2657,7 @@ blender = derive { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cq blighty = derive { name="blighty"; version="3.1-4"; sha256="1fkz3vfcnciy6rfybddcp5j744dcsdpmf7cln2jky0krag8pjzpn"; depends=[]; }; blkergm = derive { name="blkergm"; version="1.1"; sha256="0giknhcl14b4djn5k5v5n33b7bc3f8x6lx2h4jr25kpd89aynhq5"; depends=[network ergm statnet_common ergm]; }; blm = derive { name="blm"; version="2013.2.4.4"; sha256="1w6c30cq38j4i1q4hjg12l70mhy5viw886l1lsnxyvniy113in4i"; depends=[]; }; -blme = derive { name="blme"; version="1.0-2"; sha256="11m98j9xr6w0hfcss4bbx2aa34gnc5p9if9r8ilw9ify18by77np"; depends=[lme4]; }; +blme = derive { name="blme"; version="1.0-3"; sha256="0kr2svvjbsravvahg96f6q2whfgyx2y4wgbpj9caf3rc2bd5s4nj"; depends=[lme4]; }; blmeco = derive { name="blmeco"; version="1.0"; sha256="0shhyvqq88i0nr6wdf78rlqk4c91jv26nrb19jcjcw2wxv1mnazq"; depends=[MASS MuMIn arm lme4]; }; blockTools = derive { name="blockTools"; version="0.6-2"; sha256="0h04179ybklwbs69rg73p5h09fi3vzagh845r00ivw4iv18anq40"; depends=[MASS]; }; blockcluster = derive { name="blockcluster"; version="3.0.2"; sha256="1qd92lj3ckrj7cvl9zs85igb0974wy5s4zwdnvfyvrsi2bqi3qp8"; depends=[Rcpp Rcpp RcppEigen]; }; @@ -2624,7 +2674,7 @@ bmk = derive { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834l bmmix = derive { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; bmp = derive { name="bmp"; version="0.2"; sha256="059ps1sy02b22xs138ba99fkxq92vzgfbyf2z5pyxwzszahgy869"; depends=[]; }; bmrm = derive { name="bmrm"; version="3.0"; sha256="0ix5hfsvs2vnca0l1aflynddw6z85cqdyxn0y7xynkkapk182g4p"; depends=[lpSolve LowRankQP]; }; -bnlearn = derive { name="bnlearn"; version="3.8"; sha256="1jy47sy8pqjwjykdrcfrrdjzrgwgvmzpjxcnh73pgaa2scm9lpk6"; depends=[]; }; +bnlearn = derive { name="bnlearn"; version="3.8.1"; sha256="07lh67nw7wpjimim44zpw8h1rq4yqa2sdjcwj95bmyc25hlzv1s1"; depends=[]; }; bnormnlr = derive { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpmr = derive { name="bnpmr"; version="1.1"; sha256="0hvwkdbs2p2l0iw0425nca614qy3gsqfq4mifipy98yxxvgh8qgc"; depends=[]; }; boa = derive { name="boa"; version="1.1.7-2"; sha256="1n7i0i8jq2sa1kzhbgyqzl9d53wja7fsxd7rligc8xjm0sdsb386"; depends=[]; }; @@ -2633,11 +2683,11 @@ bold = derive { name="bold"; version="0.2.6"; sha256="15hnbspp5s293v2jykmirf9rvd boolean3 = derive { name="boolean3"; version="3.1.6"; sha256="00s6ljhqy8gpwa3kxfnm500r528iml53q364bjcl4dli2x85wa9p"; depends=[optimx numDeriv lattice rgenoud mvtnorm rlecuyer]; }; boostSeq = derive { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; }; boostr = derive { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; -boot = derive { name="boot"; version="1.3-15"; sha256="0pyznvhbb8237nqab6ylmis73q0s3fgmf65fmh0rr3ryljvzp6sq"; depends=[]; }; +boot = derive { name="boot"; version="1.3-16"; sha256="1fdp3yccsffqpm209dy11085i81cj7g36l34bb94rmd27mqiwrfi"; depends=[]; }; bootES = derive { name="bootES"; version="1.01"; sha256="00y901d5cjdpzras5w6mv851h5zgp36m5ib6dazs4vqrfpqymva8"; depends=[boot]; }; bootLR = derive { name="bootLR"; version="0.9"; sha256="0p4hq8nfdd8jw8r8dmlb6va4g7jjnkbsah69hissa9lqawbj9pi7"; depends=[boot]; }; bootRes = derive { name="bootRes"; version="1.2.3"; sha256="0bb7w6wyp9wjrrdcyd3wh44f5sgdj07p5sz5anhdnm97rn1ib6dz"; depends=[]; }; -bootSVD = derive { name="bootSVD"; version="0.2"; sha256="1b31gxlbysng5ysa18mzlp3vlc9jhn51hia0z1j9g47wi0r0f274"; depends=[ff]; }; +bootSVD = derive { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; bootnet = derive { name="bootnet"; version="0.1"; sha256="18bx0za81z8za0hswj1qwl7a721xbvfpjz0hsih7glf6n5hn0cyp"; depends=[ggplot2 IsingFit qgraph dplyr gtools corpcor]; }; bootruin = derive { name="bootruin"; version="1.2-1"; sha256="1ii1fcj8sn9x82w23yfzxkgngrgsncnyrik4gcqn6kv7sl58f4r3"; depends=[]; }; @@ -2649,9 +2699,9 @@ boral = derive { name="boral"; version="0.6"; sha256="0ldd5slj90xsch498brll6sjbl boss = derive { name="boss"; version="2.1"; sha256="1knsnf19b1xvvq20pjiv56anbnk0d51aq6z3ikhi8y92ijkzh0y8"; depends=[lme4 geepack Matrix ncdf]; }; boussinesq = derive { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; boxplotdbl = derive { name="boxplotdbl"; version="1.2.2"; sha256="01bvp6vjnlhc4lndxwd705bzlsh7zq0i9v66mxszrcz6v8hb9rwi"; depends=[]; }; -boxr = derive { name="boxr"; version="0.2.5"; sha256="03lxdhjajjdpf58c50j1dn4i4bqy8s7h5xgr6m87r7g1v91x23y4"; depends=[httr httpuv assertthat stringr dplyr digest jsonlite]; }; +boxr = derive { name="boxr"; version="0.2.6"; sha256="1b7xvblw2a1p8sr1gxrak404d43haa4kk7blnyir1pql8dcw24jd"; depends=[httr httpuv assertthat stringr dplyr digest jsonlite]; }; bpca = derive { name="bpca"; version="1.2-2"; sha256="05ldz6b2s379mymj8jzvia9x6gj047gwsxvnv3zj9x8b1hvndnd6"; depends=[scatterplot3d rgl]; }; -bpcp = derive { name="bpcp"; version="1.2.4"; sha256="06q8zkf7z31ax3pb2xmww3l3axcmhvmgrfri1aikhi7ifgcfc979"; depends=[]; }; +bpcp = derive { name="bpcp"; version="1.2.5"; sha256="0dzsj0xhvn7jc8nb54191hwpw4sm7g13af5y3sgp9bhvcym8p31q"; depends=[]; }; bpkde = derive { name="bpkde"; version="1.0-7"; sha256="1ls6rwmbgb2vzsjn34r87ab8rnz3ls61g6f4x3jpglbk0j91f0h8"; depends=[]; }; bqtl = derive { name="bqtl"; version="1.0-30"; sha256="1v1p3wvqm5hmwpnjqaz8vlpzm036gpzpxsvy7m0v4x7nc5vrq7g6"; depends=[]; }; brainR = derive { name="brainR"; version="1.2"; sha256="1515v6kk73p4s3vrnkpkilfxfyqrf7b762sq6j364ygsyfybvh2z"; depends=[rgl misc3d oro_nifti]; }; @@ -2664,7 +2714,7 @@ brew = derive { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6y brewdata = derive { name="brewdata"; version="0.4"; sha256="1i8i3yhyph212m6jjsij61hz65a5rplxw8y2xqf6daqiisam5q6i"; depends=[RCurl XML stringdist]; }; brglm = derive { name="brglm"; version="0.5-9"; sha256="14hxjamxyd0npak8wyfmmb17qclj5f86wz2y9qq3gbyi2s1bqw2v"; depends=[profileModel]; }; bride = derive { name="bride"; version="1.3"; sha256="03k9jwklg1l8sqyjfh914570880ii0qb5dd9l0bg0d0qrghbj0rk"; depends=[]; }; -brms = derive { name="brms"; version="0.1.0"; sha256="0cx01d65vwsrxlhvxwwlaviz1lvxhl0hd8qw0bna99w8ypsqfp3i"; depends=[ggplot2 Rcpp coda ggmcmc gridExtra]; }; +brms = derive { name="brms"; version="0.2.0"; sha256="1i515sz3paiwwkmgglqzb2gzb2y6m99kp95xaarpawsja8nxi2j0"; depends=[ggplot2 Rcpp abind coda ggmcmc gridExtra]; }; brnn = derive { name="brnn"; version="0.5"; sha256="0kf2fdgshk8i3jlxjfgpdfq08kzlz3k9s7rdp4bg4lg3khmah9d1"; depends=[Formula]; }; broman = derive { name="broman"; version="0.55-2"; sha256="04pg362gmxg5lvrv333mjq06lv0q3a1mq6wrbmy87jch6f10lazi"; depends=[assertthat RPushbullet jsonlite ggplot2]; }; broom = derive { name="broom"; version="0.3.7"; sha256="00z4kwxdqp6g35g4x6js9rc96z8i40hzgvhf5frj9dwfpxclk145"; depends=[plyr dplyr tidyr psych stringr]; }; @@ -2683,7 +2733,7 @@ bvpSolve = derive { name="bvpSolve"; version="1.2.4"; sha256="1ss25md3q59cm40rxw c060 = derive { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet survival mlegp tgp peperr penalizedSVM lattice]; }; c3net = derive { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive { name="cAIC4"; version="0.2"; sha256="13sp3wywv82wgi1vsbxwn68v9xigy0fi3mcwyxjmmgmnsxns2fza"; depends=[lme4 Matrix]; }; -cOde = derive { name="cOde"; version="0.1"; sha256="1cjp63lya2r82fgjwz8mnzs50x7hyzg87dkm006m76xs1iyv988i"; depends=[]; }; +cOde = derive { name="cOde"; version="0.2"; sha256="0741ghg0cqxvgwgvrvsgi75qlkirnm8cjc6bw6xbmkg97scrs5ck"; depends=[]; }; cSFM = derive { name="cSFM"; version="1.1"; sha256="1znxsqa8xdifmryg7jiqbpzm837n4n862kg5x1aki52crc4zyk3k"; depends=[sn mgcv mnormt MASS moments]; }; ca = derive { name="ca"; version="0.58"; sha256="10dp261sq56ixrrr8qq4filxpzszcinz5qv50g40dan0k75n7isb"; depends=[]; }; caTools = derive { name="caTools"; version="1.17.1"; sha256="1x4szsn2qmbzpyjfdaiz2q7jwhap2gky9wq0riah74q0pzz76ank"; depends=[bitops]; }; @@ -2716,7 +2766,7 @@ catIrt = derive { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybsp catR = derive { name="catR"; version="3.4"; sha256="0rgzcnqp18wb8m7f3m8mm7pv04a1irlknkrsrr4hhnzs0phf06yz"; depends=[]; }; catdata = derive { name="catdata"; version="1.2.1"; sha256="0fjylb55iw8w9sd3hbg895pzasliy68wcq95mgrh7af116ss637w"; depends=[MASS]; }; catenary = derive { name="catenary"; version="1.1"; sha256="0khdk61fh8ngr70qf9i2655h5nblj98r8zl724ljv1cjb5x1vphv"; depends=[ggplot2 boot]; }; -cati = derive { name="cati"; version="0.96"; sha256="07vvhar1skcmx0sqkp4bcrrlmb88llqpgg4vmdi4nqhw48kjyjqn"; depends=[nlme ade4 ape e1071 mice rasterVis hypervolume FD geometry vegan]; }; +cati = derive { name="cati"; version="0.99"; sha256="1xghdqmqfwi0wnzvrd896z4snyjqqs9kw3whmkd3cph8zf0jl931"; depends=[nlme ade4 ape e1071 mice rasterVis hypervolume FD geometry vegan]; }; catnet = derive { name="catnet"; version="1.14.8"; sha256="03y7ddjyra3cjq7savdgickmw82ncx4k01rn752sks6rpl6bjslc"; depends=[]; }; catspec = derive { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; causaleffect = derive { name="causaleffect"; version="1.1.1"; sha256="1rsn3zfi24vv1s03ki0aghw4kjls95dr25473fpbmsrmm8n48cqi"; depends=[ggm igraph XML]; }; @@ -2724,7 +2774,7 @@ causalsens = derive { name="causalsens"; version="0.1"; sha256="1v72zjplsa073f92 cba = derive { name="cba"; version="0.2-14"; sha256="067rm1rfz0rrq8xkzibd81pwvc9rx7ki46bncim4j5ra6i9pn24n"; depends=[proxy]; }; ccChooser = derive { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; ccaPP = derive { name="ccaPP"; version="0.3.0"; sha256="1wj5yij02372xarhvxsnh43v0l6xb2p8rflmskw6x86vpcdqd6zw"; depends=[Rcpp pcaPP robustbase RcppArmadillo Rcpp RcppArmadillo]; }; -cccd = derive { name="cccd"; version="1.04"; sha256="0mhqv9hzvw3w6wp23kvw4py54ij6x9r19b87i97wwgqr5rhhh1f3"; depends=[igraph plotrix proxy]; }; +cccd = derive { name="cccd"; version="1.5"; sha256="0m364zsrgr7mh1yhl2lqxpaf71gzq3y3pp9qgnj4spiy4iadyy7i"; depends=[igraph proxy deldir FNN]; }; cccp = derive { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp Rcpp RcppArmadillo]; }; cccrm = derive { name="cccrm"; version="1.1"; sha256="0q7vxzj3lblz5ddgzm8z99k0b0z194963hx96bbkqm4rv705dgb0"; depends=[nlme gdata]; }; ccda = derive { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; }; @@ -2737,10 +2787,10 @@ cdcsis = derive { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8 cds = derive { name="cds"; version="1.0.1"; sha256="1vw8ghvwsrpsq89yc4vjyfcw2wsz9dhqv1nlaqmv9b4wqm8gsb5h"; depends=[MASS limSolve clue colorspace copula]; }; cec2005benchmark = derive { name="cec2005benchmark"; version="1.0.4"; sha256="0bwv63l31hiy63372nvnyfkpqp61cqjag0gczd2v2iwsy3hyivpd"; depends=[]; }; cec2013 = derive { name="cec2013"; version="0.1-5"; sha256="07i2vp1x3qaw5di5vr5z70d47hh9174pjckjlhgv0f2w97slwc1i"; depends=[]; }; -celestial = derive { name="celestial"; version="1.2"; sha256="1bwxr37vkgxavl230jmvk1yp3acnkcpc8im10fsxh1nfxys254ap"; depends=[]; }; +celestial = derive { name="celestial"; version="1.3"; sha256="0icsrpw8y7r0ls8ch5b25fl4rnvs6x5y2wscmcmpp4fa4x64qqg6"; depends=[RANN]; }; cellVolumeDist = derive { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[minpack_lm gplots]; }; cellranger = derive { name="cellranger"; version="0.1.0"; sha256="1nfvh0bd99q7cili0hj6ifcg8r57fxv5k4634b7vkshy5rbc5fw1"; depends=[]; }; -cem = derive { name="cem"; version="1.1.10"; sha256="0lykr7sksii30nk4z8pvn4bdmvhm5952grrsvb63qblazg3b84qc"; depends=[nlme lattice randomForest combinat]; }; +cem = derive { name="cem"; version="1.1.16"; sha256="1crljw5ry3hynmfg9xfnbm3ypy57m33885xg39m88gzi6ydrnsvk"; depends=[lattice MatchIt combinat randomForest nlme]; }; censNID = derive { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; censReg = derive { name="censReg"; version="0.5-20"; sha256="15k7iq4275dyah3r47vgxsx6g6mr7ma53lkv6d1n89bczzys72kx"; depends=[maxLik glmmML sandwich miscTools]; }; cents = derive { name="cents"; version="0.1-41"; sha256="03ycbd0c8b7danbblaixg6sm7msr9ixkanqswczqa8n2frhjfgj0"; depends=[]; }; @@ -2758,7 +2808,7 @@ cghseg = derive { name="cghseg"; version="1.0.2"; sha256="1x7j62aq5c1xj8ss3pys51 changepoint = derive { name="changepoint"; version="1.1.5"; sha256="090rak3ydlh92w0mpp2sjjx4m9x33clcs77waj20gzxbq38mqdci"; depends=[zoo]; }; cheb = derive { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; chebpol = derive { name="chebpol"; version="1.3-1367"; sha256="0w1yfnag0sjqjn7g5yn3wd19kkwzcchb491335h70rm360m1kr0y"; depends=[]; }; -checkmate = derive { name="checkmate"; version="1.5.2"; sha256="0sllckm82lxiar3mm3sl4zcf9nhp7x7hfhpz1kiawaxfq7z9436g"; depends=[]; }; +checkmate = derive { name="checkmate"; version="1.5.3"; sha256="1d9szbszql0nz1zxplsr0w9f1c9vi11mjr5xg5960slb5v086x0g"; depends=[]; }; checkpoint = derive { name="checkpoint"; version="0.3.10"; sha256="147phhsv5g8k23fd355jqjqpjjj8n3s0bblm8mv5c3d0322li7ac"; depends=[]; }; cheddar = derive { name="cheddar"; version="0.1-629"; sha256="13fmr37jj7dky5jrpr20z1iai9jbnpmwsh2pbzjwvib7561pyd6x"; depends=[]; }; chemCal = derive { name="chemCal"; version="0.1-34"; sha256="0sn0mhp2d9a9rddfpkiv1pkrmvnv4sy18c1x2ks0lwpaklg78fbs"; depends=[]; }; @@ -2796,23 +2846,24 @@ classify = derive { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qg classyfire = derive { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[snowfall e1071 boot neldermead ggplot2 optimbase]; }; clere = derive { name="clere"; version="1.1"; sha256="1jna5dqy47mldd557qxl7vr59v5lalhligvm3c4k6b2dfararhfr"; depends=[Rcpp Rcpp RcppEigen]; }; clhs = derive { name="clhs"; version="0.5-4"; sha256="0535mpl1dbm9ij1dvj8dsmv4fickdg47by1mvf71lgfk5mjxy5nc"; depends=[ggplot2 sp raster reshape2 plyr scales]; }; -clickstream = derive { name="clickstream"; version="1.1.3"; sha256="0vhwhklyxpirza6j7cq8rcv7mli2w1pkvld70ih8i1xb1dx3y19x"; depends=[igraph plyr reshape2 Rsolnp]; }; +clickstream = derive { name="clickstream"; version="1.1.4"; sha256="0z73phz31j7n49xmwdgv293qbg6ldfgibpd5713qyk7qkhk8hvl7"; depends=[igraph plyr Rsolnp data_table arules]; }; clifro = derive { name="clifro"; version="2.4-0"; sha256="1bjsfk4m7hgq8k1mw07zx34ibgmpxjw8sig9jjzsr5mp3v13kwp8"; depends=[lubridate XML selectr RCurl ggplot2 scales RColorBrewer reshape2]; }; climdex_pcic = derive { name="climdex.pcic"; version="1.1-5.1"; sha256="0sq5l5dmnwbq9y6zfrq7zp81c8bmxwkvl7y9iq6wi3qcr78ga6zy"; depends=[PCICt caTools Rcpp]; }; clime = derive { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; climwin = derive { name="climwin"; version="0.0.1"; sha256="1ajkqk6lj2d8gx7arkwrznrkrjvdc5g9789vwaawwczbdavyi8kd"; depends=[ggplot2 gridExtra evd lme4 lubridate MuMIn reshape]; }; clinUtiDNA = derive { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; -clinfun = derive { name="clinfun"; version="1.0.9"; sha256="1igj48kp8898inxp6ynz0sgrc54s6k8whzgf5d349z4dn2jvizsb"; depends=[mvtnorm]; }; +clinfun = derive { name="clinfun"; version="1.0.10"; sha256="1q69qn7ib0mzpx5cv69fcgflp9rfmys5j33lqdj4b3g1z036bqrr"; depends=[mvtnorm]; }; clinsig = derive { name="clinsig"; version="1.0-5"; sha256="1jb2qk6hfvms85whymrfpgvjp8pv33fbllpl8jg80yg1ppmg2jcg"; depends=[]; }; +clisymbols = derive { name="clisymbols"; version="1.0.0"; sha256="1g68kh1js6nssyzw4lpxp4d2h4rhlayhahaykxw4a4bd67fkw20p"; depends=[]; }; clogitL1 = derive { name="clogitL1"; version="1.4"; sha256="0m9yrg9mzzfv5qkdf6w55xyrjdghyrf27kk7b4x2gyvwvi5b7dkm"; depends=[Rcpp Rcpp]; }; cloudUtil = derive { name="cloudUtil"; version="0.1.10"; sha256="1j86vpd4ngrdpfjk44wb1mp0l88dxia64pjd2idfcd276giplh6s"; depends=[]; }; clpAPI = derive { name="clpAPI"; version="1.2.6"; sha256="1kgzmzf87b0j43ch21anmm2d73bj2d16slmyavpbkdwg72dg1sjb"; depends=[]; }; clue = derive { name="clue"; version="0.3-49"; sha256="1gz9imirwlvmvzn9j0rmdrrax2girf78xfrxw6mrhal66g48bsrj"; depends=[cluster]; }; clues = derive { name="clues"; version="0.5.6"; sha256="1g0pjj4as5wfc7qr3nwkzgxxxp3mrdq7djn8p8qjba6kcdjxak1i"; depends=[]; }; -clustMD = derive { name="clustMD"; version="1.0"; sha256="1i3c790k300a7y5xhqanp8f1bid2q3a0ajwgf5qsr6dv3ld4h7vj"; depends=[tmvtnorm mvtnorm truncnorm MASS mclust msm]; }; +clustMD = derive { name="clustMD"; version="1.1"; sha256="192li0nx2hwhh5y21xs70vrnzw3wxbzr95f06makaxcrwf4xlp16"; depends=[tmvtnorm mvtnorm truncnorm MASS mclust msm]; }; cluster = derive { name="cluster"; version="2.0.1"; sha256="09l2vydyabk7x19bblxbjm68vnmifz46m5k3csb1snpbhq6qx52c"; depends=[]; }; cluster_datasets = derive { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; -clusterCrit = derive { name="clusterCrit"; version="1.2.4"; sha256="150iq5gp5czb8m7niyi294jjy3dbfpwccgak7scahd5kz2vs07c7"; depends=[]; }; +clusterCrit = derive { name="clusterCrit"; version="1.2.5"; sha256="1xwbvvzrh2dz47y4snmhb96mriblk3czy7dp5bmyvckh5papr2xv"; depends=[]; }; clusterGeneration = derive { name="clusterGeneration"; version="1.3.4"; sha256="1ak8p2sxz3y9scyva7niywyadmppg3yhvn6mwjq7z7cabbcilnbw"; depends=[MASS]; }; clusterGenomics = derive { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; clusterPower = derive { name="clusterPower"; version="0.5"; sha256="1g2qpvizyk4q3qlgvar436nrfqxwp5y8yi2y6rch9ak5mbg3yzqb"; depends=[lme4]; }; @@ -2822,6 +2873,7 @@ clusterSim = derive { name="clusterSim"; version="0.44-2"; sha256="1xf3byri6mwlf clusterfly = derive { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[rggobi e1071 reshape2 plyr RGtk2]; }; clustergas = derive { name="clustergas"; version="1.0"; sha256="1vf4czpwk71yxd26vm5sal0ml20ssjrq4bmk31yzxydpxn495fg8"; depends=[cluster]; }; clustering_sc_dp = derive { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; +clustertend = derive { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; clusteval = derive { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp Rcpp]; }; clustrd = derive { name="clustrd"; version="0.1.2"; sha256="022lzp1wvbaa20d8hribgq9miy6i7jxm5m1p3p52h9b7bzga3q6g"; depends=[corpcor e1071 ggplot2 irlba]; }; clustsig = derive { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; @@ -2846,9 +2898,9 @@ coda = derive { name="coda"; version="0.17-1"; sha256="1qjsqf4xi6xii60dscn577gmh codadiags = derive { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; codep = derive { name="codep"; version="0.4-1"; sha256="1jkd6k80d6vyriwmq1car5zjms304zrdrfbjib664zxzx1wadf8z"; depends=[]; }; codetools = derive { name="codetools"; version="0.2-11"; sha256="1mal1xa7san28l6rssvanndsgm90qhvbskz840ybfwwix8bqnbmh"; depends=[]; }; -coefficientalpha = derive { name="coefficientalpha"; version="0.3.3"; sha256="1r38jlcl3z16xc410bcgcw1ck6nnby1mqwx5sk6g0lm3jbjcka57"; depends=[rsem lavaan]; }; +coefficientalpha = derive { name="coefficientalpha"; version="0.5"; sha256="0pfw64z7f0gp415nn7519rcw829a7wnwnjx94sc55jsvgb1di3kc"; depends=[rsem lavaan]; }; coefplot = derive { name="coefplot"; version="1.2.0"; sha256="1v6c3fk2wrjgs3b31vajmig6dvmp5acfm72wh0iffpg0qgvf5hh7"; depends=[ggplot2 plyr reshape2 useful scales proto]; }; -coenocliner = derive { name="coenocliner"; version="0.1-0"; sha256="0hys1a4ai09pax5ydcaq39ll3rdjzyhgvz72z0iv9fwv4fbmwbr9"; depends=[]; }; +coenocliner = derive { name="coenocliner"; version="0.2-0"; sha256="1ndz7nhkzb8y0akyf1ja39m60c1afk4sb8qk7m4xd3srd71wb35z"; depends=[]; }; coexist = derive { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; }; coin = derive { name="coin"; version="1.0-24"; sha256="1h1d6pi957qkmlk2j8f280sc6jkg328wnyxjk43yxj2zwmdnmgpd"; depends=[survival modeltools mvtnorm]; }; cold = derive { name="cold"; version="1.0-4"; sha256="00rl2h4pirzvgwi28pr94kkn233wvm2z8yyfsz6andbkjsihp6jw"; depends=[]; }; @@ -2864,11 +2916,12 @@ combinat = derive { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7l comclim = derive { name="comclim"; version="0.9.4"; sha256="0m6ynccscsrrq70p0drwrwxp4skc630kv1l5smh48pi8kagahj1g"; depends=[]; }; commandr = derive { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive { name="commentr"; version="0.1"; sha256="0kyi7xd2f2b1avk78bmkbagyjqwwx21hca670n38k1a28kvnjpix"; depends=[stringr]; }; +commonmark = derive { name="commonmark"; version="0.4"; sha256="0canhzzc91fpcg53zms12k382zj4db652vh5cn74xrp73z8yvabk"; depends=[]; }; compHclust = derive { name="compHclust"; version="1.0-2"; sha256="1h39krvz516xwsvn5987i1zbzan8vx2411qz6dad112hpss0vyk9"; depends=[]; }; compactr = derive { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; compare = derive { name="compare"; version="0.2-5"; sha256="073apjmw5hwslhnjwhff0m8lwszv29n6vbqy0wxl39pyzg7q2x41"; depends=[]; }; compareC = derive { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; -compareGroups = derive { name="compareGroups"; version="3.0"; sha256="0dgh72virrx9bwls5z9wbdh8rk0q1i08pmyh7wma532mx0yv8mzq"; depends=[Hmisc gdata xtable SNPassoc survival epitools HardyWeinberg]; }; +compareGroups = derive { name="compareGroups"; version="3.0.1"; sha256="185lz69al72p4s354vn6gvha3zbhyvf2fsfym0knyspgl08q3m2g"; depends=[Hmisc gdata xtable SNPassoc survival epitools HardyWeinberg]; }; compareODM = derive { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparison = derive { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; }; compeir = derive { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[lattice etm]; }; @@ -2884,7 +2937,7 @@ cond = derive { name="cond"; version="1.2-3"; sha256="0y7m7valk7zn40y62348czmdvf condGEE = derive { name="condGEE"; version="0.1-4"; sha256="0mqj2pc91n8h3arpd4b9f7ndbcnai21c67is22qg22wj7vhhs87h"; depends=[numDeriv rootSolve]; }; condMVNorm = derive { name="condMVNorm"; version="2015.2-1"; sha256="04563jljnjhbiaiq33gn5dxjfvv05xp3lhl3w942v0smy0cdhrh4"; depends=[mvtnorm]; }; condmixt = derive { name="condmixt"; version="1.0"; sha256="05q1fj7akf6lsq9rbcqqkzlx82jvk6mlvmwx6jzk8j228fwqmg90"; depends=[evd]; }; -coneproj = derive { name="coneproj"; version="1.5"; sha256="1xk6v5hp5v5hcxnl8fhb9ccv343yjpswrgm65p4046sw0b764pny"; depends=[Rcpp RcppArmadillo Rcpp]; }; +coneproj = derive { name="coneproj"; version="1.6"; sha256="1bx0j9r83c944aklyq4lxdhmskyiwh4f6i2fim5fi6hpf6n9ajds"; depends=[Rcpp RcppArmadillo Rcpp]; }; conf_design = derive { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; }; confidence = derive { name="confidence"; version="1.1-0"; sha256="11y2mjh9ykmsgf6km6f2w5rql1vqwick4jzmxg5gkfkiisvsq1cp"; depends=[knitr markdown plyr xtable ggplot2]; }; conformal = derive { name="conformal"; version="0.1"; sha256="0syb1p35r6fir7qimp2k51hpvl3xw45ma2hi7qz2xzw8cwhlii3a"; depends=[caret ggplot2 randomForest e1071]; }; @@ -2907,6 +2960,7 @@ corHMM = derive { name="corHMM"; version="1.16"; sha256="048bvnw2ib9x7yijlgp4d1l corTools = derive { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; }; corclass = derive { name="corclass"; version="0.1"; sha256="02mxypdrjwf8psk0j9ggbw14889a87c6lw11qki3s3biq52qsx3y"; depends=[igraph]; }; corcounts = derive { name="corcounts"; version="1.4"; sha256="0irlx62ql5rp5s7nnjdy6jh723wl4039wn10zxri8ihxwqsyyz3f"; depends=[]; }; +coreNLP = derive { name="coreNLP"; version="0.4-1"; sha256="0a6pc588ddi9qyi5gsnzzvm4k0p5sp5bnjrlsskaymzdq4rp6miz"; depends=[rJava XML plotrix]; }; coreTDT = derive { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; }; corpcor = derive { name="corpcor"; version="1.6.7"; sha256="1vfzi17vkvzbqgzhmpdhybb6lli0z9vm9p31cwb8bn8ddlkn5ll4"; depends=[]; }; corpora = derive { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; }; @@ -2925,27 +2979,31 @@ countrycode = derive { name="countrycode"; version="0.18"; sha256="1by3xws2c43ry covLCA = derive { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; }; covRobust = derive { name="covRobust"; version="1.1-0"; sha256="1nvy5cqs4g565qj2hhgk5spr58ps2bhas3i752rf7wvrskb89fk7"; depends=[]; }; covTest = derive { name="covTest"; version="1.02"; sha256="0p4di8bdjghsq5jd678dprlhiwnxr5piqlx2z7hi2bjjpvvl5657"; depends=[lars glmnet glmpath MASS]; }; +covr = derive { name="covr"; version="1.0.0"; sha256="1svq2dcqnd5iwq75nk38lxa3dshiwil2ksd3666713agbqzikgcz"; depends=[jsonlite rex devtools httr crayon htmltools]; }; covreg = derive { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; }; +cowplot = derive { name="cowplot"; version="0.3.1"; sha256="0sqnirrwm0x2gbmblrvpdghd4v76mhczkhlhr4nd7yjz4947gfcp"; depends=[ggplot2]; }; coxinterval = derive { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[survival timereg Matrix]; }; coxme = derive { name="coxme"; version="2.2-4"; sha256="186867w9lcx6il2nfa79g4fbljhak2imjn7hcwczmwz7k7sfa4nk"; depends=[survival bdsmatrix nlme Matrix bdsmatrix]; }; coxphf = derive { name="coxphf"; version="1.11"; sha256="0494szmhc7qp1qynrqf3kmna26h4ams40qr6w7qj4al54mkp0346"; depends=[survival]; }; coxphw = derive { name="coxphw"; version="3.0.0"; sha256="11pyd09dwkbixjz1riv8rz3jrp1ix6cbn1fw9nm8vnrc19x5lkz5"; depends=[survival]; }; coxrobust = derive { name="coxrobust"; version="1.0"; sha256="08hp0fz5gfxgs3ipglj6qfr6v63kzxkrzg650bmzabq8dvrxd97q"; depends=[survival]; }; coxsei = derive { name="coxsei"; version="0.1"; sha256="1agr0gmyy1f2x6yspj04skgpi1drpbc1fcbwhhhjsz1j6c64xagy"; depends=[]; }; +cp4p = derive { name="cp4p"; version="0.2"; sha256="1rm6dgfiv2dx17svlzyaiqiqkpip24ns5wp8lddr6gmpws581ywl"; depends=[MESS]; }; cpa = derive { name="cpa"; version="1.0"; sha256="14kcxayw4cdbjfa6bvfzqp8flwc0sr3hmh2dnr1dfax0hnccd71m"; depends=[]; }; cpca = derive { name="cpca"; version="0.1.2"; sha256="1pccsjahb1qynnxa0akhfpcmhfmdg4rd1s6pfqrdl7bwbcmq4lqf"; depends=[]; }; cpk = derive { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; cplexAPI = derive { name="cplexAPI"; version="1.2.11"; sha256="1rfvq2a561dz3szvrs9s5gsizwwp0b5rn4059v9divzw23clr2a9"; depends=[]; }; cplm = derive { name="cplm"; version="0.7-2"; sha256="0vwj130r5wbax9ixcn0fdznh1zrr0wq48iivmlymqbhbqajmv8fb"; depends=[coda Matrix biglm ggplot2 minqa nlme reshape2 statmod tweedie Matrix]; }; +cpm = derive { name="cpm"; version="2.0"; sha256="0k27r3bfqrdy3iwpzyh8mp8lr3ndcsc688g6mp5ha4blxiwgciyb"; depends=[]; }; cqrReg = derive { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[Rcpp quantreg Rcpp RcppArmadillo]; }; -cquad = derive { name="cquad"; version="1.0"; sha256="0pfga45lpq5lgw0jbvp5wasj5m6maj2xr00adsab4c0c5rm7x2wf"; depends=[]; }; +cquad = derive { name="cquad"; version="1.1"; sha256="09rzqdv59q81nsrpjhjbdwm3p803q51w18arjg8x8l2jcgk3zcga"; depends=[]; }; crackR = derive { name="crackR"; version="0.3-9"; sha256="18fr3d6ywcvmdbisqbrbqsr92v33paigxfbslcxf7pk26nzn2lly"; depends=[Hmisc evd]; }; cramer = derive { name="cramer"; version="0.9-1"; sha256="1dlapmqizff911v3jv8064ddg8viw28nq05hs77y5p4pi36gpyw4"; depends=[boot]; }; crank = derive { name="crank"; version="1.0-7"; sha256="1ni5icg1c9ypvcvcxrr7dcp1zbk4iwyns421rrqsgmpns06s59w6"; depends=[]; }; cranlogs = derive { name="cranlogs"; version="2.0.0"; sha256="13c8sa3s1xvb5naj4cy7d5azcbf716l0gp4x086sqd5dg1hqdy8b"; depends=[httr jsonlite]; }; crantastic = derive { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; crawl = derive { name="crawl"; version="1.4-1"; sha256="175w5933h5hhhjnrc0l1kg5q24b8pclnf5sf36gj1pmg8s58d1gp"; depends=[mvtnorm sp raster]; }; -crayon = derive { name="crayon"; version="1.2.0"; sha256="1qgc1bakj5hp4fwmm2m6bzqf0mi84v6zcvw04dgck3lk00dxd0k9"; depends=[memoise]; }; +crayon = derive { name="crayon"; version="1.3.0"; sha256="1s51ijdsss02d6wwbx2r14vz03w8b17757rh43i7nc1vh36ylbjk"; depends=[memoise]; }; crblocks = derive { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; }; crch = derive { name="crch"; version="0.1-0"; sha256="1f4y2dd6lxsryyjjv569bxh1b4ymcnma0m9k7j150anzvkbrgnjn"; depends=[Formula ordinal]; }; crimCV = derive { name="crimCV"; version="0.9.3"; sha256="1p2cma78fb9a2ckmwdvpb6fc0818xw2mvq565dgiimgkdmmr0iid"; depends=[]; }; @@ -2961,7 +3019,7 @@ crqa = derive { name="crqa"; version="1.0.5"; sha256="0kiw90p89mf207mmky98g2d4l9 crrSC = derive { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; }; crrstep = derive { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; crs = derive { name="crs"; version="0.15-24"; sha256="08k8vim4n85ll16zpkwbf3riz641kafn699qsg0h746zqzi1kfn7"; depends=[boot np quantreg rgl]; }; -crunch = derive { name="crunch"; version="1.1.1"; sha256="0a1nja6nnhga4f9kq4wy330pdrl8mj9c2mr75fdqkqgdll7dd96j"; depends=[httr jsonlite RCurl]; }; +crunch = derive { name="crunch"; version="1.2.1"; sha256="0p3d7iwphywyfb0m9s3fnqhdhf9klgf1cswilaz9ngxfzh5g3df2"; depends=[httr jsonlite RCurl]; }; csSAM = derive { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; csampling = derive { name="csampling"; version="1.2-2"; sha256="0gj85cgc3lgv7isqbkng4wgzg8gqcic89768q2p23k4jhhn6xm2w"; depends=[marg statmod survival]; }; cshapes = derive { name="cshapes"; version="0.4-2"; sha256="015mkh0iwdbhpbk8gpnq48pp026mfidd69rj70arpmg3knd2jvff"; depends=[sp maptools plyr]; }; @@ -2979,7 +3037,7 @@ cudaBayesregData = derive { name="cudaBayesregData"; version="0.3-11"; sha256="1 cudia = derive { name="cudia"; version="0.1"; sha256="1ms3bc8sp6l3bm75j418mmb707sy3gyvxznhfias3nd4sw7i074x"; depends=[MCMCpack mvtnorm]; }; cumSeg = derive { name="cumSeg"; version="1.1"; sha256="01hn3j1i7bi2r9vsqwbgy1f1alcisxyf4316xx57bg82lb34d0s5"; depends=[lars]; }; cumplyr = derive { name="cumplyr"; version="0.1-1"; sha256="07sz1wryl3kxbk67qyvnkrkdrp4virlsaia0y6rf9bqdw7rc6vi2"; depends=[]; }; -curl = derive { name="curl"; version="0.5"; sha256="1fws0402amazfa9wihgydrwrl19rmhi67shc3r1g8hvzfvax5ham"; depends=[]; }; +curl = derive { name="curl"; version="0.8"; sha256="1j24w2hswcs3hl47b60rz3scbqpd2s2dfa2fbf1c9xxb3fi1m38w"; depends=[]; }; currentSurvival = derive { name="currentSurvival"; version="1.0"; sha256="0bqpfwf4v4pb024a98qwg81m6zd7ljg1ps42ifhxpqx7b9gdyi6c"; depends=[survival cmprsk]; }; curvHDR = derive { name="curvHDR"; version="1.0-3"; sha256="0rq72prxv2r5nicss9mh4wpkfjvlbb885w85ag4qrqijzq6y8q04"; depends=[feature geometry hdrcde ks misc3d ptinpoly rgl]; }; curvetest = derive { name="curvetest"; version="2.2"; sha256="1lz6rx9fmgyrlci1dyanscp2a18ki9lhrwnrzhp062flysffimg6"; depends=[locfit R_oo R_methodsS3]; }; @@ -2997,6 +3055,7 @@ cycloids = derive { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bf cyphid = derive { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; }; cytoDiv = derive { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; d3Network = derive { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; +dMod = derive { name="dMod"; version="0.1"; sha256="0170hvgngwxr0qfl7knmj0l2gg053xj5yfd5hkfyjnl6ivcsw3c9"; depends=[cOde trust ggplot2]; }; dae = derive { name="dae"; version="2.7-0"; sha256="1pfd3zyvs29ij8xa1ngz2din4srl45rjnjc576h1mz16l7h5kx53"; depends=[ggplot2]; }; daewr = derive { name="daewr"; version="1.1-4"; sha256="0pmz4721999vf023hpvsf17k5fgqpwnisnwssmav46glhmzl2cyj"; depends=[lattice FrF2 BsMD]; }; daff = derive { name="daff"; version="0.1.4"; sha256="1g08m9qyrlwxdy9w18132dc9klz6ayw5jbn700vkzvqibfc1l7cx"; depends=[V8 jsonlite]; }; @@ -3016,9 +3075,9 @@ dataframes2xls = derive { name="dataframes2xls"; version="0.4.6"; sha256="18m4cb datalist = derive { name="datalist"; version="0.2"; sha256="0q82wira0sfi63cn66f5cfyd15f19ig7pbmpk56j38a3115l2fmn"; depends=[assertthat]; }; datamap = derive { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; datamart = derive { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[RJSONIO XML RCurl base64 gsubfn markdown]; }; -datamerge = derive { name="datamerge"; version="1.0-1"; sha256="03xb48igkh0f91iq6qc2j5xzqfy2n51ci5i850gn09mm9k4lxij1"; depends=[xtermStyle]; }; +datastepr = derive { name="datastepr"; version="0.0.1"; sha256="1dzx7mw9hl2f8q638m3vwva7mdlb59bgjc5rmpcjb5nxmylpx0vk"; depends=[dplyr lazyeval R6 magrittr rlist]; }; datautils = derive { name="datautils"; version="0.1.4"; sha256="0adg87p9rzz62cm0s80x71mhsg3yfg93gskv1hs1l8gaj78zd1y1"; depends=[deldir gplots gtools]; }; -dataview = derive { name="dataview"; version="2.0-9"; sha256="0519h2c33v04vwdd8nz9xmqha15svhxdj761d68qmi52jrw6858d"; depends=[xtermStyle]; }; +dataview = derive { name="dataview"; version="2.1.1"; sha256="1nn33h5c1h4a3zm1xm7sdz4s6sy0f3r53jhm7bv6qk7aiylwqf6v"; depends=[data_table xtermStyle]; }; date = derive { name="date"; version="1.2-34"; sha256="066zsddpw87x1bhl3479k6fd1wrl3x91n5rd454diwmwq2s8i5qb"; depends=[]; }; dave = derive { name="dave"; version="1.5"; sha256="0sw9hc4y9wdfbnnk6isg7z7sky6ni68pkjxdlrph5m7jcyqphz96"; depends=[labdsv vegan]; }; dawai = derive { name="dawai"; version="1.1"; sha256="0icf8iys980z0agyba94xa16400p2vdvg8hg52vvlgfc85ikqfkx"; depends=[mvtnorm ibdreg boot]; }; @@ -3036,7 +3095,7 @@ dclone = derive { name="dclone"; version="2.0-0"; sha256="1j8g955rvdgcmc9vnz3xiz dcmle = derive { name="dcmle"; version="0.2-4"; sha256="0ddb0x0lwk8jgx05k747sa33d2rrj4g2p4aj0m5bw1c9d5gril0m"; depends=[dclone rjags coda lattice]; }; dcmr = derive { name="dcmr"; version="1.0"; sha256="1a89wr1n8sykjbwa316zlmcffaysksrqnbd89anxqj8sgw9xv6jq"; depends=[ggplot2 KFAS plyr reshape2 tableplot]; }; dcv = derive { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; }; -ddalpha = derive { name="ddalpha"; version="1.1.0"; sha256="0kij4s24v4zchlfk4za5373ispapd1yzkp9ld2bwv4w562amnl5w"; depends=[MASS class robustbase Rcpp BH Rcpp]; }; +ddalpha = derive { name="ddalpha"; version="1.1.1"; sha256="1i0zchgp5pdfa9p1mpd9svbigbn01jqfl47nnqixzlgz1808929c"; depends=[MASS class robustbase Rcpp BH Rcpp]; }; ddeploy = derive { name="ddeploy"; version="1.0.2"; sha256="115k379l39gzddvn0l45l0sr0wyd7r486i28qs2hfyjnk1288vrs"; depends=[httr jsonlite]; }; ddst = derive { name="ddst"; version="1.03"; sha256="0zbqw4qmrh80jjgn8jzbnq3kykj1v5bsg6k751vircc0x9vnig3j"; depends=[orthopolynom evd]; }; deSolve = derive { name="deSolve"; version="1.11"; sha256="014fbrgzlarg2w27kq9qy7631hvhlf7ldrn5g8x2xibb260832s1"; depends=[]; }; @@ -3044,29 +3103,31 @@ deTestSet = derive { name="deTestSet"; version="1.1.2"; sha256="142261xjlz6h9vak deal = derive { name="deal"; version="1.2-37"; sha256="1nn2blmxz3j5yzpwfviarnmabbyivc25cbfhcf814avrhpysvpxa"; depends=[]; }; deamer = derive { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; }; debug = derive { name="debug"; version="1.3.1"; sha256="0mpwi6sippxyr1l8xf48xqv6qw6pmfkxs13k1gjyd7bkzlbchgqd"; depends=[mvbutils]; }; -decctools = derive { name="decctools"; version="0.2.0"; sha256="0k5w49s9s51m7w1h5adk26nw1ypwv5g1mlal78qmx5a4jzaf5bw9"; depends=[XLConnect stringr XML reshape2 RCurl lubridate plyr]; }; +decctools = derive { name="decctools"; version="0.2.1"; sha256="01h119gdvvbfnqfxaca7ca0yhpp6wggq0b69k6ww5lnkfnlj0sgi"; depends=[XLConnect stringr XML reshape2 RCurl lubridate plyr]; }; +decisionSupport = derive { name="decisionSupport"; version="1.101.1"; sha256="08qcvdwp0wgspnfnlhkpxz3p6y43pjf32p185knw8g81wr1950ip"; depends=[msm mvtnorm]; }; decode = derive { name="decode"; version="1.1"; sha256="06c6l2s32s1vri51hbnl17sxgkl7x8537prk0zzq6zlqhkwy6j77"; depends=[]; }; -decompr = derive { name="decompr"; version="3.0.0"; sha256="06m2k3rjna6nii1fc9b3v2wijkjrknyhskr1ampbdgwligddnzay"; depends=[]; }; +decompr = derive { name="decompr"; version="4.0.0"; sha256="161y5fyy5yqbsl68q9bd4b0s87c3qzv7x9jrzb2k9lxhm4h8qh0w"; depends=[]; }; decon = derive { name="decon"; version="1.2-4"; sha256="1v4l0xq29rm8mks354g40g9jxn0didzlxg3g7z08m0gvj29zdj7s"; depends=[]; }; deducorrect = derive { name="deducorrect"; version="1.3-5"; sha256="06lcqnay36fgkzvgbiq7b67r9lfgll3lxfr1pmx14vmivshb6mmm"; depends=[editrules]; }; deepnet = derive { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; }; degenes = derive { name="degenes"; version="1.1"; sha256="1xxn5j06qizywimrp1pl8z3yjdy1a167b9jnm77gmv87rp6j240c"; depends=[]; }; degreenet = derive { name="degreenet"; version="1.3-1"; sha256="0k0a1c1bv7zclrarfzf0d6avbd8zjnc3zd155jzmhi8dacr6r73w"; depends=[igraph network]; }; deldir = derive { name="deldir"; version="0.1-9"; sha256="0shzyqfqdkbhpf4hcwjjfzzizh6z56iamx2blhj79izg8xkvl2h9"; depends=[]; }; +delt = derive { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; deltaPlotR = derive { name="deltaPlotR"; version="1.5"; sha256="0hbaibl4b50pg9ypyhz4700w6kir4jiyyl0230a8hjmb92aqn303"; depends=[MASS]; }; demi = derive { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[R_utils plyr devtools]; }; deming = derive { name="deming"; version="1.0-1"; sha256="00v59qb6qwbwsvcwi59d0c0g3czfz1190ccj4dx6yarizr4g6cy8"; depends=[boot]; }; demoKde = derive { name="demoKde"; version="0.9-3"; sha256="1nkvsjms1gfvjz5l7zza0cgx4yqmn2kgnax44pysn0zqmhfny8bw"; depends=[]; }; demography = derive { name="demography"; version="1.18"; sha256="17r7sz5ikngc4qg495wmn99xawmllpx7rw2gpv8q8bypbc47wlfv"; depends=[forecast rainbow ftsa cobs mgcv strucchange RCurl]; }; dendextend = derive { name="dendextend"; version="0.18.3"; sha256="1s6bdkibb066yima31sn8ddp8qrwyx2zc84wf2kixs37ynhw1xi1"; depends=[magrittr whisker]; }; -dendextendRcpp = derive { name="dendextendRcpp"; version="0.5.1"; sha256="062f7yjsg196v8c09h6gvbhi0fzgwg40a8xhi751avkjc68z30cq"; depends=[Rcpp dendextend Rcpp]; }; +dendextendRcpp = derive { name="dendextendRcpp"; version="0.6.1"; sha256="125kjlfcj7y282j5g62c6j5hflvwngrm70waxym0lzr7xldwx7bk"; depends=[Rcpp dendextend Rcpp]; }; dendroextras = derive { name="dendroextras"; version="0.2.1"; sha256="0k1w374r4fvfcbzhrgcvklccjggyz755z7wc2vqfi3c5hvdb9ns4"; depends=[]; }; dendsort = derive { name="dendsort"; version="0.3.2"; sha256="0qj65jraj6ksmsfsrc4f3y8m7x5lqg9bqc9yb5s3bav2r8qjyhv6"; depends=[]; }; denovolyzeR = derive { name="denovolyzeR"; version="0.1.0"; sha256="0ys8pi3wp2cvywsnh07wldv6vcb8sn7f1divpaw8f6gnw7mnhimd"; depends=[dplyr reshape]; }; -denpro = derive { name="denpro"; version="0.9.1"; sha256="0ihgk300njhp6dzm1gsmknlx4c5h6kiwprgv3l3f29s6gdxx4f6n"; depends=[]; }; +denpro = derive { name="denpro"; version="0.9.2"; sha256="19hrpfd44jaavq81dbyj3frris4aflfc8lig0471whv0pc6jci2k"; depends=[]; }; densityClust = derive { name="densityClust"; version="0.1-1"; sha256="1apv9n871dshln5ccg8x3pwqi8yfx73ijfqsvzcljqnv36qpqpqd"; depends=[]; }; denstrip = derive { name="denstrip"; version="1.5.3"; sha256="10h8ivs7nd6gkf93zvqzqjb1lzfabvvs182636m67f86jfn6d4y4"; depends=[]; }; -depend_truncation = derive { name="depend.truncation"; version="2.3"; sha256="1n0v5cwmgpdyapr185s9przdsrxwaqf32038zm1na0yna8qmj8wl"; depends=[mvtnorm]; }; +depend_truncation = derive { name="depend.truncation"; version="2.4"; sha256="09jcg6gr4dy0ayayn8qvbgncnw6v76xzif90c7v64a09snhh8qv6"; depends=[mvtnorm]; }; depmix = derive { name="depmix"; version="0.9.13"; sha256="1dkwc1bjq19hjzichh78b41qslklgwib8mglbn23q9dsys8a3ccz"; depends=[MASS]; }; depmixS4 = derive { name="depmixS4"; version="1.3-2"; sha256="18xmn5fv9wszh86ph91yypfnyrxy7j2gqrzzgkb84986fjp2sxlq"; depends=[nnet MASS Rsolnp]; }; depth = derive { name="depth"; version="2.0-0"; sha256="1aj4cch3iwb6vz0bzj4w5r6jp2qs39g8lxi2nmpbi3m7a6qrgr2q"; depends=[abind rgl circular]; }; @@ -3093,6 +3154,7 @@ dglm = derive { name="dglm"; version="1.8.1"; sha256="12q49nf30ji4c7vysf2s48bif7 dgmb = derive { name="dgmb"; version="1.1"; sha256="134ckgq7rsdypg3c586kkhr9rx5ya34smp38i9lzvbdanzrpf33w"; depends=[MASS abind]; }; dgof = derive { name="dgof"; version="1.2"; sha256="02qnb3i131hx05k8l5n3xbl5sqmmc2fh19bsgcacgj8ixs4wyjvi"; depends=[]; }; dhglm = derive { name="dhglm"; version="1.2"; sha256="14wa0xkwb1qvkynk95aw6y4rx3jjdki19wdydg3wv5nfagcc4vdz"; depends=[Matrix numDeriv boot]; }; +diagonals = derive { name="diagonals"; version="0.2.0"; sha256="185nibadqvi6cvablh84ijs52wn2vg0xrc2idizll6lcxhf441yq"; depends=[]; }; diagram = derive { name="diagram"; version="1.6.3"; sha256="1iga574r31hz7g50nmicbah4rj4l46w6lgw3sz1b69iv6hpp7sq1"; depends=[shape]; }; diaplt = derive { name="diaplt"; version="1.2.1"; sha256="0pya6rqzsvc5nd3smhydvabarglc4nn04q605vbllmbhq9rv00pa"; depends=[]; }; dice = derive { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; @@ -3110,11 +3172,11 @@ digest = derive { name="digest"; version="0.6.8"; sha256="0m9grqv67hhf51lz10whym digitalPCR = derive { name="digitalPCR"; version="1.0"; sha256="0gjxlw0f2msh2x5jpzkpq8xc67zpv560q4vql5nwifm44dwar753"; depends=[]; }; dils = derive { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp Rcpp]; }; dinamic = derive { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; -diptest = derive { name="diptest"; version="0.75-6"; sha256="158azvdf76h5mp26lw2mjzwp4hwc2psqd9kn5989y4a1jmzxp2bg"; depends=[]; }; +diptest = derive { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; directPA = derive { name="directPA"; version="1.1"; sha256="0sri3981vk997qjl3c3zchn3vx0h3pdbnagcvds4bnrpycvn4bz8"; depends=[rgl calibrate]; }; directlabels = derive { name="directlabels"; version="2013.6.15"; sha256="083cwahz320r4w4jbh62pxmzn1i1hixp398zm8f2fpzh4qp5y44g"; depends=[quadprog]; }; dirmult = derive { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; -discSurv = derive { name="discSurv"; version="1.0.0"; sha256="0yq0vpdg6n21ar2r3jbgv2kxy7jn6gssyrrs6vfw4rk1q0bw6b2w"; depends=[functional Matrix matrixcalc mvtnorm numDeriv caret mgcv]; }; +discSurv = derive { name="discSurv"; version="1.1.0"; sha256="0jj055w0m749fdd90cqlyklxnjxfjhly179lmg9xfl69w4xrjc2l"; depends=[functional Matrix matrixcalc mvtnorm numDeriv caret mgcv]; }; disclap = derive { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; }; disclapmix = derive { name="disclapmix"; version="1.6"; sha256="0g1yg4n4pfy0295faw2scfh45m978ymmlx9bl3h8849kfaizkysi"; depends=[Rcpp disclap cluster Rcpp]; }; discreteMTP = derive { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; @@ -3130,6 +3192,7 @@ displayHTS = derive { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204 dispmod = derive { name="dispmod"; version="1.1"; sha256="141gzhnmxxl495cpjgd4wnvdrbz6715m6sd1pycrbaqrsdc1pv57"; depends=[]; }; disposables = derive { name="disposables"; version="1.0.0"; sha256="0xd8war6vav8swpwgmyi9hd6xv0j6j72yrk4sdcwiwzgs4l8cbfj"; depends=[]; }; dissUtils = derive { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; +distcomp = derive { name="distcomp"; version="0.25.1"; sha256="04cq4hsv1yl65cchhran9s3844w4knsbfja5wxfib5gh4dadriwk"; depends=[survival shiny httr digest jsonlite stringr R6]; }; distfree_cr = derive { name="distfree.cr"; version="1.0"; sha256="13y714l6b3kkpp75fdrsbdclgj1vw1xsvbj9pxi4lkwf11wwmrqr"; depends=[]; }; distillery = derive { name="distillery"; version="1.0-1"; sha256="0hfj4qbfb5219dm7yrgf2h4jrh2qsjhwrbv8gbrxcr0xf6gqbxmv"; depends=[]; }; distory = derive { name="distory"; version="1.4.2"; sha256="12j19cb1b4prm8m43gya15kia1ii1k0yy7hkngpn2vsyk7n2z65m"; depends=[ape]; }; @@ -3149,7 +3212,7 @@ diveRsity = derive { name="diveRsity"; version="1.9.73"; sha256="07lln4fkphwk8kg diversitree = derive { name="diversitree"; version="0.9-7"; sha256="0hr3hzrrbmfqbzcwn18lnqmychs9f21j1x214zry0jmw9pnai0s0"; depends=[deSolve ape subplex Rcpp Rcpp]; }; divo = derive { name="divo"; version="0.1.1"; sha256="10kymbvp46rzdd6a6p2fri9424sdxj2bhhv0fld7ikk71xgpfdrp"; depends=[RcppCNPy cluster]; }; dixon = derive { name="dixon"; version="0.0-5"; sha256="0x7x0l7p8kmkfqqqah8hck2r96b3w8padd41skd3q35vq8kmnsqc"; depends=[splancs spatstat]; }; -dkDNA = derive { name="dkDNA"; version="0.1.0"; sha256="1waqj8l48yqlzi3rb3ilxyx79n5d4w0sp02flvynwaxck6jvh8gc"; depends=[]; }; +dkDNA = derive { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; dlm = derive { name="dlm"; version="1.1-4"; sha256="0hyphl90bqc16j7in750pmiyq28hmc46kxgv7gj17c8xl9c9xqxm"; depends=[]; }; dlmap = derive { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[qtl ibdreg wgaim nlme mgcv]; }; dlmodeler = derive { name="dlmodeler"; version="1.4-2"; sha256="06gqvk2wrzz4kpsh4vyrbqwmxirsvg78qj7clvcxdac0sfqn4gl7"; depends=[KFAS]; }; @@ -3168,24 +3231,25 @@ doRedis = derive { name="doRedis"; version="1.1.1"; sha256="10ldfzq6m83b9w24az9b doSNOW = derive { name="doSNOW"; version="1.0.12"; sha256="0j71n0l9lbvwllw9iigvjgv0x8z2j57grl3yazkgcyzy0mcgf741"; depends=[foreach iterators snow]; }; docopt = derive { name="docopt"; version="0.4.3.3"; sha256="1vpq5q3kfgwijrgblvfipxqkw0m75rahnlmddpiyfgziyszbmidm"; depends=[stringr]; }; documair = derive { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; -domino = derive { name="domino"; version="0.2-6"; sha256="0xbp9gb38gxfdxfbzm792g4fnjsfp2ncncm8cmyra5wja6qwcwl8"; depends=[]; }; +domino = derive { name="domino"; version="0.2-7"; sha256="1wp2rikyggjvqpg29qjn3zcydyplmzhmbgq3xxrlq92swdyzmyy5"; depends=[]; }; dosresmeta = derive { name="dosresmeta"; version="1.3.0"; sha256="0yfm8dkds8abdl6jrib5vvgkyrd5cl5a99qs27safxx0fcpdiz4k"; depends=[mvmeta aod Matrix]; }; -dostats = derive { name="dostats"; version="1.3.1"; sha256="0xcp9arpvqb7am6caiazlgllvd3hhk4gqjd2wizr2jc5dkwfl4qn"; depends=[]; }; +dostats = derive { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; dotenv = derive { name="dotenv"; version="1.0"; sha256="1lxwvrhqcwj9q24x30xzrw8qqhxgyr88ja3fajm5hf3pwbw85yls"; depends=[magrittr falsy]; }; downloader = derive { name="downloader"; version="0.3"; sha256="0jpq8z3i9fkgs8wwjrq5qd7qfi5w3rxmzmsi1c1dxlnxzzhg6kxq"; depends=[digest]; }; dpa = derive { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[sem igraph]; }; dpcR = derive { name="dpcR"; version="0.1.4.0"; sha256="0fv17vzlsjb5cy1f0ll5gi5y8npavp2y7frzc595na5g15xphmxc"; depends=[binom chipPCR e1071 dgof multcomp qpcR pracma rateratio_test signal shiny spatstat]; }; dpglasso = derive { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; }; -dplR = derive { name="dplR"; version="1.6.2"; sha256="1w8p4pfzpvarwx9an3zm158pybif6p86k87gxqr2m2fgjsxzf9nb"; depends=[gmp digest lattice png stringi stringr XML]; }; +dplR = derive { name="dplR"; version="1.6.3"; sha256="0w94rdkpw5pbl9ywfvgpmzkwc88m5d5dwii5kw312nfhkb549q4x"; depends=[lattice Matrix digest gmp matrixStats png R_utils stringi stringr XML]; }; dplRCon = derive { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; dplyr = derive { name="dplyr"; version="0.4.1"; sha256="0kcwg922gzvwz1vfazwknb2sn2z9wfg9xhndi4280lg8cjdllcmw"; depends=[assertthat R6 Rcpp magrittr lazyeval DBI Rcpp BH]; }; dpmixsim = derive { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[oro_nifti cluster]; }; +dpmr = derive { name="dpmr"; version="0.1.7-1"; sha256="0nh45hg9za9w4w4syrrg54s1fpn6iikv431qkdjyinv8y1a3klga"; depends=[digest httr jsonlite magrittr rio]; }; dr = derive { name="dr"; version="3.0.9"; sha256="0gmxa5mbmkz54l75ss6kj5ka5kingf02pqj0xsfjxfv0311hwm52"; depends=[MASS]; }; -drat = derive { name="drat"; version="0.0.3"; sha256="1dxgicvjdkhiwkyadxwb6lfvvidx0w2y5sd5dm49chlv6zgjaa2i"; depends=[]; }; +drat = derive { name="drat"; version="0.0.4"; sha256="0pq74a0f1pkgfzgrh0r2xa2xkgxbanp8a5v13bmma09ghy5vnrhm"; depends=[]; }; drawExpression = derive { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; drc = derive { name="drc"; version="2.5-12"; sha256="1gw78n0w262wl6mdm5wvyp3f0hvrb2kj714acdxz84h2znxr9879"; depends=[MASS car gtools multcomp plotrix scales]; }; drfit = derive { name="drfit"; version="0.6.3"; sha256="0vx5niw6mfg85937sbjmc0z0gdgf9aj43rmkn1gljky7pq4j3hfn"; depends=[MASS RODBC drc]; }; -drgee = derive { name="drgee"; version="1.1.1"; sha256="0fb5k26c76d5hh09z97mhzx02fr52y2wixgxfgndbp48w826iqpc"; depends=[nleqslv survival]; }; +drgee = derive { name="drgee"; version="1.1.2"; sha256="1idnwa9yy1bijwbz9ffvc4q4lynhisgjvp3jcik3z3r96wfmz2ks"; depends=[nleqslv survival]; }; drm = derive { name="drm"; version="0.5-8"; sha256="1p6ixd7hnv41gfmvan3rv9xzz1279hmrnvfrl6pxwzs9zcnbb53a"; depends=[]; }; drmdel = derive { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; }; dropR = derive { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; }; @@ -3206,11 +3270,11 @@ dunn_test = derive { name="dunn.test"; version="1.2.4"; sha256="01z9rxhp9mli9b21 dupiR = derive { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; }; dvfBm = derive { name="dvfBm"; version="1.0"; sha256="0gx11dxkbnh759ysd1lxdarlddgr3l5gwd5b0klwvwsgck6jv529"; depends=[wmtsa]; }; dvn = derive { name="dvn"; version="0.3.3"; sha256="14ncna67qgknh20xdvxqddjhagj61niwpvz4ava9k0z68rgzmk5h"; depends=[RCurl XML]; }; -dygraphs = derive { name="dygraphs"; version="0.4.3"; sha256="1pg23lsmjg46nlb17r4shmr6aal3c3pqzkcznfadcc6cgm0afqp2"; depends=[magrittr htmlwidgets zoo xts]; }; +dygraphs = derive { name="dygraphs"; version="0.4.5"; sha256="08bc41d0f8adfnhv668p9sk4507i63xlfs3yswig1g7c0cnyaba9"; depends=[magrittr htmlwidgets zoo xts]; }; dyn = derive { name="dyn"; version="0.2-9"; sha256="16zd32567aj0gqv9chbcdgi6sj78pnnfy5k8si15v5pnfvkkwslp"; depends=[zoo]; }; dynBiplotGUI = derive { name="dynBiplotGUI"; version="1.1.3"; sha256="1wgxxn0nlmza7npvjbkfq6nmp30n719yqrav6jzxcp00dk3ymg6g"; depends=[tcltk2 tkrplot]; }; dynCorr = derive { name="dynCorr"; version="0.1-2"; sha256="0qzhhfhkwpq6mwg7y6sxpqvcj8klvivnfv69g7x3ycha1kw2xk3w"; depends=[lpridge]; }; -dynRB = derive { name="dynRB"; version="0.1"; sha256="16klhc3lrz9jnpd2br4niqsxzcbqri5y8qr2pr1fnqm64dvhnc8x"; depends=[]; }; +dynRB = derive { name="dynRB"; version="0.2"; sha256="00xpigx1bxjm03fz7x19wws7vqyaa6mgfp3zdb8f0mvw3hjkrvr0"; depends=[]; }; dynaTree = derive { name="dynaTree"; version="1.2-7"; sha256="06pw78j6wwx7yc175bns1m2p5kg5400vg8x14v4hbrz3ydagx4dn"; depends=[]; }; dynamicGraph = derive { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; dynamicTreeCut = derive { name="dynamicTreeCut"; version="1.62"; sha256="1y11gg6k32wpsyb10kdv176ivczx2jlizs1xsrjrs6iwbncwzrkp"; depends=[]; }; @@ -3225,7 +3289,7 @@ eRm = derive { name="eRm"; version="0.15-5"; sha256="0g4avcr709brvzcbmqmq35c7zvg eVenn = derive { name="eVenn"; version="2.2"; sha256="0k6m61z902spxxrc38504l73h022w5v74g39h4azd1ibr35yrl7j"; depends=[]; }; eaf = derive { name="eaf"; version="1.07"; sha256="0310lrqfm1l0lifak7wa6xn21bzzn27kbrrx0bidj4hibwv7sa4l"; depends=[modeltools]; }; earlywarnings = derive { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[ggplot2 moments tgp tseries fields nortest quadprog Kendall KernSmooth lmtest som spam]; }; -earth = derive { name="earth"; version="4.3.0"; sha256="1i52gm0ib1n6ffamb29np88b665l8vdigv482kvzh545kxc1z0jh"; depends=[plotmo]; }; +earth = derive { name="earth"; version="4.4.0"; sha256="1dsqyp93z8a2afvnhms4453cmhn7zbqf5fy18sl43gn616miarpv"; depends=[plotmo TeachingDemos]; }; easyanova = derive { name="easyanova"; version="4.0"; sha256="1d8fkgyqzphipvla7x8ipcf0by07iqx8xran15d2q82yq9iik5g9"; depends=[car nlme]; }; easynls = derive { name="easynls"; version="4.0"; sha256="1j2crqvgsf84bpwzf4qh5xkzn5mhxhfx9c0y3p8dbyn8bg7zc2rf"; depends=[]; }; ebGenotyping = derive { name="ebGenotyping"; version="1.0"; sha256="07dpvxl9xspkzvzkywclg8whgcw7vyakls38pshfypjpyd6iv8ga"; depends=[]; }; @@ -3244,17 +3308,17 @@ ecoretriever = derive { name="ecoretriever"; version="0.1"; sha256="1iwds81pyn9c ecosim = derive { name="ecosim"; version="1.2"; sha256="1lzjd6kl2864ngyiqyfnnra5ag9bj42pxb793gwp45r7z95k32rf"; depends=[deSolve stoichcalc]; }; ecospat = derive { name="ecospat"; version="1.1"; sha256="070vvx00gm36rwjz2g188jn7bkljs1c7j6ap6ssrl3ihzqvc1zdz"; depends=[ade4 ape gam gbm sp adehabitatHR adehabitatMA biomod2 dismo ecodist maptools randomForest spatstat raster rms]; }; ecoval = derive { name="ecoval"; version="1.0"; sha256="1szvr2ipb7bd0cyslhwwwyx5kw7yx3kpqcyzxfd9pk263bny323g"; depends=[utility rivernet]; }; -ecp = derive { name="ecp"; version="1.6.2"; sha256="0j416ns93m7vrb7dnyr4prqm213cg19hbgffvscnb67y3qwj6lic"; depends=[Rcpp Rcpp]; }; +ecp = derive { name="ecp"; version="2.0.0"; sha256="0cr3rzvd4bahg5idd857mgp005n075xql5kvjw0smsjbjh4p84wq"; depends=[Rcpp Rcpp]; }; edcc = derive { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; edeR = derive { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; }; edgeRun = derive { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table]; }; -editrules = derive { name="editrules"; version="2.7.2"; sha256="19g07caacwphvrqn900chrz3k6x4z8gmvlcvna5x2mqidcjkf25i"; depends=[igraph lpSolveAPI]; }; +editrules = derive { name="editrules"; version="2.9.0"; sha256="14mfa8flkym2rx9n7bq9icc9fsrk3szib3amx5l0008rxll9qnxm"; depends=[igraph lpSolveAPI]; }; edrGraphicalTools = derive { name="edrGraphicalTools"; version="2.1"; sha256="09y63xj3gqrz66mym20g4pmfwrb0wnc2n67692hnqq8dz31q7p3i"; depends=[rgl mvtnorm MASS lasso2]; }; eegAnalysis = derive { name="eegAnalysis"; version="0.0"; sha256="1lrwjbhm5fnf5fhyyga2b21j2snnmj3zfvfxfkvgsbdnzr3qxaxb"; depends=[e1071 wmtsa fields splus2R]; }; eegkit = derive { name="eegkit"; version="1.0-2"; sha256="10dksmc5lrl0ypifvmmv96xnndl2zx191sl79qif0gfs3wq3w4s0"; depends=[bigsplines eegkitdata ica rgl]; }; eegkitdata = derive { name="eegkitdata"; version="1.0"; sha256="1krsadhamv1m8im8sa1yfl7injvrc4vv3p88ps1mpn8hibk5g51m"; depends=[]; }; eeptools = derive { name="eeptools"; version="0.3.1"; sha256="0m6i0hiw565wgziknlf19rh2fq8zvzq2v5a0ppnwcv8vhbhyph3g"; depends=[ggplot2 MASS stringr maptools arm data_table memisc]; }; -effects = derive { name="effects"; version="3.0-3"; sha256="10v99rv18jl10q0zhd4rvkx7dgab3b8w46jv1npqk9lx172iaf1y"; depends=[pbkrtest lme4 nnet lattice colorspace]; }; +effects = derive { name="effects"; version="3.0-4"; sha256="0ypw49gighmg2azc2872y8r9rx9v3x0r2gsidgkwqlaqg95vfcd7"; depends=[lme4 nnet lattice colorspace]; }; effsize = derive { name="effsize"; version="0.5.4"; sha256="1dc90avbnb83nrm70wh0h45g3c6dcg8zh2ynklc2x86cqk7b264b"; depends=[]; }; ega = derive { name="ega"; version="1.0.1"; sha256="02mbadv505jz6nk1yp9xl12c9l9wnwpl5bajfbhgs837pdca438g"; depends=[ggplot2]; }; egcm = derive { name="egcm"; version="1.0.6"; sha256="1j499f94ibr9rx544mwbpwjrwhzbdlvv1p156kj8pfnd7qin26xl"; depends=[zoo xts TTR ggplot2 tseries MASS urca fArma]; }; @@ -3282,12 +3346,12 @@ emdatr = derive { name="emdatr"; version="0.3"; sha256="1ccm45al90wa467n19dqs33q emdbook = derive { name="emdbook"; version="1.3.8"; sha256="10qmppacfww8wg1hhd9fpadrvrivrvfgfn1qgm87xlf3a8jpffjj"; depends=[MASS lattice plyr rgl coda bbmle]; }; emdist = derive { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; emg = derive { name="emg"; version="1.0.6"; sha256="1kzmxs224m6scmk8gg5ckx5c7is99hwgwv28yl26hnrbkm59skyh"; depends=[]; }; -emil = derive { name="emil"; version="1.1-6"; sha256="1qk655swpl8f492y9smzlfxf7aysbwashfs6whnsi7f9dbigw6cd"; depends=[]; }; +emil = derive { name="emil"; version="2.0.2"; sha256="16fkf5ns6pw0nrpysr1yy5hwwg59mkfa84skajchfvq75aw6hwbi"; depends=[dplyr data_table ggplot2 lazyeval magrittr tidyr]; }; emma = derive { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[earth clusterSim]; }; emme2 = derive { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; emoa = derive { name="emoa"; version="0.5-0"; sha256="1wcnsnkdmpcn21dyql5dmj728n794bmfr6g9hgh9apzbhn4cri8p"; depends=[]; }; emov = derive { name="emov"; version="0.1"; sha256="1jzssxk7c26ylfb70p9s631bz63fgvrqc105p7536n0kgxy21f7b"; depends=[]; }; -empiricalFDR_DESeq2 = derive { name="empiricalFDR.DESeq2"; version="1.0.1"; sha256="12w3ald2ngaj01rm98k445ai3xl3ggr58y27mfxzlsg697yrx83c"; depends=[]; }; +empiricalFDR_DESeq2 = derive { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[]; }; emplik = derive { name="emplik"; version="1.0-1"; sha256="1kwgikdnxh52wsmzrzqv7sp8s55w9q40aq9kpfd3zshkflx7w8g1"; depends=[quantreg]; }; emplik2 = derive { name="emplik2"; version="1.20"; sha256="0qdsfmnvds01qa4f112knv905k0fzccrqj9fwaqrqcy48cigm8pd"; depends=[]; }; emulator = derive { name="emulator"; version="1.2-15"; sha256="1rp7q7zs8b49jzdkbzm4s1g8554h41hcabf4d78k9jhhys2z28g2"; depends=[mvtnorm]; }; @@ -3300,18 +3364,17 @@ english = derive { name="english"; version="1.0-1"; sha256="1413axjp2icj9wwnkz3v enigma = derive { name="enigma"; version="0.1.1"; sha256="1309w9nwh7kd1iivj5kq6sgi10k9ac69n3yl6a52ajqnm9rsg3lm"; depends=[httr jsonlite plyr]; }; enpls = derive { name="enpls"; version="1.0"; sha256="1grnabrb0kzjvjvwp9rx1xqfljla0jd5xrkcbwfzmy2ymmbvh6ma"; depends=[pls foreach doParallel]; }; enrichvs = derive { name="enrichvs"; version="0.0.5"; sha256="0x91s03hz1yprddm6mqi75bm45ki3yapfrxmap7d4qc0hi06h22k"; depends=[]; }; -ensembleBMA = derive { name="ensembleBMA"; version="5.1.1"; sha256="1apzfapzycpjhdn4f2cj77rifc9xrxshq35b1j53rb6qqns7ydyz"; depends=[chron]; }; +ensembleBMA = derive { name="ensembleBMA"; version="5.1.2"; sha256="0cfasrs1paz60na8by9zk0c5jc48l9djvn6c64ygjl1rapz389d4"; depends=[chron]; }; ensembleMOS = derive { name="ensembleMOS"; version="0.7"; sha256="0g5qzdic5jvgn6wv7zh0jnz8malfgfxn26l7lg30y96vcmi4hk54"; depends=[ensembleBMA chron]; }; ensurer = derive { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; entropart = derive { name="entropart"; version="1.2.1"; sha256="14cn0zkfk6w8qrbzis9nxhs0vmhpxn4ksa95j5zxr7lxn77piznz"; depends=[ade4]; }; entropy = derive { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; -enviPat = derive { name="enviPat"; version="1.9"; sha256="0xm23gv4ixmsal9rf0cbq0lwvlpagpmapskz3c4d8qzvhr8qrl3b"; depends=[]; }; +enviPat = derive { name="enviPat"; version="2.0"; sha256="10fzzwlcmrfcppsj06pma8jkp5pfrb2ys70ggb9q4frc5irg5lha"; depends=[]; }; enviPick = derive { name="enviPick"; version="1.3"; sha256="01wkijvhr8wqjzrhgkvxbnnmb9qsnq0lhkgw93s8nrf8yr3z3awj"; depends=[shiny readMzXmlData]; }; epade = derive { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; epi2loc = derive { name="epi2loc"; version="1.0-1"; sha256="16abk1v177sg7gmaw42ldf6hf20l7dvyq295zwbq76nxj467khdv"; depends=[pwr]; }; epiR = derive { name="epiR"; version="0.9-62"; sha256="04r0inaa04pc4nj5dippl2qxa4nysk0sabdgp4bzp5zxw33mf55v"; depends=[survival]; }; epibasix = derive { name="epibasix"; version="1.3"; sha256="0d0087sa8lqw35pn7gdg2qqzw3dvz57sgavymwl1ybcj5d4lsbyk"; depends=[]; }; -epicalc = derive { name="epicalc"; version="2.15.1.0"; sha256="11x9q990hc7rf5xfvba47axdy7vld76xcf3kd9lkr0c8nbl5ss9v"; depends=[foreign survival MASS nnet]; }; epinet = derive { name="epinet"; version="2.0.9"; sha256="071svl1zcjjb3gvk3vg8xf660bvlz0ypkxy88n3d3f3ir2k26s7b"; depends=[]; }; episensr = derive { name="episensr"; version="0.6.0"; sha256="005cxrwszgqar52zdrliwgg0p8j7rh2msvjd4s028z8ns334zwsb"; depends=[triangle trapezoid]; }; episplineDensity = derive { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; @@ -3327,16 +3390,16 @@ erboost = derive { name="erboost"; version="1.2"; sha256="0afgh0zkl3h3ab4s7wl0cn erer = derive { name="erer"; version="2.3"; sha256="165hngfzbzn403gwdcjkhvlm7jygl57nbpwdmlya2rd43z09kp77"; depends=[lmtest systemfit tseries urca ggplot2]; }; ergm = derive { name="ergm"; version="3.2.4"; sha256="004d3wrv271i0czqkp7abz9lba8g68z350b21f94ad0xfp0cwlp2"; depends=[statnet_common network robustbase coda trust Matrix Rglpk]; }; ergm_count = derive { name="ergm.count"; version="3.1.1"; sha256="0l66shy5p7h9j3h5gpkn48ps069mdaqbscnnkvmwjfvcc7k5vr8m"; depends=[statnet_common ergm network ergm]; }; -ergm_graphlets = derive { name="ergm.graphlets"; version="1.0.2"; sha256="1wfk8kh4rqw1f7dg4vsjq8nirgwyyk21r0x7x2hrd4v4ci0mcz6j"; depends=[statnet ergm]; }; +ergm_graphlets = derive { name="ergm.graphlets"; version="1.0.3"; sha256="0xk45ialjckvjs96k19skk7imilcahgyzfwc74h6yand5q3mg6fz"; depends=[network ergm statnet_common ergm]; }; ergm_userterms = derive { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[network ergm statnet_common ergm]; }; ergmharris = derive { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; erpR = derive { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; }; -esaBcv = derive { name="esaBcv"; version="1.1.1"; sha256="0bsdxd0spfpzkaxyv1qh5n3x31qr75wgb1lizifl5j9mfi4ks7h1"; depends=[corpcor svd]; }; +esaBcv = derive { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; esotericR = derive { name="esotericR"; version="1.0"; sha256="0kl9c2z2mpg3mk8jnl0ssgcf6y0i9jpczms746j8f07ydrcxpf41"; depends=[]; }; estimability = derive { name="estimability"; version="1.1"; sha256="1inw2ir83bzz40gynwfcjzx7f6v99pqlphq7p3rmql01ikd2b6r9"; depends=[]; }; estout = derive { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; etable = derive { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[xtable Hmisc]; }; -etasFLP = derive { name="etasFLP"; version="1.2.1"; sha256="1jkkpzvnkf3n3jalqj90brk5n4r4znc521kgx13n45y9j8b6ni50"; depends=[mapdata rgl fields maps]; }; +etasFLP = derive { name="etasFLP"; version="1.3.0"; sha256="1qh8s9ikd2lpchpp4h9z4zvcd9l2gi15dg0i54nxg9acn92yn3hi"; depends=[mapdata rgl fields maps]; }; etm = derive { name="etm"; version="0.6-2"; sha256="0sdsm6h502bkrxc9admshkrkqjczivh3av55sha7542pr6nhl085"; depends=[survival lattice]; }; eulerian = derive { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[]; }; eurostat = derive { name="eurostat"; version="1.0.16"; sha256="017ri3vvlp60r9h5b0y4j2adggkrkjbapkjynpl0vg92islspqkz"; depends=[plyr tidyr]; }; @@ -3347,9 +3410,10 @@ eventInterval = derive { name="eventInterval"; version="1.2"; sha256="15g934n7fl events = derive { name="events"; version="0.5"; sha256="1zka4ygymifs8snd7cabl11b5lg3f8g8370dkm9ybl40bn8vvqq2"; depends=[]; }; eventstudies = derive { name="eventstudies"; version="1.1"; sha256="13l2yhmlpiid9r3njnmvja231l00ym7gvwfbv0m9fk2k5j6gm5id"; depends=[zoo xts boot]; }; evir = derive { name="evir"; version="1.7-3"; sha256="1kn139vvzdrx5r9jayjb4b0803b0bbppxk68z00gdb50mxgvi593"; depends=[]; }; -evmix = derive { name="evmix"; version="2.5"; sha256="0v1raxxxj0qhampaia2q00asprl7ra7vk3s7vvcfpzmg4476vm50"; depends=[MASS gsl SparseM]; }; +evmix = derive { name="evmix"; version="2.6"; sha256="1rc52mqmzl05n5n1lr990czqgpq9h2x8shnv6s7hvr8896kjasjm"; depends=[MASS gsl SparseM]; }; evobiR = derive { name="evobiR"; version="1.0"; sha256="12j01qzc4yrjpxbj39bl29f5ypxwk33c6qf0mjjbgpwn5g6fgsi4"; depends=[seqinr ape stringr geiger taxize]; }; -evolvability = derive { name="evolvability"; version="1.0"; sha256="17vkmb5208q4lx6jslx96nbhsl9m2c4ra6264bparbgrg34byg9x"; depends=[coda]; }; +evolqg = derive { name="evolqg"; version="0.1-5"; sha256="1s9jh14ycymlajc285cczr9m529vv6la4bkv0lgk3dc0557m7q5w"; depends=[plyr Rcpp reshape2 ggplot2 magrittr tidyr vegan ape phytools mvtnorm Rcpp]; }; +evolvability = derive { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; }; evora = derive { name="evora"; version="1.0"; sha256="0blq28ldynbq3v6rh0yk89wy1sjp4621h6iwnyyiipqwzihwrhz2"; depends=[Hmisc]; }; evt0 = derive { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; evtree = derive { name="evtree"; version="1.0-0"; sha256="0i37lkdfzvgby98888ndd5wzxs7y11sxf9mh6pqpqgwif05p4z3i"; depends=[partykit]; }; @@ -3425,10 +3489,10 @@ faraway = derive { name="faraway"; version="1.0.6"; sha256="10vj38chfnlz595pdi16 farsi = derive { name="farsi"; version="1.0"; sha256="0y14f86bccwjirdx33383wa605y7l7lr0w7ygvg8r7f7izkv7r3n"; depends=[]; }; fast = derive { name="fast"; version="0.63"; sha256="00ag9d0dwn9al104y93m8dclbjqabr9liif8gr19v3gv6k2k6p2c"; depends=[zoo]; }; fastGHQuad = derive { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp Rcpp]; }; -fastHICA = derive { name="fastHICA"; version="1.0"; sha256="02lqqni7j2sp3ndb3kq785d7jf08p2s3ch30di8ffhwn57indald"; depends=[fastICA energy]; }; +fastHICA = derive { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[fastICA energy]; }; fastICA = derive { name="fastICA"; version="1.2-0"; sha256="0ykk78fsk5da2g16i4wji85bvji7nayjvkfp07hyaxq9d15jmf0r"; depends=[]; }; fastM = derive { name="fastM"; version="0.0-2"; sha256="0q5dz47sqj6d4r3k6l6q34l5ajb8fjbf7xam75scp0mg3czswnfn"; depends=[Rcpp Rcpp RcppArmadillo]; }; -fastR = derive { name="fastR"; version="0.8-1"; sha256="08p03i72zn0cbwjsxpnsknk0148dx3pfwkw740x7f52c3jgbb1gi"; depends=[mosaic lattice mosaicData]; }; +fastR = derive { name="fastR"; version="0.10"; sha256="0bd164lij12yfqjykxj1m4rma7x2y4kpv4fspjlp1vpwqn3h4lb9"; depends=[mosaic lattice mosaicData]; }; fastSOM = derive { name="fastSOM"; version="0.9"; sha256="03501d5289lrlr4qcgxciz160hqc6nhqb9ab266fr132fkbiv4id"; depends=[]; }; fastclime = derive { name="fastclime"; version="1.2.5"; sha256="12k7bkq4gkkyh8lr2whmi73mzcy7wmfzwgi20kli7r4g39n3a1kv"; depends=[lattice igraph MASS Matrix]; }; fastcluster = derive { name="fastcluster"; version="1.1.16"; sha256="0x2prrsnqi5iqx23ki6y2agndjq8058ph6s703i4avrqi1q1w1q8"; depends=[]; }; @@ -3438,14 +3502,14 @@ fastpseudo = derive { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j fat2Lpoly = derive { name="fat2Lpoly"; version="1.1.1"; sha256="0xgxlx9m6lgcn784892g2xvnabyq8k45wi3xrszrbdxxa7zqd1i4"; depends=[kinship2 multgee]; }; fbRanks = derive { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; }; fbati = derive { name="fbati"; version="1.0-1"; sha256="1ia67dg9b61kc14mjg7065v0c6n6agdp8cjdviasyzga00wzsyxj"; depends=[pbatR fgui rootSolve]; }; -fbroc = derive { name="fbroc"; version="0.1.0"; sha256="1zpg796day8qlvah3d4qy8118knxx7vfa3gf50jcsv97b8r15dmz"; depends=[ggplot2 Rcpp Rcpp]; }; +fbroc = derive { name="fbroc"; version="0.2.1"; sha256="06qpdnh86klkbwiv593l57wnbamrmcj5ysabyrbjf9mr8mjzhkkj"; depends=[ggplot2 Rcpp Rcpp]; }; fcd = derive { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[glmnet MASS combinat]; }; -fclust = derive { name="fclust"; version="1.1"; sha256="1nimfgirpcff5dqqx2jqn25ma9j0agffimymrv9x5ivfdncdflbg"; depends=[]; }; +fclust = derive { name="fclust"; version="1.1.1"; sha256="0gxgyvz6nzqp5sdjhfdjmm3r4lf1b4min3s5rfddwdqiswzxg8m8"; depends=[]; }; fcros = derive { name="fcros"; version="1.3"; sha256="1ylkma69gfc5ij3vvf1axyasya31qm5bwj2bjlvj12byf52wsiy8"; depends=[]; }; fda = derive { name="fda"; version="2.4.4"; sha256="05rvrp29ip1wrk2wly06wdry2a2riynkx677nx5lg240lz12d6yw"; depends=[Matrix]; }; fda_usc = derive { name="fda.usc"; version="1.2.1"; sha256="1w0dw06vgviia4yy2v5mrq0jvnfvdp7y8f2x246v3xliqgjmg7as"; depends=[fda MASS mgcv rpart]; }; fdaMixed = derive { name="fdaMixed"; version="0.4"; sha256="15m13v71kqxd9gqiymgfkq0dvcpzp05576m8zkg08m0k067ga9bd"; depends=[Formula Rcpp Rcpp RcppArmadillo]; }; -fdakma = derive { name="fdakma"; version="1.2"; sha256="17nbaal3m2rz423fq34fia8pb75dzdzsj5d8w6g2iwckqbapszn0"; depends=[]; }; +fdakma = derive { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; fdasrvf = derive { name="fdasrvf"; version="1.4.2"; sha256="12x04fi0sxs9yh1mf9iykk69zlz6m31j7s01in28p5hgk6wqf8fi"; depends=[foreach mvtnorm matrixcalc numDeriv]; }; fdatest = derive { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; fdrDiscreteNull = derive { name="fdrDiscreteNull"; version="1.0"; sha256="1388a9hjbgblmhx5f3ddk16kigzsik9bvw179d1szk33kadfq2vp"; depends=[MCMCpack]; }; @@ -3457,8 +3521,9 @@ feature = derive { name="feature"; version="1.2.11"; sha256="0dgiv9gwyklnw8w0cpc features = derive { name="features"; version="2011.8-2"; sha256="0yshwqv2mzl5jj323jwxscpz2ygb4ywxh6q0zwphb24bhv7h9lwd"; depends=[lokern]; }; fechner = derive { name="fechner"; version="1.0-2"; sha256="0yhiqr0wlka3wq0nhwy9n02ax3x5b0y803iadbsr3xb54pxbfbqd"; depends=[]; }; federalregister = derive { name="federalregister"; version="0.1.2"; sha256="0f73jhzhqi3a97iyfx5c5i09vxwnyypgw6668z7nch8lvq337s8x"; depends=[RCurl RJSONIO]; }; +fermicatsR = derive { name="fermicatsR"; version="1.3"; sha256="0vv3i1f01rjsd17a8z2wcf3iv6xlwg7fki99z3p5h8m4g6jwljfk"; depends=[]; }; ff = derive { name="ff"; version="2.2-13"; sha256="1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"; depends=[bit]; }; -ffbase = derive { name="ffbase"; version="0.11.3"; sha256="0n65i2a91jjjpzfw3placf6j6sbf8azzd1sck4adha6iiwpi8b1n"; depends=[ff bit fastmatch]; }; +ffbase = derive { name="ffbase"; version="0.12.1"; sha256="1qgmk1cn8s89amfmzzr2zhg6w4wwn4k79i92ib15j02i4csvykjj"; depends=[ff fastmatch bit]; }; ffmanova = derive { name="ffmanova"; version="0.2-2"; sha256="0sw8br73mx552m4b5zi4qgjcrwxflmgsnvs4mlnxh8g2gaf5bx4j"; depends=[]; }; fftw = derive { name="fftw"; version="1.0-3"; sha256="01nncrf2p0yq49lhd5aq4hvhp87f25r0x7siqnaldv5zq24krl30"; depends=[]; }; fftwtools = derive { name="fftwtools"; version="0.9-7"; sha256="1pd6ri9qh8rj5dahznl38l6haa1x6f2w91mxi83lic76lpddnxly"; depends=[]; }; @@ -3478,18 +3543,19 @@ fingerprint = derive { name="fingerprint"; version="3.5.2"; sha256="042aycxs00rg finiteruinprob = derive { name="finiteruinprob"; version="0.4"; sha256="0wcllbqkryll3v3fjb6k210pcgkskzrpa78gg8nda0jvkij11zb7"; depends=[sdprisk numDeriv]; }; fishMod = derive { name="fishMod"; version="0.25"; sha256="0mg1bziz2ia406m4ilc7hw1bghrgdibm537hnlf9ffhfayjc4kid"; depends=[]; }; fisheyeR = derive { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; }; -fishmethods = derive { name="fishmethods"; version="1.7-0"; sha256="0kgfv78f8a460nfvpfrrqfiy3ipbl3775axydal3vm1zf4l6k2z3"; depends=[MASS boot bootstrap]; }; +fishmethods = derive { name="fishmethods"; version="1.8-0"; sha256="1n5wwwnggflq2y7j3m3kf324mwdhf45ihi25gbqyv79qklg5xcai"; depends=[MASS boot bootstrap]; }; fishmove = derive { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[ggplot2 plyr MASS boot]; }; fit_models = derive { name="fit.models"; version="0.5-10"; sha256="06pj26dbnq6mf9wxinvjzwyn36656f66a4bmky36r7fzi92gf3d8"; depends=[lattice]; }; fit4NM = derive { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[gWidgets tkrplot RGtk2 gWidgetsRGtk2 cairoDevice]; }; fitDRC = derive { name="fitDRC"; version="1.1"; sha256="1f6avw8ia9ks17zdagpmh6yvcmi53h5cvm0wwv9hsb92x5zfhxn9"; depends=[]; }; fitTetra = derive { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; -fitbitScraper = derive { name="fitbitScraper"; version="0.1.2"; sha256="10qm5j4g0vs7yg5nchwza73dpr7w3zqrkffpyl60ginvl0qlqj9j"; depends=[httr stringr RJSONIO]; }; +fitbitScraper = derive { name="fitbitScraper"; version="0.1.3"; sha256="0fh8qm4ws9idx0868rda7v1cs8g61q8zdx1ncyxijbvijhdslfgj"; depends=[httr stringr RJSONIO]; }; fitdistrplus = derive { name="fitdistrplus"; version="1.0-4"; sha256="02ds5vmxc3rk50c33rxdnpqf2hbx186ss6br29n6538q7734nra9"; depends=[survival]; }; flam = derive { name="flam"; version="1.0"; sha256="0jyx0wff5zdpnhgxz74k6fxgwdnl7khanahv63af22y0mqpd066f"; depends=[MASS]; }; flare = derive { name="flare"; version="1.5.0"; sha256="03bq40lwwq49vvbarf37y7c3smm29mxqfxsc66gkg8l5pak4l38i"; depends=[lattice MASS Matrix igraph]; }; flashClust = derive { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; flexCWM = derive { name="flexCWM"; version="1.5"; sha256="1q6nkw6al56wc53sj719c94iv20a9a82pq4s62jnb2flq1pwdaml"; depends=[numDeriv mnormt mclust ellipse mixture Flury adehabitat MASS statmod]; }; +flexPM = derive { name="flexPM"; version="1.0"; sha256="0zchcqsjinf3fpw5ijnygh1ywn2fdj9a6rgv7vfb44dcjgy4k74f"; depends=[]; }; flexclust = derive { name="flexclust"; version="1.3-4"; sha256="1x9gyg69kb3wn02w885kl6hcwpf2ki66gzfayvc83jisrwxvdfvv"; depends=[lattice modeltools]; }; flexmix = derive { name="flexmix"; version="2.3-13"; sha256="1i205yw3kkxs27gqcs6zx0c2mh16p332a2p06wq6fdzb20bazg3z"; depends=[lattice modeltools nnet]; }; flexsurv = derive { name="flexsurv"; version="0.6"; sha256="10y6v1m8w5h92y37pi26xqsb4l6wk6dz43593dngpfr9ww1j4aaa"; depends=[survival muhaz mvtnorm deSolve]; }; @@ -3497,7 +3563,6 @@ flip = derive { name="flip"; version="2.4.3"; sha256="04zf2gnk5w57gxnlnh26pn1ir1 flora = derive { name="flora"; version="0.2.4"; sha256="1rdwdx7mphfr7sk3yba0vhbsh3xggz2k6ip8dmfiqjjhv2vxji5k"; depends=[shiny]; }; flower = derive { name="flower"; version="1.0"; sha256="1h2fvpjrvpbyrqb8hd51sslr1ibpwa7h9fiqy9anvf2yim5j11yq"; depends=[]; }; flowfield = derive { name="flowfield"; version="1.0"; sha256="1cx3i0w3xq781mmms4x20fshlf1i9bwxw9bxx562crix3fq3m50j"; depends=[]; }; -flowr = derive { name="flowr"; version="0.9.6.5"; sha256="0nb715cgq9zgr7vr094q6y1j4dq77ckldn0f203jr368b9wqbqkh"; depends=[diagram knitr ggplot2 RSQLite reshape2]; }; flsa = derive { name="flsa"; version="1.05"; sha256="07z2b1pnpnimgbzkjgjl2b074pl9mml7nac2p8qvdgv7aj070cmh"; depends=[]; }; flux = derive { name="flux"; version="0.3-0"; sha256="0pc9cab2pwrfl0fnz29wp7a398r49hvbi50jp8i2fk2rfvck21a7"; depends=[caTools]; }; fma = derive { name="fma"; version="2.01"; sha256="1j5mvhbrdnkyj4svibpahnz7d4221nkhja5b7fnh68mbmil607fc"; depends=[tseries forecast]; }; @@ -3510,17 +3575,18 @@ foodweb = derive { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28 forams = derive { name="forams"; version="2.0-4"; sha256="1kvxlqdyzb3rqa45hp7jxjm009w0r6h78nr3yh9bqcz594zqidbq"; depends=[vegan]; }; foreach = derive { name="foreach"; version="1.4.2"; sha256="097zk7cwyjxgw2i8i547y437y0gg2fmyc5g4i8bbkn99004qzzfl"; depends=[codetools iterators]; }; forecTheta = derive { name="forecTheta"; version="1.0"; sha256="1ip6l27d37xqnmg8w285lq1y5j6akrjrviq4338c8sq075d8hckn"; depends=[forecast]; }; -forecast = derive { name="forecast"; version="6.0"; sha256="13pim2jz14jy9czjjaliv8x86iqcdaglzvdl9dz3xjj47c5nhhac"; depends=[zoo timeDate tseries fracdiff Rcpp nnet colorspace Rcpp RcppArmadillo]; }; +forecast = derive { name="forecast"; version="6.1"; sha256="1hwv3arcpkkhpj5n2dvpw2fyx687b6x6yakxx55cw9rrka70rx1k"; depends=[zoo timeDate tseries fracdiff Rcpp nnet colorspace Rcpp RcppArmadillo]; }; foreign = derive { name="foreign"; version="0.8-63"; sha256="1g5hl8drcmh2c9kpkr4443nw7dsxjwqsqs1q4bnhvw2lizs8bfb2"; depends=[]; }; forensic = derive { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[genetics combinat]; }; forensim = derive { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; +forestFloor = derive { name="forestFloor"; version="1.4"; sha256="152b5pq9901bdik3dqmn4gb0aiyl8zf8mg88d8xnz839aildp2fw"; depends=[Rcpp randomForest rgl kknn trimTrees Rcpp]; }; forestplot = derive { name="forestplot"; version="1.1"; sha256="1h28lwqdizs450bm5hb8zfbmx633n8v5bj2p8mi4cl814sjjylr0"; depends=[]; }; formatR = derive { name="formatR"; version="1.2"; sha256="0dlj728qdm7wmxcxvw1ip64pl4ajgmi8ax69zafrn3306pg9y136"; depends=[]; }; -formula_tools = derive { name="formula.tools"; version="1.3.4"; sha256="1xxl45x88fpskwvfj6sbcbfng84plpf8sjrkwawzki9a41ydhwaq"; depends=[operator_tools]; }; +formula_tools = derive { name="formula.tools"; version="1.5.2"; sha256="1n2rw9zhrgcsjxrm108fs7sysk9jk1gmq0jmg9s7pm7ff76insnj"; depends=[operator_tools]; }; fortunes = derive { name="fortunes"; version="1.5-2"; sha256="1wv1x055v388ay4gnd1l8y6dgvamyfvmsd0ik9fziygwsaljb049"; depends=[]; }; forward = derive { name="forward"; version="1.0.3"; sha256="0swn5ysp3f660kl9jpmkck9324j1g3yhj2hl238rfrcr5wihxifc"; depends=[MASS]; }; fossil = derive { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[sp maps shapefiles]; }; -fpCompare = derive { name="fpCompare"; version="0.1.0"; sha256="1b5jbw6rlrx3qdn0mcga4n4505jqqr2pbz77x0vxcyn35qv9d9ql"; depends=[]; }; +fpCompare = derive { name="fpCompare"; version="0.2.0"; sha256="0s8gfnyj6kjwy3ymiy232bb5wzgkd1ainaqzlki7mcafa3dyzq0a"; depends=[]; }; fpc = derive { name="fpc"; version="2.1-9"; sha256="01x7zcsbz9n10dxx8plb37c7z7pfz1xd5dvfrij3na327mny3pxs"; depends=[MASS cluster mclust flexmix prabclus class diptest mvtnorm robustbase kernlab trimcluster]; }; fpca = derive { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; fpow = derive { name="fpow"; version="0.0-2"; sha256="0am3nczimcfrm9hi02vl2xxsh703qjmr2j11y014mll3f2v1l8cy"; depends=[]; }; @@ -3534,7 +3600,7 @@ fractalrock = derive { name="fractalrock"; version="1.1.0"; sha256="15f4w8hq3d8k frailtyHL = derive { name="frailtyHL"; version="1.1"; sha256="1xjdph0ixanf9w4b6hx6igfhkcp8h93sclrg0pgqgmbvm41lhb1x"; depends=[Matrix numDeriv survival]; }; frailtypack = derive { name="frailtypack"; version="2.7.5"; sha256="1wjb8l6aj1lsmbgczfag8a96r0z235yj315kr7dpkqkninn2bqwk"; depends=[survival boot MASS survC1]; }; frair = derive { name="frair"; version="0.4"; sha256="1g52ykj1m9znpp0pvry7dnmhg4m73nbkw0bp31zl6pcsdgmxxqjr"; depends=[bbmle emdbook boot]; }; -frbs = derive { name="frbs"; version="3.0-0"; sha256="0v2l8s5jla8jsl9izqfpxhcd1dnrxsa0czlhq1wmx5k06jvbvpdw"; depends=[]; }; +frbs = derive { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; }; freeknotsplines = derive { name="freeknotsplines"; version="1.0"; sha256="19zs42q9njknirdbrbnp8bv4vr32kd8wxmkqj0a0nh06i5fcx67r"; depends=[]; }; freestats = derive { name="freestats"; version="0.0.3"; sha256="0b18n8idap089gkmjknzzb94dvs2drpdqs0mrw7dqnacxgbbqwfj"; depends=[MASS mvtnorm]; }; freqMAP = derive { name="freqMAP"; version="0.2"; sha256="02hpkqqrxifrr1cxn5brp166jwa8lgl1mcgmq7s8csrbbd900ziv"; depends=[]; }; @@ -3549,7 +3615,7 @@ frontiles = derive { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34w frt = derive { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; }; fscaret = derive { name="fscaret"; version="0.9.4"; sha256="0cna1cixq021lka7c8jgfqr6h8vvyvylckkbfay10ng7cxpqa44c"; depends=[caret gsubfn hmeasure]; }; fsia = derive { name="fsia"; version="1.0"; sha256="0qa4avd1xiwh1ih1cj067r7vipab2ngspq7hfd0xbapwx87fggrg"; depends=[]; }; -fslr = derive { name="fslr"; version="1.3"; sha256="0668fpr3avqhyq42an9la71ln40kfjnf108nmkrwndvwl864i99w"; depends=[stringr oro_nifti matrixStats]; }; +fslr = derive { name="fslr"; version="1.4.4"; sha256="0k6973hd1q54q6243lir4xi3wlrsiqb526qsh9gryx9ha4iv0rmc"; depends=[stringr oro_nifti matrixStats R_utils scales]; }; fso = derive { name="fso"; version="2.0-1"; sha256="02dr12bssiwn8s1aa1941hfpa4007gd65f3l4s74gs2vgjzdxf8s"; depends=[labdsv rgl]; }; ftnonpar = derive { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; fts = derive { name="fts"; version="0.9.9"; sha256="1qgp8xdwr5pp2b7nd8r717a6p8b6izwqrindx2d1d0lhhnqlcwhv"; depends=[zoo BH]; }; @@ -3561,7 +3627,7 @@ funFEM = derive { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl funHDDC = derive { name="funHDDC"; version="1.0"; sha256="038m64yv27wz7ki2gcn94q011p8mv0ggmli5n27y0f5bnkfh6d6w"; depends=[fda]; }; functional = derive { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; funreg = derive { name="funreg"; version="1.1"; sha256="1sxr4mylcpbya197d55yi6d7g5pfspaf59xxbwjgmwgjw06rl76r"; depends=[MASS mgcv mvtnorm]; }; -funtimes = derive { name="funtimes"; version="1.0"; sha256="0jdl09x0fvfz08xyg1yfyhn0lgg8ycqbli4ag9js0yva8pwab7lh"; depends=[Jmisc]; }; +funtimes = derive { name="funtimes"; version="1.1"; sha256="0z478b57l7hg8b42jyzcdjzs3nn62m2y117xmgbw1gbyf3rcnjkw"; depends=[Jmisc]; }; futile_any = derive { name="futile.any"; version="1.3.0"; sha256="1c7pj64kz09qzwrxvkp1w1w8mvxwq36zkj6w4b7yyi8v7x3daq2a"; depends=[lambda_r]; }; futile_logger = derive { name="futile.logger"; version="1.4.1"; sha256="1plld1icxrcay7llplbd4i8inpg97crpnczk58mbk26j8glqbr51"; depends=[lambda_r futile_options]; }; futile_matrix = derive { name="futile.matrix"; version="1.2.2"; sha256="1cb975n93ck5fma0gvvbzainp7hv3nr8fc6b3qi8gnxy0d2i029m"; depends=[lambda_r lambda_tools futile_logger RMTstat]; }; @@ -3578,7 +3644,7 @@ g_data = derive { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydl gCat = derive { name="gCat"; version="0.1"; sha256="10990ilsjk52kqkcdngj4nq0kcbn4w1syxl1mqjq2n5g1l002yjy"; depends=[]; }; gIPFrm = derive { name="gIPFrm"; version="2.0"; sha256="1syjsnna7b7y27yf7zsxjwq8z5f4wxf2hfadhgjaw898gvfcnrbc"; depends=[]; }; gMCP = derive { name="gMCP"; version="0.8-8"; sha256="0568pqvcbrpqbppvpvmgxf23rzy1fgl892asq9lhcjslzsz89an5"; depends=[rJava JavaGD xlsxjars MASS PolynomF multcomp mvtnorm Matrix CommonJavaJars]; }; -gMWT = derive { name="gMWT"; version="0.9"; sha256="0c91bwwfm0qyqrrd3n9g6l8kackqm58hmamypn1awzpz1p13axyv"; depends=[clinfun Rcpp RcppArmadillo Rcpp RcppArmadillo]; }; +gMWT = derive { name="gMWT"; version="1.0"; sha256="12ryjpq0k3brw4xy4f6j89zm94j6phbzn9ga0nr9bzfvslhqjhna"; depends=[clinfun Rcpp Rcpp RcppArmadillo]; }; gPCA = derive { name="gPCA"; version="1.0"; sha256="1ylb1d24dxnzpws9bbanwhyizjr3ljky2bhrph4c5yaq0zwwbrkw"; depends=[]; }; gPdtest = derive { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; }; gProfileR = derive { name="gProfileR"; version="0.5.3"; sha256="0kv01b1ihwggzjd9plznz3il3b97pja11nqki3378zvpgfy5wzdn"; depends=[RCurl plyr]; }; @@ -3597,7 +3663,7 @@ gWidgetsRGtk2 = derive { name="gWidgetsRGtk2"; version="0.0-83"; sha256="1kn2095 gWidgetstcltk = derive { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[gWidgets digest]; }; gains = derive { name="gains"; version="1.1"; sha256="1mn8db8yxgkf8z6nm6k76g5l3i3vnw750ksg3w9ysd2pcabb65g1"; depends=[]; }; galts = derive { name="galts"; version="1.3"; sha256="0b18hsdcsx43rn8l4x9nhy9hgggjr5b8kvjnbxrf6r23qsdk43mn"; depends=[genalg DEoptim]; }; -gam = derive { name="gam"; version="1.09.1"; sha256="09p83ki821x57kc74klh6i1h8bz3acsrvibz3mzzcgq6sa8gzr5i"; depends=[]; }; +gam = derive { name="gam"; version="1.12"; sha256="00rx8y7pcxabwjvg0ch6c76xqs43drjg3ih3kflqxdcl2rmaapnd"; depends=[foreach]; }; gamair = derive { name="gamair"; version="0.0-8"; sha256="11qwmhrzks8gi9is2n9xcy6cviy7a8mwh2v78fw78x7g7ccd8i9x"; depends=[]; }; gambin = derive { name="gambin"; version="1.1"; sha256="197k8j6mvf8236gwg8vvfnskf4hic9y075chsd8214n1nk7i6jmz"; depends=[]; }; gamboostLSS = derive { name="gamboostLSS"; version="1.1-3"; sha256="1gdsrizr4q5zyfs2g8c8fdwriqz0xrpq9vyy4wd2ywdh5lbi995b"; depends=[mboost]; }; @@ -3619,7 +3685,7 @@ gamlss_util = derive { name="gamlss.util"; version="4.3-2"; sha256="13facgyd14jl gamm4 = derive { name="gamm4"; version="0.2-3"; sha256="19vy5wik9nh77cm25gp3j3j8w8vinwzx5pv90nzdzvx84yvvf0y3"; depends=[Matrix lme4 mgcv]; }; gammSlice = derive { name="gammSlice"; version="1.3"; sha256="1vw8d0v0awyflh4gmbcf1g9nfx52cys8gpqvag5djri59p0y945a"; depends=[KernSmooth lattice mgcv]; }; gaoptim = derive { name="gaoptim"; version="1.1"; sha256="04igpn73k6f6652y496igwypfxmz4igg4jgxx6swqyi37182rqhm"; depends=[]; }; -gap = derive { name="gap"; version="1.1-12"; sha256="1760jwfrlfmb8crk8kba0swpazcznlv80c6j8fiyd9zxjhnq7zf5"; depends=[]; }; +gap = derive { name="gap"; version="1.1-16"; sha256="0xyln7ffapm31cvx4n86ncyg3cdz5d2149qb5h5xx3kf0a8r7gpz"; depends=[]; }; gapmap = derive { name="gapmap"; version="0.0.2"; sha256="0xykpy3cmbiwwa3s8f4777585r7l441qb9ks6ajym01scqcj3nwl"; depends=[ggplot2 reshape2]; }; gapminder = derive { name="gapminder"; version="0.1.0"; sha256="06hi4m9i86nkdyz7w9wa4qkpbsl2178qskzzy8168wlzayx820ad"; depends=[]; }; gaselect = derive { name="gaselect"; version="1.0.5"; sha256="0xzx00n46x6x7w1xbx8nvabkkrna45pv1i70787m8h05q1yrjjij"; depends=[Rcpp Rcpp RcppArmadillo]; }; @@ -3634,7 +3700,7 @@ gbs = derive { name="gbs"; version="1.0"; sha256="19zcsvd258ibrj356zlwgryjqylcs5 gcbd = derive { name="gcbd"; version="0.2.5"; sha256="0fkg6vk0jkl6680n1hljyv783j4hd84mql0k4pfblvqafwv4nhm3"; depends=[RSQLite plyr reshape lattice]; }; gcdnet = derive { name="gcdnet"; version="1.0.4"; sha256="0fmy0li06rahch4ir0xa81yilvrd0zqyhmpl4hfxjahhl3npw370"; depends=[Matrix]; }; gclus = derive { name="gclus"; version="1.3.1"; sha256="02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"; depends=[cluster]; }; -gcmr = derive { name="gcmr"; version="0.7.0"; sha256="17wv1qgshakn390719r8zzd8fbbvnkfjhlbcwk2rd2pic05x8msm"; depends=[nlme sandwich geoR betareg Formula car sp]; }; +gcmr = derive { name="gcmr"; version="0.7.5"; sha256="1z1hdgdasmw3drld8nmkw6cc1xls1gaaym1mlr8lyida4gb3giv8"; depends=[betareg car Formula geoR lmtest nlme sandwich sp]; }; gconcord = derive { name="gconcord"; version="0.41"; sha256="1n3pfwk6vip19q1zhbz1n164f9vi7mig8pcd07c4wxnm5ir9dagy"; depends=[]; }; gcookbook = derive { name="gcookbook"; version="1.0"; sha256="0hb52zfi5bl2j0h8lazz4gzhhcvpicb4ld6xm2vkvi4cj47piyy8"; depends=[]; }; gdalUtils = derive { name="gdalUtils"; version="0.3.1"; sha256="1a6sg3x5yfffa9xrkvc98i2hm3lvna4jw7p89gn2bf74kzphqpmy"; depends=[sp foreach R_utils]; }; @@ -3643,12 +3709,12 @@ gdimap = derive { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd0 gdistance = derive { name="gdistance"; version="1.1-7"; sha256="1wcpjx76pnkpc6kmqx7bq73qbvzfzjb9s46qb7gi7kabpkya97il"; depends=[raster igraph Matrix sp]; }; gdm = derive { name="gdm"; version="1.0"; sha256="08wafxvds4sxaxv7mbbkbzilkpfz1xnzdc5jdw3pldvmbgk861vd"; depends=[Rcpp raster reshape2 vegan plyr Rcpp]; }; gee = derive { name="gee"; version="4.13-18"; sha256="1s2cjgg4ypw72g710m93g6az763xz6sxw91nd6cwm5jjvr9vb91f"; depends=[]; }; -geeM = derive { name="geeM"; version="0.7.3"; sha256="15qbfki7ds75ws0ymwncr0y26ddnky5a882d7vh04145s1prl6xw"; depends=[Matrix]; }; +geeM = derive { name="geeM"; version="0.7.4"; sha256="0vxgwx6qx2xhhj217d6x7m5y89r0b9xxdd4k3sw0zgfga133ij7w"; depends=[Matrix]; }; geepack = derive { name="geepack"; version="1.2-0"; sha256="1pxh9nsyj9a40znm4zza4nbi3dkhb96s3azi43p9ivvfj3l21m74"; depends=[]; }; -geesmv = derive { name="geesmv"; version="1.0"; sha256="1xxsiz6rwqxx113vmlddx89g190nmv1yaimmibz8ai0sam5hqnp9"; depends=[nlme gee matrixcalc MASS]; }; +geesmv = derive { name="geesmv"; version="1.1"; sha256="1xijdjmkg6nw2y1556zbaic969dg23np0wrb9ncknsrhq4aa28pa"; depends=[nlme gee matrixcalc MASS]; }; geigen = derive { name="geigen"; version="1.5"; sha256="06k4fc7j8asqv1winmz28hb3r8fvlgikrvi064ysvj2fqwh7jnq1"; depends=[]; }; geiger = derive { name="geiger"; version="2.0.3"; sha256="1wqihvscmq44i34205fzv79wk7j2a72qd8y6ycgrv74plql0316c"; depends=[ape MASS mvtnorm subplex deSolve digest Rcpp coda Rcpp]; }; -gelnet = derive { name="gelnet"; version="1.0"; sha256="06cyd5g5yxmyqiqjvp02f2k2ha50sk8qjqmmwcfxhaxysk9vbaag"; depends=[]; }; +gelnet = derive { name="gelnet"; version="1.1"; sha256="1d77v44azqpk6hzi7fl2ba6z3nyzh33xn0yp7ydp86nmf1gcgwlh"; depends=[]; }; gems = derive { name="gems"; version="1.0.0"; sha256="0h8z3ih24hxdv8bah4xf8f797pnwihby8hj93z6zw5sq9dyszxwa"; depends=[MASS msm plyr data_table]; }; gemtc = derive { name="gemtc"; version="0.6-2"; sha256="0bkcbyh71aq3p7w75w78l472gfschfb2qf9wcv7s2vyy6ypbvh2q"; depends=[coda igraph meta XML plyr]; }; gemtc_jar = derive { name="gemtc.jar"; version="0.14.3"; sha256="18hbiygpsv67flc4v6z6mir0rfq41v1vsh11dg9phmdr8bx4kcl1"; depends=[rJava]; }; @@ -3677,11 +3743,11 @@ geocodeHERE = derive { name="geocodeHERE"; version="0.1.2"; sha256="0sr8r6f41bpi geojsonio = derive { name="geojsonio"; version="0.1.0"; sha256="17nv7xn80sf2nn6fvmlbnbcgg66n6bh8x725wdfnhk3gg1rb64g5"; depends=[sp rgdal rgeos httr maptools jsonlite magrittr V8]; }; geomapdata = derive { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geometry = derive { name="geometry"; version="0.3-5"; sha256="1x1dhdbqnq1wi1r4njj3l1g8yag2dig19rna3a5pwf1j1gxbl0i8"; depends=[magic]; }; -geomorph = derive { name="geomorph"; version="2.1.4"; sha256="19zf9g0lpkrdl3pkkjryzas42h3ng9q01ap182xxd36vr8p55sd8"; depends=[rgl jpeg ape geiger phytools]; }; +geomorph = derive { name="geomorph"; version="2.1.5"; sha256="0xys2gwin16h4ahcjy3m49sslypilxlcgrnky19vv4aagrydq776"; depends=[rgl jpeg ape geiger phytools]; }; geonames = derive { name="geonames"; version="0.998"; sha256="1p0x260i383ddr2fwv54pxpqz9vy6vdr0lrn1xj7178vxic1dwyy"; depends=[rjson]; }; geophys = derive { name="geophys"; version="1.3-8"; sha256="0nw4m30r46892cf1n575jkfjgdjc14wic9xzmzcnskbk8cd50hp2"; depends=[RPMG RSEIS RFOC GEOmap cluster]; }; georob = derive { name="georob"; version="0.1-5"; sha256="0awcqcpv82pn2z7lgir73pg2b0whvrrfy55gi0jrjn7lzyakhqaq"; depends=[sp constrainedKriging lmtest nlme nleqslv quantreg RandomFields robustbase snowfall]; }; -geoscale = derive { name="geoscale"; version="1.1"; sha256="1xmn8y33jz1f16sjbzrld20gy7w54awrr79lhs9s4r8k1gmn0zqg"; depends=[]; }; +geoscale = derive { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; geospacom = derive { name="geospacom"; version="0.5-7"; sha256="00yi2wwnjh2z8xhzfbp1jhh5fhq2z885s0gv937xsin4a63m76fd"; depends=[rgeos classInt sp maptools geosphere]; }; geosphere = derive { name="geosphere"; version="1.3-13"; sha256="124l1mfqf4qq5qsa0k3r5hkky9q2m2waq2rp4xcym49wr3jysf6c"; depends=[sp]; }; geospt = derive { name="geospt"; version="1.0-1"; sha256="1nv5wn8s4vlbyyzi8is7zsa1vrijp1va0vhi8l2yny8fh22qhjij"; depends=[gstat genalg MASS sp minqa limSolve fields gsl plyr TeachingDemos sgeostat]; }; @@ -3693,7 +3759,7 @@ getopt = derive { name="getopt"; version="1.20.0"; sha256="00f57vgnzmg7cz80rjmjz gets = derive { name="gets"; version="0.2"; sha256="0vdg8g588asyzkld9v3rmscx3k727ncxnjzi8qxinlr2zhw9nbcq"; depends=[zoo]; }; gettingtothebottom = derive { name="gettingtothebottom"; version="3.2"; sha256="1cz2vidh7k346qc38wszs2dg6lvya249hvcsn6zdpbx0c0qs3y72"; depends=[ggplot2 Matrix]; }; gfcanalysis = derive { name="gfcanalysis"; version="1.2"; sha256="147vgv4z14xn0j94g7z0y099gz8xj2yb02r6j3mfi4412dg5f5fp"; depends=[raster rgdal geosphere RCurl rgeos plyr ggplot2 sp stringr animation rasterVis]; }; -ggExtra = derive { name="ggExtra"; version="0.1.0"; sha256="12b2bd8n3hyp5azdxh14dslq6mwaplvxph90dhiydkhzmya27i7i"; depends=[ggplot2]; }; +ggExtra = derive { name="ggExtra"; version="0.1.5.2"; sha256="0lad58245x5gn1yqx65rqpbjwy17yrisns6lqnaw5w1ff5bh7s9i"; depends=[ggplot2]; }; ggROC = derive { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; }; ggRandomForests = derive { name="ggRandomForests"; version="1.1.4"; sha256="0h55593mr2x0kvp97rrm1spj17zbr1p9pqrpngsxmp11iahhccqh"; depends=[randomForestSRC ggplot2 survival reshape2]; }; ggdendro = derive { name="ggdendro"; version="0.1-15"; sha256="1xa1pswkf7xnrxs1zqw71ws0r6r0nmc2gnc76bd372czfdn4npci"; depends=[MASS ggplot2]; }; @@ -3708,7 +3774,7 @@ ggsubplot = derive { name="ggsubplot"; version="0.3.2"; sha256="1rrq47rf95hnwz8c ggswissmaps = derive { name="ggswissmaps"; version="0.0.2"; sha256="1cl8m9j3d2kf8dbpq09q36v7nwkgz7khqds431l0kmkzq02qhddf"; depends=[ggplot2]; }; ggtern = derive { name="ggtern"; version="1.0.5.0"; sha256="0ykgz3268381glkrv1gbn9qnyrkxsmihc3srv8zrldbq18zbr0a8"; depends=[ggplot2 plyr gtable scales reshape2 proto MASS sp]; }; ggthemes = derive { name="ggthemes"; version="2.1.2"; sha256="049fjk0f960sjsnqns2kgk7dvr6jr5rrpxgl8qbxx4idz95bvdi7"; depends=[ggplot2 colorspace proto scales]; }; -ggvis = derive { name="ggvis"; version="0.4.1"; sha256="1sl6ygglgsg7xhzzkxaap8pzb2zmfw0y481w7r7s1nyg7pdgr0r2"; depends=[assertthat jsonlite shiny magrittr dplyr lazyeval htmltools]; }; +ggvis = derive { name="ggvis"; version="0.4.2"; sha256="07arzhczvh2sgqv9h30n32s6l2a3rc98rid2fpz6kp7vlin2pk1g"; depends=[assertthat jsonlite shiny magrittr dplyr lazyeval htmltools]; }; ghyp = derive { name="ghyp"; version="1.5.6"; sha256="0y3915jxb2rf01f7r6111p88ijhmzyz4qsmy7vfijlilkz0ynn20"; depends=[numDeriv gplots]; }; giRaph = derive { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; }; gibbs_met = derive { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; @@ -3745,13 +3811,14 @@ glmx = derive { name="glmx"; version="0.1-0"; sha256="0i0p1xk5yk1l274gfr4ijmqnnb globalGSA = derive { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; globalOptTests = derive { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; globalboosttest = derive { name="globalboosttest"; version="1.1-0"; sha256="1k7kgnday27sn6s1agzlj94asww81655d2zprx6qg7liv677bxvf"; depends=[mboost survival]; }; +globals = derive { name="globals"; version="0.3.1"; sha256="1fjbs75m07r8gvj5pjqj8dv1xm558h4g2cpg5l1psqzs567gkcxv"; depends=[codetools]; }; glogis = derive { name="glogis"; version="1.0-0"; sha256="19h0d3x5lcjipkdvx4ppq5lyj2xzizayidx0gjg9ggb1qljpyw9m"; depends=[zoo sandwich]; }; glpkAPI = derive { name="glpkAPI"; version="1.3.0"; sha256="0173wljx13jali2jxz4k5za89hc64n2j9djz5bcryrqhq4rmkp87"; depends=[]; }; glrt = derive { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; gmailr = derive { name="gmailr"; version="0.6.0"; sha256="1l0lnlq5vrxrab8d9b5hwm8krg8zgx8f8m0kfnryyyrqkjrksky5"; depends=[httr base64enc magrittr jsonlite mime]; }; gmatrix = derive { name="gmatrix"; version="0.2"; sha256="1w83m6q8xflifqqgkkg2my4fkjfjyv0qq4ly8yqk12k77lb03hxq"; depends=[]; }; gmm = derive { name="gmm"; version="1.5-2"; sha256="1phd8mmfyhjb72a45gavckb3g8qi927hdq0i8c7iw1d28f04lc70"; depends=[sandwich]; }; -gmnl = derive { name="gmnl"; version="1.0"; sha256="1nvk6x5412bfqdg54051hnisbnfm3d4yv9l2568jcz49pa8lay4d"; depends=[maxLik Formula plotrix msm mlogit truncnorm]; }; +gmnl = derive { name="gmnl"; version="1.1"; sha256="1dz7fhacys88hpf13pbqc9ba37qhwspq7j5zqfy1bg4py1hsx1q7"; depends=[maxLik Formula plotrix msm mlogit truncnorm]; }; gmodels = derive { name="gmodels"; version="2.15.4.1"; sha256="1yizjw181bg0ml6j96calflz3k3wpvpxh61hfd3pdba013ixjib5"; depends=[MASS gdata]; }; gmp = derive { name="gmp"; version="0.5-12"; sha256="10fpvcli526a8j6jaryn0mwk78c24xy7whdpcvqzzvb41l6nnkma"; depends=[]; }; gmt = derive { name="gmt"; version="1.2-0"; sha256="09az2iwwhyrls4mr619vwzhzmaks6klm67lnir48bh40hynsvibp"; depends=[]; }; @@ -3785,6 +3852,7 @@ graphicalVAR = derive { name="graphicalVAR"; version="0.1.2"; sha256="0vc2x58z4w graphicsQC = derive { name="graphicsQC"; version="1.0-6"; sha256="07kzz0r8rh4m7qqxnlab0d4prr56jz5kspx782byspkcm5l4xrsl"; depends=[XML]; }; graphscan = derive { name="graphscan"; version="1.0"; sha256="15kdpp2k2gpfr8qq6wr08gva5hlxqha2h48zi1j3p6r766j07082"; depends=[ape sp snowfall rgl]; }; greport = derive { name="greport"; version="0.5-3"; sha256="0cd7rqzrk1yb22ksbmva1fl9k388bxxm586c20j8k8z5zympi9g1"; depends=[Hmisc data_table rms lattice latticeExtra ggplot2 Formula survival]; }; +greyzoneSurv = derive { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[survival Hmisc survAUC]; }; gridBase = derive { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridDebug = derive { name="gridDebug"; version="0.4-0"; sha256="1nbcdjip6ghnlv0j7cf45bpqdpirwn636pg324f0hgiqj4rifn09"; depends=[gridGraphviz gridSVG]; }; gridExtra = derive { name="gridExtra"; version="0.9.1"; sha256="15pj5w5wlrf8gw4z01i9j88gk6bm4kni64fpip9icmxkn887y3hx"; depends=[]; }; @@ -3794,6 +3862,7 @@ gridSVG = derive { name="gridSVG"; version="1.4-3"; sha256="1jgrhckjbvccp5zqbkki grnn = derive { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; }; groc = derive { name="groc"; version="1.0.5"; sha256="1kqcdyq1y80gd62jpn38yz6q1qmg84b7k8qcniip5h948vfzkddg"; depends=[rrcov pls mgcv robust robustbase MASS]; }; grofit = derive { name="grofit"; version="1.1.1-1"; sha256="1rnym5fxbg3bin2idmymrwvf1fcd646bipbgjd6wby8my69zy4c5"; depends=[]; }; +gromovlab = derive { name="gromovlab"; version="0.6-16"; sha256="0ndi4i91fnndvpp3xmr405a62vq5gjagw2qrvcmq1q6cgg7bj17q"; depends=[igraph phangorn glpkAPI quadprog cluster]; }; groupRemMap = derive { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; grouped = derive { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; growcurves = derive { name="growcurves"; version="0.2.3.9"; sha256="1f8hh8ppp6bgrb8crm46xrria3vdnz62aya9lhwcdaggfmy7j25l"; depends=[Rcpp RcppArmadillo reshape2 scales ggplot2 Formula testthat Rcpp RcppArmadillo]; }; @@ -3802,7 +3871,7 @@ growthmodels = derive { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819 growthrate = derive { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[Matrix clime mvtnorm]; }; grplasso = derive { name="grplasso"; version="0.4-5"; sha256="15bqckq9qjdlllhfpb21vzgi9msbl544alkrz01w1vvb3hk1847y"; depends=[]; }; grppenalty = derive { name="grppenalty"; version="2.1-0"; sha256="12hbghmg96dwlscjy6nspgkmqqj4vwq2qcwcz1gp50a08qbmdcrk"; depends=[]; }; -grpreg = derive { name="grpreg"; version="2.8-0"; sha256="1mfd3hzzv720zhl8s6ghw0vfpqkz8q050dwnvmmb0smhdvahd2zj"; depends=[Matrix]; }; +grpreg = derive { name="grpreg"; version="2.8-1"; sha256="0n6j4mx2f0khdqz7c7yhmsh6gcxha2ypknqa421qir1nvp0x57c9"; depends=[Matrix]; }; grt = derive { name="grt"; version="0.2"; sha256="0cqjk7yqk2ryx1pgvjd3x8l25hqv92p8rvdr7xw4jkzillllwmhz"; depends=[MASS rgl misc3d]; }; gsDesign = derive { name="gsDesign"; version="2.9-3"; sha256="0dd96hciiksf436lpm1q35in06b82p4h09spklf28n0p5hgc9225"; depends=[ggplot2 xtable stringr RUnit plyr]; }; gsalib = derive { name="gsalib"; version="2.1"; sha256="1k3zjdydzb0dfh1ihih08d4cw6rdamgb97cdqna9mf0qdjc3pcp1"; depends=[]; }; @@ -3816,14 +3885,13 @@ gsl = derive { name="gsl"; version="1.9-10"; sha256="06n21p0k2ki6nb725a6sxwlb4p7 gsmoothr = derive { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; gss = derive { name="gss"; version="2.1-4"; sha256="0vmyz3q7b2chzmvrwx6bk2yj5kmaxym6lznyrddxgf7xzjipvlii"; depends=[]; }; gsscopu = derive { name="gsscopu"; version="0.9-2"; sha256="0hg2ry9rhnn51g368fg1zxswx826y3m0yn2wjb2g5rw4a4zn1frr"; depends=[gss]; }; -gstat = derive { name="gstat"; version="1.0-22"; sha256="1jbjl2irg0a2jdxwk7nr3c33jf3dzbcydpxxjmld23zzx94qy1iv"; depends=[lattice sp zoo spacetime FNN]; }; -gstudio = derive { name="gstudio"; version="1.3"; sha256="1ddifizswm41y4sxnnfw8j90clba6zf022x0z4xipccaznim2gy9"; depends=[ggplot2 raster sp reshape2 ggmap popgraph]; }; +gstat = derive { name="gstat"; version="1.0-23"; sha256="0as4afwlwzmi37k8sbm0kssin8mikrny88smb71c0wf616yba4xi"; depends=[lattice sp zoo spacetime FNN]; }; gsubfn = derive { name="gsubfn"; version="0.6-6"; sha256="196x4c3ihf4q3i0v7b1xa6jm8jjld2rsx00qz03n90wfnjdx5idv"; depends=[proto]; }; gsw = derive { name="gsw"; version="1.0-3"; sha256="0ca3h567r23bdldic7labk1vbz8hhslw568lacbdcikm8q16hk72"; depends=[]; }; gtable = derive { name="gtable"; version="0.1.2"; sha256="0k9hfj6r5y238gqh92s3cbdn34biczx3zfh79ix5xq0c5vkai2xh"; depends=[]; }; gtcorr = derive { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; -gtools = derive { name="gtools"; version="3.4.2"; sha256="1s0vfi07gxaqvllidsws4f9admvc61sw19g2hvffa74sccqiwr6a"; depends=[]; }; +gtools = derive { name="gtools"; version="3.5.0"; sha256="1xknwk9xlsj027pg0nwiizigcrsc84hdrig0jn0cgcyxj8dabdl6"; depends=[]; }; gtop = derive { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts quadprog lassoshooting]; }; gtx = derive { name="gtx"; version="0.0.8"; sha256="0x71jji2yldi9wpx8d3nldbjfj4930j7zcasayzbylf9094gmg26"; depends=[survival]; }; gumbel = derive { name="gumbel"; version="1.05"; sha256="0d7isx7bhvryhaa25kxb4fm58ph81xaqscj19aaqzs8yg79ac2ar"; depends=[]; }; @@ -3870,7 +3938,7 @@ heavy = derive { name="heavy"; version="0.2-35"; sha256="04aw0r2hgnxf9nsd18q2b5d helloJavaWorld = derive { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; helsinki = derive { name="helsinki"; version="0.9.27"; sha256="1vhzlxjkk2hgzjlin9ksvjk3bi2ly5nm4361777m49lb84ncs7dr"; depends=[maptools RCurl rjson sp]; }; heplots = derive { name="heplots"; version="1.0-15"; sha256="0sl5pqc57lhhh8s8hym0l874saq974hms6vsq7ll6g60rifx4lbq"; depends=[car MASS]; }; -hergm = derive { name="hergm"; version="2.2-1"; sha256="0pii3dgpjgh4s5a1cjj0nyw3p8g0b7f0hhfbfc9mwr5mz84yidlh"; depends=[ergm latentnet network sna]; }; +hergm = derive { name="hergm"; version="2.2-2"; sha256="0jshhf57kybrayk94vv7p1sjvhlfcdya6jllaj9kgn46kkvci54p"; depends=[ergm latentnet network sna]; }; heritability = derive { name="heritability"; version="1.1"; sha256="05vcprf3rk65197njnhw7n5l19hvy7hfp4fdigkwzvch4rnicidf"; depends=[MASS]; }; hermite = derive { name="hermite"; version="1.1.0"; sha256="184f7iixsmpli5hp4f0frjxfwpxpicjn1yrk6sf8y4il49cx0s4v"; depends=[maxLik]; }; het_test = derive { name="het.test"; version="0.1"; sha256="08kxp81dx32anh0k5b65x7w7madwnn9hiabdrk6ck6b6mx37x26v"; depends=[vars]; }; @@ -3880,7 +3948,7 @@ hexbin = derive { name="hexbin"; version="1.27.0"; sha256="0fs5nsaalic6fj7b347yj hflights = derive { name="hflights"; version="0.1"; sha256="1rb6finck13i6949i6hsgfk90q4ybxh1m3is2mlw2m6087bpzfbd"; depends=[]; }; hgam = derive { name="hgam"; version="0.1-2"; sha256="1flcc67n8kbh9m5phdfl587xg1x935zbp305y0gdmkc8vpkiwpcf"; depends=[grplasso lattice rgl]; }; hglasso = derive { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[glasso mvtnorm igraph fields]; }; -hglm = derive { name="hglm"; version="2.0-11"; sha256="0yqnky2p5avxn7nv8wnk57xkd0dpk89jas6d577q50ms4dpwdl6z"; depends=[Matrix MASS hglm_data]; }; +hglm = derive { name="hglm"; version="2.1-0"; sha256="02d5m7j7c1z40kih1ywvnd32sdlshgsgagsbh9avhhpcg7lxswj9"; depends=[Matrix MASS hglm_data]; }; hglm_data = derive { name="hglm.data"; version="1.0-0"; sha256="1hrq1jac658z5xjsg03nfkb4kwm9z44bhciv5chk74ww8gjr9j9q"; depends=[Matrix MASS]; }; hgm = derive { name="hgm"; version="1.11"; sha256="1p6391bcvsgf2mvkdrwc3fj3h6hkzshqmzb6f31kmpiihjwv3392"; depends=[deSolve]; }; hht = derive { name="hht"; version="2.1.2"; sha256="10lpndwpddcqxyrk9pq9dwaqpj4apxdic971nd68cn3pql6fssdn"; depends=[EMD fields spatstat]; }; @@ -3924,15 +3992,15 @@ hpcwld = derive { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgz hpoPlot = derive { name="hpoPlot"; version="2.0"; sha256="080jzi1zw510clbbkmf2wkwbfgna06kfz91i7d90b9pqi7krj28j"; depends=[functional magrittr]; }; hqmisc = derive { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; }; hrr = derive { name="hrr"; version="1.1.1"; sha256="17jzsgh2784y7jdwpa50v7qz99dw6k2n25sisnam6h1a39b96byn"; depends=[]; }; -hsdar = derive { name="hsdar"; version="0.1.3"; sha256="0vwiavzzfxz81iskgjy0af8gwh8fkjiyzhql82s2n9snvy7d36fk"; depends=[sp raster rgdal rootSolve signal]; }; +hsdar = derive { name="hsdar"; version="0.1.5"; sha256="1ii83dpndshq8d00f3dxrzcxqplcc5b85b9cixxbda5bpvrlkpg1"; depends=[sp raster rgdal rootSolve signal]; }; hsicCCA = derive { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; hsmm = derive { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; hsphase = derive { name="hsphase"; version="2.0.1"; sha256="1z7yxbknldxn780dxw9xz984b3i8pj5hmdnbynvxc5k0ss8g7isy"; depends=[snowfall Rcpp RcppArmadillo Rcpp]; }; htmlTable = derive { name="htmlTable"; version="1.3"; sha256="00zcismapanyb68657gng5l6g3hsmpls84naracshj4gfk2l1cfs"; depends=[stringr knitr magrittr]; }; htmltools = derive { name="htmltools"; version="0.2.6"; sha256="1gp6f6388xy3cvnb08q08vraidjp740gfxlafdd19m2s04v5hncz"; depends=[digest]; }; -htmlwidgets = derive { name="htmlwidgets"; version="0.3.2"; sha256="1r0n3c2xvj9k7x892nbqyclpc66lq5wyxc2y0nybs5wcz3jx9s2p"; depends=[htmltools RJSONIO yaml]; }; +htmlwidgets = derive { name="htmlwidgets"; version="0.4"; sha256="079y3b3d4na582a1wmb5nc5cyrmmld4v7c1vc08cbfsg43w026zn"; depends=[htmltools jsonlite yaml]; }; hts = derive { name="hts"; version="4.4"; sha256="1dpm669lc4khjkcs49m1nh7i61sclsqy7xbcn4mqqjhfgs7sg7sk"; depends=[forecast SparseM]; }; -httk = derive { name="httk"; version="1.1"; sha256="198zxzap9m8c6rlzqjfrg6b9pvgbksk2myq5cw7j37j63lfnblki"; depends=[deSolve msm]; }; +httk = derive { name="httk"; version="1.2"; sha256="016njh1cm21bmdrn94cbsmf36gzcwfg21bqp8nl100qb16d6yqq6"; depends=[deSolve msm]; }; httpRequest = derive { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; httpuv = derive { name="httpuv"; version="1.3.2"; sha256="0vp3bz1nxi0ladlgi1r6wd480y0m2m0gsba2hrs73s9b8afrfh6v"; depends=[Rcpp Rcpp]; }; httr = derive { name="httr"; version="0.6.1"; sha256="111l6ygwnrzcqwny6ds62np0r2f6x0il7abapq00j1y86nk4p6l6"; depends=[digest jsonlite mime RCurl R6 stringr]; }; @@ -3942,7 +4010,7 @@ hwde = derive { name="hwde"; version="0.64"; sha256="1is39zknssqm98577sdjg8gn3h9 hwriter = derive { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; hwriterPlus = derive { name="hwriterPlus"; version="1.0-3"; sha256="1sk95qgpyxwk1cfkkp91qvn1iklad9glrnljdpidj20lnmpwyikx"; depends=[hwriter TeachingDemos]; }; hwwntest = derive { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; }; -hybridEnsemble = derive { name="hybridEnsemble"; version="0.1.1"; sha256="1hn6zfz22mgxv5qpwdgmn7a9snha7hdkbbqq3xicy37j8xypsab5"; depends=[kernelFactory ada rpart ROCR nnet e1071 NMOF GenSA Rmalschains pso AUC soma genalg reportr nnls quadprog tabuSearch glmnet]; }; +hybridEnsemble = derive { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[randomForest kernelFactory ada rpart ROCR nnet e1071 NMOF GenSA Rmalschains pso AUC soma genalg reportr nnls quadprog tabuSearch rotationForest FNN glmnet]; }; hybridHclust = derive { name="hybridHclust"; version="1.0-4"; sha256="1967p6crkrbnlfghd9x1alr2x57nqjl1zh58hhyshgla3xmdmhx5"; depends=[cluster]; }; hydroApps = derive { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; }; hydroGOF = derive { name="hydroGOF"; version="0.3-8"; sha256="1ljk2dk5ydsg7qdizyzkbw0b2zdhnb3x9h965d94ygzg8nw5kbak"; depends=[zoo hydroTSM xts]; }; @@ -3954,7 +4022,7 @@ hyperSpec = derive { name="hyperSpec"; version="0.98-20150304"; sha256="0fjww2h6 hyperdirichlet = derive { name="hyperdirichlet"; version="1.4-9"; sha256="03c2xgfhfbpn1za84ajhvm0i5cpmfnz1makidrr2222addgyp9zx"; depends=[aylmer abind mvtnorm cubature]; }; hypergea = derive { name="hypergea"; version="1.2.3"; sha256="13a8r7f2qq7wi0h7jrg29mn573njzi1rwna0ch9sj8sdy8w26r6w"; depends=[]; }; hypergeo = derive { name="hypergeo"; version="1.2-9"; sha256="0ydwza0h8ykzbrsvvp4wd5jiy05rx5bj93c7bplx68j3c68c9f1q"; depends=[elliptic contfrac]; }; -hypervolume = derive { name="hypervolume"; version="1.2.2"; sha256="1nc5hybw5aa5pdrf9j1jv6d69q1im7whz0d05rmyskcayy2x3pyi"; depends=[Rcpp rgl MASS geometry pdist Rcpp]; }; +hypervolume = derive { name="hypervolume"; version="1.3.0"; sha256="07pnbkdqm4jssv6h31q68mawckiyxczsjfw4gndpyvxnl44p0qrz"; depends=[Rcpp rgl MASS geometry ks fastcluster Rcpp RcppArmadillo]; }; hypothesestest = derive { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; hysteresis = derive { name="hysteresis"; version="2.5"; sha256="1b1dd2367pjbg4jnn65l2jcj38ljz7adpdg8f5b9rj1rw7qgikfl"; depends=[car msm MASS]; }; hzar = derive { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[MCMCpack foreach coda]; }; @@ -3974,7 +4042,7 @@ iWeigReg = derive { name="iWeigReg"; version="1.0"; sha256="09ajbqllr4ajmpk8qs6q ibd = derive { name="ibd"; version="1.2"; sha256="0681v7lgx697yj2d60cw3p5axbbaxanzj291vdf7ailn7300p1ms"; depends=[lpSolve MASS car lsmeans multcompView]; }; ibdreg = derive { name="ibdreg"; version="0.2.5"; sha256="1kaa5q1byi30wzr0mw4w2cv1ssxprzcwf91wrpqwkgcsdy7dkh2g"; depends=[]; }; ibeemd = derive { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[fields deldir rgeos sp spdep]; }; -ibelief = derive { name="ibelief"; version="1.0"; sha256="1mcmq1zpj1f6alhnsznb27iknp7dzdsd25di8a64hw5c3cnx3xay"; depends=[]; }; +ibelief = derive { name="ibelief"; version="1.1"; sha256="164cd68qq0z68n5j0b192krpk73y8cy15wr5wnb52rzxv5k7rfd4"; depends=[]; }; ibmdbR = derive { name="ibmdbR"; version="1.36.7"; sha256="0v6l8cm0sww2gm8yal4ffk2wcxfnvfsd76i92f2khank7bhga06r"; depends=[RODBC MASS]; }; ibr = derive { name="ibr"; version="1.4.5"; sha256="0nw2j232br06l30v3cn4qcr25vbh911v2mz7nfail40sqxc6wwc4"; depends=[]; }; ic_infer = derive { name="ic.infer"; version="1.1-5"; sha256="0nmx7ijczzvrv1j4321g5g5nawzll8srf302grc39npvv1q17jyz"; depends=[quadprog mvtnorm boot kappalab]; }; @@ -3985,13 +4053,15 @@ icamix = derive { name="icamix"; version="1.0.2"; sha256="0rpqx9q5p3nb5gd76zlkql icapca = derive { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; iccbeta = derive { name="iccbeta"; version="1.0"; sha256="0zsf2b5nrv39pssi5walf82892fr8p1f802c96hjjknh78q7gh0h"; depends=[lme4 Rcpp Rcpp RcppArmadillo]; }; icd9 = derive { name="icd9"; version="1.2"; sha256="0d0dgd5951chyfimzjb00cphdvqzml8p8wr7sad3qfhv44dsypn7"; depends=[Rcpp checkmate Rcpp]; }; -icenReg = derive { name="icenReg"; version="1.1.1"; sha256="0q1h94r6sv56jxrg1lxc8ms1drrcrqf7k888jb63qmg4wscp33bi"; depends=[survival foreach]; }; +icenReg = derive { name="icenReg"; version="1.2.4"; sha256="0fqwg1xmks9zkmbnr1dala4b13l85ibqfd96w4vvrfhmvakqra1r"; depends=[survival foreach]; }; icensmis = derive { name="icensmis"; version="1.2.1"; sha256="1h4l9irip4hv34hr92j8756qgmy455mfdblr7ypgsgvr27cgax8h"; depends=[Rcpp Rcpp]; }; idbg = derive { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; identity = derive { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; }; +idm = derive { name="idm"; version="1.0"; sha256="001zvhw38qgq1l66yxz5kchvjspijdvqwgrdvh5ykiqifi8kc5xm"; depends=[corpcor ggplot2 dummies animation ca]; }; idr = derive { name="idr"; version="1.2"; sha256="05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"; depends=[]; }; ieeeround = derive { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; ifa = derive { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; }; +ifctools = derive { name="ifctools"; version="0.3.1"; sha256="0lr1d4z2gzninqchfzmmmymd0ngywrjpbh7bvd6qgxkzabf9yxxx"; depends=[]; }; ifs = derive { name="ifs"; version="0.1.4"; sha256="0fzani8rnn4rdwlghq967hhi4zfjnk3gwpk3v6wys738xj7yfwp1"; depends=[]; }; ifultools = derive { name="ifultools"; version="2.0-1"; sha256="16lrmajyfa15akgjq71w9xlfsr4y9aqfw7y0jf6gydaz4y6jq9b9"; depends=[splus2R MASS]; }; ig_vancouver_2014_topcolour = derive { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; @@ -4015,19 +4085,21 @@ indicoio = derive { name="indicoio"; version="0.3"; sha256="04c2j4l103fiiibf83z7 indicspecies = derive { name="indicspecies"; version="1.7.5"; sha256="16m4pnfnmaskin4aaalm2cmv3vwzg94045max8nhkgw02kpskz1r"; depends=[permute]; }; ineq = derive { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; inference = derive { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; }; -inferference = derive { name="inferference"; version="0.4.61"; sha256="02rsirwh4arqkgxpw3vnd0m2k055ir2074mlz27gbzmwz0ycpfzk"; depends=[numDeriv lme4 Formula]; }; +inferference = derive { name="inferference"; version="0.4.62"; sha256="12iag6l2digxb056qc765xi27ayc4qyqdqzbhxscr8a5lxfkdn4p"; depends=[numDeriv lme4 Formula]; }; inflection = derive { name="inflection"; version="1.1"; sha256="1nb1pf07c371vwgplfyjs3q1iqgb5hyk9czxqrjiy18g8p7zdln2"; depends=[]; }; influence_ME = derive { name="influence.ME"; version="0.9-5"; sha256="0sjrajhc198g391xa78l4gicmpyq4h7dnrnncji3qpgbqi772pkn"; depends=[lme4 Matrix lattice]; }; -influence_SEM = derive { name="influence.SEM"; version="1.4"; sha256="1grsnp8xwmhh9qx0yc5fy8b3g4i4cfqbg6sfzbmn39si2z34wrxw"; depends=[lavaan]; }; +influence_SEM = derive { name="influence.SEM"; version="1.5"; sha256="0h920pxa3sk6y7ipkihxm78i06alm5rmlmn5pr937j7abgypkk3p"; depends=[lavaan]; }; infoDecompuTE = derive { name="infoDecompuTE"; version="0.5.1"; sha256="1aigd1fvpdqjplq1s1js0sy8px68q73lbp5q591rn52c77smdhaj"; depends=[MASS]; }; informR = derive { name="informR"; version="1.0-5"; sha256="16pz47wlr1gr8z5hdnrjpczm967khqiqgdfiw15a0bby6qdvni2y"; depends=[abind relevent]; }; infotheo = derive { name="infotheo"; version="1.2.0"; sha256="18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv"; depends=[]; }; infra = derive { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; }; +infuser = derive { name="infuser"; version="0.2"; sha256="1x585glkffw4kq8d13md4ksbrmqvp11pr05w5pp2z6rcxldaf5vd"; depends=[]; }; infutil = derive { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; }; inline = derive { name="inline"; version="0.3.14"; sha256="0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"; depends=[]; }; inlinedocs = derive { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; }; insideRODE = derive { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve nlme lattice]; }; insol = derive { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; }; +install_load = derive { name="install.load"; version="1.0.3"; sha256="0fvync9v712r4l6053bncl8a0rgjq0nfnrnpc0yxc2m3mxf5hzvr"; depends=[]; }; insuranceData = derive { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; intReg = derive { name="intReg"; version="0.2-8"; sha256="0cqf6lbn8aiyj5j7gg1qz80i477bfxbmxp7fjs25ish4bcdsbjja"; depends=[miscTools maxLik sets]; }; intRegGOF = derive { name="intRegGOF"; version="0.85-1"; sha256="0fyvhl6jmi6krfbimsq61dhixlz9h9jxk4yjvwbx2vl8d9fnnr54"; depends=[]; }; @@ -4094,13 +4166,13 @@ ivprobit = derive { name="ivprobit"; version="1.0"; sha256="1kijq7k6iv2ybaxb08kq jSonarR = derive { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[RCurl jsonlite]; }; jaatha = derive { name="jaatha"; version="2.7.0"; sha256="1ibk84x38j03hbdrf9pi0bi025fxlk2ysqxmfrqiqr4zq2rzhbvp"; depends=[phyclust Rcpp reshape2 Rcpp]; }; jackstraw = derive { name="jackstraw"; version="1.0"; sha256="1irfzivy7c9fb2pr98flx05s5hkk6sid1hkd5b3k9m9mgs6ixbfy"; depends=[corpcor]; }; -jagsUI = derive { name="jagsUI"; version="1.3.1"; sha256="18g755dxmlwv5abjdv3sip5qxpd13sx79f85wb0ji5i4fjax26ky"; depends=[lattice rjags coda]; }; +jagsUI = derive { name="jagsUI"; version="1.3.7"; sha256="1zdrqxzjip4lgf99b4z76gvlhbmh0gcbkpghrlrj3j25wqzgn5y0"; depends=[lattice rjags coda]; }; james_analysis = derive { name="james.analysis"; version="1.0.0"; sha256="01nbwhph22nfl0biwcgvb1q76jp79qj7qfn2fxpyx2dkkhzxzrmv"; depends=[rjson naturalsort]; }; jiebaR = derive { name="jiebaR"; version="0.5"; sha256="1x41jqc1ai3v1fn9f65dk7k4g2llf3pk9z3bwqihb95qf80mhd4v"; depends=[jiebaRD Rcpp Rcpp]; }; jiebaRD = derive { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; jmetrik = derive { name="jmetrik"; version="1.0"; sha256="0xnbvby03fqbxgg0i0qxrrzjv98783n6d7c1fywj81x487qlj77j"; depends=[]; }; joineR = derive { name="joineR"; version="1.0-3"; sha256="0q98nswbxk5dz8sazzd66jhlg7hv5x7wyzcvjc6zkr6ffvrl8xj7"; depends=[nlme MASS boot survival lattice statmod gdata]; }; -joint_Cox = derive { name="joint.Cox"; version="1.0"; sha256="1460i8ydwd0ix3slm9bn8jca5b1vs0w2wwx1md4npbmf5ly5x42l"; depends=[]; }; +joint_Cox = derive { name="joint.Cox"; version="1.1"; sha256="1zkj9ynxq521s23dz93m63valjf4amm19dcmcm8844fvnzbr7z4h"; depends=[]; }; jointDiag = derive { name="jointDiag"; version="0.2"; sha256="0y1gzrc79vahfhn4jrj5xys8pmkzxj4by7361730gi347f0frs0a"; depends=[]; }; jointPm = derive { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; jomo = derive { name="jomo"; version="0.2-0"; sha256="09vccbvy9y5p5w049l2v5qr1xbs915sihpddnrrjr4cc1w17ifzs"; depends=[]; }; @@ -4118,11 +4190,13 @@ kedd = derive { name="kedd"; version="1.0.2"; sha256="11mfgjr1pl56y4rcychs8xjgaz kelvin = derive { name="kelvin"; version="1.2-2"; sha256="0fl2yxc0dpmkhq3f7711gd08i7jlzlfncin1d6q251dfnmwd7rzf"; depends=[Bessel]; }; kequate = derive { name="kequate"; version="1.4.0"; sha256="0vr45y4f6x3080pf3k53nifavf8mfhikz54nis66c53fs9rp0jwf"; depends=[ltm equateIRT]; }; kerdiest = derive { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[date chron evir]; }; -kernelFactory = derive { name="kernelFactory"; version="0.2.0"; sha256="1ihghqrrndgif6kh6n0f4g3bfy5miskn3mk5ynxfcnnrfvp9h3xj"; depends=[randomForest AUC genalg kernlab]; }; +kernelFactory = derive { name="kernelFactory"; version="0.2.2"; sha256="1ms6732s17vx120xr2l423qmj0h880r522zsgp474pq3fxc0mr48"; depends=[randomForest AUC genalg kernlab]; }; kernlab = derive { name="kernlab"; version="0.9-20"; sha256="0gwl3v8gxidzfmvwa2icqla8ypdgnmvcwxf54iwrvvy2csjx0w27"; depends=[]; }; +keypress = derive { name="keypress"; version="1.0.0"; sha256="16msbanmbv2kf09qvl8bd9rf1vr7xgcjzjhzngyfyxv90va3k86b"; depends=[]; }; kfigr = derive { name="kfigr"; version="1.1.0"; sha256="1mnnd603s741h1vp99q6d8lwvc46k9hmbhylng66wc7a5j6k8psz"; depends=[knitr]; }; kimisc = derive { name="kimisc"; version="0.2-1"; sha256="1nbhw1q0p87w4z326wj5b4k0xdv0ybkgcc59b3cqbqhrdx8zsvql"; depends=[plyr]; }; kin_cohort = derive { name="kin.cohort"; version="0.6"; sha256="13gnjk58m5kya9wj87klwm6h7cdqi61ba6y0cg9k1hgbc1ajy3s8"; depends=[survival]; }; +kineticF = derive { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm splancs sp plotrix MASS]; }; kinfit = derive { name="kinfit"; version="1.1.13"; sha256="1av33f4wns6qp79wyww70f7fsfybcqm83nby1ia65sjp2dz04dk1"; depends=[]; }; kinship2 = derive { name="kinship2"; version="1.6.0"; sha256="06f544yk61i1xq0rm0r5gpzwfl6rvzyg7gz8z86bjyxg0z44h3vy"; depends=[Matrix quadprog]; }; kintone = derive { name="kintone"; version="0.1.1"; sha256="13c82vkapks9j2crrb4awnhl60ld8b1r7xmy9yv4zzch868kcl5g"; depends=[RCurl rjson]; }; @@ -4136,11 +4210,11 @@ km_ci = derive { name="km.ci"; version="0.5-2"; sha256="1l6kw8jppaa1802yc5pbfwwg kmc = derive { name="kmc"; version="0.1-2"; sha256="16lv8wk24cp91qg5202zhfmdhg83qw8bwiycknaml5ki820ffdlx"; depends=[rootSolve emplik Rcpp Rcpp]; }; kmconfband = derive { name="kmconfband"; version="0.1"; sha256="10n5w8k57faqcclwshs4m66i2i5b70i6f3xq5nqlgsi2ldkysbc9"; depends=[survival]; }; kmi = derive { name="kmi"; version="0.5.1"; sha256="0519mi7kwrsfpili7y8nmyiky6qwf8xkd0n7cwj02c8d119bk9sa"; depends=[survival mitools]; }; -kml = derive { name="kml"; version="2.2"; sha256="1g8wgmvs31r3hp7y8n9pkxc9qy5fxvb3nicmzgacmghaiwbwc8g3"; depends=[clv longitudinalData]; }; -kml3d = derive { name="kml3d"; version="2.2"; sha256="1n94kfi49rgb9149bgc9043f0y5xpaclmfjr8fkwairqz5nnmgbv"; depends=[clv rgl misc3d longitudinalData kml]; }; +kml = derive { name="kml"; version="2.3.1"; sha256="1bnd8ssbhijxd9c9x7qn96jdkj1f1jnm46nw86164issxc6ypm5a"; depends=[clv longitudinalData]; }; +kml3d = derive { name="kml3d"; version="2.3"; sha256="0dlpxp8bbrwgblrl1hnc1ip592abc6sdcl87s4m6jwgfaxjcq7a8"; depends=[clv rgl misc3d longitudinalData kml]; }; kmlcov = derive { name="kmlcov"; version="1.0.1"; sha256="09s9ganfsnwp22msha78g6pjr45ppyfyqjf6ci64w3w15q5qlcd9"; depends=[]; }; kmodR = derive { name="kmodR"; version="0.1.0"; sha256="1y1pqrrralklflyb1dw8bslfcyqrw8ryijfbhkwba7ykpxcf9fda"; depends=[]; }; -knitcitations = derive { name="knitcitations"; version="1.0.5"; sha256="1a9lw9gdb31akdwiif5xzbs4s0s9xkhm3n735xnkiyc9n6afwzn3"; depends=[RefManageR digest httr]; }; +knitcitations = derive { name="knitcitations"; version="1.0.6"; sha256="18jfrzazbk8cy9i7qvmmrn8c5cmkxvmdd894jpvak2gplxvsdx91"; depends=[RefManageR digest httr]; }; knitr = derive { name="knitr"; version="1.10.5"; sha256="1qxpsnjwb4bdq44k3nglfrznpvqaqj18njx4imbpk3njzcjif7a7"; depends=[evaluate digest formatR highr markdown stringr yaml]; }; knitrBootstrap = derive { name="knitrBootstrap"; version="0.9.0"; sha256="1cw5dvhjiypk6847qypxphfl9an54qjvd6qv029znhwijsg56mmg"; depends=[knitr markdown]; }; knnGarden = derive { name="knnGarden"; version="1.0.1"; sha256="1gmhgr42l6pvc6pzlq5khrlh080795b0v1l5xf956g2ckgk5r8m1"; depends=[cluster]; }; @@ -4161,12 +4235,13 @@ kst = derive { name="kst"; version="0.2-1"; sha256="1wy9cvvln994qgr0p7qa9qs1jd7g ktsolve = derive { name="ktsolve"; version="1.1"; sha256="0b5myr093v3qaj9gzbw1w728i5ij418whxxpicj51w657dcy647k"; depends=[]; }; ktspair = derive { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[]; }; kulife = derive { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; }; -kyotil = derive { name="kyotil"; version="2015.2-27"; sha256="0xx54b332bfg0b69m80d2qafcy7bwc5b7paq3x02rkh6xllsnq4y"; depends=[]; }; +kwb_hantush = derive { name="kwb.hantush"; version="0.2.1"; sha256="0rjnhhzvjhhl0r2ixz9vkgnqkrnnk772253zy7xkpadj7ws69jsf"; depends=[lattice hydroGOF]; }; +kyotil = derive { name="kyotil"; version="2015.5-20"; sha256="08rpprs58c100x7sjxhvxm76msy888pvr1hy40k1b8gw0yw7fks7"; depends=[]; }; kza = derive { name="kza"; version="3.0.0"; sha256="0v811ln9vg7msvks9lpgmdi39p01342yi8fj180aclha3mfk6gfw"; depends=[polynom]; }; kzft = derive { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; }; kzs = derive { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; l2boost = derive { name="l2boost"; version="1.0"; sha256="1p0sbvlnax4ba4wjkh3r0bmjs601k590g7bdfk6wxvlj42jxcnkl"; depends=[MASS]; }; -laGP = derive { name="laGP"; version="1.1-3"; sha256="11blzdnil0nw3q5vf4y1rv7l4zxjx8ilynv9jpkm14azv5dsr8jw"; depends=[tgp]; }; +laGP = derive { name="laGP"; version="1.1-5"; sha256="15p958c95a68gr2xs8aw0l0sp0appv6islfbidlvxm8ph252hw6d"; depends=[tgp]; }; labdsv = derive { name="labdsv"; version="1.7-0"; sha256="1r5vbmdijcrw0n3phdmfv8wiy7s08pidvhac4pnsxfmf98f74jby"; depends=[mgcv MASS rgl cluster]; }; label_switching = derive { name="label.switching"; version="1.3"; sha256="05kbxvrp0lm5913lhy7pgxr9cq64sm5hiz6ydmmgfmbmfirrcqyx"; depends=[combinat lpSolve]; }; labeledLoop = derive { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; }; @@ -4177,8 +4252,9 @@ laeken = derive { name="laeken"; version="0.4.6"; sha256="1rhkv1kk508pwln1d325iq laercio = derive { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; }; lakemorpho = derive { name="lakemorpho"; version="1.0"; sha256="0kxd493cccs24qqyw58110d2v5w8560qfnbm6qz7aki0xa7kaqrg"; depends=[maptools rgdal raster rgeos sp geosphere]; }; laketemps = derive { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; +lamW = derive { name="lamW"; version="0.1-1"; sha256="1ndf3rkkp87pivhymyqa3n5ng5y1kaa79ay84p4yk4z4h2887nq3"; depends=[Rcpp Rcpp]; }; lambda_r = derive { name="lambda.r"; version="1.1.7"; sha256="1lxzrwyminc3dfb07pbn1rmj45kplxgsb17b06pzflj728knbqwa"; depends=[]; }; -lambda_tools = derive { name="lambda.tools"; version="1.0.6"; sha256="13yxrgsam47adv08zl01harjq37pccfsar105b6ccf2qv3lrkdk7"; depends=[lambda_r]; }; +lambda_tools = derive { name="lambda.tools"; version="1.0.7"; sha256="1hskmsd51lvfc634r6bb23vfz1vdkpbs9zac3a022cgqvhvnbmxb"; depends=[lambda_r]; }; landpred = derive { name="landpred"; version="1.0"; sha256="1bl17xkx18i8i7arccnjmxvhjn4yiy7w64hg4n0xmhk8pg0l3mrg"; depends=[survival]; }; landsat = derive { name="landsat"; version="1.0.8"; sha256="07zvj1yyryxk7rwgcrf1kl32p2karkkqz6xrnwy1096dg9iw2js7"; depends=[rgdal sp lmodel2 mgcv]; }; languageR = derive { name="languageR"; version="1.4.1"; sha256="0grkhdjz9dcrgq6qwv7wpwmckn3mfv022c5wrx29b1dxafd0qzm0"; depends=[]; }; @@ -4197,6 +4273,7 @@ lava = derive { name="lava"; version="1.4.0"; sha256="0zf62xk2j1gbwxqglq6lsxs3f7 lava_tobit = derive { name="lava.tobit"; version="0.4-7"; sha256="1da98d5pndlbbw37k64fmr2mi1hvkhjxsmm3y9p4b772pz9i1pvj"; depends=[lava mvtnorm survival]; }; lavaan = derive { name="lavaan"; version="0.5-18"; sha256="0ih5wvhmxln3w5h7q5w6gsmbs3w8118l9hc2afgsnzpg8a5jy1n3"; depends=[MASS mnormt pbivnorm quadprog]; }; lavaan_survey = derive { name="lavaan.survey"; version="1.1"; sha256="1vscv165kilkc00pgs2s9qn404l3rv45zc9kzmrghxz42jsy04zc"; depends=[lavaan survey MASS Matrix]; }; +lawn = derive { name="lawn"; version="0.1.0"; sha256="0vv2qmz6a692ammh3jxnpq3b669s8cx61krmb97jlwjy2nb6r81i"; depends=[V8 jsonlite magrittr]; }; lawstat = derive { name="lawstat"; version="2.5"; sha256="01y00jfapmh3bmrmz740flkahw0b8im8sp5ac8hsp4pf9k09cvws"; depends=[mvtnorm VGAM Kendall Hmisc]; }; lazy = derive { name="lazy"; version="1.2-15"; sha256="1pdqgvn0qpfg5hcg5159ccf5qj2nd1ibai9p85rwjpddfynk6jks"; depends=[]; }; lazyData = derive { name="lazyData"; version="1.0.3"; sha256="1i4jry54id8hhfla77pwk3rj2cci6na36hxj7k35k8lx666fdam2"; depends=[]; }; @@ -4215,7 +4292,7 @@ ldbounds = derive { name="ldbounds"; version="1.1-1"; sha256="15ixrq615x64zmi6dr ldlasso = derive { name="ldlasso"; version="3.2"; sha256="0ij68zvgm8dfd2qwx6h6ygndac29qa0ddpf11z959v06n8jsnk11"; depends=[GenABEL quadprog]; }; ldr = derive { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; }; leaderCluster = derive { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; -leafletR = derive { name="leafletR"; version="0.3-2"; sha256="183qrfmcanb4c5n3w0vd9xb5mcygjfjc4qr1mzz5jxgjd039g28n"; depends=[brew jsonlite]; }; +leafletR = derive { name="leafletR"; version="0.3-3"; sha256="00xdmlv6wc47lzlm43d2klyzcqljsgrfrmd5cv8brkvvcsyj57kq"; depends=[brew jsonlite]; }; leapp = derive { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[MASS corpcor]; }; leaps = derive { name="leaps"; version="2.9"; sha256="1ax9v983401hvb6cdswkc1k7j62j8yk6ds22qdj24vdidhdz5979"; depends=[]; }; learningr = derive { name="learningr"; version="0.29"; sha256="1nr4ydcq2mskv4c0pmf0kxv5wm8pvjqmv19xz5yaq0j834b0n5q7"; depends=[plyr]; }; @@ -4226,15 +4303,15 @@ lessR = derive { name="lessR"; version="3.3.1"; sha256="1nwvkxi9q7fsjgrfpa16ry54 lestat = derive { name="lestat"; version="1.8"; sha256="12w3s5yr9lsnjkr3nsay5sm4p241y4xz0s3ir56kxjqw23g6m80v"; depends=[MASS]; }; letsR = derive { name="letsR"; version="2.1"; sha256="0jgc6k2hbpbr7kl42n01mff7pzjz60zd8mchrfhzgd797pwcqlbq"; depends=[raster maps XML geosphere fields maptools sp rgdal]; }; lfactors = derive { name="lfactors"; version="0.4.0"; sha256="1f4p5mp6m11njrj421vjl5398laicgyg8m04srshfmpi74hf1nb9"; depends=[]; }; -lfe = derive { name="lfe"; version="2.2-1699"; sha256="1a2y4f25isvnvk0yg6j36s729makr8b1bzwivx4x67aqg8fd09rv"; depends=[Matrix Formula xtable]; }; -lfl = derive { name="lfl"; version="1.0"; sha256="10ypsnzjzygihz019clwnf3gv5b64d873231pjkp772k1n3wgv9a"; depends=[Rcpp foreach forecast plyr tseries e1071 zoo Rcpp]; }; +lfe = derive { name="lfe"; version="2.3-1709"; sha256="0q6va05n38225a7sbk0ykdrygzjk6js6afm2vyy5fac1hbvihb05"; depends=[Matrix Formula xtable]; }; +lfl = derive { name="lfl"; version="1.1"; sha256="1hrdhp2r17qwns5hya9sl03q93h934whqyqsn8mdrsavc64i649v"; depends=[Rcpp foreach forecast plyr tseries e1071 zoo Rcpp]; }; lfstat = derive { name="lfstat"; version="0.6.1"; sha256="0i3zrinvjxlg9w5zqrv8wzy15vxvi2gw3jrlfs4rddkxnp98ya9d"; depends=[lattice lmom lmomRFA latticeExtra]; }; lga = derive { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; }; lgarch = derive { name="lgarch"; version="0.5"; sha256="01y5p3w4i1yfxb647pkdazqn9yac1p6jp7rk92ddxnvvjb6fdp59"; depends=[zoo]; }; lgcp = derive { name="lgcp"; version="1.3-9"; sha256="093rxvb4irmf04nx1j5zrgh8k0jw78zl9qrmkn314vaqyn3b4608"; depends=[spatstat sp raster RandomFields iterators ncdf rpanel fields maptools Matrix rgeos]; }; lgtdl = derive { name="lgtdl"; version="1.1.3"; sha256="00lffc60aq1qjyy66nygaypdky9rypy607mr8brwimjn8k1f0gx4"; depends=[]; }; lhs = derive { name="lhs"; version="0.10"; sha256="1hc23g04b6nsg8xffkscwsq2mr725r6s296iqll887b3mnm3xaqz"; depends=[]; }; -libamtrack = derive { name="libamtrack"; version="0.5.5"; sha256="0v2h4ficf87ai3h2liw8j7428k0bzzb59zini2vskwhcqb7ky7yw"; depends=[]; }; +libamtrack = derive { name="libamtrack"; version="0.6.1"; sha256="0kg3lp1f40hymr2nxq7immxnqryavad91xp6l6x4qyp0cb02870a"; depends=[]; }; lifecontingencies = derive { name="lifecontingencies"; version="1.1.6"; sha256="07gvq93p2f8s4a43h596xmzifnx1jwnfyg5giqhlfvxnq6wdbvrr"; depends=[markovchain Rcpp Rcpp]; }; likeLTD = derive { name="likeLTD"; version="5.5.0"; sha256="111wdszkk2bdi9sz6gfih32kib0ig9bp4xlq6wl5r5zx3nrlj5zb"; depends=[DEoptim ggplot2 gtools rtf gdata]; }; likelihood = derive { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; @@ -4253,13 +4330,14 @@ lintr = derive { name="lintr"; version="0.2.0"; sha256="14jaghvd0kz271j6wl8j0y31 liso = derive { name="liso"; version="0.2"; sha256="072l7ac1fbkh8baiiwx2psiv1sd7h8ggmgk5xkzml069ihhldj5i"; depends=[MASS Iso]; }; lisp = derive { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; }; lisrelToR = derive { name="lisrelToR"; version="0.1.4"; sha256="0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5"; depends=[]; }; -list = derive { name="list"; version="7.1"; sha256="1avbps4di6rhy6rvfyky336zqab65ibfjw2hwp1r713psbmf9z16"; depends=[sandwich VGAM magic gamlss_dist MASS quadprog arm corpcor mvtnorm coda]; }; +list = derive { name="list"; version="8.0"; sha256="09qpcsygs2clbgd42v6klgh1vjhv64s56ixxqlcpg9v7xqnms56j"; depends=[sandwich VGAM magic gamlss_dist MASS quadprog corpcor mvtnorm coda]; }; +listenv = derive { name="listenv"; version="0.3.0"; sha256="14zi2zs6jxcq0j5knf5nlr06xk7n0vvfgbh2lqdjq0pvjbm8j08b"; depends=[]; }; llama = derive { name="llama"; version="0.8.1"; sha256="0pv411kj4n3pi2yg35jzjd4zfxkqksbp049v6d9xd2q14i9kphv2"; depends=[mlr rJava parallelMap ggplot2 checkmate]; }; lle = derive { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[scatterplot3d MASS snowfall]; }; lllcrc = derive { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[data_table combinat VGAM plyr]; }; lm_beta = derive { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; }; lm_br = derive { name="lm.br"; version="2.6"; sha256="1f7cxd6ksspgpz2lnppyb466lgis5isk0bj8z4bjiwk4abg4lg3i"; depends=[Rcpp Rcpp]; }; -lmSupport = derive { name="lmSupport"; version="2.9.1"; sha256="11c86ji7srv80zlrp6c8ark312xzvajig8flc5qm77dgacik8daq"; depends=[car psych gvlma AICcmodavg lme4 pbkrtest]; }; +lmSupport = derive { name="lmSupport"; version="2.9.2"; sha256="0mdl5ih7zzxynawxx4prh08nq451x74bfw4ga7cygl2ahi6vqq50"; depends=[car psych gvlma AICcmodavg lme4 pbkrtest]; }; lme4 = derive { name="lme4"; version="1.1-7"; sha256="0v9vl9rspakyw2dmcl5lbhv1nlg10yhgdvi3gpfnizln7xw9ksyp"; depends=[Matrix Rcpp MASS nlme lattice minqa nloptr Rcpp RcppEigen]; }; lmeNB = derive { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[numDeriv statmod lmeNBBayes]; }; lmeNBBayes = derive { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; @@ -4279,7 +4357,7 @@ lmodel2 = derive { name="lmodel2"; version="1.7-2"; sha256="0dyzxflr82k7ns824zly lmom = derive { name="lmom"; version="2.5"; sha256="0s2x8k6p71hxdqggy8ajk7p9p040b9xr3lm49g31z3kcsmzvk23q"; depends=[]; }; lmomRFA = derive { name="lmomRFA"; version="3.0-1"; sha256="0lf8n6bhdv3px6p60smghvmwsbgawvjrmgy2dfhs517n67pxg30i"; depends=[lmom]; }; lmomco = derive { name="lmomco"; version="2.1.4"; sha256="02c2yhfr08hzlyn2nmfdfvmc3xrc3pp4agc6nkg4w6kk74r003h1"; depends=[]; }; -lmtest = derive { name="lmtest"; version="0.9-33"; sha256="1ycmxjrxf41mnbgakdmn4y2kmgp4rkj7v3nqwqnlc6gdfdmac73s"; depends=[zoo]; }; +lmtest = derive { name="lmtest"; version="0.9-34"; sha256="0bhdfwrrwjkmlw0wwx7rh6lhdjp68p7db5zfzginnv3dxmksvvl6"; depends=[zoo]; }; loa = derive { name="loa"; version="0.2.22"; sha256="13j4d4d35nd2ssmkghpd6azysmy7g8mc9y3glkzjnddp1xxz8icn"; depends=[lattice MASS png RgoogleMaps RColorBrewer]; }; localdepth = derive { name="localdepth"; version="0.5-7"; sha256="0h0y74xnhdqa7y51ljmpz7ayznppvy2ll06wfds6200lb9cxgr7k"; depends=[circular]; }; localgauss = derive { name="localgauss"; version="0.34"; sha256="04bn777kcxaa5s4zf0r9gclar32y9wpzqnx2rxxhqrxyy419gw37"; depends=[ggplot2 MASS foreach matrixStats]; }; @@ -4290,10 +4368,10 @@ locpol = derive { name="locpol"; version="0.6-0"; sha256="1zpdh3g7yx3rcn3rhlc3dm lodGWAS = derive { name="lodGWAS"; version="1.0-3"; sha256="1fb70p2mvp742557ns44ilb9m85aqq59p5x6vdrmb22hczsjj6q4"; depends=[survival rms]; }; loe = derive { name="loe"; version="1.0"; sha256="11wjzq4h7qjrnrj1zg3msg1ksld9c3r3n3biamf2hz8zvi1asvqv"; depends=[igraph MASS vegan Matrix]; }; log4r = derive { name="log4r"; version="0.2"; sha256="07q8m7z2sxm6n25a62invf76qakxdsijfh3272spc8xrmdmyw6rj"; depends=[]; }; -logbin = derive { name="logbin"; version="1.0"; sha256="17vabb348kczn839mhwshn20qgrdnpd0ll81hb8bcsricm6dqhna"; depends=[glm2]; }; +logbin = derive { name="logbin"; version="1.2"; sha256="1jfkg5rx51hm2skwwafqiw6ajdijdm0cniral3j5flidinsbsbcm"; depends=[glm2]; }; logconPH = derive { name="logconPH"; version="1.5"; sha256="05fkibgh5nzs8c4f39kzg4zyh2dfhg1k69hlx7l8p442snajsg92"; depends=[]; }; logconcens = derive { name="logconcens"; version="0.16-4"; sha256="11bk03kjlb747g54axmb0nayz226g41xvanbw79aij76vjbglv7y"; depends=[]; }; -logcondens = derive { name="logcondens"; version="2.1.2"; sha256="0lnsyjl77l9024pqncyxwivmj05f5mfa3563jql47jajaai0my8y"; depends=[ks]; }; +logcondens = derive { name="logcondens"; version="2.1.3"; sha256="0fg7dsila67k80kbh1m1l69pb0pwwr893lkian7a8abx3a1qclij"; depends=[ks]; }; logcondens_mode = derive { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[logcondens distr]; }; logcondiscr = derive { name="logcondiscr"; version="1.0.5"; sha256="170rg4rqch0mlhmc1zc59h271b57y3xfxrc3gh9pwvc9r11gw7k5"; depends=[Matrix mvtnorm cobs]; }; logging = derive { name="logging"; version="0.7-103"; sha256="1sp7q217awizb6l8c9p5dix6skpq8j7w8i088x4mm0fc0qr1ba5c"; depends=[]; }; @@ -4308,11 +4386,11 @@ lomb = derive { name="lomb"; version="1.0"; sha256="06lbk7s1ilqx6xsgj628wzdwmnvb longCatEDA = derive { name="longCatEDA"; version="0.17"; sha256="1yb0117ycj4079590mrx3lg9m5k7xd1dhb779r3rmnww94pmvja9"; depends=[]; }; longclust = derive { name="longclust"; version="1.2"; sha256="1m270fyvfz0w19p9xdv7ihy19nhrhjq2akymbp774073crznmmw0"; depends=[]; }; longitudinal = derive { name="longitudinal"; version="1.1.11"; sha256="0rzi177v9k6gy1wv06vf81r1q0ml81ssf83v0z8rpmx5j91d71ac"; depends=[corpcor]; }; -longitudinalData = derive { name="longitudinalData"; version="2.2"; sha256="1kdgnkhk39a9r4fq6zmrvzcvs7qjd21knpzfjglxyx723r9p3fs7"; depends=[clv class rgl misc3d]; }; +longitudinalData = derive { name="longitudinalData"; version="2.3"; sha256="0ld2saga04if2zp3ylz720q8451f7a7aiva5hpj471wxd0948592"; depends=[clv class rgl misc3d]; }; longmemo = derive { name="longmemo"; version="1.0-0"; sha256="1jnck5nfwxywj74awl4s9i9jn431655mmi85g0nfbg4y71aprzdc"; depends=[]; }; longpower = derive { name="longpower"; version="1.0-11"; sha256="1l1icy653d67wlvigcya8glhqh2746cr1vh1khx36qjhfjz6wgyf"; depends=[Matrix lme4 nlme]; }; loop = derive { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; -loopr = derive { name="loopr"; version="1.0.0"; sha256="19gk3phi45ylkvdfyyr0j0r13ndz7wxl73x0znp2n59vazdgy24w"; depends=[plyr dplyr magrittr lazyeval R6]; }; +loopr = derive { name="loopr"; version="1.0.1"; sha256="1qzfjv15ymk8mnvb556g2bfk64jpl0qcvh4bm3wihplr1whrwq6y"; depends=[plyr dplyr magrittr lazyeval R6]; }; lordif = derive { name="lordif"; version="0.2-2"; sha256="0898k5w9wky318k8x0zknjqdzdify0yyrnb1506j341l4n1bm04s"; depends=[MASS msm mvtnorm polycor sfsmisc ltm Hmisc rms]; }; lorec = derive { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; lpSolve = derive { name="lpSolve"; version="5.6.11"; sha256="0mgpns9wflqaz9ynwxwkvmc1694yhf275wgrqfjfy3qxz1hxq7s0"; depends=[]; }; @@ -4330,13 +4408,13 @@ lsbclust = derive { name="lsbclust"; version="1.0.2"; sha256="03vaf9l0fy3pdr3cqb lsdv = derive { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; lsgl = derive { name="lsgl"; version="1.0.123.1"; sha256="10q3f56yjgs3kvyk7b7d1xi06sa16pv9y3c6lsp1461whqvinpj4"; depends=[sglOptim Matrix sglOptim Rcpp RcppProgress RcppArmadillo BH]; }; lshorth = derive { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; -lsmeans = derive { name="lsmeans"; version="2.17"; sha256="0jpyqrc84w1zxgw7vbrp2263fcbk8rahxq2lqhcf8by47xcgk5kk"; depends=[estimability coda multcomp plyr mvtnorm]; }; +lsmeans = derive { name="lsmeans"; version="2.18"; sha256="1wnpn4hngjcfr44apsw85g3x4wm3ma7msg2n4dnadj0w0zbf0fq4"; depends=[estimability coda multcomp plyr mvtnorm]; }; lspls = derive { name="lspls"; version="0.2-1"; sha256="1g27fqhnx9db0zrxbhqr76agvxy8a5fx1bfy58j2ni76pki1y4rl"; depends=[pls]; }; lsr = derive { name="lsr"; version="0.5"; sha256="0q385a3q19i8462lm9fx2bw779n4n8azra5ydrzw59zilprhn03f"; depends=[]; }; lss = derive { name="lss"; version="0.52"; sha256="1fvs8p9rhx81xfn450smnd0i1ym06ar6nwwcpl74a66pfi9a5sbp"; depends=[quantreg]; }; ltbayes = derive { name="ltbayes"; version="0.3"; sha256="1b35bwli08yzgv3idg86wz8fzpx7r5sx0ryr950rdh0n2jdml09q"; depends=[mcmc MHadaptive numDeriv]; }; ltm = derive { name="ltm"; version="1.0-0"; sha256="1igkgb0jy3mzlnp9s6avhcpplwijz5g3x26a3lavyy3d9fjpmfpa"; depends=[MASS msm polycor]; }; -ltmle = derive { name="ltmle"; version="0.9-5"; sha256="07z576ry6i73l4jp073l360gvhzfdq845x43vrpfq258h7mqhgg4"; depends=[Matrix]; }; +ltmle = derive { name="ltmle"; version="0.9-6"; sha256="0q65ha7j3q9myhsafcmjwyxjf486xw4c3d17gpdnsvq4zqgfsy16"; depends=[Matrix]; }; ltsa = derive { name="ltsa"; version="1.4.4"; sha256="06db0d4j0kqp4q6rpa3sawcsm5rfgdhzl8fl7cxivjbbyrfnszqp"; depends=[]; }; ltsbase = derive { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; }; ltsk = derive { name="ltsk"; version="1.0.3"; sha256="17l4mwggd4s39l6x1b6gvwgd6gjl0h37wfis1i6l9k6hiaqhb6vr"; depends=[fields]; }; @@ -4361,21 +4439,20 @@ mada = derive { name="mada"; version="0.5.7"; sha256="0a2m1rb4d143v9732392xzvbg6 mads = derive { name="mads"; version="0.1.2"; sha256="1hbanfa1wnfvfs0g8dcf5z4439v0pp3rqhxahiis03jlfxzgd841"; depends=[mrds]; }; madsim = derive { name="madsim"; version="1.1"; sha256="1d9mv769zia43krdfl43hp22cp5mdi3ycwj3kxyfcjrg23bjnyc0"; depends=[]; }; magic = derive { name="magic"; version="1.5-6"; sha256="1399w1zhz79nj8cdhslybncd9h6rylfhb548nv22ip0dxxdkyv0v"; depends=[abind]; }; -magicaxis = derive { name="magicaxis"; version="1.9.3"; sha256="0dxlqpxw82v9cxfp475ppd02ywvlg96b1cfj02fjvs04xfprhar0"; depends=[MASS plotrix sm]; }; -magma = derive { name="magma"; version="1.3.0-2"; sha256="0hgwjq30ksx2qg4q9fj57m27i96sci8hrfrqc2lw4hz18b6kkph4"; depends=[]; }; +magicaxis = derive { name="magicaxis"; version="1.9.4"; sha256="0kgr29q4v9aq10l6zkddgv93zl66yzwxx9jsnskkx3r0kk3rlxa3"; depends=[MASS plotrix sm]; }; magrittr = derive { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; mail = derive { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[rJava stringr R_utils]; }; makeProject = derive { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; mallet = derive { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; managelocalrepo = derive { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[stringr assertthat]; }; -manifestoR = derive { name="manifestoR"; version="0.9-12"; sha256="1hz45555941b9jplac4l8l6h4dn387fp4nk873c17mds7xaxzidq"; depends=[NLP tm dplyr httr jsonlite functional]; }; +manifestoR = derive { name="manifestoR"; version="1.0-1"; sha256="1008bz2vsmhx0sx6kc55z8dhlfinbadagz4hd0p50c4q86ibl7lh"; depends=[NLP tm dplyr httr jsonlite functional zoo psych]; }; manipulate = derive { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; mapDK = derive { name="mapDK"; version="0.3.0"; sha256="03ksg47caxx3y97p3nsflwpc7i788jw874cixr9gjz756avwkmwp"; depends=[ggplot2 stringi]; }; mapStats = derive { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[survey lattice maptools RColorBrewer Hmisc classInt sp colorspace reshape2]; }; mapdata = derive { name="mapdata"; version="2.2-3"; sha256="1fhj34cgq6rniy0339qv2ghbs0aiq38h9jfwx7szb83yj37v7wm6"; depends=[maps]; }; mapfit = derive { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; -mapmisc = derive { name="mapmisc"; version="1.2.1"; sha256="1sds83cbsdfb6ac2y13fy1lm7bi27qzkkpjv1cjml8yjwcazfbfj"; depends=[sp raster]; }; +mapmisc = derive { name="mapmisc"; version="1.2.4"; sha256="07h237sgsycagn61rharb09q9s8da777hzngh4py1sbv6gfyqpv8"; depends=[sp raster]; }; mapplots = derive { name="mapplots"; version="1.5"; sha256="09sk78a0p8hlwhk3w2dwvpb0a6p7fqdxyskvz32p1lcav7y3jfrb"; depends=[]; }; mapproj = derive { name="mapproj"; version="1.2-2"; sha256="1fdb72hvcp6jm7rhvs8zdkya6ifs92lfqnmq5vj5amwckkxfidc6"; depends=[maps]; }; maps = derive { name="maps"; version="2.3-9"; sha256="1gzy81sl4vpr4hsnh4jsp5rd26jdkzsw99qxwfmbadjyf55q06wv"; depends=[]; }; @@ -4387,12 +4464,13 @@ marelac = derive { name="marelac"; version="2.1.4"; sha256="0mm1rmaxrbhk6r9z62ns marg = derive { name="marg"; version="1.2-2"; sha256="0j08zzcrj8nqsargi6xi50gy9pl4smmsp4b7ywlga7r1ga38g82r"; depends=[statmod survival]; }; markdown = derive { name="markdown"; version="0.7.7"; sha256="00j1hlib3il50azs2vlcyhi0bjpx1r50mxr9w9dl5g1bwjjc71hb"; depends=[mime]; }; marked = derive { name="marked"; version="1.1.8"; sha256="1xsg0iy8mcy9b98bxmjr3y413xwblbhks3fcydbvjnry0k03gd5i"; depends=[lme4 R2admb truncnorm coda ggplot2 Matrix numDeriv Rcpp plyr optimx expm Rcpp]; }; -markovchain = derive { name="markovchain"; version="0.2"; sha256="03lmvnfdcn4s274ydi5i8xwwm8bl4fv64dwm8mb61nf0i5d0w6ky"; depends=[igraph Matrix matlab expm Rcpp RcppParallel Rcpp RcppParallel]; }; +markovchain = derive { name="markovchain"; version="0.2.1"; sha256="0ix7sdcnsc4bl9diddfl4q0lmq1nq8bp1d7arxzcjj4zy35vhkv5"; depends=[igraph Matrix matlab expm Rcpp RcppParallel Rcpp RcppParallel]; }; marl = derive { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; marmap = derive { name="marmap"; version="0.9.2"; sha256="1csi6v6z2p3nmyqwy8bmbj036693rzmxrc317g0a45gsqxggp3n4"; depends=[DBI RSQLite gdistance geosphere sp raster ncdf plotrix shape reshape2 adehabitatMA ggplot2]; }; marqLevAlg = derive { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; }; matR = derive { name="matR"; version="0.9"; sha256="0lih3g2z6rxykprl3s529xcf466bpzpsv4l20dkgx1fgfslfcl2p"; depends=[MGRASTer BIOM_utils]; }; -matchingMarkets = derive { name="matchingMarkets"; version="0.1-3"; sha256="1q76sw77r90m8wrzj2d81w0fnkqfg8fz5sgpc7m64c5if82z3awa"; depends=[Rcpp lpSolve partitions Rcpp RcppArmadillo RcppProgress]; }; +matchingMarkets = derive { name="matchingMarkets"; version="0.1-4"; sha256="096yknmzla2qq2vkaxna5f8mclayjn5baff3cm8ik95zy7j3lrjp"; depends=[Rcpp lpSolve partitions Rcpp RcppArmadillo RcppProgress]; }; +matchingR = derive { name="matchingR"; version="1.0.1"; sha256="0qqk2zcyj0m3r9q0lclb39gdrjqqjlaxvk3cxpfah7hxhhkrk4mc"; depends=[Rcpp Rcpp RcppArmadillo]; }; mathgraph = derive { name="mathgraph"; version="0.9-11"; sha256="0xikgzn24p0qqlrmaydmjk5yz5pq2rilsvpx86n3p2k2fc3wpwjy"; depends=[]; }; matie = derive { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[dfoptim mvtnorm seriation igraph gplots cba]; }; matlab = derive { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; @@ -4428,13 +4506,13 @@ mco = derive { name="mco"; version="1.0-15.1"; sha256="14y10zprpiflqsv5c979fsc2b mcprofile = derive { name="mcprofile"; version="0.2-1"; sha256="0q1d236mcmgp5p5gl474myp1zz8cbxffd0kvsd8338jijalj05p0"; depends=[ggplot2 quadprog mvtnorm]; }; mcr = derive { name="mcr"; version="1.2.1"; sha256="0237w41xichd418ax9xviq4wxbcc6c0cgr5gvzkca67nnqgc4jaz"; depends=[]; }; mcsm = derive { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[MASS coda]; }; -mda = derive { name="mda"; version="0.4-6"; sha256="0v6avsq1j3vd8pmnilxcbx6v42kb5gvsy03q2srwzf3z04807n8i"; depends=[class]; }; +mda = derive { name="mda"; version="0.4-7"; sha256="1hjmjrdr6zfccsd4xln1jvkkvk25igppvnl6mqznfc7qsmk459cy"; depends=[class]; }; mdatools = derive { name="mdatools"; version="0.6.0"; sha256="13pfzr3lvqifln9lzdd0dpnygdibxp9ka7zwfisxjrw21m8mhmm3"; depends=[]; }; mded = derive { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; mdscore = derive { name="mdscore"; version="0.1-2"; sha256="1g473rwffkb2x6y6wcm98i6xr5dhz11ypnbrvhb2klbvi81jj511"; depends=[MASS]; }; mdsdt = derive { name="mdsdt"; version="1.0"; sha256="0ngf2p6lm32124qyfh18zlgf0dipj3njn6d0m8f192563kp50q0p"; depends=[ellipse mnormt polycor]; }; measuRing = derive { name="measuRing"; version="0.3"; sha256="16lgvk9lm0vjy50das0qq0h0z683hh94spjcdmkljmxxzwmzfl4b"; depends=[pastecs png tiff]; }; -meboot = derive { name="meboot"; version="1.4-5"; sha256="1h33f3dpx906q5nmd57hhkq07mbs2kg8mv6mi4imaa2zpr5vc4py"; depends=[dynlm nlme]; }; +meboot = derive { name="meboot"; version="1.4-6"; sha256="17wjvc375vnya1lhkj10nsn68k1j3zy036031qca3wxx6wqw9kzx"; depends=[dynlm nlme]; }; medSTC = derive { name="medSTC"; version="1.0.0"; sha256="1f7w6jbxairqvghr5b7vgdllg3ian16a1fgi7vqlq0mhy2j6phan"; depends=[]; }; mederrRank = derive { name="mederrRank"; version="0.0.7"; sha256="08jbqmb418qb7v2x6lm4wig1pfzzfx6fhb49mbfhlkbmssbqsjfq"; depends=[BB numDeriv]; }; medflex = derive { name="medflex"; version="0.5-0"; sha256="06zp0la99ly2vpm97l3qm289inyd0bxgkjd4cv15mvc47w9c9x9x"; depends=[multcomp boot Matrix sandwich]; }; @@ -4456,24 +4534,27 @@ metaLik = derive { name="metaLik"; version="0.41.0"; sha256="08wiriq6cm02d0b0q34 metaMA = derive { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[SMVar]; }; metaMix = derive { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table Matrix gtools Rmpi ggplot2]; }; metaRNASeq = derive { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; }; +metaSEM = derive { name="metaSEM"; version="0.9.4"; sha256="1d790z462g9qnrxl5p3a50abaachc2wih10zsk6jpbf10z694g13"; depends=[OpenMx Matrix MASS]; }; metabolomics = derive { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots]; }; metacom = derive { name="metacom"; version="1.4.3"; sha256="0djq2ry2vriayn839f0pgkq4j8j1zyd8ribmzn6ngfhz305fszlq"; depends=[devtools vegan lattice]; }; metacor = derive { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[rmeta gsl]; }; metafolio = derive { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[Rcpp plyr colorspace MASS Rcpp RcppArmadillo]; }; -metafor = derive { name="metafor"; version="1.9-6"; sha256="1bjhzkim64035xk04kc1ra4ih6gxfsn389gag21mf9zhk0mi6yd0"; depends=[Matrix]; }; +metafor = derive { name="metafor"; version="1.9-7"; sha256="1gnq9qrz3ym9az9s6pi48dx7j3znrp9knbdmh4qpdhjkdlpa55d1"; depends=[Matrix]; }; +metagear = derive { name="metagear"; version="0.1"; sha256="1c00y7p7063f3c1ar17r9ij5j4chzyispg0wprkjaaz0mx9w1hb0"; depends=[gWidgetsRGtk2 gWidgets stringr metafor MASS Matrix]; }; metagen = derive { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[MASS lhs plyr BBmisc ParamHelpers BatchJobs BatchExperiments ggplot2 metafor]; }; metamisc = derive { name="metamisc"; version="0.1.1"; sha256="1cvlsix3b857xdw6anqhqsrfwxpnf4rbzg4ybf6aw7vcdc05zgwd"; depends=[mvtnorm ellipse bbmle rjags coda]; }; metap = derive { name="metap"; version="0.6"; sha256="1iy5cmwrlsr70z0qnqn30n15knsfclg383815a2a8yqpg5gs4953"; depends=[]; }; -metaplus = derive { name="metaplus"; version="0.7-1"; sha256="17wn2x8dnfzm98bd007axq9ak38hphx08vqpk6ba0jahlfvqqdiz"; depends=[bbmle metafor boot numDeriv lme4 MASS]; }; +metaplus = derive { name="metaplus"; version="0.7-2"; sha256="1d9528z78vmkmv67s29g87kfdwydfwx4cnbcdmd0kq8rch9zjk07"; depends=[bbmle metafor boot numDeriv lme4 MASS]; }; metasens = derive { name="metasens"; version="0.2-0"; sha256="13mncikxzg8cnpbw78ird1xkrjlivmjibhrk700vdx1hygzwi6x0"; depends=[meta]; }; metatest = derive { name="metatest"; version="1.0-4"; sha256="0bz6gg2n4ffkr144jxk27y24xpqhp8awr09wkaijmv8902qx6qah"; depends=[]; }; -meteoForecast = derive { name="meteoForecast"; version="0.43"; sha256="1fpbxkdkgi50xbx3n26apdm6i29a2302vabfz0z3czafd76wkwg7"; depends=[raster sp zoo ncdf rjson]; }; +meteoForecast = derive { name="meteoForecast"; version="0.45"; sha256="0p74w5zcibzw2vpbyl4jb2wzpz0pki1n1l66hjs6dnkrn52zph95"; depends=[raster sp zoo ncdf]; }; meteogRam = derive { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; -mets = derive { name="mets"; version="1.1.0"; sha256="0nfyfmhcd4sy2j1nymgw4yz0b5a36s2dqx42kzwbzgvp1m11z225"; depends=[timereg lava numDeriv Rcpp survival Rcpp RcppArmadillo]; }; +mets = derive { name="mets"; version="1.1.1"; sha256="1myqcds9glsy3fwzr7v711xzk7gmvy2cb4x3qgj1kxa90d1d50hz"; depends=[timereg lava numDeriv Rcpp survival Rcpp RcppArmadillo]; }; mewAvg = derive { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; mfp = derive { name="mfp"; version="1.5.1"; sha256="0flqrvicgks7nxxijhndshpf541drlgqjidm3nql1bg5hnpc5fcq"; depends=[survival]; }; mfx = derive { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[sandwich lmtest MASS betareg]; }; mgcv = derive { name="mgcv"; version="1.8-6"; sha256="0605cqrbk26zg8s8qdd8kqwq56wihx7r6hfzr4x0xzk4y1g0m2rq"; depends=[nlme Matrix]; }; +mglmn = derive { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; }; mgpd = derive { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[evd numDeriv corpcor fields]; }; mgraph = derive { name="mgraph"; version="1.03"; sha256="0av2c0jvqsdfb3i0s0498wcms0n2mm0z3nnl98mx2fy7wz34z8b2"; depends=[rgdal]; }; mhsmm = derive { name="mhsmm"; version="0.4.14"; sha256="1zrqnzbmlk3kmwbq9rl4bdkc9iawkgn3qr7nzsa782v55i7w2wiz"; depends=[mvtnorm]; }; @@ -4487,7 +4568,7 @@ micEconAids = derive { name="micEconAids"; version="0.6-16"; sha256="07hsabrlkwp micEconCES = derive { name="micEconCES"; version="0.9-8"; sha256="06g6z8hf7y9d942w6gya0fd5aidzfjkx3280gjygdlwpv7nlpqzv"; depends=[minpack_lm DEoptim systemfit car micEcon miscTools]; }; micEconSNQP = derive { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[miscTools systemfit MASS]; }; mice = derive { name="mice"; version="2.22"; sha256="1b7ivpa21ipzbmmwjn1ch968zpw6wydg30f7jdk95m40lrk2xs68"; depends=[Rcpp lattice MASS nnet randomForest rpart Rcpp]; }; -miceadds = derive { name="miceadds"; version="1.1-1"; sha256="1hzx9gf73kgpaa1l0889ybc8qsi703sc4z8wd8jfayhi57rigikb"; depends=[MASS mice mvtnorm pan Rcpp sirt TAM lme4 MBESS pls mitools bayesm inline car foreign Rcpp RcppArmadillo]; }; +miceadds = derive { name="miceadds"; version="1.2-0"; sha256="01gbkpmmd81v5yhj3jparp7li1jzq91f5zk65dhcd8g3a0k0952m"; depends=[MASS mice mvtnorm pan Rcpp sirt TAM lme4 MBESS pls mitools bayesm inline car foreign sjmisc multiwayvcov Rcpp RcppArmadillo]; }; microbenchmark = derive { name="microbenchmark"; version="1.4-2"; sha256="05yxvdnkxr2ll94h6f2m5sn3gg7vrlm9nbdxgmj2g8cp8gfxpfkg"; depends=[ggplot2]; }; micromap = derive { name="micromap"; version="1.9.2"; sha256="1x4v0ibbpfz471dp46agib27i4svs8wyy93ldriryvhpa2w5948y"; depends=[maptools RColorBrewer rgdal sp ggplot2]; }; micromapST = derive { name="micromapST"; version="1.0.5"; sha256="1n9mzyl5dj21165j0j99brkqq7c54j3cg6r21ifdzffj2dx29wh0"; depends=[RColorBrewer]; }; @@ -4519,9 +4600,10 @@ missForest = derive { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfka missMDA = derive { name="missMDA"; version="1.7.3"; sha256="1wg4rgziw2f8asdxi2a5dx1mn4z0sd1lf9a8fp7dg29bnv82brmh"; depends=[FactoMineR]; }; mistat = derive { name="mistat"; version="1.0-2"; sha256="1n5wdn5pl6mflzxpdwjj0x44c8a3cxxpwhmyw1jkx5r8yk95mh3p"; depends=[]; }; mistral = derive { name="mistral"; version="1.1-1"; sha256="19zkc5ddjzw17y70x3l6maljsfvg0295xyzx7kavmjrws74jx4rc"; depends=[DiceKriging e1071 kernlab Matrix mvtnorm rgenoud]; }; +mitml = derive { name="mitml"; version="0.2-2"; sha256="11pgwa1cxf1i2qkm8gyzxsjkhg40r75gk2k1lwaqpqgi7vs3drbs"; depends=[pan haven]; }; mitools = derive { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive { name="mix"; version="1.0-8"; sha256="0wlp6wkn8dwwnjfq3qzk0hjb3xsjh5ld5zxbd6nf12awpkwa1j9y"; depends=[]; }; -mixAK = derive { name="mixAK"; version="3.10"; sha256="1mma3515p1r5nhbmdyxzvv73ni5iw4arnzq94nw9gib1dgjpm7c5"; depends=[colorspace lme4 fastGHQuad mnormt coda]; }; +mixAK = derive { name="mixAK"; version="4.0-5"; sha256="1kdcia6j2dw4q1rbrswx9h8ivzrnw8hrg5a206jykmsdbngbifx5"; depends=[colorspace lme4 fastGHQuad mnormt coda]; }; mixOmics = derive { name="mixOmics"; version="5.0-4"; sha256="020cy0x7qf6x7lb1aqfr6qflf08k2phnygcjr7lq4z8q9v502qyh"; depends=[MASS lattice RGCCA igraph rgl pheatmap]; }; mixPHM = derive { name="mixPHM"; version="0.7-1"; sha256="0v75xv06m40jqq0c4y1gvdrmyddxs814djbpyq61fv8cn22fn7wx"; depends=[survival lattice]; }; mixRasch = derive { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; }; @@ -4538,13 +4620,15 @@ mixsep = derive { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9 mixsmsn = derive { name="mixsmsn"; version="1.0-9"; sha256="0pgip1xfgfrdy3g3197d7visn164zi7xnp6wlsgjwxdylvjsxkji"; depends=[mvtnorm]; }; mixtNB = derive { name="mixtNB"; version="1.0"; sha256="0lqbm1yl54zfs0xcmf3f2vcg78rsqyzlgvpydhmhg7x6dkissb22"; depends=[]; }; mixtools = derive { name="mixtools"; version="1.0.3"; sha256="01ix019cvplqz09q55pz9w7cc281k37khh1i3xf1k6l9f2cj519z"; depends=[boot MASS segmented]; }; +mixtox = derive { name="mixtox"; version="1.0"; sha256="059vjrz9isyrdqk2ij4b11dawza2yslh67bj7gi9v5awzcf4n2v7"; depends=[]; }; mixture = derive { name="mixture"; version="1.4"; sha256="0k9pzcgfjyp0rmcma26kr2n8rcwmijznmdpvqidgl3jay20c87ca"; depends=[]; }; mizer = derive { name="mizer"; version="0.2"; sha256="0cpal9lrjbvc923h499hbv4pqw3yjd4jvvhgayxgkak2lz2jzmcz"; depends=[plyr reshape2 ggplot2]; }; mkde = derive { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[Rcpp raster sp Rcpp]; }; -mkin = derive { name="mkin"; version="0.9-34"; sha256="0g0r30hs5ja2x1mwj336x8y3p0b33asfql076w2krmw38xkpla44"; depends=[minpack_lm rootSolve FME deSolve]; }; +mkin = derive { name="mkin"; version="0.9-35"; sha256="0ac71wkl8b034l1bbv8qr5ynvpl8l9j31ych5v5pf6mmqs62bwnr"; depends=[minpack_lm rootSolve FME deSolve]; }; mkssd = derive { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; mlDNA = derive { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[snowfall igraph rsgcc e1071 randomForest pROC ROCR]; }; mlPhaser = derive { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; }; +mlVAR = derive { name="mlVAR"; version="0.1.0"; sha256="0xychak3xdqnsl9z1ifi0niqsrdc10f6frl6zg162mzpil33wp3g"; depends=[plyr lme4 arm qgraph]; }; mlbench = derive { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; mldr = derive { name="mldr"; version="0.1.70"; sha256="08yiglqzlqxlfrxd7l12x59h7a38skrkkf8w7jh620ab7a7w1gyg"; depends=[shiny XML circlize]; }; mlearning = derive { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class nnet MASS e1071 randomForest ipred]; }; @@ -4557,7 +4641,7 @@ mlmmm = derive { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4s mlogit = derive { name="mlogit"; version="0.2-4"; sha256="15ndly7i56k8blgvpn15ixxnqx9yvbci7n3mb3hm9mnrxwh5v7sx"; depends=[Formula maxLik statmod zoo MASS lmtest]; }; mlogitBMA = derive { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[BMA abind maxLik]; }; mlr = derive { name="mlr"; version="2.3"; sha256="0cvg2bxxw3c69lj5wy4ds54wn5h299c5mjcsbax1p0k408z5aa6z"; depends=[ParamHelpers BBmisc ggplot2 checkmate parallelMap plyr reshape2 survival]; }; -mlxR = derive { name="mlxR"; version="2.1.1"; sha256="13ddm4hhnjx7r058qlvvxn9npqa0vq6y5l1g0zrlhckjp7bpp90a"; depends=[ggplot2 XML Rcpp]; }; +mlxR = derive { name="mlxR"; version="2.2.0"; sha256="1ca0vfky45gvr2rqbgli79v1mqhi0d8mpd220xxs1p6xlwbyvn0m"; depends=[ggplot2 XML Rcpp]; }; mma = derive { name="mma"; version="2.0-0"; sha256="0fdb2lbg08l47wnrsjf3rarf2n0qsw0qrx9b9aa08ablwpip4k69"; depends=[gbm]; }; mmand = derive { name="mmand"; version="1.1.0"; sha256="0awi9wxxalz81d6766djbjsk980n65dhz02fcqb69ifc7x80lc33"; depends=[reportr Rcpp Rcpp RcppArmadillo]; }; mmap = derive { name="mmap"; version="0.6-12"; sha256="12ql03wzwj23h8lwd07rln6id44mfrgf9wcxn58y09wn3ky1rm6a"; depends=[]; }; @@ -4570,13 +4654,14 @@ mmm = derive { name="mmm"; version="1.4"; sha256="1nydian004nldqhyw3x15w6qfml2gk mmm2 = derive { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; mmod = derive { name="mmod"; version="1.2.1"; sha256="0c2ijg5116hacq0f18xhkbxankjp0k34zfnw8q02ahzwd26ds0z7"; depends=[adegenet pegas]; }; mmpp = derive { name="mmpp"; version="0.1"; sha256="1m2079vz4h3h90ikh268jwh20ink5n1mri8n7aj50xkfspmwsmpg"; depends=[]; }; -mnlogit = derive { name="mnlogit"; version="1.2.0"; sha256="0ymkm3xwm97v5f9lg2ir4czdfb47hibgrkirc2iw66fh24iah84m"; depends=[mlogit lmtest Formula]; }; +mnlogit = derive { name="mnlogit"; version="1.2.2"; sha256="01wvlmkf9ddcmsb8pw08j05r7kfn8zr76zaaa3mv92h967v79grp"; depends=[mlogit lmtest Formula]; }; mnormpow = derive { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; -mnormt = derive { name="mnormt"; version="1.5-2"; sha256="0k3mj7yyh599z93iw8zhfwvj6xjl4g2wzs3hdj1df7vbz1yynp8i"; depends=[]; }; +mnormt = derive { name="mnormt"; version="1.5-3"; sha256="1mw5fk4q5cnj2x2938di58179fr51l396qd61i6y5vwmcccj0kn9"; depends=[]; }; modMax = derive { name="modMax"; version="1.0"; sha256="0p8vnlbw53lqbaq3819jhixq6ns2lwxf56w2md7y98rshf92h474"; depends=[gtools igraph]; }; modTempEff = derive { name="modTempEff"; version="1.5.2"; sha256="00xdvc0i3p8wq913giy44w0xz07sa4bdgqpi7pmpbv2c5wj30pk1"; depends=[mgcv]; }; modeest = derive { name="modeest"; version="2.1"; sha256="0l4y7yhkgsxycdd2lck0g8g6k2r059hwlrrcpl46md3rva4jgbnp"; depends=[]; }; modehunt = derive { name="modehunt"; version="1.0.6"; sha256="15rq1yyrjhsn2rlkyiqj36jvji635hy6jsih845mfxdpn4vnssa3"; depends=[]; }; +modelObj = derive { name="modelObj"; version="1.0"; sha256="0r4smak9hni9pzih4nzkpv3bq18acrsmmxs1a13wq3pgjfvkwa63"; depends=[]; }; modelfree = derive { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; modeltools = derive { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; }; modiscloud = derive { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date sp sfsmisc raster rgdal]; }; @@ -4586,7 +4671,7 @@ mombf = derive { name="mombf"; version="1.5.9"; sha256="0lc3rrmm2vsa4mg2zkbhp5dp momentchi2 = derive { name="momentchi2"; version="0.1.0"; sha256="02k4hzhqmqh7sx7dzb6w84fc1f5523md3284y4gvdbaw9y34ayk8"; depends=[]; }; moments = derive { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; mondate = derive { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; }; -mongolite = derive { name="mongolite"; version="0.2"; sha256="0lyq565c8xqxcm5sbg1rp3myppbw4hbqr3fiqzvcqpp72ar6ywvv"; depends=[jsonlite]; }; +mongolite = derive { name="mongolite"; version="0.4"; sha256="0jrjf9sh8y7n4lgy54y5pl9dw6z4c5qb903l0907finm749cb2w1"; depends=[jsonlite]; }; monitoR = derive { name="monitoR"; version="1.0.3"; sha256="0g2dhyz3411pa6kcsmmi9x77ygvdrvas3k9ps0w2r69mfab785c6"; depends=[tuneR]; }; monmlp = derive { name="monmlp"; version="1.1.2"; sha256="14x6xz07hg2c5n36rc314z66jqvgmicjxi2vsqyy91vwjxs9akrm"; depends=[]; }; monomvn = derive { name="monomvn"; version="1.9-5"; sha256="1fh0c1234hb5f3rwy85i4rlzc3n1851q5mivckcjs2vdm9rz25mg"; depends=[pls lars MASS]; }; @@ -4596,7 +4681,7 @@ moonsun = derive { name="moonsun"; version="0.1.3"; sha256="1y8mwxmcy4iz444c2fay mopsocd = derive { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; morgenstemning = derive { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; morse = derive { name="morse"; version="1.0.2"; sha256="044aljv48mfq6yj9i77yqf03qa4qqkncaalzhph3wr9w4jvxpxn5"; depends=[plyr]; }; -mosaic = derive { name="mosaic"; version="0.9.2-2"; sha256="1fx3nbndvvif1pwl013clh91s229yg7fnr0kp842jyx03hkcinba"; depends=[car dplyr lattice ggplot2 mosaicData MASS reshape2 plyr latticeExtra gridExtra ggdendro]; }; +mosaic = derive { name="mosaic"; version="0.10.0"; sha256="0hhln6kfxdk6z4rmi3378cs18ziwa5awi53ylnx5kva7f42m5jxr"; depends=[car dplyr lattice ggplot2 mosaicData lazyeval MASS reshape2 plyr readr latticeExtra gridExtra ggdendro]; }; mosaicData = derive { name="mosaicData"; version="0.9.1"; sha256="0gxnw3x806pm97x1043qq3qf1cwn1z1771cayp3xlh5khn5bijk7"; depends=[]; }; moult = derive { name="moult"; version="1.4"; sha256="0nglf7wijp2v66fpyh88glbn1glp8vvkbvpc1g6136bg6ahbbkkl"; depends=[Formula Matrix]; }; mountainplot = derive { name="mountainplot"; version="1.0"; sha256="1hjmzig0s4vjlkpqhvf4v6z2gd8ljy14z5n1m9y21is9yp2cy6xf"; depends=[lattice]; }; @@ -4606,9 +4691,10 @@ move = derive { name="move"; version="1.4.496"; sha256="0p20c6rqxk299pqd10icq4a5 mp = derive { name="mp"; version="0.2.0"; sha256="1vpjrx04yn1rdmrhj42rhc757cj02sghrv0i5jfm4k2y28ab7qh1"; depends=[svd Rcpp Rcpp RcppArmadillo]; }; mpMap = derive { name="mpMap"; version="1.14"; sha256="0gmhg5ps8yli8699a5aw26skfbjxx4zpp0paqxxdc0zl28l0pdff"; depends=[gdata seriation qtl wgaim]; }; mpa = derive { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; }; -mpath = derive { name="mpath"; version="0.1-17"; sha256="031mf0b32435y0cfar7zh9d1wd62ghqpspipin1cjhvnr2lyzw21"; depends=[MASS glmnet pscl numDeriv]; }; +mpath = derive { name="mpath"; version="0.1-18"; sha256="04d6lbsqjmr6pkyfpr2vw3rhv5hi044rx1n1isgw96j2c0f7dgzv"; depends=[MASS glmnet pscl numDeriv]; }; mpcv = derive { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; mph = derive { name="mph"; version="0.9"; sha256="11wcy23sv8x7aq6ky8wi0cq55yhjkkm9hn672qy803dwzzxv5y61"; depends=[]; }; +mplot = derive { name="mplot"; version="0.6.2"; sha256="0lnslv471abhfr245wx24ps3c97qs54i43ybpc1f8mqsxh0vxz3s"; depends=[leaps foreach bestglm doParallel plyr shinydashboard shiny googleVis]; }; mpm = derive { name="mpm"; version="1.0-22"; sha256="0wijw8v0wmbfrda5564cmnp788qmlkk21yn5cp5qk8aprm9l1fnk"; depends=[MASS KernSmooth]; }; mpmcorrelogram = derive { name="mpmcorrelogram"; version="0.1-3"; sha256="0qgzsh744002whh3v1hrxs1i0xnk9zgfgkdgx2f0ffj00vvnwr97"; depends=[vegan]; }; mpmi = derive { name="mpmi"; version="0.41"; sha256="1iwdhvdglsamzq18f0r5mh0anrd4ffrddafdlbw16kr8jy0c8fdn"; depends=[KernSmooth]; }; @@ -4658,7 +4744,7 @@ multimark = derive { name="multimark"; version="1.1.4"; sha256="045lfgzxwz4m1y5g multinbmod = derive { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; multinomRob = derive { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[rgenoud MASS mvtnorm]; }; multipleNCC = derive { name="multipleNCC"; version="1.0"; sha256="13z6yq77h1r6kp8wgza58c6yp9a1gqm0w36x534mxbhcmingdw9f"; depends=[survival gam]; }; -multiplex = derive { name="multiplex"; version="1.5"; sha256="1sc4jnmh3lfpx92cpqd8phm09dn9xaq4qdq9301dccw3f0m260md"; depends=[]; }; +multiplex = derive { name="multiplex"; version="1.6"; sha256="052qjqkwf2sp4w7hv5gj9x3vhwjpa6k10sr969283z7aw6c1yb4g"; depends=[]; }; multipol = derive { name="multipol"; version="1.0-6"; sha256="1yjz0p4mcgzs98s61i8315wyhh986jxp8b0lq66375ckpr2ddcss"; depends=[abind]; }; multirich = derive { name="multirich"; version="2.0.2"; sha256="1lqc4np45p9ar9l8l1m5bdh98fsmhvzj8s0b2mcp9cqrvnhp1irc"; depends=[]; }; multisensi = derive { name="multisensi"; version="1.0-8"; sha256="168g6hym5chz69wa3vfprg1m1c935wh7bi3gfz5calxiqf89mncz"; depends=[]; }; @@ -4679,7 +4765,7 @@ mvMORPH = derive { name="mvMORPH"; version="1.0.5"; sha256="184ywvgi2dz77ivl2g7s mvProbit = derive { name="mvProbit"; version="0.1-0"; sha256="0fnrlralydlsf9iphq385f8hpqigfmi8rafvgp443gygvpq5b6g0"; depends=[mvtnorm maxLik abind bayesm miscTools]; }; mvSLOUCH = derive { name="mvSLOUCH"; version="1.1.5"; sha256="1cq1j4f1k0xhq2ncmji1a4p4m6h7k2afsr39abib4g3md902v0hp"; depends=[ouch ape numDeriv mvtnorm corpcor]; }; mvShapiroTest = derive { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; -mvabund = derive { name="mvabund"; version="3.9.3"; sha256="1vr4rw8ivkhmzrpvz2k8v594cavrw88i7nqr9g1mar76d9mpchkx"; depends=[Rcpp MASS tweedie statmod Rcpp]; }; +mvabund = derive { name="mvabund"; version="3.10.4"; sha256="1hza09nghgz0iyfayqabf5d0yb6zqnvhwmprif6y9qix8jscilwl"; depends=[Rcpp MASS tweedie statmod]; }; mvbutils = derive { name="mvbutils"; version="2.7.4.1"; sha256="1vs97yia78xh35sdfv5pj3ddqmy83qgamvyyh9gjg0vdznqhffzg"; depends=[]; }; mvc = derive { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; mvctm = derive { name="mvctm"; version="1.0"; sha256="1naxjh2k3vv4wlpzzx0y2zwvbn4kdqyls8a8qx6bz609ynzay5r9"; depends=[Formula nlme MNM quantreg Rfit]; }; @@ -4687,7 +4773,7 @@ mvcwt = derive { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6j mvglmmRank = derive { name="mvglmmRank"; version="1.0-2"; sha256="0gpp0ibgji86pxscqzcws0d1qn1ciqqvyfb0x2v18580r4cx8jv7"; depends=[Matrix numDeriv]; }; mvinfluence = derive { name="mvinfluence"; version="0.6"; sha256="1cd5p6cl2zln8madjf3vsbmqlg4nsklzzy6ngdd5glj1a9qapd6c"; depends=[car heplots]; }; mvmesh = derive { name="mvmesh"; version="1.0"; sha256="168s3n3ibiwdk0wys4kjj1xdpkz891rq5dv3lqf4pil83kbw8jw9"; depends=[rcdd rgl]; }; -mvmeta = derive { name="mvmeta"; version="0.4.5"; sha256="0faczanbz6i7794sqxm21a6v52cs5hrjjzdypdvi23bkl4mkxjrb"; depends=[]; }; +mvmeta = derive { name="mvmeta"; version="0.4.7"; sha256="1yadaviq66wdfs0dipn6gxk7jqvzwzjdr8lkfggdsl4vyyi9pwip"; depends=[]; }; mvna = derive { name="mvna"; version="1.2-3"; sha256="1gwv17j6w9c38bqvnasv9kfigbdxiqkzwj89gqmkxgw715f9nnpp"; depends=[lattice]; }; mvnfast = derive { name="mvnfast"; version="0.1.3"; sha256="1ghm6zdrh2ax8r4jin8gka0qjwcsixn5faclf17sr5bx7l5b62np"; depends=[Rcpp Rcpp RcppArmadillo BH]; }; mvngGrAd = derive { name="mvngGrAd"; version="0.1.5"; sha256="0ir4pakfb2jq84rbfqix6rph8q6cgadjdn49rrdl4439b8hlsg8k"; depends=[]; }; @@ -4704,7 +4790,7 @@ mvtsplot = derive { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw mwa = derive { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem rJava MASS]; }; mwaved = derive { name="mwaved"; version="1.1.1"; sha256="1hn6nbwawkizv9v4k98hm5lz94yha2fng76x0r9f804whmv1pz36"; depends=[Rcpp shiny Rcpp]; }; mxkssd = derive { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; -myTAI = derive { name="myTAI"; version="0.0.2"; sha256="1qnnlf8c8qkcvl5sh9qd19drlfmjhmy3grxhlnlbz7v11zcbvah8"; depends=[Rcpp nortest fitdistrplus foreach doParallel dplyr Rcpp]; }; +myTAI = derive { name="myTAI"; version="0.1.0"; sha256="0qz2mm3ca5i93kz3pg8llpniix3vdy7mxz1n8k36iap09rbsrgmi"; depends=[Rcpp nortest fitdistrplus foreach doParallel dplyr Rcpp]; }; mycobacrvR = derive { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; mycor = derive { name="mycor"; version="0.1"; sha256="1ibcxl9v2d2mxpwad0rv5dw1j645rrg05f4aqvyhyd40hz9823mr"; depends=[lattice]; }; myepisodes = derive { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; @@ -4714,21 +4800,22 @@ nCal = derive { name="nCal"; version="2015.3-3"; sha256="0vj6l8w29ymj1v18mb4qyw6 nFCA = derive { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; }; nFactors = derive { name="nFactors"; version="2.3.3"; sha256="016d76yfxz7gx7zz5dgwjmj2c5m6kxdmqj0lln5w6d70r9g1kxg7"; depends=[MASS psych boot lattice]; }; nLTT = derive { name="nLTT"; version="1.1"; sha256="0hrrwil7vcym7zjbnzviw13p60y14w660vndvc2lm5lmhbb8nhcn"; depends=[ape coda deSolve]; }; -nabor = derive { name="nabor"; version="0.4.4"; sha256="0465wkyggz4665b2ph1qpyxsmak0arfzpxaci1r0lrf5ddyp0n6y"; depends=[Rcpp Rcpp RcppEigen BH]; }; -nadiv = derive { name="nadiv"; version="2.13.2"; sha256="1r63z08k46b6hryxracicsw1hr91x4pgk2x58c9nijdni4my7kkc"; depends=[Matrix]; }; +nabor = derive { name="nabor"; version="0.4.6"; sha256="0kd0h8n5yrn16vrfdchdiqzws05q0fm8z577p20dm18gdcs2vbxv"; depends=[Rcpp Rcpp RcppEigen BH]; }; +nadiv = derive { name="nadiv"; version="2.13.3"; sha256="0ph05a1yvphij41fgm4gnvijqni29n4jx2my6s0pd9l67bwa56c8"; depends=[Matrix]; }; namespace = derive { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nanop = derive { name="nanop"; version="2.0-5"; sha256="0zdn2hgp516hcqpc2w2vzhhalcr05dlw539zj3afzi75w8rwb71z"; depends=[distrEx rgl]; }; nasaweather = derive { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; -nat = derive { name="nat"; version="1.6.4"; sha256="1a4wr1378y8crmpk150gmzjc12wn4q9l6nbghddizyw9827b5my1"; depends=[rgl nabor igraph filehash digest nat_utils plyr yaml]; }; +nat = derive { name="nat"; version="1.6.6"; sha256="0jqpj9hrz8xqikl84b9nzi1hh82cmry18vpca7s8dl4824yadkrw"; depends=[rgl nabor igraph filehash digest nat_utils plyr yaml]; }; nat_nblast = derive { name="nat.nblast"; version="1.5"; sha256="1slpk126fwgn90j3aazlf3pw2ij050dghc1yqadv6mjcj82qpm5i"; depends=[rgl nat nabor dendroextras plyr spam]; }; nat_templatebrains = derive { name="nat.templatebrains"; version="0.4.1"; sha256="06vqnrwcara4ljkf5wbwqbsfx1ypd8xsv8pbrs5x6hyj5jxnnvaz"; depends=[rgl nat]; }; nat_utils = derive { name="nat.utils"; version="0.4.2"; sha256="0k5bdqwrbq82bb9ld90ia7b4vjaczba20h231a129rkszsy6sz9v"; depends=[]; }; naturalsort = derive { name="naturalsort"; version="0.1.2"; sha256="0m8a8z0n5zmmgpmpn5w87j2jfsz1igz3x133z3q25h8jlyaxy750"; depends=[]; }; -nbpMatching = derive { name="nbpMatching"; version="1.4.4"; sha256="0dnj97aj2x81yppw3rayxxaf2bb68l5x5f2852l5xmvpxb73w478"; depends=[Hmisc MASS]; }; +nbconvertR = derive { name="nbconvertR"; version="1.0"; sha256="1yjsw5aq68ya4k1nl2n6q5d5z5yzqskgnpj3gms67ha3dhmz78jr"; depends=[]; }; +nbpMatching = derive { name="nbpMatching"; version="1.4.5"; sha256="1bglrzhap9rar6c8c2c5009l1ljq44mys66jpafw4xyw2pq7djqg"; depends=[Hmisc MASS]; }; ncappc = derive { name="ncappc"; version="0.1"; sha256="1145y9k718245mzs8q33mjwcln79dmiyawy771zrk3kpxhfb5985"; depends=[ggplot2 gridExtra scales gtable PerformanceAnalytics lattice knitr xtable reshape2]; }; ncbit = derive { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; ncdf = derive { name="ncdf"; version="1.6.8"; sha256="1vrbrrqij7p712wfrki09749yryzr9lg4p95yqvb0zzggqpw2snm"; depends=[]; }; -ncdf_tools = derive { name="ncdf.tools"; version="0.7.1.291"; sha256="149d89kim67q77w17afc5x7hkvmk05gfkaw6cpl583j2zxingify"; depends=[RNetCDF chron abind plotrix raster RColorBrewer JBTools]; }; +ncdf_tools = derive { name="ncdf.tools"; version="0.7.1.295"; sha256="1jgxivmg2gzvkn09n13i5xr1v0xcyp5ckhwxz6g5kdh9z2dkjhc2"; depends=[RNetCDF chron abind plotrix raster RColorBrewer JBTools]; }; ncdf4 = derive { name="ncdf4"; version="1.13"; sha256="07s1lh5cg4fck7sapfka2skky70max1rfhimblnqf41phndxjcsv"; depends=[]; }; ncdf4_helpers = derive { name="ncdf4.helpers"; version="0.3-3"; sha256="051akd7r6zx805a0xwcs95q5sd8alag0f1gzqjk3n188q8r3ji5j"; depends=[ncdf4 PCICt abind]; }; ncf = derive { name="ncf"; version="1.1-5"; sha256="03nbmg9swxhpwrmfjsanp6fj5l2nw160sys70mj10a0ljlaf904z"; depends=[]; }; @@ -4740,12 +4827,12 @@ neariso = derive { name="neariso"; version="1.0"; sha256="1npfd5g5xqjpsm5hvhwy7y needy = derive { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; negenes = derive { name="negenes"; version="1.0-1"; sha256="0g8m3idjm24cf9b1wngw2pv1axgnv9mk5wqs78zgwvn0m67ypsiz"; depends=[]; }; neldermead = derive { name="neldermead"; version="1.0-10"; sha256="1snavf90yb12sydic7br749njbnfr0k7kk20fy677mg648sf73di"; depends=[optimbase optimsimplex]; }; -neotoma = derive { name="neotoma"; version="1.2-0"; sha256="0mb7b4qncn63nppq3hxl3a6hgipb413rygsm9qhira61ysnay51m"; depends=[RJSONIO RCurl plyr reshape2]; }; +neotoma = derive { name="neotoma"; version="1.3.0"; sha256="0a5fmas441zl479vfndgyhanp5iivzdp5zqrpnr3pvgf3wfdnppd"; depends=[RJSONIO RCurl plyr reshape2]; }; nephro = derive { name="nephro"; version="1.1"; sha256="06lxkk67n5whgc78vrr7gxvnrz38pxlsj4plj02zv9fwlzbb9h6p"; depends=[]; }; -nestedRanksTest = derive { name="nestedRanksTest"; version="0.1"; sha256="12pqxldyzy2i2gc575rx67zdfb8c9j0fv400nw509cwx5w6ya35x"; depends=[]; }; +nestedRanksTest = derive { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; }; netClass = derive { name="netClass"; version="1.2.1"; sha256="04yrj71l5p83rpwd0iaxdkhm49z9qp3h6b7rp9cgav244q060m9y"; depends=[kernlab Matrix ROCR igraph samr]; }; netassoc = derive { name="netassoc"; version="0.4.3"; sha256="153zgnmk9qjcxhfdy9g1fkgjx0vpyv55gmj4spk664igvw6kicf3"; depends=[igraph]; }; -netgen = derive { name="netgen"; version="1.0"; sha256="01j5s80k658wcp8ml2kyf10dvajp4crrxcad65rs03grak1q5mkv"; depends=[BBmisc mvtnorm lhs ggplot2 lpSolve checkmate]; }; +netgen = derive { name="netgen"; version="1.1"; sha256="0wbsssskhih6fyb0xfpnd3sjp25z8h0jyy3437ykgh7g24hh0i1z"; depends=[BBmisc mvtnorm lhs checkmate ggplot2 lpSolve igraph stringr]; }; netgsa = derive { name="netgsa"; version="2.0"; sha256="04id2wcrmi0lqvn4a8qhqkc3z076b8xd7jhw9hsmaz21g9cxdfx8"; depends=[cvTools corpcor glasso glmnet igraph]; }; netmeta = derive { name="netmeta"; version="0.7-0"; sha256="0nsy817bj3fh4sz632pljyjn7jphg9w389hhdcyjvkb7i43c9v5c"; depends=[meta magic]; }; nets = derive { name="nets"; version="0.1"; sha256="0zshiavdi1z8mq6q93vsyb5wx5nq37qln9gcyvamvi2pgy5xg4k2"; depends=[igraph]; }; @@ -4772,7 +4859,7 @@ nice = derive { name="nice"; version="0.4"; sha256="1alq8n8pchn9v0fvwrifdisazkh5 nicheROVER = derive { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; nlADG = derive { name="nlADG"; version="0.1-0"; sha256="0nvd5hzd1p81jwx5p7js86wblgg615vdnpbvy5rhmhf1ig583z1b"; depends=[ggm]; }; nlWaldTest = derive { name="nlWaldTest"; version="1.0.1"; sha256="1rwpkkddivpcamhsp22nmy5gz2006y9kbdzj8lhh20s1vsyhn2b3"; depends=[stringr numDeriv]; }; -nleqslv = derive { name="nleqslv"; version="2.7"; sha256="1livdnwrs8vzsbhvjqf3rmnanaywsr464jb6988s6pmyc2b0q9zp"; depends=[]; }; +nleqslv = derive { name="nleqslv"; version="2.8"; sha256="1jkf02mcz16d8h8b7h5m13lpx6z2shpap5vncapszwa9js6vps67"; depends=[]; }; nlme = derive { name="nlme"; version="3.1-120"; sha256="1ji8nrf714nf18by9g7k4czkgnj1cq464pvjv195c5fnhwhmpmjc"; depends=[lattice]; }; nlmeODE = derive { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve nlme lattice]; }; nlmeU = derive { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; @@ -4790,11 +4877,12 @@ nmcdr = derive { name="nmcdr"; version="0.3.0"; sha256="1557pdv7mqdjwpm6d9zw3zfb nnet = derive { name="nnet"; version="7.3-9"; sha256="1z1lhi35w5l7l645d764w9h4aiv6hapjv8fwb9b51b36vyg1r0zg"; depends=[]; }; nnlasso = derive { name="nnlasso"; version="0.2"; sha256="1q1psc6s5xw2nsz09q20n5rksq07gx21q9ap22dr7haln5jrvpzr"; depends=[]; }; nnls = derive { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; -nodeHarvest = derive { name="nodeHarvest"; version="0.6"; sha256="16151rwmqkf5vlyrlxlirz8s0nimxppx1f7f4pwfxi9vipwph125"; depends=[quadprog randomForest]; }; +nodeHarvest = derive { name="nodeHarvest"; version="0.7-2"; sha256="18lmp7mly3ad95yz2cv330bg7y9fwldvagnzvjx0zgsx81f3bncr"; depends=[quadprog randomForest]; }; nodiv = derive { name="nodiv"; version="1.0.3"; sha256="0fwx7f30qxfnhgzn5lrphwv0clvap3w887xf6316lbr86sjw4x3v"; depends=[picante raster ape sp vegan]; }; noia = derive { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; +nomclust = derive { name="nomclust"; version="0.91.1010"; sha256="02jpzcjclm22bjg59wj4490vh2rp9ma1vqxdnwmppyb478558fz1"; depends=[cluster dummies]; }; noncensus = derive { name="noncensus"; version="0.1"; sha256="0cfj17bfzddfshhhzv2ijhrp9ylcscmsysswjcsjfxmy3gbkd00q"; depends=[]; }; -nonlinearTseries = derive { name="nonlinearTseries"; version="0.2.1"; sha256="1pq93g25arnc68kyvv6ymywdvbqv6620dvqzv1l43c1xssw364bc"; depends=[Matrix rgl tseries TSA]; }; +nonlinearTseries = derive { name="nonlinearTseries"; version="0.2.2"; sha256="1p78a9nqn53v9r885p4lg47vqlryw7335pxrid191xqabxxs3ba7"; depends=[Matrix rgl tseries TSA Rcpp Rcpp]; }; nonnest2 = derive { name="nonnest2"; version="0.2"; sha256="0z2ihnhphf6c9cklj1l81kqgyz1h9wl2ziwx7s0ssn3dfgw4fnp7"; depends=[CompQuadForm mvtnorm sandwich]; }; nonparaeff = derive { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[lpSolve gdata Hmisc rms geometry psych pwt]; }; nonrandom = derive { name="nonrandom"; version="1.42"; sha256="0icm23hw593322z41wmjkwxqknh2pa9kpzbrch7xw1mhp93sd5ll"; depends=[lme4]; }; @@ -4809,6 +4897,7 @@ normwhn_test = derive { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40 nortest = derive { name="nortest"; version="1.0-3"; sha256="0kih1r703hjw2vha2hx13vm3fvbyra7v229khgv3hxxfppb7jis8"; depends=[]; }; nose = derive { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; notifyR = derive { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; +novelist = derive { name="novelist"; version="1.0"; sha256="0wzx0vkqvl9sfhbbrzylsxhm3qmjj5w8sy5w6gvd104fn84d49yk"; depends=[]; }; noweb = derive { name="noweb"; version="1.0-4"; sha256="17s65m1m8bj286l9m2h54a8j799xaqadwfrml11732f8vyrzb191"; depends=[]; }; np = derive { name="np"; version="0.60-2"; sha256="0zs1d4mmgns7s26qcplf9mlz9rkp6f9mv7abb0b9b2an23y6gmi5"; depends=[boot cubature]; }; npIntFactRep = derive { name="npIntFactRep"; version="1.2"; sha256="0fx5923wdzz6122bbyil5imwbhgwlm50wcrscy78qdx8n4n07rv8"; depends=[ez plyr]; }; @@ -4849,12 +4938,15 @@ obs_agree = derive { name="obs.agree"; version="1.0"; sha256="191xshnrncjqzwd2rd obsSens = derive { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; oc = derive { name="oc"; version="0.95"; sha256="1zmy34fsqcd4rq0v72r514k6gm3jmf9a5zv4m6kj09hl89xvqsci"; depends=[pscl]; }; occ = derive { name="occ"; version="1.0"; sha256="1rpgq6mqrdzz52ln897f5k8yyz5i14s3lxqmy3nwsxf3q2bdf3yh"; depends=[]; }; -oce = derive { name="oce"; version="0.9-14"; sha256="03vp83504pwjk6wbx5l4s31qvxfyd3g38snvfvp8b0pvnlv8f2fh"; depends=[mapproj]; }; +oce = derive { name="oce"; version="0.9-17"; sha256="0j1sj9qlcg0yrdhpqinrpaa8dv4d8c8hjl48028x75frsc784pip"; depends=[gsw]; }; ocean = derive { name="ocean"; version="0.2-4"; sha256="1554iixfbw3k6w9xh3hgbiygszqvj5ci431cfmnx48jm27h2alqg"; depends=[ncdf4 proj4]; }; -ocedata = derive { name="ocedata"; version="0.1.2"; sha256="0kic6m09a66zc5fxh9fkqk7rp3mnpf0p6i1qy2irh3bj9ccmdkvk"; depends=[]; }; +ocedata = derive { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; }; +odds_converter = derive { name="odds.converter"; version="1.1"; sha256="0x57hrb54pvk1prxl87yz3mwvxf3fxranzg706vdiwkcnjc4damm"; depends=[]; }; +odeintr = derive { name="odeintr"; version="1.3"; sha256="12y5hr6f7bj3aqj4gd0hlj495c5163jn0liksspk5jpqcmpsgdg3"; depends=[Rcpp Rcpp BH]; }; odfWeave = derive { name="odfWeave"; version="0.8.4"; sha256="1rp9j3snkkp0fqmkr6h6pxqd4cxkdfajgh4vlhpz56gr2l9j48q5"; depends=[lattice XML]; }; odfWeave_survey = derive { name="odfWeave.survey"; version="1.0"; sha256="0cz7dxh1x4aflvfrdzhi5j64ma5s19ma8fk9q2m086j11a1dw3jn"; depends=[odfWeave survey]; }; oem = derive { name="oem"; version="1.02.1"; sha256="0z9k0jhpp5dayyin6v8p26rgl8s983hnpsk195c9z458i7nbmrpd"; depends=[Rcpp Rcpp RcppArmadillo]; }; +oglmx = derive { name="oglmx"; version="1.0.2"; sha256="1yln1ysk19mxnb0aq74xgqj0qqipqg3qbczyhdygakjd4v4ndvhg"; depends=[maxLik]; }; okmesonet = derive { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; omd = derive { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; oncomodel = derive { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; @@ -4871,11 +4963,12 @@ openintro = derive { name="openintro"; version="1.4"; sha256="1k6pzlsrqikbri795v openssl = derive { name="openssl"; version="0.4"; sha256="1gfhzxjjssid2z8xmw3vnnd4gj2f6a3zzazkhpg9b1ymmcp9b288"; depends=[]; }; opentraj = derive { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[plyr maptools openair raster rgdal reshape doParallel foreach sp]; }; openxlsx = derive { name="openxlsx"; version="2.4.0"; sha256="1jzq3lz9qivsprmn8aibwiidcwsanlnfpmsz2ccw3650gdgk3zdk"; depends=[Rcpp Rcpp]; }; -operator_tools = derive { name="operator.tools"; version="1.3.0"; sha256="0y5f0ifj4gaq03gm44vdvslcs7lglk1p8kq47mdc0gc1yfa6l00c"; depends=[]; }; +operator_tools = derive { name="operator.tools"; version="1.4.4"; sha256="1ridxi3pbylb4flfgn371n1v9796rnd1ndxhh6ijyzpysqqmwi08"; depends=[]; }; operators = derive { name="operators"; version="0.1-7"; sha256="1qik9ihv5blz77bzsnrslf665ndpa8vp3xldqsgvs4gr5bg5algw"; depends=[]; }; ops = derive { name="ops"; version="1.0"; sha256="0cvwyn5sz5lx8sin8w4k8ymslfl4nfaa012a9vcl2hvp4850rk25"; depends=[]; }; optAUC = derive { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; }; optBiomarker = derive { name="optBiomarker"; version="1.0-27"; sha256="1kkj602d4klwyd8kylawgfysg8dlp2g6j7afkppzv5x8mbhs5ji4"; depends=[rpanel rgl MASS randomForest e1071 ipred msm Matrix]; }; +optCluster = derive { name="optCluster"; version="1.0.0"; sha256="1qpymgdy4pcl5isz88m2bb734c2c2qlh77c0i8c1wy4hkrx5ndpl"; depends=[clValid RankAggreg mclust cluster gplots kohonen MBCluster_Seq]; }; optR = derive { name="optR"; version="1.1.1"; sha256="1lr5n0g21jayb27b2j8zh16f1k28avzg7k2mwyc7rjhhxv8k9w1j"; depends=[]; }; optextras = derive { name="optextras"; version="2013-10.28"; sha256="1sm025xwrpm5c63l4kiqfndxb7rwq2bcmidy4k2b24g5a8x7cpfv"; depends=[numDeriv]; }; optiRum = derive { name="optiRum"; version="0.35"; sha256="0hfby5791jmzpacd8a4jj45b6sr5fph9g24kv6sr9db35y07ca36"; depends=[data_table ggplot2 AUC knitr plyr scales stringr XML]; }; @@ -4894,11 +4987,12 @@ orca = derive { name="orca"; version="1.1"; sha256="138qqjklwd3g4dfg9j2438kzpsdc orclus = derive { name="orclus"; version="0.2-5"; sha256="0kkxhyqjxib862npinzf3mipqg5imgscdmb5wqm8wf2j2mbislsx"; depends=[]; }; orcutt = derive { name="orcutt"; version="1.1"; sha256="0hz7aw4jpf4l7ihj4bjnjv1m8ynr71n4l12x046qj8y7mrnl9p4k"; depends=[]; }; ordBTL = derive { name="ordBTL"; version="0.8"; sha256="09x3zfmss4fsh3rjghgmpv8y34dnkz4mw696b3k3nvlgk55a1423"; depends=[caret VGAM wikibooks gtools]; }; -ordPens = derive { name="ordPens"; version="0.2-1"; sha256="1kcxjfr2ncnqg293ph509hpgzzn5s4ih2kd8agl335zlxcksz3fp"; depends=[grplasso mgcv RLRsim]; }; +ordPens = derive { name="ordPens"; version="0.3-1"; sha256="0yzf3qzi4p7xqimihjvr0wkdvj3sy9n3wc86bf4bjbavniq6m69r"; depends=[grplasso mgcv RLRsim]; }; orddom = derive { name="orddom"; version="3.1"; sha256="165axs15fvwhrp89xd87l81q3h2qjll1vrwcsap645cwvb85nwsh"; depends=[psych]; }; orderbook = derive { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[lattice hash]; }; orderedLasso = derive { name="orderedLasso"; version="1.7"; sha256="0vrh89nrmpi8xscvambcb1y70gqqi5819a2gxh02h4pnyjn8axql"; depends=[Matrix Iso quadprog ggplot2 reshape2]; }; ordinal = derive { name="ordinal"; version="2015.1-21"; sha256="1vhkxdsapmah09vzy6xd00kb1ck02vbiyamv5ccflxdbdmch1q1y"; depends=[ucminf MASS Matrix]; }; +ordinalCont = derive { name="ordinalCont"; version="0.4"; sha256="1inms74l4zx6r526xd0v79v18bcqa76xwsgfvap0fizyv2dvgpim"; depends=[fastGHQuad boot ucminf]; }; ordinalgmifs = derive { name="ordinalgmifs"; version="1.0.2"; sha256="1rbn2mb516hdr0chny1849m1aq0vb0vmr636b4fp914l5zh75vgi"; depends=[]; }; ore = derive { name="ore"; version="1.1.0"; sha256="1khgjd5fl8vi9n9pj4nbai6fbfbiwzc121a0gf7dfk727iid8whq"; depends=[]; }; orgR = derive { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[ggthemes ggplot2 lubridate data_table stringr]; }; @@ -4931,7 +5025,7 @@ pacbpred = derive { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idx pack = derive { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; packClassic = derive { name="packClassic"; version="0.5.2"; sha256="04a1sg9vx3r0sq54q9kj0kpahp6my246jy3bivgy09g5fjk0dmkj"; depends=[]; }; packHV = derive { name="packHV"; version="1.8"; sha256="0dr2picjd7mm633vw29524f3n4jpyillpzi9cg7yc2cymxnrgvyg"; depends=[survival WriteXLS]; }; -packS4 = derive { name="packS4"; version="0.9.1"; sha256="01kkw5g3xcn9hhfglmfvwsryid0w4vw9azh6as8l8d5i1xjyp9k7"; depends=[]; }; +packS4 = derive { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; }; packdep = derive { name="packdep"; version="0.3.1"; sha256="1827h9xcvgdad9nwz9k3hi79jc33yr7dnxy4xn2frp3fdh4q81ll"; depends=[igraph]; }; packrat = derive { name="packrat"; version="0.4.3"; sha256="0sfv7vl9afvv2rpqk39hbrvhq6z54ilqjrff4j3parsfqvg7gaqf"; depends=[]; }; pacman = derive { name="pacman"; version="0.3.0"; sha256="10fjkr4zjcx7cyfmnpdnb96swxizhdqhvzgb5crymrafxqvg00c7"; depends=[devtools]; }; @@ -4948,21 +5042,25 @@ paleobioDB = derive { name="paleobioDB"; version="0.3"; sha256="1vcfssi6w0m2wd2s paleofire = derive { name="paleofire"; version="1.1.6"; sha256="1fzmnc4ywhqb6sr3cclsqy6y9v27j69bxszlrrgbnqb0kyg28rd7"; depends=[GCD locfit raster ggplot2 plyr rgdal lattice]; }; paleotree = derive { name="paleotree"; version="2.4"; sha256="1rrsxll5qcvr9a96wg5bdljvyy7zy26zd9f0b17xswmp77gxmahb"; depends=[ape phangorn]; }; palinsol = derive { name="palinsol"; version="0.92"; sha256="1jxy3qx8w1r8jwgdavf37gqjjqpizdqk218xcc7b77xi8w52vxpg"; depends=[gsl]; }; +palr = derive { name="palr"; version="0.0-4"; sha256="0rcb01lpi8zapnml1spx4ixxwbq9qh42sisqzrg7gxrkcjrbqxgl"; depends=[]; }; pamctdp = derive { name="pamctdp"; version="0.3.1"; sha256="1fnadgfd2ikis49j9zl2ijj8gim8lpbygwxjj6ri9jyrc1qmj9jb"; depends=[ade4 xtable FactoClass]; }; pamm = derive { name="pamm"; version="0.7"; sha256="02py4zcymmwnlpsvha5cgc4ik8fp0gbsg86s5q7z5fl3ma3g669j"; depends=[lme4 mvtnorm gmodels]; }; pampe = derive { name="pampe"; version="1.1.1"; sha256="1ha4jbmi2j35i375ziv4rbs4rijlp6fxwvb0vfr2905d1vl3cbap"; depends=[leaps]; }; pamr = derive { name="pamr"; version="1.55"; sha256="1hy3khb0gikdr3vpjz0s245m5zang1vq8k93g7n9fq3sjfa034gd"; depends=[cluster survival]; }; pan = derive { name="pan"; version="1.3"; sha256="08g0arwwkj9smkzyh6aicfrqvknag3n2xl55f7q7ghj09fhwg1br"; depends=[]; }; -pander = derive { name="pander"; version="0.5.1"; sha256="0m95vnrzw9v4cq52kn3a605gbk1qd24ivh7aywhk1lh0imlk7i85"; depends=[digest Rcpp Rcpp]; }; +pander = derive { name="pander"; version="0.5.2"; sha256="0zs2c00dr0vph9d4par3zcisnyqa98rqym8fpya02ka28qajjiia"; depends=[digest Rcpp Rcpp]; }; panelAR = derive { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; panelaggregation = derive { name="panelaggregation"; version="0.1"; sha256="19426hab4rvgn8k2c7x327k4ymihas59jbys0nmrfgg074x0xdnm"; depends=[data_table]; }; +papeR = derive { name="papeR"; version="0.6-1"; sha256="1h3mfapn31qphaly01j5pw2ci65g4z0wh4m1wf5r808cspn0mya0"; depends=[car gmodels]; }; parallelMCMCcombine = derive { name="parallelMCMCcombine"; version="1.0"; sha256="05krkd643awqhfrylq9lxr2cmgvnm1msn2x8p1l1483n2gzyklz7"; depends=[mvtnorm]; }; -parallelMap = derive { name="parallelMap"; version="1.2"; sha256="1rd4q644xml29nj4mybgh8cr0h4wsadsf2wlyzppx5hg5yi27ff2"; depends=[BBmisc checkmate]; }; +parallelMap = derive { name="parallelMap"; version="1.3"; sha256="026d018fr2a43cbh8bi2dklzr9fxjzdw5qyq84g2i18v5ibr6bd5"; depends=[BBmisc checkmate]; }; +parallelSVM = derive { name="parallelSVM"; version="0.1-8"; sha256="19hmagv95nx8aw8xylk5vvpxw9a4fsa68r9q0x6irhq50wmah93r"; depends=[e1071 foreach doParallel]; }; parallelize_dynamic = derive { name="parallelize.dynamic"; version="0.9-1"; sha256="03zypcvk1iwkgy6dmd5bxg3h2bqvjikxrbzw676804zi6y49mhln"; depends=[]; }; paramlink = derive { name="paramlink"; version="0.9-6"; sha256="0pazllkjbqzvl9vmpvr67lkcsd960mipcd1p1nf00y8hknrwh7qp"; depends=[kinship2 maxLik]; }; paran = derive { name="paran"; version="1.5.1"; sha256="0nvgk01z2vypk5bawkd6pp0pnbgb54ljy0p8sc47c8ibk242ljqk"; depends=[MASS]; }; parboost = derive { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[mboost party iterators plyr caret glmnet doParallel]; }; parcor = derive { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[MASS glmnet ppls Epi GeneNet]; }; +parfm = derive { name="parfm"; version="2.5.8"; sha256="05bzmm5ahaip5apsv84fbqy8bag9pkkfsxvqw1cbcvlbr2zyxfgp"; depends=[survival eha msm]; }; parfossil = derive { name="parfossil"; version="0.2.0"; sha256="12gsc5n4ycvhzxvq5j0r3jnnrzw1q412dbvmakipyw2yx2l2s7jn"; depends=[fossil foreach]; }; parma = derive { name="parma"; version="1.5-1"; sha256="0qrq3bx0amri9b3s6bym4znnk140jjd2abnvqyihaj4bf2glbl0g"; depends=[nloptr slam Rglpk quadprog FRAPO corpcor]; }; parmigene = derive { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; }; @@ -4973,14 +5071,15 @@ partialOR = derive { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpx partitionMap = derive { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; partitions = derive { name="partitions"; version="1.9-15"; sha256="0jgpknm4zah50w9i3fbq2f1whm4hywm2j72vxc3ignx1snx2z0gs"; depends=[gmp polynom]; }; +partools = derive { name="partools"; version="1.0.1"; sha256="0id6fw582ag0zwkp0yjm5vfcd2gv1bsa3zzhfx2fgiaarhnhzmda"; depends=[]; }; partsm = derive { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; -party = derive { name="party"; version="1.0-20"; sha256="10d4hyzc8icgb51k4dkc1bwprky7sg35vpa9s3jcl9ifw6na0bgm"; depends=[mvtnorm modeltools strucchange survival coin zoo sandwich mvtnorm]; }; +party = derive { name="party"; version="1.0-21"; sha256="10kk3mw9kbkzhh5qacmq404d1r0scin2vc33wsf152lgc9fhs1xx"; depends=[mvtnorm modeltools strucchange survival coin zoo sandwich mvtnorm]; }; partykit = derive { name="partykit"; version="1.0-1"; sha256="12ja72nginkzl9zrpiidqwrih2zgwxksdkhbw7hbdjbsr4zb7q62"; depends=[survival]; }; parviol = derive { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; pass = derive { name="pass"; version="1.0"; sha256="00dzwg2lnzmrrmzq3fyrs4axswgnsn7f62l2f2a8d8gyf8qzz3nf"; depends=[MASS lars ncvreg]; }; pastecs = derive { name="pastecs"; version="1.3-18"; sha256="0ixlnc1psgqgm71bsf5z5j65lvr92ghpsk9f1ifm94dzjhi6d22i"; depends=[boot]; }; pastis = derive { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[caper ape]; }; -patchDVI = derive { name="patchDVI"; version="1.9.1601"; sha256="0vv1rmmd78n2r14dsl9fx25v6ym9mav557ya0aagr548wqcajf0m"; depends=[]; }; +patchDVI = derive { name="patchDVI"; version="1.9.1616"; sha256="1akdlzw8v2p1zz09bm88d63jyxj7fv5h50p459p9ml4yc816xvji"; depends=[]; }; patchPlot = derive { name="patchPlot"; version="0.1.5"; sha256="1b4k0dvvj6qwyxbqb36knyrawvy5qq8hl45pz896c9rkqhlg02bx"; depends=[datautils]; }; patchSynctex = derive { name="patchSynctex"; version="0.1-2"; sha256="1ssjs4mcsjad7g0yfi5sxwfyywsziry81rzwb4sly3afw8g538p9"; depends=[stringr]; }; pathClass = derive { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[svmpath kernlab ROCR igraph lpSolve]; }; @@ -4988,7 +5087,7 @@ pathdiagram = derive { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95 pathmox = derive { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; }; pathological = derive { name="pathological"; version="0.0-6"; sha256="1a6a9q15nk8rcpyz5xpndq0gbdv7y2iq4jgqiv7sgd3j1agh26c6"; depends=[assertive plyr stringr]; }; pauwels2014 = derive { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; -pavo = derive { name="pavo"; version="0.5-1"; sha256="189kshc5dm02qv0rm1dlcxrhvga4yhlkn3yyj3rjhmrags4rmwcb"; depends=[rgl rcdd mapproj geometry]; }; +pavo = derive { name="pavo"; version="0.5-2"; sha256="13iy9dmg19v0gqg12224ci0zq8fa0ap2i0is8v0rkfp19wzy0ryg"; depends=[rgl geometry mapproj rcdd]; }; pawacc = derive { name="pawacc"; version="1.2.1"; sha256="1l2wn69ynr5mza04a5mmzwzigqac8k9xkiaw7sdqv5hn9y7x3sj9"; depends=[SparseM]; }; pbapply = derive { name="pbapply"; version="1.1-1"; sha256="1dshpnnmq1g2v223qy7pgbxydy9sqj04zwqxvzylm4mqc91ks4n2"; depends=[]; }; pbatR = derive { name="pbatR"; version="2.2-9"; sha256="1p8rj0lzm4pp1svgy7xia2sclkngzfjbgbikq94s6v92d582wncw"; depends=[survival rootSolve]; }; @@ -5005,14 +5104,15 @@ pbo = derive { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf pbs = derive { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; pcIRT = derive { name="pcIRT"; version="0.1"; sha256="0vfbbmnp4jyrbi5d9gz1krh707aazbrqfcgc3rjrwwyjld11wyzn"; depends=[combinat]; }; pca3d = derive { name="pca3d"; version="0.3"; sha256="01nc4p68r7bnly18q8rkhnnj6vq9mwbb5hhdcblan6nhhlzhnld0"; depends=[rgl]; }; +pcaBootPlot = derive { name="pcaBootPlot"; version="0.1.0"; sha256="0h5i5qh4lhnhh7n9k1map10gvw70f7576gnxhjjc6l03sngm0yp7"; depends=[RColorBrewer]; }; pcaL1 = derive { name="pcaL1"; version="1.3"; sha256="026cgi812kvbkmaryd3lyqnb1m78i3ql2phlvsd2r691y1j8w532"; depends=[]; }; pcaPP = derive { name="pcaPP"; version="1.9-60"; sha256="1rqq4zgik7cgnnnm8il1rxamp6q9isznac8fhryfsfdcawclfjws"; depends=[mvtnorm]; }; -pcalg = derive { name="pcalg"; version="2.0-10"; sha256="1ph5n3hlxni039phvhr9r2nj62c4mw9zmf0857sqzv434hizdfzi"; depends=[abind igraph ggm corpcor robustbase vcd Rcpp bdsmatrix sfsmisc Rcpp RcppArmadillo BH]; }; +pcalg = derive { name="pcalg"; version="2.2-0"; sha256="1cgir5h9g8v3kjmdqnnjsc0z1f8wl3flnnxnk9y7km82x5pby0m7"; depends=[abind igraph ggm corpcor robustbase vcd Rcpp bdsmatrix sfsmisc fastICA clue gmp Rcpp RcppArmadillo BH]; }; pcg = derive { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; -pcnetmeta = derive { name="pcnetmeta"; version="2.1"; sha256="00vrlkzc6d5xgs4my8qr6f9skyjdi3i529i9sfmdcwwrwp2spr24"; depends=[rjags coda]; }; +pcnetmeta = derive { name="pcnetmeta"; version="2.2.1"; sha256="0y4sn1aby38c458667fsy2ndq64i8kknmzdc32mbvzd530p1yxai"; depends=[rjags coda]; }; pcrcoal = derive { name="pcrcoal"; version="1.1"; sha256="17mm13xpmghachiqr7v2691jk39mbfsadpg028gs3iiwmh0pksa0"; depends=[ape ggplot2 phylosim]; }; pcse = derive { name="pcse"; version="1.9"; sha256="04vprsvcmv1ivxqrrvd1f8ifg493byncqvmr84fmc0jw5m9jrk3j"; depends=[]; }; -pdR = derive { name="pdR"; version="1.2"; sha256="0dgw6i623a6w18q54b46fnbp38941hqdvjpcnxrbqwvcgk024pr6"; depends=[]; }; +pdR = derive { name="pdR"; version="1.3"; sha256="0y81nlvq5vwf6021m5ns6j4l44c5456jkbs2x9y7jfkw6r3v2ddf"; depends=[]; }; pdc = derive { name="pdc"; version="1.0.2"; sha256="0d7p65rkwrh39njhszdrbv25z4jz27746y1qyhqmhkxmvkx6g1fl"; depends=[]; }; pdfCluster = derive { name="pdfCluster"; version="1.0-2"; sha256="0kbci54dlzn736835fh18xnf2pmzqrdmwa3jim29xcnwa1r2gklb"; depends=[geometry]; }; pdfetch = derive { name="pdfetch"; version="0.1.6"; sha256="1j3fdjnmfj84pfd5bc37ssbs83ya3ma0hj5iy1a0bg9wb5xqap13"; depends=[httr zoo xts XML lubridate jsonlite reshape2]; }; @@ -5026,8 +5126,8 @@ pedantics = derive { name="pedantics"; version="1.5"; sha256="0m5jxzkf1pf657q2kl pedgene = derive { name="pedgene"; version="2.1"; sha256="0nmp1s0i5b4h45p3f4rvvixjz8sgv56as3c85rvv3a8xwfd1gcxq"; depends=[Matrix CompQuadForm survey kinship2]; }; pedigree = derive { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[Matrix HaploSim reshape]; }; pedigreemm = derive { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; -pedometrics = derive { name="pedometrics"; version="0.4-1"; sha256="0pzkkjp126g64q6avlk7bqrhcl6y5zz8vmfrq68k4yck34c1gn16"; depends=[car fields gstat lattice latticeExtra MASS moments plyr pbapply Rcpp sp spsurvey xtable Rcpp]; }; -pegas = derive { name="pegas"; version="0.7"; sha256="1vhlg40jz938h63isi5c8cjfqrwnh5miyl5kg2hbybw9awlp6gjj"; depends=[ape adegenet]; }; +pedometrics = derive { name="pedometrics"; version="0.6-2"; sha256="137685gyd7k9vpjnsy6h280cdbl15bchrizfnalnz6nizi0q85lj"; depends=[car gstat Hmisc lattice latticeExtra MASS moments plyr pbapply Rcpp sp spsurvey xtable Rcpp]; }; +pegas = derive { name="pegas"; version="0.8"; sha256="0074r6vsnvdc0gkqhb3cb4dybpgp4ryf38lrfkk8vrs3y9gb7hdh"; depends=[ape adegenet]; }; penDvine = derive { name="penDvine"; version="0.2.2"; sha256="054vw99z68pk0bi4yzdmvx13x8n75sj2371l8w2yady1lqjj4qi7"; depends=[lattice quadprog TSP fda Matrix]; }; penMSM = derive { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp Rcpp]; }; penalized = derive { name="penalized"; version="0.9-45"; sha256="0svmhsh0lv3d571jyhk73zd9slcd6xnp3p0l1ijab9gl2rjhlzz5"; depends=[survival]; }; @@ -5045,14 +5145,15 @@ performanceEstimation = derive { name="performanceEstimation"; version="1.0.0"; perm = derive { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; }; permGPU = derive { name="permGPU"; version="0.14.6"; sha256="1h01nfq8hn7i29xanma70q6s5mj83znbb2lg9x7bjgdrgj38vy2m"; depends=[RUnit foreach survival]; }; permtest = derive { name="permtest"; version="1.2"; sha256="1sciyjs840h004zg8bwclq0j0n22anvjvx3fz62y4dzblrynhrci"; depends=[]; }; -permute = derive { name="permute"; version="0.8-3"; sha256="0zc3b3cl7q7y9pglc690ldg6p7bl7d1h7xkwnqqmvrpn7cq29rdb"; depends=[]; }; +permute = derive { name="permute"; version="0.8-4"; sha256="1z5pmq9dy93rpsdb73waqrqmnvvi9ygx1v5l81a2n1j1kb4lmksv"; depends=[]; }; perry = derive { name="perry"; version="0.2.0"; sha256="1lfmcq2xsxmfs7cxvhgxcsggslgjicbaks4wcjw1yjh67n559j46"; depends=[ggplot2 robustbase]; }; persiandictionary = derive { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; }; +perspectev = derive { name="perspectev"; version="1.0"; sha256="1qqhja7vqji9313dxxy1a9a50h5zxwxgc5s16lssczjachkqaibk"; depends=[ggplot2 foreach ape doParallel mapproj boot sp]; }; perturb = derive { name="perturb"; version="2.05"; sha256="18ydmmp8aq4rf9834dmsr4fr9r07zyn97v8a1jqz3g9njza983la"; depends=[]; }; pesticides = derive { name="pesticides"; version="0.1"; sha256="1w180hqqav0mh9sr9djj94sf55fzh4r373a7h08a2nz9nyjpq09w"; depends=[]; }; pez = derive { name="pez"; version="1.0-0"; sha256="0d1npc2w6gzi4ki7gwqa0f4sklz0sml8q0cmgb77hpvgrny47mk3"; depends=[ape caper picante quantreg mvtnorm vegan ade4 apTreeshape FD plotrix Matrix]; }; pgam = derive { name="pgam"; version="0.4.12"; sha256="0vhac2mysd053bswy3xwpiz0q0qh260hziw6bygpf83vkj94qf2v"; depends=[]; }; -pgirmess = derive { name="pgirmess"; version="1.6.0"; sha256="0b2sxk2q4cylsb5ch9bq1grdifp2sww7bv1bgl9zn0j6h611gif5"; depends=[boot nlme rgdal sp spdep splancs]; }; +pgirmess = derive { name="pgirmess"; version="1.6.2"; sha256="02i2jp345hyzz0s3rfxn3rpx0yl1aw6r0r0zaw471j5l9m6s85kw"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; pglm = derive { name="pglm"; version="0.1-2"; sha256="1arn2gf0bkg0s59a96hyhrm7adw66d33qs2al2s0ghln6fyk8674"; depends=[maxLik plm statmod]; }; pgmm = derive { name="pgmm"; version="1.2"; sha256="0f0wdcirjyxzg2139c055i035qzmhm01yvf97nrhp69h4hpynb2n"; depends=[]; }; pgs = derive { name="pgs"; version="0.4-0"; sha256="1zf5sjn662sds3h06zk5p4g71qnpwp5yhw1dkjzs1rs48pxmagrx"; depends=[gsl R2Cuba]; }; @@ -5079,7 +5180,7 @@ phylin = derive { name="phylin"; version="1.0"; sha256="10pbs4adsyp43i89jb3xi0m5 phyloTop = derive { name="phyloTop"; version="1.1.1"; sha256="046myyr01c4zc6sfy7r6p2vswkqqqd3w4k173gjbjazl1ims1sjs"; depends=[phylobase NHPoisson ape igraph]; }; phylobase = derive { name="phylobase"; version="0.6.8"; sha256="0xj7x4cdfp0yadvjhdkw1ai3yd081ri4gpdg0n5g0z13cjaa6mjh"; depends=[ade4 ape Rcpp Rcpp]; }; phyloclim = derive { name="phyloclim"; version="0.9-4"; sha256="0ngg8x192lrhd75rr6qbh72pqijbrhrpizl27q0vr6hp7n9ch3zx"; depends=[ape raster]; }; -phylocurve = derive { name="phylocurve"; version="1.0.0"; sha256="13gfavzkkicqcmdxfh9779a81kjgffskchqm0ygqkwhy9afnsxwr"; depends=[ape geiger phytools abind phylolm]; }; +phylocurve = derive { name="phylocurve"; version="1.1.0"; sha256="03jvq9cdbch860910qjwg16y7h8jq9zn0iaak9daza65arch8fv0"; depends=[drc ape geiger phytools abind phylolm GPfit dtw]; }; phyloland = derive { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; }; phylolm = derive { name="phylolm"; version="2.2"; sha256="1x1mi1mcq3ijbqhr0951scqzv4zza0r3fcs0hh4gpbr8z49b6d98"; depends=[ape]; }; phylosim = derive { name="phylosim"; version="2.1.1"; sha256="0rrz5c7zl2hjalwm6m8pydikiwmiq2dybx2yhzp0ps2bcsn02lhn"; depends=[R_oo ape compoisson ggplot2 R_methodsS3]; }; @@ -5092,7 +5193,7 @@ pi0 = derive { name="pi0"; version="1.3-250"; sha256="1561zvf1hcd05iqy245c0z23mi picante = derive { name="picante"; version="1.6-2"; sha256="1zxpd8kh3ay6f3gdqkij1a6vnkr98dc1jib2r6br2kjyzshabcsd"; depends=[ape vegan nlme]; }; picasso = derive { name="picasso"; version="0.3.0"; sha256="0z314akr1x2a28hh5hbb7mzkyaxsj4dfkdmx10l6gqllgk9j5qca"; depends=[lattice igraph MASS Matrix]; }; pingr = derive { name="pingr"; version="1.1.0"; sha256="0j03qcsyckv3zh2v4m8wz8kyfl0k8qi71rm20rc0spy1s9ng7fcb"; depends=[]; }; -pipe_design = derive { name="pipe.design"; version="0.1"; sha256="0hy3n15b4a2319xn2gix9vca3qryy7hjsxlh0z8k96l24ql0r62z"; depends=[ggplot2 gtools]; }; +pipe_design = derive { name="pipe.design"; version="0.2"; sha256="1hmc4g3bnpwicjr53xz8yhhshnfhd2fqx9c6v4af8wvnqpy7mlpq"; depends=[ggplot2 gtools]; }; pipeR = derive { name="pipeR"; version="0.6"; sha256="15hq6i1cv072jpw71slij534s85xljkjk2ygxpkgq3cyngbq3jxb"; depends=[]; }; pitchRx = derive { name="pitchRx"; version="1.7"; sha256="0mx948bahw0zr0915hz9lcws7iq2l0ikgx4gjnnfhhpiii86xs57"; depends=[ggplot2 XML2R plyr MASS hexbin mgcv]; }; pixmap = derive { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; @@ -5120,17 +5221,17 @@ plotKML = derive { name="plotKML"; version="0.5-2"; sha256="006f6j3k2yb20zcmx2lq plotMCMC = derive { name="plotMCMC"; version="2.0-0"; sha256="0i4kcx6cpqjd6i16w3i8s34siw44qigca2jbk98b9ligbi65qnqb"; depends=[coda gplots lattice]; }; plotROC = derive { name="plotROC"; version="1.3.3"; sha256="090fpj3b5vp0r2zrn38yxiy205mk9kx1fpwp0g8rl4bsa88v4c9y"; depends=[ggplot2 gridSVG shiny]; }; plotSEMM = derive { name="plotSEMM"; version="2.0"; sha256="0n30m1nz9fnilbgxg5jcmx2bsscdvz5mkjkyrgx7yr3alazkaimd"; depends=[plyr shiny MplusAutomation Rcpp plotrix Rcpp]; }; -plotmo = derive { name="plotmo"; version="3.1.0"; sha256="1z735ks92d1gfx6hk29mnj18a9hpsmifjy8qgh5lv9z0mwd7igca"; depends=[plotrix TeachingDemos]; }; +plotmo = derive { name="plotmo"; version="3.1.1"; sha256="08vl41an94l3f7hkd2lzpqgzxsp4wyh24lnay3lpmc3ra2ycpbmg"; depends=[plotrix TeachingDemos]; }; plotpc = derive { name="plotpc"; version="1.0.3"; sha256="0dw9k702a67c2k77dl4k2747lhsr84x41qrgj5mp9jnyfq6naciq"; depends=[]; }; -plotrix = derive { name="plotrix"; version="3.5-11"; sha256="01vb3i7hkc3krvl9v4f8fnpfcv62p4ci2vbm2qs5w593h70bys7c"; depends=[]; }; +plotrix = derive { name="plotrix"; version="3.5-12"; sha256="13gffp7zp46wal83609652x48i63zb5i20x6ycmgc97l4nanhrfi"; depends=[]; }; pls = derive { name="pls"; version="2.4-3"; sha256="114ka4766x8fx0zvvr7cylky1jsy542nj6s7sb2dwv8zjhbclkhn"; depends=[]; }; plsRbeta = derive { name="plsRbeta"; version="0.2.0"; sha256="1b8yldz5nzw3gilv9wk79bxcqb0hrgsxi2cn6qlby5nf9b4zmzv8"; depends=[mvtnorm boot Formula plsdof MASS betareg plsRglm]; }; plsRcox = derive { name="plsRcox"; version="1.7.2"; sha256="1c3ll13m27ndwlc9r79ilzl0i6cyp870x66swlbg6387whf7wn2r"; depends=[survival plsRglm lars pls kernlab mixOmics risksetROC survAUC rms]; }; plsRglm = derive { name="plsRglm"; version="1.1.1"; sha256="1bx1pl1pv47z3yj3ngkd97j10v2h8jqiybcqbm3kvqhgqydm07rp"; depends=[mvtnorm boot bipartite car]; }; plsdepot = derive { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; plsdof = derive { name="plsdof"; version="0.2-7"; sha256="1z8z9m0nsnyy1fipzvm1srpxn3q6wjrlivmmki1f8plwkixkyc5y"; depends=[MASS]; }; -plsgenomics = derive { name="plsgenomics"; version="1.3"; sha256="0gzk7sgv6bqkay7j854xsmyr3vwsdb2dbcnffv1ygdxikj64icp4"; depends=[MASS boot]; }; -plspm = derive { name="plspm"; version="0.4.2"; sha256="0q7mx5ydw61z1qcs0flpwpnnrcwsfsh3razc8jnd4z1xn96i3x85"; depends=[amap diagram tester turner]; }; +plsgenomics = derive { name="plsgenomics"; version="1.3-1"; sha256="0vddhzqfix8q692mdls227m2l6zjzbjwp1ia5j9shy71ycg2fzn9"; depends=[MASS boot]; }; +plspm = derive { name="plspm"; version="0.4.7"; sha256="0iy4qw4zjgqxg93a827qjcm32yipmnrl4gzn4hmskjd4khm9ngwd"; depends=[tester turner diagram shape amap]; }; plugdensity = derive { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; plumbr = derive { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj3zq92q1w8vszvyf6fw75j5rfwdaibk"; depends=[objectSignals]; }; plus = derive { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; }; @@ -5142,7 +5243,7 @@ pmg = derive { name="pmg"; version="0.9-43"; sha256="0i7d50m4w7p8ipyx2d3qmc54aiq pmlr = derive { name="pmlr"; version="1.0"; sha256="1z3hbw4wabpai1q8kbn77nzxqziag8y04cidlfiw7z969s4pkmgl"; depends=[]; }; pmml = derive { name="pmml"; version="1.4.2"; sha256="0588sph67zs58knf4g3fd7c84i2yag81igr882jgbaxhfhxrpk6n"; depends=[XML survival]; }; pmmlTransformations = derive { name="pmmlTransformations"; version="1.2.2"; sha256="1p31lakhqwk0qhb565j2sjcfsjsx0i5v8kj8779ryjyvy7717m6m"; depends=[]; }; -pmr = derive { name="pmr"; version="1.2.4"; sha256="15yrh533rj5i728nvcpjj3m5wa3jbspnfj941px3mf11h14npxpp"; depends=[]; }; +pmr = derive { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; png = derive { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; pnmtrem = derive { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; pnn = derive { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; }; @@ -5152,7 +5253,7 @@ pogit = derive { name="pogit"; version="1.0.0"; sha256="0lgvf4d7b2ycz9wryjrd7qym poibin = derive { name="poibin"; version="1.2"; sha256="12dm1kdalbqy8k7dfldf89v6zw6nd0f73gcdx32xbmry2l2976sa"; depends=[]; }; poilog = derive { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; pointRes = derive { name="pointRes"; version="1.0.2"; sha256="1q9vjvmxs1f5g8f2aj674wk8piqzjqxzdrvxnawgw1pfi66adnms"; depends=[ggplot2 gridExtra plyr TripleR]; }; -pointdensityP = derive { name="pointdensityP"; version="0.1"; sha256="1wa10sp0pxcjyicifz638f89b7ynsy7718qbh2p2gn66lbvjpkhr"; depends=[]; }; +pointdensityP = derive { name="pointdensityP"; version="0.2.1"; sha256="013vamdh987w56bmz0m6j2xas4ycv1zwxs860rs5z4i55dhgf9kh"; depends=[]; }; poisDoubleSamp = derive { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp Rcpp]; }; poisson_glm_mix = derive { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; }; poistweedie = derive { name="poistweedie"; version="1.0"; sha256="18992fafypds3qsb52c09fasm3hzlyh5zya6cw32wnhipmda643m"; depends=[]; }; @@ -5164,14 +5265,14 @@ polySegratio = derive { name="polySegratio"; version="0.2-4"; sha256="05kvj475zh polySegratioMM = derive { name="polySegratioMM"; version="0.6-3"; sha256="1y4kzb1p3aw7ng8mv1hszpvb5hwwxy4vg34mhhk705ki4jy8jgvp"; depends=[polySegratio gtools coda lattice]; }; polyaAeppli = derive { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; polyapost = derive { name="polyapost"; version="1.1-6"; sha256="1wk85nl2p9plnaavjdr4bqxxhjc84ynv53bh2v1rmq87jymw40b1"; depends=[boot]; }; -polyclip = derive { name="polyclip"; version="1.3-0"; sha256="05bbj4hy4h1hcb4pzg1mjp8k7k91kqq5rg2x0ns4hcs1h4zrspds"; depends=[]; }; +polyclip = derive { name="polyclip"; version="1.3-2"; sha256="0gsckb5nwfq1w48g67pszk3ndzvj63r8rp7vhh77idizaczkv0r1"; depends=[]; }; polycor = derive { name="polycor"; version="0.7-8"; sha256="0hvww5grl68dff23069smfk3isysyi5n2jm4qmaynrk0m3yvhxwn"; depends=[mvtnorm sfsmisc]; }; polynom = derive { name="polynom"; version="1.3-8"; sha256="05lng88c8cwj65cav31hsrca9nbrqn5rmcz79b17issyk2j0g86p"; depends=[]; }; polysat = derive { name="polysat"; version="1.3-3"; sha256="02h1lf1bk7hhphfdcql0rmiszp3b3mdfhqfwxj369389dg0q57bd"; depends=[]; }; polytomous = derive { name="polytomous"; version="0.1.6"; sha256="137qcnncih1lm2wshwrznlcr0k552n0sqhiy73iwis59lg854caa"; depends=[MASS Hmisc lme4]; }; polywog = derive { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[miscTools foreach Formula glmnet iterators Matrix ncvreg Rcpp stringr Rcpp]; }; pom = derive { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; -pomp = derive { name="pomp"; version="0.53-5"; sha256="1bfb2b1fdj673b43jnq9pzh36h1hfb8dsarf1dq6pwain7dnqjyp"; depends=[subplex nloptr mvtnorm deSolve coda]; }; +pomp = derive { name="pomp"; version="0.65-1"; sha256="1fxfbqa6lb4x0d4h29in8crhac32aw71chyjyvnhadfqynxhhv4k"; depends=[mvtnorm deSolve coda subplex nloptr]; }; pooh = derive { name="pooh"; version="0.3"; sha256="1wcv77vjjp62c5l1mplnkk4vhy2scjrq96cjx58w5jdj46lban2h"; depends=[]; }; popKorn = derive { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popRange = derive { name="popRange"; version="1.1.3"; sha256="0kkz6va0p8zv3skaqqcpw42014d9x9x4ilx0czz91qf46h61jgb0"; depends=[findpython]; }; @@ -5181,12 +5282,12 @@ popdemo = derive { name="popdemo"; version="0.1-4"; sha256="0syhmm8fnxbsdzj75y7d popgen = derive { name="popgen"; version="1.0-3"; sha256="00rgfwmmiharfxqlpy21n3jbxwr5whzdg8psqylkjf83ls2myqzm"; depends=[cluster]; }; popgraph = derive { name="popgraph"; version="1.4"; sha256="1z6w6vj3vl2w10hvzwmkw4d475bqcd6ys92xnn445ag6vpq0cvxq"; depends=[ggplot2 igraph MASS sp Matrix sampling]; }; poplite = derive { name="poplite"; version="0.99.16"; sha256="0yp1hfda2k6c5x0gbcfxj9h6igzx3ra05xs7g88wjz76yxp3wb6w"; depends=[dplyr DBI igraph lazyeval RSQLite]; }; -poppr = derive { name="poppr"; version="1.1.4"; sha256="13zxcclr8ar3ibjd34n23g0q0rw28gdl2q5477cmpcnypwzxsa71"; depends=[adegenet vegan ggplot2 phangorn ape igraph ade4 pegas reshape2]; }; +poppr = derive { name="poppr"; version="1.1.5"; sha256="0whk06gwm171b5j2vcfqi7rdwczv109g7bw2gfnzhz4fm46nhmfk"; depends=[adegenet vegan ggplot2 phangorn ape igraph ade4 pegas reshape2]; }; popsom = derive { name="popsom"; version="2.3"; sha256="0hdg1nx8mlpqw9aj2q08sb20frsc5jnbvqpfalf5kyvlygnhxdlc"; depends=[som fields]; }; portes = derive { name="portes"; version="2.1-3"; sha256="0nqh6aync5igmvg7nr5inkv2cwgzd0zi6ky0vvrc3abchqsjm2ck"; depends=[]; }; portfolio = derive { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; }; portfolioSim = derive { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; }; -potts = derive { name="potts"; version="0.5-2"; sha256="1q4kvknxkrd8qbv8l3vmwrppgzq5bsysnqgm029lx7iys73x4fck"; depends=[]; }; +potts = derive { name="potts"; version="0.5-3"; sha256="1pddz8d4p69wzr51zy3bnbwka1a2dr7civh72qi0rpdsrfm4jxl6"; depends=[]; }; poweRlaw = derive { name="poweRlaw"; version="0.30.2"; sha256="1b4ngqsh5gywksb3y9cj1yjkhxs4081svwgxwf8gpsa7fnl9c0fl"; depends=[VGAM]; }; powell = derive { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; }; powerAnalysis = derive { name="powerAnalysis"; version="0.2"; sha256="15ff3wnn37sjkiyycgh16g7gwl3l321fbw12kv621dad5bki14jl"; depends=[]; }; @@ -5213,11 +5314,11 @@ predictmeans = derive { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0 predmixcor = derive { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; prefmod = derive { name="prefmod"; version="0.8-32"; sha256="0v5r195gzbfi6jbqz8r1x2fzj3anqxf4hxaxb9krm9rkwgphrwpi"; depends=[gnm colorspace]; }; presens = derive { name="presens"; version="1.0.0"; sha256="0hwciahpfp7h7dchn6k64cwjwxzm6cx28b66kv6flz4yzwvqd3pb"; depends=[birk marelac]; }; -preseqR = derive { name="preseqR"; version="1.1.1"; sha256="0hz9a7jji2k55a57l03ajkf0j7yp6dgyapyqr1ip0v18fjpfj98q"; depends=[]; }; +preseqR = derive { name="preseqR"; version="1.2.1"; sha256="1izfykccybnr2pnw043g680wg78hbds6hcfqirqhy1sfn6sf8lz1"; depends=[]; }; prettyGraphs = derive { name="prettyGraphs"; version="2.1.5"; sha256="19jag5cymancxy5lvkj5mkhdbxr37pciqj4vdvmxr82mvw3d75m4"; depends=[]; }; prettyR = derive { name="prettyR"; version="2.1-1"; sha256="173n0cp0mq00y1ydba9m7l3izz04czg9vvadbflfinpi86wvcgq6"; depends=[]; }; prettyunits = derive { name="prettyunits"; version="1.0.0"; sha256="0lh83pf30hnqcq6ppq8axlyawp0qxpym0lqq8pchh3gq8mgcdz1h"; depends=[magrittr assertthat]; }; -prevR = derive { name="prevR"; version="2.9"; sha256="1h0v52pwhrb9ib61wjqdcand5prc1h205nd2rl5qiiqcnq4xn582"; depends=[sp gstat GenKern rgdal fields]; }; +prevR = derive { name="prevR"; version="3.1"; sha256="1x8ssz1k8vdq3zx1qhfhyq371i8s3bam2rd6bm3biha5i8icglh6"; depends=[sp rgdal ggplot2 directlabels GenKern fields gstat foreign maptools]; }; prevalence = derive { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[rjags coda]; }; prim = derive { name="prim"; version="1.0.15"; sha256="008a8fm4as5b6j70xxwiipywhbg1wmdbgjz9r7qfnivcpfarxv7f"; depends=[rgl misc3d]; }; primer = derive { name="primer"; version="1.0"; sha256="0vkq794a9qmz9klgzz7xz35msnmhdaq3f91lcix762wlchz6v7sg"; depends=[deSolve lattice]; }; @@ -5225,7 +5326,7 @@ primerTree = derive { name="primerTree"; version="1.0.1"; sha256="068j5a2rh8f1h1 princurve = derive { name="princurve"; version="1.1-12"; sha256="19fprwpfhgv6n6ann978ilwhh58qi443q25z01qzxml4b5jzsd7w"; depends=[]; }; prinsimp = derive { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; prob = derive { name="prob"; version="0.9-5"; sha256="05skjqimzhnk99z864466dc8qx58pavrky320il91yqyr8b98j8b"; depends=[combinat fAsianOptions hypergeo VGAM]; }; -probFDA = derive { name="probFDA"; version="1.0"; sha256="0aqg3f9n1c30wiqml556xmdcv9yr8rijqvymqk89jdzfc0ri25gh"; depends=[MASS]; }; +probFDA = derive { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; }; probemod = derive { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; }; probsvm = derive { name="probsvm"; version="1.00"; sha256="1k0zysym7ncmjy9h7whwi49qsfkpxfk7chfdjrydl6hn6pscis37"; depends=[kernlab]; }; prodlim = derive { name="prodlim"; version="1.5.1"; sha256="0qjyx4i66cahiqjqff63ljwxdig4lvfs2asxnhkgylwn2kb3lygv"; depends=[survival KernSmooth lava]; }; @@ -5235,6 +5336,7 @@ profileR = derive { name="profileR"; version="0.2-1"; sha256="1hcydy7hqjac9mvbai profr = derive { name="profr"; version="0.3.1"; sha256="1w06mm89apggy6wc273b2nsp95smajr8sf3dwshykivv7mhkxs5d"; depends=[stringr plyr]; }; proftools = derive { name="proftools"; version="0.1-0"; sha256="1wzkrz7zr2pjw5id2sp6jdqm5pgrrh35zfwjrkr6mac22lniq4bv"; depends=[]; }; prognosticROC = derive { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; }; +progress = derive { name="progress"; version="1.0.2"; sha256="1dpcfvdg1rf0fd4whcn7k09x70s7jhz8p7nqkm9p13b4nhil76sj"; depends=[prettyunits R6]; }; proj4 = derive { name="proj4"; version="1.0-8"; sha256="06r3lavgixrsa52d1v31laqcbw6fb9xn23akv39hvaib78diglv9"; depends=[]; }; propOverlap = derive { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[]; }; propagate = derive { name="propagate"; version="1.0-4"; sha256="18vyh4i4zlsmggfyd4w0zrznk75m84k08p1qa9crind04n5581j1"; depends=[MASS tmvtnorm Rcpp ff minpack_lm Rcpp]; }; @@ -5247,8 +5349,9 @@ proto = derive { name="proto"; version="0.3-10"; sha256="03mvzi529y6kjcp9bkpk7zl protoclass = derive { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; protoclust = derive { name="protoclust"; version="1.5"; sha256="03qhqfqdz45s8c1p8c6sqs10i6c2ilx4fz8wkpwas3j78lgylskg"; depends=[]; }; protr = derive { name="protr"; version="0.5-1"; sha256="1ji0vpy9rrrvbsfwi4823ywi5zbwl57zw1glxllxgwyv9l6v4bpb"; depends=[]; }; +provenance = derive { name="provenance"; version="0.2"; sha256="07wgfb5hmdd4nddl42wpqsx9vzayvngrgmcsssilbm5qbrvgv4sr"; depends=[MASS smacof vegan shapes]; }; proxy = derive { name="proxy"; version="0.4-14"; sha256="1ijip1jmpm7dg11yv2rjcpkpg4p30m9acddbn49fbss9kcpl5b5i"; depends=[]; }; -pryr = derive { name="pryr"; version="0.1"; sha256="1vp63v1l4myahmmbphc043x1kpmvvdhs6dr640dxi0napvkdqlq6"; depends=[stringr codetools Rcpp Rcpp]; }; +pryr = derive { name="pryr"; version="0.1.1"; sha256="00j81iwf2mka1a953nrgar0r4wcfi4n5nl8pidnhw51lyh2285d8"; depends=[stringr codetools Rcpp Rcpp]; }; psData = derive { name="psData"; version="0.1.2"; sha256="0w8kzivqrh1b6gq803rfd10drxdwgy0cxb5sff273m6jxzak52f2"; depends=[countrycode DataCombine foreign xlsx]; }; psbcGroup = derive { name="psbcGroup"; version="1.1"; sha256="17kpxddvy9m87i9r1hazc8g6mm35p1452ngz80byhgw9p0jkvn5p"; depends=[LearnBayes SuppDists mvtnorm]; }; pscl = derive { name="pscl"; version="1.4.9"; sha256="15fij6n43hry1plgzrak9vmk9xbb7n4v2frv997bhwxbs6jhhfhf"; depends=[MASS lattice]; }; @@ -5256,7 +5359,7 @@ psd = derive { name="psd"; version="1.0-1"; sha256="1ssda4g98m0bk6gkrb7c6ylfsd2a pse = derive { name="pse"; version="0.4.0"; sha256="1ln6b5ch99fmmcsfn8m8fl4ir7cadwq5ckggwizw9cbllw3drv0b"; depends=[Hmisc boot]; }; pseudo = derive { name="pseudo"; version="1.1"; sha256="0dcx6b892cic47rwzazsbnsicpgyrbdcndr3q5s6z0j1b41lzknd"; depends=[KMsurv geepack]; }; psgp = derive { name="psgp"; version="0.3-6"; sha256="0h9gyadfy0djj32pgwhg8vy2gfn7i7yj5nnsm6pvfypc3k71s2wf"; depends=[intamap automap gstat Rcpp RcppArmadillo]; }; -psidR = derive { name="psidR"; version="1.2"; sha256="14cpxk7z0inrpvhsdb3z6r5nrpyb4v8bv77mygxcf51rxihigzvj"; depends=[data_table RCurl foreign SAScii]; }; +psidR = derive { name="psidR"; version="1.3"; sha256="1jdxbjvc309b1bs81v57kc1g7lgfdz84bfakh9qwh8wgjqbjr06i"; depends=[data_table RCurl foreign SAScii]; }; pso = derive { name="pso"; version="1.0.3"; sha256="0alar695c6kc1rsvwipsrvlxc93f3sy9l0yhp0mggyqgxkkvy406"; depends=[]; }; pspearman = derive { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; pspline = derive { name="pspline"; version="1.0-16"; sha256="170apwfv2lbf2rggzzynrf9vi2mr0y15sm4zy8djxxpzv217iaf7"; depends=[]; }; @@ -5285,7 +5388,7 @@ pwr = derive { name="pwr"; version="1.1-2"; sha256="1czganj70qszz32yx2jprhr8h9a2 pwt = derive { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt8 = derive { name="pwt8"; version="8.0-0"; sha256="12cgyban6waj0cxz9gb35s5v0v29rmx67ipzalzdnrjp5nsmy431"; depends=[]; }; pxR = derive { name="pxR"; version="0.40.0"; sha256="08s62kzdgak7mjzyhd32qn93q5l7sj01vhsk7fjg9nxjvm78xxka"; depends=[stringr reshape2 RJSONIO plyr]; }; -pxweb = derive { name="pxweb"; version="0.5.5"; sha256="1rrsxis2fi1x90gj251phbrz3bbl7yyc39n20lk2rln14acdhfsy"; depends=[data_table plyr stringr RJSONIO httr]; }; +pxweb = derive { name="pxweb"; version="0.5.54"; sha256="17vg480b54mcv9jbkci1rrn6zi90zzw098xzrcw3kvp583as9mar"; depends=[data_table plyr stringr RJSONIO httr]; }; pycno = derive { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[sp maptools rgeos]; }; pyramid = derive { name="pyramid"; version="1.4"; sha256="0hh0hmckicl0r2r9zlf693j65jr9jgmiz643j2asp57nbs99lgxz"; depends=[]; }; qLearn = derive { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; @@ -5295,8 +5398,8 @@ qat = derive { name="qat"; version="0.73"; sha256="1fff4sv1n3i0gfgj83sy4pygxalif qcc = derive { name="qcc"; version="2.6"; sha256="0bsdgpsqvkz2w1qanxwx8kvrpkpzs9jgw8ml2lyqhmhqbxyg125r"; depends=[MASS]; }; qclust = derive { name="qclust"; version="1.0"; sha256="0cxkk4lybpawyqmy5j6kkpgm0zy0gyn3brc1mf9jv8gmkl941cp3"; depends=[mclust mvtnorm]; }; qcr = derive { name="qcr"; version="0.1-18"; sha256="16dfda3rwivsdhp7j5izzbk2rzwfabfmxgpq4kjc4h7r90n2vly2"; depends=[qcc]; }; -qdap = derive { name="qdap"; version="2.2.0"; sha256="0lbc38x4gvh6q2sb6d524ksfhpvxm8knfy85bmwbf6d3q4s0b6q4"; depends=[ggplot2 qdapDictionaries qdapRegex qdapTools RColorBrewer chron dplyr gdata gender gridExtra igraph NLP openNLP plotrix RCurl reports reshape2 scales stringdist tm venneuler wordcloud xlsx XML]; }; -qdapDictionaries = derive { name="qdapDictionaries"; version="1.0.5"; sha256="1nk432nyw4srz92zsikv830dpjxflrrgjhq5va6pd3ifpy3nzdrw"; depends=[]; }; +qdap = derive { name="qdap"; version="2.2.1"; sha256="0gix6l0h6q0c2pl38d3qp3pzs1m3j96rcb9n6q9k1nh0002vfnsg"; depends=[qdapDictionaries qdapRegex qdapTools RColorBrewer chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; +qdapDictionaries = derive { name="qdapDictionaries"; version="1.0.6"; sha256="1icivvsi33494ycd7vfqm9zx2g2rc1m3dygs3bi0ndi798z1cvx2"; depends=[]; }; qdapRegex = derive { name="qdapRegex"; version="0.3.2"; sha256="1hygkck4wilm2f2cg5q82a867608j3dqp7wqj3kbnh5a970lw41y"; depends=[stringi]; }; qdapTools = derive { name="qdapTools"; version="1.1.0"; sha256="0k3mvcjj2fg2v3z8jm2z02zmrpgjpwbpcaanmp2vlykqzacsrl52"; depends=[chron data_table RCurl XML]; }; qdm = derive { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; @@ -5315,13 +5418,13 @@ qqtest = derive { name="qqtest"; version="1.0"; sha256="12hw4d2gddb4fgdi986pyqgv qrLMM = derive { name="qrLMM"; version="1.1"; sha256="1yg9ph6jy0sn4d82vn4v7yy3mqczbnzsq8qqp9dw38vh2456rmf2"; depends=[nlme matrixcalc mvtnorm ghyp quantreg psych]; }; qrNLMM = derive { name="qrNLMM"; version="1.0"; sha256="0vlinc3bggapff29dyz14vn122gy6aq3rp38v2bpnxfkbpj10lvy"; depends=[matrixcalc mvtnorm ghyp quantreg psych ald]; }; qrfactor = derive { name="qrfactor"; version="1.4"; sha256="0f02lh8zrc36slwqy11x03yzfdy94p1lk5jar9h5cwa1dvi5k8gm"; depends=[mvoutlier mgraph pvclust cluster maptools]; }; +qrmtools = derive { name="qrmtools"; version="0.0-1"; sha256="0xjgb8clyhlrl4qdbhi85m97cbhab5q5sy2zr87gamz2y365alpr"; depends=[xts]; }; qrng = derive { name="qrng"; version="0.0-2"; sha256="0rs4dggvrlc3bi0wgkjw8lhv4b3jpckcfkqzsaz0j46kf6vfgfw1"; depends=[]; }; qrnn = derive { name="qrnn"; version="1.1.2"; sha256="01wsz9qcdiayi7gsyy2y09jyyapanyhlc4pdyman2f7z5nl9yv9i"; depends=[]; }; -qtbase = derive { name="qtbase"; version="1.0.4"; sha256="02yilvywkcqn3y9ayix18cgkwhi0gh69fl3fcw28fs2zxf1hqy75"; depends=[]; }; +qtbase = derive { name="qtbase"; version="1.0.9"; sha256="1jffdkv6jwxqljx6jd5n27wk9r5sg0llpf34nlr29h4shi3f2f8z"; depends=[]; }; qte = derive { name="qte"; version="1.0.1"; sha256="15y6n0c9jinfz7hmm107palgy8fl15bc71gw0bcd3bawpydkrq2w"; depends=[]; }; qtl = derive { name="qtl"; version="1.36-6"; sha256="1qn8fv0s2934pbds2962isr8y96s2k0jlh6y27rz21qlpryrbijb"; depends=[]; }; qtlDesign = derive { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; }; -qtlbim = derive { name="qtlbim"; version="2.0.7"; sha256="0nm7ky5bkzhmfr41fs1pvl51i2df1fz11j55q74ma2wzki5adfps"; depends=[qtl lattice coda MASS]; }; qtlbook = derive { name="qtlbook"; version="0.18-1"; sha256="09b4w7kqdlmpf0vsjgwbi9sraafzchvk18yzrx72gs151v03nxlm"; depends=[qtl]; }; qtlhot = derive { name="qtlhot"; version="0.9.0"; sha256="1043rksqqzgmr7q03j18wxgm706prqxq9ki9b9p2dxvc62vfcfih"; depends=[qtl lattice corpcor mnormt]; }; qtlmt = derive { name="qtlmt"; version="0.1-3"; sha256="01ql0fr2mxl8a8nd6lpig5j8vznv594ygn6bj6d31gj15r5rs8fs"; depends=[]; }; @@ -5335,15 +5438,15 @@ qualCI = derive { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cp qualV = derive { name="qualV"; version="0.3-1"; sha256="0p4yfgq2wxwis2w28mdb61x6hzm6sb9bczjdm9bc05ga5srr3sdd"; depends=[KernSmooth]; }; qualityTools = derive { name="qualityTools"; version="1.54"; sha256="0ylp5a49b4q4max4yz30ia7r12s4jrvqn9zx5a21qcnpinf8b932"; depends=[]; }; quantchem = derive { name="quantchem"; version="0.13"; sha256="1ga5xa7lsk04flfp1syjzpnvj3i2ypzh1m49vq1xkdwpm6axdy8n"; depends=[MASS outliers]; }; -quanteda = derive { name="quanteda"; version="0.7.2"; sha256="0mpalvnhqkmqczpc1qaipvqxlyqfli510p81h6mf0sq9f82nzmks"; depends=[Matrix data_table SnowballC wordcloud proxy Rcpp ca Rcpp RcppArmadillo]; }; +quanteda = derive { name="quanteda"; version="0.7.2-1"; sha256="1j6hjcr3sd1xymzznvz1r2z6rs3m6vp3ji5y6dqq5qr18g1bi4cm"; depends=[Matrix data_table SnowballC wordcloud proxy Rcpp ca Rcpp RcppArmadillo]; }; quantification = derive { name="quantification"; version="0.1.0"; sha256="0987389rr21fl3khgd3a1yq5821hljwm0xlyxgjy1km5hj81diap"; depends=[car]; }; quantmod = derive { name="quantmod"; version="0.4-4"; sha256="0a8gr2qb2b2w58zyxbyz3dbprmyiwf5cd62xqv4d3rk29l7vk4n8"; depends=[xts zoo TTR]; }; quantreg = derive { name="quantreg"; version="5.11"; sha256="0pyc1zknkjyvaix76bn84l90zavajsc7jx17x0zanllnh34siizp"; depends=[SparseM]; }; -quantregForest = derive { name="quantregForest"; version="0.2-3"; sha256="06c73f66nnw3vd2dv8h5skzyxbr89i3pyprbb0if721h5d7pm0s7"; depends=[randomForest]; }; +quantregForest = derive { name="quantregForest"; version="1.0"; sha256="11mnb32vz6m2g7nggip2y251rkwn6wr7jwdh0hqvl0pgalmipb84"; depends=[randomForest]; }; quantregGrowth = derive { name="quantregGrowth"; version="0.3-0"; sha256="0iyqd4gf780xqj2gcinlx0h6r6wy4vc7sp8r4qa1s638qcrp3qwa"; depends=[quantreg]; }; quantspec = derive { name="quantspec"; version="1.0-3"; sha256="1g4arhhybw021dnz0imdfwwj328gc8yw75cgnnd00skdc402cfhk"; depends=[quantreg abind zoo snowfall Rcpp Rcpp]; }; questionr = derive { name="questionr"; version="0.4.3"; sha256="13mmmjxg9vkn53dp9hng330bkilzdf2zqisgs21ng08b6p9dv7n4"; depends=[shiny highr classInt htmltools]; }; -queueing = derive { name="queueing"; version="0.2.4"; sha256="03zz5437bkai2bmk9hcwf09cmyrnbs2cxlafbcf1lp6iahj66il9"; depends=[]; }; +queueing = derive { name="queueing"; version="0.2.5"; sha256="11a44aqq0s50vdbn7rhijajqw1rrcj1qnyjjd8dn1cc5nvq141k7"; depends=[]; }; quickpsy = derive { name="quickpsy"; version="0.1.0"; sha256="1p1rhv69bh842r77dxn73l0k2lwa5vj2xc27m470pjygap2zaqv0"; depends=[boot DEoptim dplyr ggplot2 tidyr MPDiR]; }; quint = derive { name="quint"; version="1.0"; sha256="19dxrssy4dw7v3s4hhhy6yilbc7zb6pvcnh3mm1z6vv5a1wfr245"; depends=[partykit Formula rpart]; }; quipu = derive { name="quipu"; version="1.9.0"; sha256="1py1qpbwp2smr5di8b3zmzxxhchfmr5qfhqkdiqig28mcnqcmp5n"; depends=[agricolae stringr pixmap shiny xtable]; }; @@ -5367,7 +5470,7 @@ rClinicalCodes = derive { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r rDEA = derive { name="rDEA"; version="1.1-1"; sha256="17j7cz08nd5sgr1z75jlrdjl9ffkdhmzmqcyrf1qcy36v9i2fqzk"; depends=[slam truncreg truncnorm maxLik]; }; rDNA = derive { name="rDNA"; version="1.30.1"; sha256="12h83zirv55sryc1zww97ws8kvsym1z7p7y5d4w43nam8mi3fpcd"; depends=[rJava]; }; rDVR = derive { name="rDVR"; version="0.1.1"; sha256="19a4f9k65bd49vkn3sxkjdmcpwyawk7gwmvancvqr745gfgs0wzg"; depends=[RCurl]; }; -rEMM = derive { name="rEMM"; version="1.0-8"; sha256="1d8nwranqfvr9c0g2ny7akawgqk5hjnr1mclk87gmbmwn9iwik34"; depends=[proxy MASS clusterGeneration igraph]; }; +rEMM = derive { name="rEMM"; version="1.0-9"; sha256="0b3g30s8nw107y5yg113xdw1s2h96mq0j5cldj01z3j676idjgw5"; depends=[proxy igraph clusterGeneration MASS]; }; rFDSN = derive { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; rFerns = derive { name="rFerns"; version="1.1.0"; sha256="00ddb9zwf4hqkx9qmrndz182mg69mb5fyg0v0v4b32sy4sixnps5"; depends=[]; }; rGammaGamma = derive { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; }; @@ -5378,11 +5481,11 @@ rJava = derive { name="rJava"; version="0.9-6"; sha256="008g6s6rcb5lnz5y2a2rs4iq rJavax = derive { name="rJavax"; version="0.3"; sha256="0sv2fjinp4wmdfvcpgm4hv8v3fkiiv84ywqyr4hz86j50ncd79km"; depends=[rJava]; }; rJython = derive { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; }; rLTP = derive { name="rLTP"; version="0.1"; sha256="0dv8jj8rgcx4cbbs10sqdblcznxgm9ld5md922ghnka4ymar244m"; depends=[RCurl]; }; -rLakeAnalyzer = derive { name="rLakeAnalyzer"; version="1.7.3"; sha256="1w9z0m8ddslsk4d9r8dm5npm1s8sqdjv11x0gc08awa77iwak4wh"; depends=[plyr]; }; +rLakeAnalyzer = derive { name="rLakeAnalyzer"; version="1.7.6"; sha256="03gdr4swy3dq6vkq4q44sdn7slgjzcqzd2pmhac4bghgzgk3zgj8"; depends=[plyr]; }; rLiDAR = derive { name="rLiDAR"; version="0.1"; sha256="1zm3c3xpxk1ll0cq589k1kf69wgn93qmaqkvpgcjib0ay35q7c7f"; depends=[spatstat sp deldir plyr raster geometry rgl bitops]; }; rLindo = derive { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; rNMF = derive { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[nnls knitr]; }; -rNOMADS = derive { name="rNOMADS"; version="2.1.3"; sha256="1m2qbkqaninczs4v558vpzkiqh0rngkmpp9sk7y4k5j3g4x1jrpf"; depends=[rvest scrapeR stringr fields GEOmap MBA RCurl XML]; }; +rNOMADS = derive { name="rNOMADS"; version="2.1.4"; sha256="0a0knxqqbn52i4ixpv16h1hnajhwx788cmdiq78ysds7yfkjrwzy"; depends=[rvest scrapeR stringr fields GEOmap MBA RCurl XML]; }; rPlant = derive { name="rPlant"; version="2.7"; sha256="0gqxb49d6qzkd533s9qp75byvz66v1csdlnmh3m2zg96aw32178r"; depends=[rjson RCurl seqinr knitcitations]; }; rPref = derive { name="rPref"; version="0.5"; sha256="0wgyf785izfhx1jvff4as1dir1s432z9v2b2rgdxvay9y5zpc2ar"; depends=[Rcpp RcppParallel dplyr igraph Rcpp RcppParallel]; }; rPython = derive { name="rPython"; version="0.0-5"; sha256="0d608v1x8walwnx7aa3m0n7999jlbiymhl7605z4n7ps6l1140mv"; depends=[RJSONIO]; }; @@ -5403,11 +5506,11 @@ rags2ridges = derive { name="rags2ridges"; version="1.4"; sha256="1vwd39vp8xdrcz rainbow = derive { name="rainbow"; version="3.3"; sha256="0xiqljshkdhhkdgcvz5n9qgbxgxskpxbq14vbpil9nqw2syj9xvj"; depends=[MASS pcaPP hdrcde cluster colorspace ks]; }; raincpc = derive { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; }; rainfreq = derive { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; }; -ramify = derive { name="ramify"; version="0.2.0"; sha256="1fn2r6mr461yp00z8c7f1wsyhz3ag13q6ckf84sj11rgg6jivzjj"; depends=[]; }; +ramify = derive { name="ramify"; version="0.3.0"; sha256="1pysv802pyab06zl41b71x91527fw1smw4x2lcj2xc3p95yb4zb9"; depends=[]; }; ramps = derive { name="ramps"; version="0.6-13"; sha256="1y7jaajzbf6d9xwr0rg0qr43l8kncgwbpfy5rpka90g3244v8nwz"; depends=[coda maps Matrix nlme fields]; }; randNames = derive { name="randNames"; version="0.2"; sha256="0mgfwdbadfvxg1dp8aqp2c24lkhz3bi9ssmym4ns6xjq088l3ldh"; depends=[dplyr httr jsonlite]; }; randaes = derive { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; }; -random = derive { name="random"; version="0.2.3"; sha256="1ljz54i73bzxh69v7xjklajcl526pdapr0jgdwd6prfilafhf618"; depends=[curl]; }; +random = derive { name="random"; version="0.2.4"; sha256="17d1gcdymgcc08hx3998vs0x70fn8gxw2a1ycm9z7xrasx03g7kn"; depends=[curl]; }; random_polychor_pa = derive { name="random.polychor.pa"; version="1.1.4-1"; sha256="1051v7krrawdqnhz9q01rsknp2i7iv82d370q7m9i9d9i8wfnpk5"; depends=[psych nFactors boot MASS mvtnorm sfsmisc]; }; randomForest = derive { name="randomForest"; version="4.6-10"; sha256="0glj08w6sbabr3n71kzd5w3jb7vhrys8rq904j27a4xk0qp4s5lv"; depends=[]; }; randomForestSRC = derive { name="randomForestSRC"; version="1.6.1"; sha256="174ky1wwdpq6wkn8hanfpfgy55jf6v1hlm6k688gjs0515y5490r"; depends=[]; }; @@ -5421,7 +5524,7 @@ randomizr = derive { name="randomizr"; version="0.2.2"; sha256="0g870sr8zjfl1dh3 randtests = derive { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; randtoolbox = derive { name="randtoolbox"; version="1.16"; sha256="03z4g2mmdywsgl95xbj80awirkgrghdk2kwhsh58p00aq4bpl5ff"; depends=[rngWELL]; }; rangeMapper = derive { name="rangeMapper"; version="0.2-8"; sha256="0bxb37gy98smypjj27r3dbd0vfyvaqw2p25qv07j3isykcn2pxpn"; depends=[RSQLite rgdal sp rgeos raster maptools lattice RColorBrewer classInt]; }; -rankdist = derive { name="rankdist"; version="0.3.1"; sha256="0812bw2bm9837lp5l6lwbhln61qb584f0nk2k7nc60m1ppsi0dw6"; depends=[Rcpp hash optimx Rcpp]; }; +rankdist = derive { name="rankdist"; version="0.4.1"; sha256="11lc7ggi5bv836f3bwk8gb5pry4fw4qwbj95bzg34xdascaapw59"; depends=[Rcpp hash optimx Rcpp]; }; rankhazard = derive { name="rankhazard"; version="1.0"; sha256="1kylg8yjrixbv86i2ffhhn8f5shsj8kvi66k202ari0li92y7dsg"; depends=[survival]; }; rappdirs = derive { name="rappdirs"; version="0.3"; sha256="1yjd91h1knagri5m4djal25p7925162zz5g6005h1fgcvwz3sszd"; depends=[]; }; rapport = derive { name="rapport"; version="0.51"; sha256="1qn45nrcawr8d9pkdnpmm37dg31l28gfbnwjl62fs7y691187cqp"; depends=[lattice plyr pander yaml reshape]; }; @@ -5446,13 +5549,14 @@ rbmn = derive { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293 rbounds = derive { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbugs = derive { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; }; rbundler = derive { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; -rcbalance = derive { name="rcbalance"; version="1.5"; sha256="1lqxx9ghxnskl8sy26x03d8baw8kn78mlxbh1gjjkszx4y5bm4vl"; depends=[MASS plyr]; }; +rcbalance = derive { name="rcbalance"; version="1.6"; sha256="0nbwsisx4ajdccywwvpg2xcaf8b4b25zij2qcb39yzmlz0yk6jjz"; depends=[MASS plyr]; }; rcdd = derive { name="rcdd"; version="1.1-8"; sha256="09bb92rp44palx9dvc9pb0gdmb1g22289xjk8p9s918lalc6i9aw"; depends=[]; }; rcdk = derive { name="rcdk"; version="3.3.2"; sha256="02rlg3w8dbmag8b4z4wayh7xn61xc9g3647kxg91r0mvfhmrxl2h"; depends=[fingerprint rJava rcdklibs png iterators]; }; rcdklibs = derive { name="rcdklibs"; version="1.5.8.4"; sha256="0mzkr23f4d639vhxfdbg44hzxapmpqkhc084ikcj93gjwvdz903k"; depends=[rJava]; }; +rchallenge = derive { name="rchallenge"; version="1.1"; sha256="1qad0mcadr3zw5r37rgwnqf4ic9brlw3zl5n4jcxyaj324fj4pa3"; depends=[rmarkdown knitr]; }; rcicr = derive { name="rcicr"; version="0.3.0"; sha256="0fvv6diqg6sw3ar3gzvhl3mbm6zvx0k12lzsa92mccg0giqa9n0w"; depends=[matlab aspace jpeg]; }; rclinicaltrials = derive { name="rclinicaltrials"; version="1.4.1"; sha256="1x8mj4gzfpgvdj3glwanr76g5x8pks8fm806bvnfls35g967z4p4"; depends=[httr XML plyr]; }; -rcorpora = derive { name="rcorpora"; version="1.0.1"; sha256="10bmsmx9pznfpddddvk7khm7klxg1c82bf85613bnpcwjyb7xcid"; depends=[jsonlite]; }; +rcorpora = derive { name="rcorpora"; version="1.1.0"; sha256="05i9zqvgg5fxgscqzmbsi84baq9cxs14k70agjy95h61fndaaarf"; depends=[jsonlite]; }; rcppbugs = derive { name="rcppbugs"; version="0.1.4.1"; sha256="0wb5mzw1sdrr7lc6izilv60k5v0wcvy8q31a863b63a9jvh16g8d"; depends=[Rcpp Rcpp RcppArmadillo BH]; }; rcrossref = derive { name="rcrossref"; version="0.3.0"; sha256="1w822n6mlld7fa92iy38xjvgnkhyns3mvy7vaqabgr2bikcz6545"; depends=[jsonlite XML httr plyr bibtex dplyr]; }; rda = derive { name="rda"; version="1.0.2-2"; sha256="1g2q7c0y138i9r7jgjrlpqznvwpqsj6f7vljqqfzh2l6kcj43vjj"; depends=[]; }; @@ -5470,8 +5574,8 @@ readMzXmlData = derive { name="readMzXmlData"; version="2.8"; sha256="0x5h3dh6fk readODS = derive { name="readODS"; version="1.4"; sha256="00xcas8y0cq3scgi9vlfkrjalphmd7bsynlzpy7izxa5w9b7x79f"; depends=[XML]; }; readbitmap = derive { name="readbitmap"; version="0.1-4"; sha256="08fqqsdb2wsx415mnac9mzl5sr5and0zx72ablnlidqfxv8xsi9d"; depends=[bmp jpeg png]; }; reader = derive { name="reader"; version="1.0.5"; sha256="1g22pnlfr2c974s6rqnyixknhgy2crqbxg2cg2s3ja1sk29v4gr0"; depends=[NCmisc]; }; -readr = derive { name="readr"; version="0.1.0"; sha256="0w6576lrnwk1p90mjwsgy7hi3rk5dqmksnwnmn1gw46lh2888bc8"; depends=[Rcpp curl Rcpp BH]; }; -readstata13 = derive { name="readstata13"; version="0.6.1"; sha256="0h5x6j74m7z715nknh4s62ffs7j3ccpcvy0ws8wf3bdzfa27jvq5"; depends=[Rcpp Rcpp]; }; +readr = derive { name="readr"; version="0.1.1"; sha256="1raw3kihksqr274p0mdigfxpg8yrhx0phwiab22sdi1vp62c8ja6"; depends=[Rcpp curl Rcpp BH]; }; +readstata13 = derive { name="readstata13"; version="0.7"; sha256="14il790jgn8l9c8gxgl2s11vzff5xz77jsgdgjs044r407a72wkb"; depends=[Rcpp Rcpp]; }; readxl = derive { name="readxl"; version="0.1.0"; sha256="0a0mjcn70a0nz1bkrdjwq495000kswxvyq1nlad9k3ayni2ixjkd"; depends=[Rcpp Rcpp]; }; reams = derive { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; }; rebird = derive { name="rebird"; version="0.1.1"; sha256="0s8wmp2sghs56ppca57fjfab7wngszmy1g8rd3hiwx6br0sjidcg"; depends=[RJSONIO httr RCurl plyr]; }; @@ -5483,9 +5587,10 @@ recluster = derive { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6g recommenderlab = derive { name="recommenderlab"; version="0.1-5"; sha256="1hpgd2la4wnlxx5h8cjni4i978hdssr041zrg851lpjrkbxmxfsi"; depends=[Matrix registry arules proxy]; }; recommenderlabBX = derive { name="recommenderlabBX"; version="0.1-0"; sha256="0dl79cxarsfp8l4nxnns05jwnjygigjhwpjrr4lzx4nvsfxmgsr2"; depends=[recommenderlab]; }; recommenderlabJester = derive { name="recommenderlabJester"; version="0.1-0"; sha256="1m5jg8gs16cwwwcnjzqkyzwyip8fshrwhmqz8g7nlf6g3p9347rl"; depends=[recommenderlab]; }; -reconstructr = derive { name="reconstructr"; version="0.5"; sha256="0lffi30grk88na2jmkbhs62xf3d8mzrmjsiajrpp7dsaxa650bf0"; depends=[Rcpp Rcpp]; }; -recosystem = derive { name="recosystem"; version="0.2.5"; sha256="0i5rgkmjaz50qlyi85hmr61r0iir53prrphzvnjq5bjchb1k3m09"; depends=[Rcpp Rcpp]; }; +reconstructr = derive { name="reconstructr"; version="1.1.0"; sha256="1kswvpmhk3zzwm4nv6pjb80ww95n9bd4q9j7bhk9kql8v5mnfg5m"; depends=[Rcpp Rcpp]; }; +recosystem = derive { name="recosystem"; version="0.3"; sha256="064rnnz4m85mwq3084m0ldj8sb5z6jwzqzkh22fagsq2xyqri15l"; depends=[Rcpp Rcpp]; }; redcapAPI = derive { name="redcapAPI"; version="1.3"; sha256="08js2lvrdl9ig0pq1wf7cwkmvaah6xs65bgfysdhsyayx0lz5rii"; depends=[chron DBI Hmisc httr stringr]; }; +redist = derive { name="redist"; version="1.1"; sha256="0ddwvmzmqv5nm3azia1g0x0icj1jcd7s34f1kv01phky2pmz5wy4"; depends=[Rcpp spdep sp coda Rcpp RcppArmadillo]; }; ref = derive { name="ref"; version="0.99"; sha256="0f0yz08pqpg57mcm7rh4g0rbvlcvs5fbpjkfrq7fmj850z1ixvw0"; depends=[]; }; refGenome = derive { name="refGenome"; version="1.3.0"; sha256="121aw4w84hlhxgwlf1gh0w3ydvd8zsijrh0q7fzcwi1vdgnjb7lv"; depends=[doBy RSQLite DBI]; }; referenceIntervals = derive { name="referenceIntervals"; version="1.1.1"; sha256="04199nxh216msaghkp66zsi96h76a7c42ldml0fm66v2vamcslg8"; depends=[boot extremevalues car outliers]; }; @@ -5500,7 +5605,7 @@ regpro = derive { name="regpro"; version="0.1.0"; sha256="0d47ffsqx1633pmf3abi7w regress = derive { name="regress"; version="1.3-14"; sha256="0qnks28fr8siq95iiiqyvz82cbdg14i18rj7g9rqyjhiam12fshl"; depends=[]; }; regsubseq = derive { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtest = derive { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; }; -rehh = derive { name="rehh"; version="1.12"; sha256="0qqmh48vxi1yqf6ykfsi6wighly5msf4lqx058lbn555g3vg17jp"; depends=[gplots]; }; +rehh = derive { name="rehh"; version="1.13"; sha256="0hi9bfclai1b948yq9fp1q7rxb8nwvdm368l09la8ghlgxi5lnm8"; depends=[gplots]; }; relSim = derive { name="relSim"; version="0.2-0"; sha256="0cqcp7r263sk874l17wz84mzm4b1dxbfbsk74937rcz1wfc623k5"; depends=[Rcpp Rcpp]; }; rela = derive { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; }; relaimpo = derive { name="relaimpo"; version="2.2-2"; sha256="1rxjg2yw2gyshaij98w83cshxwscnq3ql7bg13n7v4nbjsi1l6zh"; depends=[MASS boot survey mitools corpcor]; }; @@ -5512,7 +5617,7 @@ reldist = derive { name="reldist"; version="1.6-4"; sha256="0v86wws29zy67jidrvfx relevent = derive { name="relevent"; version="1.0-4"; sha256="10bf1s7jmas8ck1izqibqcaqg4z55ciwdpd9pm2697y8z0jhr2rj"; depends=[trust sna coda]; }; reliaR = derive { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; }; relimp = derive { name="relimp"; version="1.0-4"; sha256="1i9j218b6lh6ag4a8x4vwhmqqclbzx46mpwd36s8hdqayzs6lmad"; depends=[]; }; -relsurv = derive { name="relsurv"; version="2.0-4"; sha256="1da3sj7hks5azm18m23fh8r2g02p0nivgilayndxwwvd1i70ycrx"; depends=[survival date MASS]; }; +relsurv = derive { name="relsurv"; version="2.0-5"; sha256="0lwmdz1hm46qlkvfvvyc2v592lx2crs3cxjpkph0vg5w6a0k10i4"; depends=[survival date]; }; remMap = derive { name="remMap"; version="0.2-0"; sha256="1k2niiaq2lr4inrx443clff9cqqvyiiwd45k7yqjd8ixnbaa3mrk"; depends=[]; }; remix = derive { name="remix"; version="2.1"; sha256="0s1gaf7vj08xd4m7lc9qpwvk0mpamabbxk71970mfazx6hk24dr0"; depends=[plyr survival Hmisc ascii]; }; remote = derive { name="remote"; version="0.3.0"; sha256="1f41j26grkv4830bvi6z16b63yksplrq3yg1amd4l634lwhp6x55"; depends=[Rcpp raster foreach Rcpp]; }; @@ -5520,7 +5625,7 @@ rentrez = derive { name="rentrez"; version="0.4.1"; sha256="1prpzfq5106f0r5z4ffj repfdr = derive { name="repfdr"; version="1.1-3"; sha256="15f7x7vqwlpyzvzsybyz825a9dmglbrngjmajrsqlwffypgxjvi8"; depends=[]; }; replicatedpp2w = derive { name="replicatedpp2w"; version="0.1-1"; sha256="0q6mfrdjpx6nh4xgr5i7ka3xvnx9585xdhni020q4pm05rhimid2"; depends=[spatstat]; }; replicationInterval = derive { name="replicationInterval"; version="0.3"; sha256="1zqs114514xj59dlkhw5kmq73grghmb3i5rnnq05qzgf5wjn581i"; depends=[MBESS]; }; -repmis = derive { name="repmis"; version="0.4.2"; sha256="1pjf010h4rkrwarq541wh8x1267894fsdg8na41z8cp3hr5aql21"; depends=[data_table digest httr plyr R_cache]; }; +repmis = derive { name="repmis"; version="0.4.4"; sha256="12sw9l2nifkvri5kvgf0br7yqqmjlq5rj58g6yik8gh7wwy5157z"; depends=[data_table digest httr plyr R_cache]; }; repolr = derive { name="repolr"; version="2.0"; sha256="10wg07sfxcxzswf3zh5sx2cm9dxjx11zymy82a4q9awnacb5gp9b"; depends=[gee]; }; reportRx = derive { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[reshape survival xtable aod cmprsk geoR stringr]; }; reportr = derive { name="reportr"; version="1.1.2"; sha256="0lxnmay9vgg7dsa3scszx3v4lb6m3bv6kjl0dk7hrl7bd67azdrk"; depends=[]; }; @@ -5528,20 +5633,21 @@ reports = derive { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdx reporttools = derive { name="reporttools"; version="1.1.1"; sha256="0cnxzq679f860z063j3pbm2c5qcaz45g73khj9rdp3if0cci8ikj"; depends=[xtable]; }; repra = derive { name="repra"; version="0.4.2"; sha256="1djcs83z8ckpmsbyzscnysmy45z28kswzm852176b9pip21mb1w8"; depends=[data_table dplyr Rcpp reshape2 ggplot2 assertthat Rcpp]; }; represent = derive { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; }; -reproducer = derive { name="reproducer"; version="0.1.2"; sha256="067yj1dhhikjrnkklsfp6p03gp4lqxwfdwhl6z8djj4rkzi48xm5"; depends=[openxlsx ggplot2 gridExtra]; }; +reproducer = derive { name="reproducer"; version="0.1.3"; sha256="1pz2l123xc16m1pqi95khg9r267s25igcyjgr7hn9gy623cqgzah"; depends=[openxlsx ggplot2 gridExtra tm wordcloud RColorBrewer xtable metafor]; }; rerddap = derive { name="rerddap"; version="0.1.0"; sha256="1a58vsm1m9ybafda6pak0fa7kdfscslq9855a5r2x12bzqy98k4f"; depends=[httr dplyr data_table jsonlite xml2 digest ncdf]; }; resample = derive { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; }; resemble = derive { name="resemble"; version="1.1.1"; sha256="0mz5mxm6p1drfx2s9dx35m2bnvirr8lkjjh5b4vdk9p2cdv1qkkv"; depends=[RcppArmadillo foreach iterators pls Rcpp Rcpp RcppArmadillo]; }; reshape = derive { name="reshape"; version="0.8.5"; sha256="08jm9fb02g1fp9vmiqmc0yki6n3rnnp2ph1rk8n9lb5c1s390f4k"; depends=[plyr]; }; reshape2 = derive { name="reshape2"; version="1.4.1"; sha256="0hl082dyk3pk07nqprpn5dvnrkqhnf6zjnjig1ijddxhlmsrzm7v"; depends=[plyr stringr Rcpp Rcpp]; }; reshapeGUI = derive { name="reshapeGUI"; version="0.1.0"; sha256="0kb57isws8gw0nlr6v9lg06c8000hqw0fvhfjsjyf8w6zwbbq3zs"; depends=[reshape2 plyr gWidgets gWidgetsRGtk2]; }; +restimizeapi = derive { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restlos = derive { name="restlos"; version="0.1-3"; sha256="03bsakp9kd8i468wz7xhdjqb6ck6p9wci3gk2b2bykv73c0g6n95"; depends=[som rgl geometry igraph]; }; restorepoint = derive { name="restorepoint"; version="0.1.5"; sha256="0xmpxprirnd1yavwk3vkc0cp715d187mn0amppya7kd47iw10wsy"; depends=[]; }; retimes = derive { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; }; retistruct = derive { name="retistruct"; version="0.5.10"; sha256="1wg2a906y09hcqba42hh9r2x59w35dms2aa5mw44avigc1nwm0s2"; depends=[foreign RImageJROI png ttutils sp geometry RTriangle rgl R_matlab]; }; retrosheet = derive { name="retrosheet"; version="1.0.2"; sha256="079rfc55sy315i7zhv1a8r6drgpiglbf3b4gwyria2mfbn94a5qb"; depends=[RCurl XML data_table stringi]; }; reutils = derive { name="reutils"; version="0.1.2"; sha256="0f2c6zxk6x2plq649b1ml6b112j6y8ys074pn30yw35ncg3h86fa"; depends=[assertthat RCurl XML]; }; -reval = derive { name="reval"; version="1.0"; sha256="14vzsg3azggfrm1cnrxigbhnpxpjifjf61r71hf73ggpspx2gj5r"; depends=[doParallel foreach]; }; +reval = derive { name="reval"; version="2.0.0"; sha256="1yxkyc6wdp5h3cp8i42a9cf0b1cwr4nmpd7svlp7bpfxlcnqqa0d"; depends=[doParallel foreach]; }; revealedPrefs = derive { name="revealedPrefs"; version="0.2"; sha256="1f871y4wkjznzgwxfbnmrfiafq43cyf0i5hjy68ybxc7bbvfryxc"; depends=[Rcpp Rcpp RcppArmadillo]; }; reweight = derive { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; rex = derive { name="rex"; version="1.0.1"; sha256="1k1s5rx3lpyh6apakaf4mw94y72zkxf14c2kj0d9njhf5j6g1sdj"; depends=[magrittr lazyeval]; }; @@ -5551,30 +5657,31 @@ rfUtilities = derive { name="rfUtilities"; version="1.0-1"; sha256="0y0jn4c5dpr9 rfigshare = derive { name="rfigshare"; version="0.3.6"; sha256="1n6i5ppn3v93126gvva8sn85v1h4f7hgc43pxja9bwr1ypmzgr45"; depends=[RJSONIO httr httpuv plyr yaml ggplot2 XML]; }; rfishbase = derive { name="rfishbase"; version="0.2-2"; sha256="09pa5zpw9rclf5pqj1wjjhdcblca9sm9xcs9ka3xfa7azj7n9ljd"; depends=[XML RCurl]; }; rfisheries = derive { name="rfisheries"; version="0.1"; sha256="1g0h3icj7cikfkh76yff84hil23rfshlnnqmgvnfbhykyr2zmk61"; depends=[httr data_table assertthat ggplot2 rjson]; }; -rfoaas = derive { name="rfoaas"; version="0.1.3"; sha256="0wdb645fx2wsy4vwz43d8ynwx3divpjwbkql52zkikyr8zv21gz5"; depends=[httr]; }; +rfoaas = derive { name="rfoaas"; version="0.1.6"; sha256="0wfpf6k0xsjzpabyziqyllksj1p9n6ix1lnk02mkz0bzl97hnilq"; depends=[httr]; }; rfordummies = derive { name="rfordummies"; version="0.1.1"; sha256="0k725wgba9132cfbm0ppgy476iyh9gcn6bdh9gjqab5sj3jb0iva"; depends=[]; }; rforensicbatwing = derive { name="rforensicbatwing"; version="1.3"; sha256="0ff4v7px4wm5rd4f4z8s4arh48hgayqjfpnni2997c92wlsq3d12"; depends=[Rcpp Rcpp]; }; rgabriel = derive { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; rgam = derive { name="rgam"; version="0.6.3"; sha256="0mbyyhhyr7ijv2sq9n7g0vaxivngwf4nbb5398xpsh7fxvgw5zdw"; depends=[Rcpp Rcpp RcppArmadillo]; }; rgauges = derive { name="rgauges"; version="0.2.0"; sha256="0p42hh32wcjcchsalpsan52kvz6nd1gw28xnydqgfzkzcqkl22dd"; depends=[ggplot2 lubridate plyr httr reshape2 gridExtra scales data_table]; }; -rgbif = derive { name="rgbif"; version="0.8.0"; sha256="1sdjlymymfc5chnrc5if0fvf64mjz6sc4071xsw2ja7zcdasxb40"; depends=[XML plyr ggplot2 maps httr rgeos sp data_table stringr whisker magrittr jsonlite]; }; +rgbif = derive { name="rgbif"; version="0.8.4"; sha256="13rcqqa19w3gzab4xg006kj7m5zj4x1hbxpam8yg1r3n9dad1bjz"; depends=[XML ggplot2 httr data_table whisker magrittr jsonlite V8]; }; rgcvpack = derive { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; }; -rgdal = derive { name="rgdal"; version="0.9-2"; sha256="0jzhjy3qnb9aimmwyssinbyxz49hzcfksmxhsqyz3g8868k946g5"; depends=[sp sp]; }; +rgdal = derive { name="rgdal"; version="0.9-3"; sha256="011vw2pgaxgbba0a0c5ha2n0haljbn00z5km13fhgqlvhhdhzd6n"; depends=[sp sp]; }; rgenoud = derive { name="rgenoud"; version="5.7-12"; sha256="17gzkn4laylnksy8h2w8c0whcxpchsx7bwjzk1q5sfqxswclqq0g"; depends=[]; }; -rgeos = derive { name="rgeos"; version="0.3-8"; sha256="0snbfxzh700fn415li0wia94zgb0x73vwdrbrpimvz9k3y43yvp8"; depends=[sp sp]; }; +rgeos = derive { name="rgeos"; version="0.3-11"; sha256="1x5fna4n5ck0wfdrplj5q5cvv289fzsmlr95q86na78lvwn14fzl"; depends=[sp sp]; }; rgexf = derive { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[XML Rook igraph]; }; rggobi = derive { name="rggobi"; version="2.1.20"; sha256="1a7l68h3m9cq14k7y96ijgh0iz3d6j4j2anxg50pykz20lnykr9g"; depends=[RGtk2]; }; rgl = derive { name="rgl"; version="0.95.1247"; sha256="1zmb09lljng1dmwd23w5ld8z9wr0xd0s365vz54il0ndwrqfhsi1"; depends=[]; }; -rglobi = derive { name="rglobi"; version="0.2.6"; sha256="042lc71j49bndlmcxmqdjly48qvqjpif7dgzk4cxsmbil5jmyzks"; depends=[rjson RCurl]; }; +rglobi = derive { name="rglobi"; version="0.2.8"; sha256="1033cmwairf4nm9r6nvi1ddgq0j9mzchlzvj1hph0vlcbb53ybqh"; depends=[rjson RCurl]; }; rgp = derive { name="rgp"; version="0.4-1"; sha256="1p5qa46v0sli7ccyp39iysn04yvq80dy2w1hk4c80pfwrxc6n03g"; depends=[emoa]; }; rgpui = derive { name="rgpui"; version="0.1-2"; sha256="0sh5wj4f2wj6g3r7xaq95q89n0qjavchi5kfi6sj1j34ykybbs3g"; depends=[rgp shiny emoa]; }; rgr = derive { name="rgr"; version="1.1.11"; sha256="01hlj3nqzfsffr4k7d3iyp4mfqs1sy94d0scy64wh9kkplrzkh4i"; depends=[MASS fastICA]; }; rgrass7 = derive { name="rgrass7"; version="0.1-0"; sha256="19fwf3gaq25x3imj9kc1112cf9dhafp0d1gjly2xh2gz1kam5wl6"; depends=[sp XML]; }; rhosp = derive { name="rhosp"; version="1.06"; sha256="0kii29w292kffxablqnmgvl127jwsriz0p5y5d1xd6n8yzji79j3"; depends=[]; }; ri = derive { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; -riceware = derive { name="riceware"; version="0.2"; sha256="1rd64saags4s7nadpbi38h8m8mw6y44lmdi8vmg58mglkfcbqf32"; depends=[random]; }; +riceware = derive { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive { name="rich"; version="0.3"; sha256="122xb729xlm8gyb7b3glw4sdvrh98wh89528kcbibpx83bp3frc0"; depends=[boot vegan permute]; }; ridge = derive { name="ridge"; version="2.1-3"; sha256="1i5klabnv328kgy7p11nwdid2x7hzl1j80yqqshbraladszyfpwk"; depends=[]; }; +ridigbio = derive { name="ridigbio"; version="0.2.2"; sha256="065pad7pprax1mgqikjrl4nygyw5mjr80j21072zb7qcki9ag2k5"; depends=[httr jsonlite]; }; rinat = derive { name="rinat"; version="0.1.4"; sha256="1m5k1wcinm6is3mf86314scgy3xfifz7ly7il5zgqyg9jkkpywbz"; depends=[httr plyr jsonlite ggplot2 maps]; }; rindex = derive { name="rindex"; version="0.12"; sha256="1k9zihvrp955c4lh70zjlsssviy2app8w6mv5ln4nawackbz0six"; depends=[regtest]; }; ringbuffer = derive { name="ringbuffer"; version="1.1"; sha256="1jj6zdvqlkc30bnxapg0sjl5ci5kq76611smqc4jc8adzhzwrh3f"; depends=[]; }; @@ -5589,15 +5696,16 @@ rite = derive { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq8 riv = derive { name="riv"; version="2.0-4"; sha256="1c9k62plqgxcgcm2j1s26hqvgww96n6bfjz2yk7m3p2wf8gkkyam"; depends=[MASS rrcov quantreg]; }; rivernet = derive { name="rivernet"; version="1.0"; sha256="0za5k00k9vivpq4wr1xqc4aw7mlcxhjj2b3iiip1qy13fg7bhbjm"; depends=[]; }; riverplot = derive { name="riverplot"; version="0.3"; sha256="1x02ci6744k3lsqh53vmpmv957b5wwr1idvn16nzixvzknixryq8"; depends=[]; }; -rivervis = derive { name="rivervis"; version="0.45.0"; sha256="0dc02m923l1y689rd13zxz1122l8cipr4m2cf2bw7pis7zr3m119"; depends=[]; }; +rivervis = derive { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; }; rivr = derive { name="rivr"; version="0.9.2"; sha256="1xz7l7j8adhlzdasx9ljrh8z6cx017pl6761z8q4ixpcgr3vf5ws"; depends=[Rcpp reshape2 Rcpp]; }; rjade = derive { name="rjade"; version="0.1"; sha256="0f1jljj6m1almz0na984n0g314y0rl6a0mx04rbrpipgfgz1h37c"; depends=[V8]; }; rjags = derive { name="rjags"; version="3-15"; sha256="02nmaqv0xddh7bgrlwrr30gb10mcz2f5lilbyzfw6wpjgi2aihx5"; depends=[coda]; }; rje = derive { name="rje"; version="1.9"; sha256="1dyd34z6lb0p6zmyax5dpzflgc9a4saka33mvdfcxi5pj0rnygaz"; depends=[]; }; rjson = derive { name="rjson"; version="0.2.15"; sha256="1vzjyvf57k1fjizlk28rby65y5lsww5qnfvgnhln74qwda7hvl3p"; depends=[]; }; -rjstat = derive { name="rjstat"; version="0.2"; sha256="1ylwp6d3cc8xb8129yr49grx9vb4xyp62ig0qa7vzkbdplba2zr2"; depends=[jsonlite assertthat]; }; +rjstat = derive { name="rjstat"; version="0.2.1"; sha256="0chb3mypmgqz7wncl01yy93xpz1mmlcc6x1cib37zxc8dy79jm1s"; depends=[jsonlite assertthat]; }; rkafka = derive { name="rkafka"; version="1.0"; sha256="02h3nlffgd48xm38i2arlrgbilraf6r7k65s35906v33i0kjzrgg"; depends=[rJava RUnit rkafkajars]; }; rkafkajars = derive { name="rkafkajars"; version="1.0"; sha256="0ss9gjjq92hba6nkhnda0pbm3a5bqm00hy0zbj4kivg5dlsf30q0"; depends=[rJava RUnit]; }; +rknn = derive { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive { name="rkt"; version="1.4"; sha256="01c8fwnml1n0sw5lw9p2nz15i1zhxirr0kh39qvjmdiw97c1v1yq"; depends=[]; }; rkvo = derive { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp Rcpp]; }; rlecuyer = derive { name="rlecuyer"; version="0.3-3"; sha256="1n0vny3k5s5152y0ggz9vfn4bqay9ncbdzkw9g4703pszrbwq7xh"; depends=[]; }; @@ -5635,10 +5743,10 @@ robust = derive { name="robust"; version="0.4-16"; sha256="0psai9d6w7yi0wfm57cc7 robustDA = derive { name="robustDA"; version="1.1"; sha256="1yys6adkyms5r4sw887y78gnh97qqr7sbi5lxv5l9bnc4ggcfiz6"; depends=[MASS mclust Rsolnp]; }; robustHD = derive { name="robustHD"; version="0.5.0"; sha256="14ql2k5880lbwkv1acydrli6jyh6dls32jjhimbz82zzkzfk2cxr"; depends=[ggplot2 perry robustbase MASS Rcpp RcppArmadillo]; }; robustX = derive { name="robustX"; version="1.1-4"; sha256="1s2aav2jr22dgrl7xzk09yn9909k76kpiz271w5r1id6hpfprjwc"; depends=[robustbase]; }; -robustbase = derive { name="robustbase"; version="0.92-3"; sha256="0b7rld5pa9nrnqj7600ybvzy74lxz6s41dibamwdssh36mx6ayvb"; depends=[DEoptimR]; }; +robustbase = derive { name="robustbase"; version="0.92-4"; sha256="0dyz2wwfjq8bjjwi4fhm6v3sxmlh34bawppakl4l6dv7vpjsv85k"; depends=[DEoptimR]; }; robustfa = derive { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[Rcpp RcppArmadillo mgcv robustbase Rcpp RcppArmadillo]; }; -robustlmm = derive { name="robustlmm"; version="1.6"; sha256="18lhbnmcd6nc0qr23a19mhw9k9r30li6z92g600dil6ll8s5m54z"; depends=[lme4 Matrix ggplot2 lattice nlme robustbase xtable]; }; +robustlmm = derive { name="robustlmm"; version="1.7-2"; sha256="0cwr5fsl3m78xvfv3cy6n82zsdwsyq2zrlnzdppba9ja6hnh32wm"; depends=[lme4 Matrix ggplot2 lattice nlme robustbase xtable]; }; robustloggamma = derive { name="robustloggamma"; version="0.4-31"; sha256="19ycdvpzns46gjnkddwznnszs0941blpss7l0cqligv91cz7bkjc"; depends=[robustbase]; }; robustreg = derive { name="robustreg"; version="0.1-7"; sha256="1nrz10065mwccil78c74vmkhinskpnk1vyp1ikrdw23vyk2l00nc"; depends=[Rcpp Matrix Rcpp RcppArmadillo]; }; robustvarComp = derive { name="robustvarComp"; version="0.1-2"; sha256="187mcpih509hx15wjjr7z2h6h76mz2v0d8xgsxjd8wz7l3dnlp2f"; depends=[robustbase GSE numDeriv robust plyr]; }; @@ -5650,6 +5758,7 @@ rootSolve = derive { name="rootSolve"; version="1.6.5.1"; sha256="02ydj4ydgljs80 ropensecretsapi = derive { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RJSONIO RCurl]; }; ror = derive { name="ror"; version="1.2"; sha256="0n8mk35rm3rp0c7a3i961kij21a177znh9hkq4snqqlw9vf50hdg"; depends=[rJava ROI ROI_plugin_glpk igraph]; }; rorutadis = derive { name="rorutadis"; version="0.1.3"; sha256="0ik0dpmsyb4g9wl1fb7mm0dry9s26nfvv1v91cslss82phhf16wd"; depends=[Rglpk ggplot2 gridExtra]; }; +rotationForest = derive { name="rotationForest"; version="0.1"; sha256="07my0i84jvmjxvg2ifvsrbc0r5z4s32xi0vfdwrkhhdzdn87h527"; depends=[rpart]; }; rotations = derive { name="rotations"; version="1.3"; sha256="01qqiqlp370llk8w9g0nip08cd54rj9dsvf0qxznalyb7vpnvgxf"; depends=[ggplot2 Rcpp rgl sphereplot Rcpp RcppArmadillo]; }; roughrf = derive { name="roughrf"; version="1.0"; sha256="0nwdynqfb9yzjvi1lykgdkch3b4g09aj8vbd6sf5pyx473s066y4"; depends=[randomForest mice nnet]; }; rowr = derive { name="rowr"; version="1.1.2"; sha256="1hvj17n3fy1jaaz551s1icjv1kgr2s22xvg4fllzs8hpgdsybp1j"; depends=[]; }; @@ -5661,13 +5770,14 @@ rpart_plot = derive { name="rpart.plot"; version="1.5.2"; sha256="0aw0bhd0bliih7 rpart_utils = derive { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; }; rpartScore = derive { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; }; rpartitions = derive { name="rpartitions"; version="0.1"; sha256="1gklsi4pqhk16xp9s49n1lr9ldm1vx61pvphjqsqkzrlxwcpx3j8"; depends=[hash]; }; -rpf = derive { name="rpf"; version="0.44"; sha256="1q68lb7cw4p31mrjwxyn2bkpclmgfcnln8z0brs9pkkh70j0vii8"; depends=[mvtnorm RcppEigen]; }; +rpf = derive { name="rpf"; version="0.45"; sha256="1d22wjhv14rl16kljn42j4hba30x28zd5svddrpxp1kraxjq5mn7"; depends=[mvtnorm RcppEigen]; }; rpg = derive { name="rpg"; version="1.4"; sha256="0sisn5l1qxlqg6jq4lzr7w3axkaw5jlpz8vl9gp2hs0spxsjhcyn"; depends=[Rcpp uuid RApiSerialize Rcpp RApiSerialize]; }; rphast = derive { name="rphast"; version="1.6"; sha256="0ni8969bj3pv0wl8l0v352pqw2d5mlshsdw1rb6wlxk7qzfi5cl2"; depends=[]; }; -rplexos = derive { name="rplexos"; version="1.0"; sha256="129izg9ipn2pfm4yq0lg597nn9rcxr8m9yslmra85jmzbisc1vfw"; depends=[Rcpp dplyr RSQLite DBI data_table lubridate reshape2 stringi assertthat doParallel foreach Rcpp]; }; +rplexos = derive { name="rplexos"; version="1.1.1"; sha256="1s3srk5f1ciy43vblwsy7wrwp2k2j5q52dfl4vjg69i63bh9yrpf"; depends=[Rcpp dplyr RSQLite DBI data_table tidyr lubridate stringi doParallel foreach Rcpp]; }; rplos = derive { name="rplos"; version="0.4.7"; sha256="0d6p6cgjmfv615mpvp6vxm92gxfdi6fn4mp0ixhj2gkm1hmpwwc5"; depends=[ggplot2 httr jsonlite XML dplyr plyr lubridate reshape2 whisker solr]; }; rplotengine = derive { name="rplotengine"; version="1.0-5"; sha256="1wwpfnr5vi8z26alm8y5gply0y4iniagimldzy2z696djzz8p8p8"; depends=[xtable]; }; rportfolios = derive { name="rportfolios"; version="1.0"; sha256="1zcv5ddmk15l0p03nlffimlhhpcc7l1c05xl2d1xlfk58rkvqns6"; depends=[]; }; +rprime = derive { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[stringr stringi plyr assertthat]; }; rprintf = derive { name="rprintf"; version="0.1-2"; sha256="1jsn6i3ikcdbrg8g89hmb1ky3a84fykx5gpnbswplhidh2qhb9jz"; depends=[stringr]; }; rpsychi = derive { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; rpubchem = derive { name="rpubchem"; version="1.5.0.2"; sha256="0lvi7m8jb2izsfia3c0qigsd1k1x9r02gymlwfg29pb8k10lwcjf"; depends=[XML car RCurl RJSONIO]; }; @@ -5680,22 +5790,23 @@ rrcov = derive { name="rrcov"; version="1.3-8"; sha256="0f71khnsvd95yh6y1hnl62vq rrcovHD = derive { name="rrcovHD"; version="0.2-3"; sha256="18k5c590wbi0kmx4nl1mkv7h6339as0s4jcr9am8v9v3w4pn0xni"; depends=[rrcov robustbase pls spls pcaPP]; }; rrcovNA = derive { name="rrcovNA"; version="0.4-7"; sha256="1b3ffcs1szwswsayz8q3w87wndd7xbcg5rqamhjr2damgialx3bq"; depends=[rrcov robustbase lattice cluster norm]; }; rredis = derive { name="rredis"; version="1.6.9"; sha256="00fgrhyj6bai0kc18c2m1fsk9ja5c9q7m6dpsb8wsn4gs79mw3sc"; depends=[]; }; +rriskDistributions = derive { name="rriskDistributions"; version="2.1"; sha256="1sc0bj5sivclbq0grif99vclnlhg1k9dz4xdvng6vv392xkwbmfd"; depends=[mc2d eha msm tkrplot]; }; rrlda = derive { name="rrlda"; version="1.1"; sha256="06n9jah190cz25n93jlb5zb0xrx91bjvxgswwdx9hdf0fmwrpkvz"; depends=[pcaPP mvoutlier glasso matrixcalc]; }; rrules = derive { name="rrules"; version="0.1-0"; sha256="0f9msp289akzricjrm8dvfbh2dihfbszr7ms4fld1cr30zssajin"; depends=[]; }; rsae = derive { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; rsatscan = derive { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; -rscala = derive { name="rscala"; version="1.0.4"; sha256="05pgyzin0d5lfz5rjf0c0j7b2zj7b8r1blgd126kjlvjkj1spy84"; depends=[]; }; +rscala = derive { name="rscala"; version="1.0.6"; sha256="065ll2xza09hi05w4hq35jl6y1nvwrv93ld983nxaji81z9pfgzx"; depends=[]; }; rscproxy = derive { name="rscproxy"; version="2.0-5"; sha256="1bjdv7drlnffcnyc0j8r22j7v60k1xj58bw8nk9l8wvnmngrjz86"; depends=[]; }; rsdepth = derive { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; rsdmx = derive { name="rsdmx"; version="0.4-6"; sha256="0hsf0jkp31qfvl4pxaqxwz1fvwgmqld3rnbk9g29g5bqwld40syc"; depends=[XML RCurl plyr]; }; rseedcalc = derive { name="rseedcalc"; version="1.2"; sha256="1di9bzwxyxm9gs14ks9z6sixi656hz9xwmq3aaqh53cjjr1ka0rc"; depends=[]; }; -rsem = derive { name="rsem"; version="0.4.5"; sha256="02vccj03bxisi2jwl31rwi4gw9i26g70aagdgg5gk8z0bys78v4d"; depends=[MASS lavaan]; }; +rsem = derive { name="rsem"; version="0.4.6"; sha256="16nsbp4s20396h2in0zymbpmsn24gqlbik0vgv86zhy1yg1rz9ia"; depends=[MASS lavaan]; }; rsgcc = derive { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene stringr snowfall]; }; rsig = derive { name="rsig"; version="1.0"; sha256="129k78i8kc30bzlphdb68vv3sw2k6xyiwrhw08vhzz6mf3jxlqsh"; depends=[survival BBmisc glmnet superpc Matrix]; }; -rsm = derive { name="rsm"; version="2.07"; sha256="0d1kymgmprp41xvax6c5k881dxjgf6bnvpl4mh9l1pnjdcq7pyi5"; depends=[]; }; +rsm = derive { name="rsm"; version="2.7-2"; sha256="0pn018n36h1xhhlsimggbfgfgl9nh5a49x8amkqy3drrnamjl577"; depends=[]; }; rsml = derive { name="rsml"; version="1.2"; sha256="1w9bqs32sn5ry5qjgnqnns56ylr59cq5kczjsssw3yvc8a8lr39x"; depends=[XML rgl]; }; rsnps = derive { name="rsnps"; version="0.1.6"; sha256="1pqdmg1cwpm0cvr5ma7gzni88iq5kqv1w40v8iil3xvcmns8msjk"; depends=[plyr stringr httr RCurl XML jsonlite]; }; -rspa = derive { name="rspa"; version="0.1-6"; sha256="0zwmcjakpir8mvy8cvy8j85gar4s7gmizxc3z4mdrc4iadps9gqd"; depends=[editrules]; }; +rspa = derive { name="rspa"; version="0.1-7"; sha256="0hmdfj1cgy9fjfbrs8qvx79fkv5v1xr6vrwjp89lq0blhsnzn5k2"; depends=[editrules]; }; rspear = derive { name="rspear"; version="0.1-2"; sha256="1rjg84plnvlcp3p2929f1afl43lb92d3bfsvlhsaw92z7iva1vad"; depends=[plyr]; }; rstackdeque = derive { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; rstiefel = derive { name="rstiefel"; version="0.10"; sha256="0b2sdgpb3hzal34gd9ldd7aihlhl3wndg4i4b3wy6rrrjkficrl1"; depends=[]; }; @@ -5717,12 +5828,12 @@ rtype = derive { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qd rucm = derive { name="rucm"; version="0.4"; sha256="1s3q6wfp9nb50rqsaq6h2wb48qvxncmlf8l4gm18pr25wkangfxq"; depends=[KFAS]; }; rugarch = derive { name="rugarch"; version="1.3-4"; sha256="1za92hqfaws8azf2zml1q8mlbirrdw3rb4rvwg6sclfx7z7gsqkh"; depends=[Rsolnp nloptr ks numDeriv spd xts zoo chron SkewHyperbolic expm Rcpp Rcpp RcppArmadillo]; }; runjags = derive { name="runjags"; version="2.0.1-4"; sha256="1any5f7paf8a8yyvk594iixvh1l1dc87pil292sd1pq1lh2510lw"; depends=[lattice coda]; }; -ruv = derive { name="ruv"; version="0.9.4"; sha256="07bvyqrkm10vh63l8dm93spd7l0v105a87lsbjw4vg65czp1iayg"; depends=[]; }; +ruv = derive { name="ruv"; version="0.9.5"; sha256="19n2zrbfg6kzks395iiv1wbz2zf1j25aap3iy3d8yspmasqxi93x"; depends=[]; }; rv = derive { name="rv"; version="2.3.1"; sha256="0bjqwk7djl625fws3jlzr1naanwmrfb37hzkyy5szai52nqr2xij"; depends=[]; }; rvHPDT = derive { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive { name="rvalues"; version="0.3"; sha256="0fkf0gngrx1rfa67blzf3xxjwhlp2m2jplxw3z3j9vgl6ray0nqs"; depends=[]; }; -rversions = derive { name="rversions"; version="1.0.0"; sha256="0k9v77bpxbxxmf5bdansg074zx3cm4hhaw6vl9f6c58xzxl567nf"; depends=[RCurl XML]; }; +rversions = derive { name="rversions"; version="1.0.1"; sha256="1qqar1cg8218dr4hp09629jx6yvwcnwxzp8grnqcmhbc5xyx76ch"; depends=[curl xml2]; }; rvertnet = derive { name="rvertnet"; version="0.2.2"; sha256="14afdf0mflpa2arxdy44y8mak9j3cg2cgk97idd7k4pi8vf6q0jg"; depends=[plyr jsonlite httr data_table ggplot2 maps]; }; rvest = derive { name="rvest"; version="0.2.0"; sha256="1bg9l0wzh9xs7rpacl8s6q33hkjvv85vsl8079qsri0lr856wni7"; depends=[httr XML selectr magrittr]; }; rvgtest = derive { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; }; @@ -5741,7 +5852,7 @@ sGPCA = derive { name="sGPCA"; version="1.0"; sha256="16aa5jgvkabrlxaf1p7ngrls79 sROC = derive { name="sROC"; version="0.1-2"; sha256="0cp6frhk9ndffb454dqp8fzjrla76dbz0mn4y8zz1nbq1jzmz0d3"; depends=[]; }; sac = derive { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9x0g0w2z4haw5xmxfni72ms8w"; depends=[]; }; saccades = derive { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; }; -sadists = derive { name="sadists"; version="0.2.0"; sha256="156a1xzii2nkfismwbrfli5yxz52alpkqdi7maqlx9b1qrpybmhs"; depends=[PDQutils hypergeo orthopolynom]; }; +sadists = derive { name="sadists"; version="0.2.1"; sha256="0m3rlbhgzl0xvx8bcaswbi9nsrgfhdmkywx7ynayl6q0lmslhk6a"; depends=[PDQutils hypergeo orthopolynom]; }; sads = derive { name="sads"; version="0.1.10"; sha256="02662vbbk3jikp506ljil9zqchs6bq3lsw4fwbbi2wgg7xvb260g"; depends=[MASS bbmle poilog VGAM untb]; }; sae = derive { name="sae"; version="1.0-5"; sha256="05jvzq4cqb78pgdlxf8vlanx3v10n5njlw7g666nrnziy9ak8z4f"; depends=[nlme MASS]; }; sae2 = derive { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; }; @@ -5750,7 +5861,7 @@ saemix = derive { name="saemix"; version="1.2"; sha256="1whwn54iiapdfig6qpzji3z3 saery = derive { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; safi = derive { name="safi"; version="1.0"; sha256="1km58w57kdmyfj4a97zhnjcka4q4pxm8r2br01qq2niaihpbzp98"; depends=[]; }; -sampSurf = derive { name="sampSurf"; version="0.7-2"; sha256="1bj1m5c8bx8i4jyk6kdgcfmgfj15iirxwg259r0c4fk7whcnfz59"; depends=[sp raster rasterVis boot]; }; +sampSurf = derive { name="sampSurf"; version="0.7-3"; sha256="165y2z9bhf7cyrh177fk87apqpgzyn69gf53f9mmii931cyykihw"; depends=[sp raster rasterVis boot]; }; sampleSelection = derive { name="sampleSelection"; version="1.0-2"; sha256="1hzvvwvqp6v9d6ldm17kx3g8pbgngw2pxklny0b3man47zh5jshc"; depends=[maxLik miscTools systemfit Formula]; }; samplesize4surveys = derive { name="samplesize4surveys"; version="2.4.0.900"; sha256="199g2gsbv1w1acn7nnlv2wbrhq7lc1mx8vvs1w9a9a8dkxdmml0g"; depends=[TeachingSampling]; }; sampling = derive { name="sampling"; version="2.6"; sha256="11r8p29kwc0ggycbv7sm1zmazmfm4p5207l764ad4znjib0cab6p"; depends=[MASS lpSolve]; }; @@ -5785,25 +5896,26 @@ schwartz97 = derive { name="schwartz97"; version="0.0.6"; sha256="0l34f30l75zrg3 scidb = derive { name="scidb"; version="1.2-0"; sha256="17y1bml8kb896l3hsw356qdj25sfbdvm10dyxhaafdgcbp5ywcrn"; depends=[Matrix iterators RCurl zoo digest]; }; scio = derive { name="scio"; version="0.6.1"; sha256="0h15sscv7k3j7qyr70h00n58i5f44k96qg263mxcdjk9mwqr0y65"; depends=[]; }; sciplot = derive { name="sciplot"; version="1.1-0"; sha256="0na4qkslg3lns439q1124y4fl68dgqjck60a7yvgxc76p355spl4"; depends=[]; }; +score = derive { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; scoring = derive { name="scoring"; version="0.5-1"; sha256="0vxjcbp43h2ipc428qc0gx7nh6my7202hixwhnmspl4f3kai3wkp"; depends=[]; }; scout = derive { name="scout"; version="1.0.3"; sha256="0wmjmk0ckd211cq5ykd0yzjschs7fkg04w67arl4pwma0z5z56lq"; depends=[glasso lars]; }; scrapeR = derive { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[XML RCurl]; }; scrime = derive { name="scrime"; version="1.3.3"; sha256="1vp7ai10m0f3s0hywyqh0yllxj6z6p795zqpr6vp58fh6yq20x73"; depends=[]; }; scriptests = derive { name="scriptests"; version="1.0-15"; sha256="1f55rnz4zbywyn79l2ac2600k95fwxgnyh1wzxvyxjh4qcg50plv"; depends=[]; }; -scrm = derive { name="scrm"; version="1.5.0-1"; sha256="176k3qmlfs1cj8gm421p3hivs434xvm6ch3gva7x7766vz5mxi39"; depends=[Rcpp Rcpp]; }; +scrm = derive { name="scrm"; version="1.6.0-2"; sha256="1a3m56j4ca526mjhc7h0967k5bja336dw1bpna119l5yic6hkc1n"; depends=[Rcpp Rcpp]; }; scrypt = derive { name="scrypt"; version="0.1.0"; sha256="1hc1rziigwggdx2pvklldkw88mdzbwa8b8a2a0ip4cm1w6flsl9n"; depends=[Rcpp Rcpp]; }; scuba = derive { name="scuba"; version="1.7-0"; sha256="11mdc8pj552ag36ib4sfbjv8r0psa6wnb13spz0v3rbaslz25hpw"; depends=[]; }; sda = derive { name="sda"; version="1.3.6"; sha256="1igdkgpxlni4d8h5k912aikbd66jqkabzq144xlgd2vp3kcbw4ly"; depends=[entropy corpcor fdrtool]; }; sdcMicro = derive { name="sdcMicro"; version="4.5.0"; sha256="1cz34g6si7f8kgybcvcsr0lkcspqp3vrkvfqsfdjd0mb8lv5pbjj"; depends=[brew knitr data_table xtable car robustbase cluster MASS e1071 Rcpp sets Rcpp]; }; sdcMicroGUI = derive { name="sdcMicroGUI"; version="1.2.0"; sha256="0bhrpric17y1ljm18a00i6bkxfq1cpljfkib8qbb4jyj5s50f3ps"; depends=[sdcMicro gWidgetsRGtk2 gWidgets cairoDevice vcd foreign Hmisc]; }; -sdcTable = derive { name="sdcTable"; version="0.18.0"; sha256="13k96ahz6vzvbnvca18p0r1pv9k6sdmxbq04cf76an7r2g4w6kji"; depends=[stringr Rcpp Rglpk lpSolveAPI data_table Rcpp]; }; +sdcTable = derive { name="sdcTable"; version="0.18.1"; sha256="18l6d6q6pawvswj1v9mfmcg4m94dkp38yd2mnndz9l7qmvf6n7kx"; depends=[stringr Rcpp Rglpk lpSolveAPI data_table Rcpp]; }; sdcTarget = derive { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[magic foreach doParallel tuple]; }; sddpack = derive { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; sde = derive { name="sde"; version="2.0.13"; sha256="194dkwrww9win5chhlffjv1xkhpxx2bcv6hf81xaqk7pdf7ifj80"; depends=[MASS fda zoo]; }; sdef = derive { name="sdef"; version="1.5"; sha256="1xmx3nfjjfh6zw1vq7iip4rnshh40azja83xyvnz04jcv574vhxm"; depends=[]; }; sdmvspecies = derive { name="sdmvspecies"; version="0.3.1"; sha256="1rpbj55598862vb4bwrvcbskm10xibsvx58fpvkn58zbm6ab2534"; depends=[GPArotation ggplot2 psych raster]; }; sdnet = derive { name="sdnet"; version="2.03.3"; sha256="1884pil3brm7llczacxda6gki501ddyc5m8ggqjix64kbvw37slv"; depends=[]; }; -sdprisk = derive { name="sdprisk"; version="1.1-0"; sha256="03nbvrrgzcnczj1zsnqakjy278bg15vva6yb35clks5zyipl0qdk"; depends=[numDeriv PolynomF rootSolve]; }; +sdprisk = derive { name="sdprisk"; version="1.1-3"; sha256="1rwzi112fjckzxmhagpg60qm9a35fqx8g8xaypxsmnml6q00ysiq"; depends=[numDeriv PolynomF rootSolve]; }; sdtoolkit = derive { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; sdwd = derive { name="sdwd"; version="1.0.1"; sha256="1df8xx538ba3axi0jbkvyrdl7qnmkvh1x15kh57jmw3qbpf5gh56"; depends=[Matrix]; }; seacarb = derive { name="seacarb"; version="3.0.6"; sha256="0xhyy8nd20f29j9y3x250fq8qp57gdv61gg4ck24v4jbl8qvwhla"; depends=[oce]; }; @@ -5823,13 +5935,15 @@ seewave = derive { name="seewave"; version="1.7.6"; sha256="1sh2i9hb8v0awhczvkj8 seg = derive { name="seg"; version="0.5-1"; sha256="0gsdbq7b5wpknhlilrw771japr63snvx4vpirvzph4fjyby1c7rg"; depends=[sp splancs]; }; segmag = derive { name="segmag"; version="1.2.2"; sha256="130saznhssg0qsc34fcw80x92mmqhjgizrb4fxpjsg7a8jjrclp8"; depends=[Rcpp Rcpp]; }; segmented = derive { name="segmented"; version="0.5-1.1"; sha256="0rkbhg8wwqk08jfd29sh4ifx427kmd4mfqrssllckha9hcglqhz7"; depends=[]; }; +seismic = derive { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; }; seismicRoll = derive { name="seismicRoll"; version="1.0.1"; sha256="1lls2gbx994j7y3kwpf00ngga5qlzqxwc3cy9x21gy9iq2s8hn0x"; depends=[Rcpp Rcpp]; }; selectMeta = derive { name="selectMeta"; version="1.0.7"; sha256="1ibiiddl9km8dahfc3kdpl42k43fx4mqgqibxgv5q8zbcp2829p9"; depends=[DEoptim]; }; selectiongain = derive { name="selectiongain"; version="2.0.40"; sha256="1xzvz747242wfv789dl3gqvgbc8l1c4i2r3p95766ypcjw51j55d"; depends=[mvtnorm]; }; selectr = derive { name="selectr"; version="0.2-3"; sha256="1ppm1f6mwfwbq92iwacyjn46k1d8148j4zykmjvw8as6c8blgap1"; depends=[XML stringr]; }; selectspm = derive { name="selectspm"; version="0.1"; sha256="0bihyjaacpyjnm5vznix8krw2sqmy62in33hmb5yj4yidwz1gpv0"; depends=[spatstat ecespa]; }; +selfea = derive { name="selfea"; version="1.0"; sha256="02ncccyjgdpp9hkd278jg8x1c3566fqhfmmh423596b1slzs8gqm"; depends=[pwr MASS plyr]; }; selfingTree = derive { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; -sem = derive { name="sem"; version="3.1-5"; sha256="093kklhl9fnawpwj3km1q0px6fm40kc3vg7kw93y3yb6hniwla35"; depends=[matrixcalc]; }; +sem = derive { name="sem"; version="3.1-6"; sha256="1gx0j3ignpmgy3qvnp0qjmhlzbxj0wjfr6jfs9d29cnq8b38p73c"; depends=[matrixcalc MASS boot mi DiagrammeR]; }; semGOF = derive { name="semGOF"; version="0.2-0"; sha256="1lsv72yaza80jqadmah7v2cpfqfay57y12hcz6brvia6bmr5qagb"; depends=[sem MASS matrixcalc]; }; semPLS = derive { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; semPlot = derive { name="semPlot"; version="1.0.1"; sha256="0sdp970qb4mz5vzncfmqxvg1z12gmiyqi3yaz9x2drm3rgzavy83"; depends=[qgraph lavaan sem plyr XML igraph lisrelToR rockchalk colorspace corpcor]; }; @@ -5853,18 +5967,18 @@ seqMeta = derive { name="seqMeta"; version="1.5"; sha256="1igag08qkfvkx83w6jjyfm seqPERM = derive { name="seqPERM"; version="1.0"; sha256="1i8ai4gxybh08wxjh96m6xlqxhh7ch0xihjs879snmy4zqfi0pap"; depends=[]; }; seqRFLP = derive { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; seqinr = derive { name="seqinr"; version="3.1-3"; sha256="0bbjfwbqg74wsamb3iz01g0ssdpdpg65gh00y9xlnpk4wb990n4n"; depends=[ade4]; }; -seqminer = derive { name="seqminer"; version="3.4"; sha256="1fl7mmqs3y0vpfhqss7syafwli67jwha703fyailxixq7djvwf9f"; depends=[stringr]; }; +seqminer = derive { name="seqminer"; version="4.2"; sha256="026minlmqf4n6pznkzkm6daqa7pj7hmis0i2azdy2m56a9hkj52z"; depends=[stringr]; }; seqmon = derive { name="seqmon"; version="0.2"; sha256="075hc6vgl1w3nisrihf5w6mkkg9q601jsqxm9hk9yagyvvd7d78w"; depends=[]; }; sequences = derive { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp Rcpp]; }; sequenza = derive { name="sequenza"; version="2.1.1"; sha256="0vrdmfy8qyzjflyl5skcy9mazl56py5gzb1kn1xh2hiv3mshdrfx"; depends=[squash]; }; -seriation = derive { name="seriation"; version="1.0-14"; sha256="0a7m1x6dhk00wh6djiz75x462y06fammr7fd2z8ks32migsbbvpp"; depends=[TSP cluster gclus colorspace MASS]; }; -seroincidence = derive { name="seroincidence"; version="1.0.3"; sha256="1qk11xrv2qnw3wmcg357m9nbnc1qr3wl2nznj8xw10r3jc1736s8"; depends=[]; }; +seriation = derive { name="seriation"; version="1.1-0"; sha256="0lbkv005ws4khwp12mygrpvxxdz8g5a7q2xl62k43sz6vj7cp8cn"; depends=[TSP cluster gclus colorspace MASS gplots registry]; }; +seroincidence = derive { name="seroincidence"; version="1.0.4"; sha256="0m3hlbv3277qyhqi3liwbna7czd6kdc7gqaxc7xn5x8d2hsc45hk"; depends=[]; }; servr = derive { name="servr"; version="0.2"; sha256="0gah99snaj8lk5zfzbxi3jwvpnlff9diz9gqv4qalfxpmb7fp6lc"; depends=[mime httpuv jsonlite]; }; sesem = derive { name="sesem"; version="1.0.1"; sha256="0s4xkv6bc5nxhj09mk9agnj11b9h7swccs9jrn4lg3fy12vqhf5a"; depends=[lavaan mgcv gplots]; }; session = derive { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; setRNG = derive { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; sets = derive { name="sets"; version="1.0-14"; sha256="1wfg4yc3p7zqcj2z3lb5knv6l3lw4pf20s3rkpz4yj4nsb41zs4g"; depends=[]; }; -settings = derive { name="settings"; version="0.2.1"; sha256="0dxnysa3857d141rk46pyfkbgzk6ms3fhb2bz0y41jy72bdhxmrm"; depends=[]; }; +settings = derive { name="settings"; version="0.2.2"; sha256="0bssy42kkb1aww9yndkyw3bj1jn3akvwsvhj0cz16r3a7jfcav7h"; depends=[]; }; setwidth = derive { name="setwidth"; version="1.0-3"; sha256="1s6m24kmkafscgibgfldm70m57bv4gs0m7fdki18nwdi1rvwpkbf"; depends=[]; }; severity = derive { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; sfa = derive { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; @@ -5874,18 +5988,18 @@ sgPLS = derive { name="sgPLS"; version="1.2"; sha256="1q3pf4sfh8l2qwxm0qd3sg29kv sgd = derive { name="sgd"; version="0.1"; sha256="16jqzshkg1n1azyfjadyg454ar0hk2dmw9ba1wrn6rh7mxsngik6"; depends=[Rcpp MASS Rcpp RcppArmadillo BH]; }; sgeostat = derive { name="sgeostat"; version="1.0-25"; sha256="04zl932s6zb26r42h2l8qf3d43bmrq67281mrkh4spn4vcddv5da"; depends=[]; }; sglOptim = derive { name="sglOptim"; version="1.0.122.1"; sha256="0ld53rdxai85r9hwz9jrsxr08lxin0ksxa6823r7cr96w18c1ssm"; depends=[Matrix Rcpp RcppProgress RcppArmadillo BH]; }; -sglasso = derive { name="sglasso"; version="1.2"; sha256="1y2ms6p792klzmy3prhsyanlbp7n004di9hscma7ih3jx9703wsr"; depends=[Matrix igraph]; }; +sglasso = derive { name="sglasso"; version="1.2.1"; sha256="18dag7wvz0l959igg4g77psi8idvqyikg676yy9ga3k69kl11hdk"; depends=[Matrix igraph]; }; sglr = derive { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; sgof = derive { name="sgof"; version="2.2"; sha256="087f4nbx9ppzi5za3f4w4msq2gd3r08v16fihppa30nqydg3ssbj"; depends=[poibin]; }; sgr = derive { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive { name="sgt"; version="1.1"; sha256="0j4xxh5lypcl0hyfx7gzrhb40z36ygn97hf1nl6m8wj4dncg39jf"; depends=[maxLik]; }; shape = derive { name="shape"; version="1.4.2"; sha256="0yk3cmsa57svcvbnm21pyr0s0qbhnllka8nmsg4yb41frjlqph66"; depends=[]; }; -shapeR = derive { name="shapeR"; version="0.1-3"; sha256="12j6qawnhv7i1488wkh8shm3shzi7g58r8pk9p10lm0bwi59l2l8"; depends=[gplots jpeg pixmap wavethresh vegan MASS]; }; +shapeR = derive { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg pixmap wavethresh vegan MASS]; }; shapefiles = derive { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; }; shapes = derive { name="shapes"; version="1.1-10"; sha256="038xps6f8b6w9qa9csqk33ggmb311h5zxwsxr027bd95a3vmyijx"; depends=[scatterplot3d rgl MASS]; }; sharpshootR = derive { name="sharpshootR"; version="0.7-2"; sha256="04plsgmyil6znmcqx2j78n2vjj4y4mprb3wqbhwagapdhvp9rcis"; depends=[aqp ape soilDB igraph cluster lattice latticeExtra vegan sp reshape2 Hmisc scales circular RColorBrewer plyr]; }; sharx = derive { name="sharx"; version="1.0-4"; sha256="1flcflx6w93s8bk4lcwcscwx8vacdl8900ikwkz358jbgywskd5n"; depends=[Formula dcmle dclone]; }; -shiny = derive { name="shiny"; version="0.11.1"; sha256="1aplb2wvgsbg6hhjsyjjhd8qbj11yrzm10rr812lzpiavd9wjn3w"; depends=[httpuv mime RJSONIO xtable digest htmltools R6]; }; +shiny = derive { name="shiny"; version="0.12.0"; sha256="1mv2l2jlayg8jwr2710mp5awazdxbmq2vz8ld1jr2apq9irai14l"; depends=[httpuv mime jsonlite xtable digest htmltools R6]; }; shinyAce = derive { name="shinyAce"; version="0.1.0"; sha256="1031hzh647ys0d5hkw7cqxj0wgry3rxgq95fgs7slbm0rgx9g6f7"; depends=[shiny]; }; shinyBS = derive { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[shiny htmltools]; }; shinyFiles = derive { name="shinyFiles"; version="0.6.0"; sha256="08cvpvrsr1bh0yh17ap20bmwxa4bsan3h6bicrxzanl2dlwp8kvr"; depends=[shiny htmltools RJSONIO]; }; @@ -5893,11 +6007,11 @@ shinyRGL = derive { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk6 shinyTree = derive { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; }; shinybootstrap2 = derive { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; shinydashboard = derive { name="shinydashboard"; version="0.4.0"; sha256="0my1bz983ncnvljhz6d25q9bqc510q9dgl9wzcg8c0civyjaps39"; depends=[shiny htmltools]; }; -shinyjs = derive { name="shinyjs"; version="0.0.3.3"; sha256="1fgydm8ai0fvfqbwlkj27pa3nl242kb3xiai50lrda0ssqbrnw67"; depends=[shiny]; }; +shinyjs = derive { name="shinyjs"; version="0.0.6.2"; sha256="0z9lw680bhfzm40j1ffy6y3vfxjkz9457w62rjrw32nssv8vjqvs"; depends=[shiny]; }; shinythemes = derive { name="shinythemes"; version="1.0.1"; sha256="0wv579cxjlnd7wkfqzy2x3qk7d1abql1nhw10rx1c4c808vsylkw"; depends=[shiny]; }; shopifyr = derive { name="shopifyr"; version="0.28"; sha256="1ypqgiqimdwj9fjy9ykk42rnkipb4cvdxy5m9z9jklvk5a7cgrml"; depends=[RCurl R6 RJSONIO]; }; shotGroups = derive { name="shotGroups"; version="0.6"; sha256="0khcgzli6114yqrglmsvhr8rwkkkwdkd06b50isbc24vpv6xbfx9"; depends=[boot coin CompQuadForm energy KernSmooth mvoutlier robustbase]; }; -showtext = derive { name="showtext"; version="0.4-1"; sha256="1c2wd107g2xg8khlad5vimwj7wdxk7b7i2k1ydkkd7b47c6d9zhh"; depends=[sysfonts showtextdb]; }; +showtext = derive { name="showtext"; version="0.4-2"; sha256="18r1xwyjca9ccr2yf8r786pgji38myqp35abxsvd7wv7k3avhwd9"; depends=[sysfonts showtextdb]; }; showtextdb = derive { name="showtextdb"; version="1.0"; sha256="14iv5nyc9wszy1yhbggk7zs042kv10lwk92pn9751hfws53yq6hf"; depends=[sysfonts]; }; shp2graph = derive { name="shp2graph"; version="0-2"; sha256="09gbb7f9h3q2p56dwb2813mr36115ah70szq47jimpymzkd2x08m"; depends=[maptools igraph]; }; shrink = derive { name="shrink"; version="1.2.0"; sha256="0r207mj57kjn6wfmz4f2l4wmbz7g1pvj96gpl0s76vkdjzbh1l47"; depends=[survival MASS rms]; }; @@ -5910,16 +6024,18 @@ sievetest = derive { name="sievetest"; version="1.2.2"; sha256="0mbgkf014m6bc7qg sig = derive { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; sigclust = derive { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigloc = derive { name="sigloc"; version="0.0.4"; sha256="13v2dlgsbcsqqm8yxls62i7r3sk8m3c78jv8f9lgdihq5pjnd9zp"; depends=[nleqslv ellipse]; }; -signal = derive { name="signal"; version="0.7-4"; sha256="0sz8im7i46qy5wjpm34a2nqvrc1vipmqlw8ns3i2s1vhcvp7fjs1"; depends=[MASS]; }; +signal = derive { name="signal"; version="0.7-5"; sha256="0v6zmy25ikkrc2ravaj7k1qzxm3zdvj6g0d55lkyjv7pb3kl5m1k"; depends=[MASS]; }; signal_hsmm = derive { name="signal.hsmm"; version="1.2.1"; sha256="0nxhksvwkidmp5x27hxmwxbv747lrwa19b4vi6dx72hny8prgvpc"; depends=[biogram seqinr shiny]; }; +signmedian_test = derive { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; simFrame = derive { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[Rcpp lattice Rcpp]; }; simMSM = derive { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[survival mvna]; }; -simPH = derive { name="simPH"; version="1.3.1"; sha256="1i4sqaiiy77a4c3aq52d0ddn3abkkqgjh5sxj2v459gck5fd9rgs"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv reshape2 stringr survival quadprog]; }; +simPH = derive { name="simPH"; version="1.3.2"; sha256="0zlzlan2syl51smc3wm52yiak82v1f3pjgsba3w677a37g3badls"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv reshape2 stringr survival quadprog]; }; simPop = derive { name="simPop"; version="0.2.9"; sha256="1vi2jab57aqf1jyf87vrybz5qbhv7wdjhsm963z3cpyva2bj0i60"; depends=[lattice vcd data_table laeken MASS Rcpp e1071 nnet doParallel foreach colorspace Rcpp]; }; simSummary = derive { name="simSummary"; version="0.1.0"; sha256="1ay2aq6ajf1rf6d0ag3qghxpwj0f8b3fhpr2k0imzmpbyag1i3gj"; depends=[abind svUnit gdata]; }; simTool = derive { name="simTool"; version="1.0.3"; sha256="1x018p5mssrhz2ghs3ly9wss12503h93gl7zk0mqh1bcrzximh0k"; depends=[plyr reshape]; }; simba = derive { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; }; simboot = derive { name="simboot"; version="0.2-5"; sha256="0slznwk8i3z76sxbfd4y5rp28jr6jv4i5ynnckpr10i59ba04wlq"; depends=[boot mvtnorm]; }; +simcausal = derive { name="simcausal"; version="0.1"; sha256="0i39rkfmaqw0f9g3mw05rz7bf0vd4nqxwaixf8i8mvhnbn5gglv3"; depends=[data_table reshape2]; }; simctest = derive { name="simctest"; version="2.4.1"; sha256="0v4l3dqhr551kr1kivsndk4ynkiaarp8hp65vgng4q8jm60il98c"; depends=[]; }; simecol = derive { name="simecol"; version="0.8-6"; sha256="0h48klfwk0836byncqn9d0z8mkh6lc8qm4zivyk5af79mr5s0bn5"; depends=[deSolve]; }; simex = derive { name="simex"; version="1.5"; sha256="01706vbmfgcg13w1kq8v5rnk5xggbd1n7fv50c6bvhdyc1dly313"; depends=[]; }; @@ -5933,15 +6049,15 @@ simsalapar = derive { name="simsalapar"; version="1.0-5"; sha256="1z3dwylfrl08pq simsem = derive { name="simsem"; version="0.5-8"; sha256="1kir1c0g5xb4gzmpvx13qp071b3d5v0br3093q394wzp22d816xk"; depends=[lavaan]; }; siplab = derive { name="siplab"; version="1.1"; sha256="1b5drhla4p7n1y1cp7kqwqzw0b286kgij9j6wsks5vjgy5qfal1x"; depends=[spatstat]; }; sirad = derive { name="sirad"; version="2.0-7"; sha256="009icj1jil757vvsf88sgmdz40swrx1qvrhnx7wwj7p3dlh78pvw"; depends=[zoo ncdf RNetCDF raster]; }; -sirt = derive { name="sirt"; version="1.5-0"; sha256="0mj6j336b4kzd2fsy3nha66r88cyfnq70cgfld36p9izlxlq6l7x"; depends=[TAM CDM Rcpp mirt lavaan qgraph semPlot combinat ic_infer sfsmisc sm psych pbivnorm gtools igraph coda mvtnorm MASS Matrix Rcpp RcppArmadillo]; }; +sirt = derive { name="sirt"; version="1.7-0"; sha256="12z1gk92rll5lxycv3gvz6y5ia5pbysq5fr3y62xn3wwgm2vrpch"; depends=[TAM CDM Rcpp mirt lavaan qgraph semPlot combinat ic_infer sfsmisc sm psych pbivnorm gtools igraph coda mvtnorm MASS Matrix lavaan_survey survey Rcpp RcppArmadillo]; }; sisVIVE = derive { name="sisVIVE"; version="1.1"; sha256="1p1l07pgd88ap3bp0zwinnzda07pfg6cn92ync2pkqn5l0gmfxbs"; depends=[lars]; }; sisus = derive { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[MASS RColorBrewer coda gdata gtools moments polyapost rcdd]; }; sitar = derive { name="sitar"; version="1.0.2"; sha256="0z9r3z512s0gpkcpdbi45qdl40rp4jacpm9k0c5pjilwiga6p07z"; depends=[nlme quantreg]; }; sitools = derive { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sivipm = derive { name="sivipm"; version="1.0-0"; sha256="1r548kfsi90rzisx37nw3w9vwj3gs4ck5zhwlskbdzgigb78spfp"; depends=[seqinr]; }; -sjPlot = derive { name="sjPlot"; version="1.8"; sha256="10hbm76qrlbcl384vfp9gkhlkxpvic8iq3l0k97pb7pv8k4482mx"; depends=[car dplyr ggplot2 MASS psych scales sjmisc tidyr]; }; +sjPlot = derive { name="sjPlot"; version="1.8.1"; sha256="0na5c9fd4irnf1vhqhxgdhwpqyqfsqdxz47gx65r9qq294bhwc75"; depends=[car dplyr ggplot2 MASS psych scales sjmisc tidyr]; }; sjdbc = derive { name="sjdbc"; version="1.5.0-71"; sha256="0i9wdfadfcabayq78ilcn6x6y5csazbsgd60vssa2hdff0ncgvk1"; depends=[rJava]; }; -sjmisc = derive { name="sjmisc"; version="1.0.1"; sha256="1a8i355jzp77d8ngyyyiw12yx2ppc2drh3qxs2n4b361vxcq8p6m"; depends=[MASS]; }; +sjmisc = derive { name="sjmisc"; version="1.0.2"; sha256="1hgmm5yjgnd2n3k0gjcv58pv0wxzx5pia38ycjix4vyjgbp01kq0"; depends=[MASS]; }; skatMeta = derive { name="skatMeta"; version="1.4.3"; sha256="0bknv066ya4yl4hl4y02d9lglq2wkl9c2j1shzg3d64dg4sjvbak"; depends=[Matrix coxme survival CompQuadForm]; }; skda = derive { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; skewt = derive { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; @@ -5962,6 +6078,7 @@ smart = derive { name="smart"; version="1.0.1"; sha256="0ki3qn71zrw0nyv395qijcwa smatr = derive { name="smatr"; version="3.4-3"; sha256="0iiazln4albj7k5w67slvyn98cqg4f6k409mml0n1pvlkki0h7gy"; depends=[plyr]; }; smbinning = derive { name="smbinning"; version="0.1"; sha256="1r3l8z875k5sjnbjg0dpkv3x122hn8g601025lfdpl2ndkbz4qms"; depends=[sqldf partykit Formula gsubfn]; }; smcUtils = derive { name="smcUtils"; version="0.2.2"; sha256="0d1kmg386j0zrpp8vgxjwvpf1i25l86xrh82767xkp0n9qj8srwq"; depends=[]; }; +smcfcs = derive { name="smcfcs"; version="1.0.0"; sha256="04r8a2p8549pq8yl92ajj893w1rj03s14q6dv14vp0873zrxkxza"; depends=[VGAM MASS survival]; }; smco = derive { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; }; smcure = derive { name="smcure"; version="2.0"; sha256="1j7fxnb0sx57a0l929c3haz4f1y829ymlq0cvdh0cia4qp6ydv60"; depends=[survival]; }; smdata = derive { name="smdata"; version="1.1"; sha256="1hcr093xfkp88fn75imjkmfnp9cfsng5ndxpa8m2g0l29qhpxfvk"; depends=[]; }; @@ -5970,16 +6087,17 @@ smds = derive { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxws sme = derive { name="sme"; version="0.8"; sha256="1djrs3z699p6q2y1hfywh27csqc9cp1cfm3lxkigmmvxqjhyshz6"; depends=[lattice]; }; smfsb = derive { name="smfsb"; version="1.1"; sha256="0khd23b6k9zgxz2x6g6c6k2g32mbpli32izdq6fgk1a990kdsp6j"; depends=[]; }; smirnov = derive { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; -smnet = derive { name="smnet"; version="1.0"; sha256="185ihq44fp00qp03lp9hz821a1ddm1bd09k3j0ii715grc91nc49"; depends=[SSN spam dfoptim RSQLite igraph DBI]; }; +smnet = derive { name="smnet"; version="2.0"; sha256="0jd574cjkylcrlnlnw859f4vwadi1v955m2lb5z3w3gdpv0lbx3p"; depends=[SSN spam RSQLite igraph DBI]; }; +smoof = derive { name="smoof"; version="1.0"; sha256="10yvx5lr73kzjk7xn4jy97yzvv8qilrp7ilvk0fg5hyimbwlz13s"; depends=[ParamHelpers BBmisc checkmate ggplot2 RColorBrewer plot3D emoa]; }; smoothHR = derive { name="smoothHR"; version="1.0.1"; sha256="02kjqkgnhjwhq1vmva9nmy36a7bc6zjj6g81dw9m4zd3y9nbb005"; depends=[survival]; }; -smoothSurv = derive { name="smoothSurv"; version="1.5"; sha256="145j415jr482s860c685sr815bwx7g63pkfhra1m6r2wawqb2gl5"; depends=[survival]; }; +smoothSurv = derive { name="smoothSurv"; version="1.5-2"; sha256="07yr97nzp4mfj37v9sr37dgriq0a7kbmsj0n3lmxrzfjhinwnhij"; depends=[survival]; }; smoother = derive { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; smoothie = derive { name="smoothie"; version="1.0-1"; sha256="12p4ig8fbmlsby5jjd3d27njv8j7aiwx0m2n1nmgvjj0n330s1kj"; depends=[]; }; smoothmest = derive { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; smoothtail = derive { name="smoothtail"; version="2.0.3"; sha256="0yr3j5mq1h9pd72kyi9z6wzly9cqkscim814yi710y79l03gp0fd"; depends=[logcondens]; }; sms = derive { name="sms"; version="2.3"; sha256="0grxyp590hj2rvw1fw3yidzkl8nqqp5a14bp9xfpdph2nyas61qq"; depends=[doParallel foreach]; }; smss = derive { name="smss"; version="1.0-1"; sha256="17a0x92hxzn212yiz87n7ssyi3bdhnyawxk1kkmk46q1ss22a1pm"; depends=[]; }; -sn = derive { name="sn"; version="1.2-1"; sha256="0sqmabksvv13adf521mbzbi76dgbxc37xppjw4vwzmp4x6d8h0jf"; depends=[mnormt numDeriv]; }; +sn = derive { name="sn"; version="1.2-2"; sha256="1fsl2qjgk7lcjxszdfs7s159qwy6gyg7bsxpfg0l5rcf2mlbwf8m"; depends=[mnormt numDeriv]; }; sna = derive { name="sna"; version="2.3-2"; sha256="1dmdv1bi22gg4qdrjkdzdc51qsbb2bg4hn47b50lxnrywdj1b5jy"; depends=[]; }; snapshot = derive { name="snapshot"; version="0.1.2"; sha256="0cif1ybxxjpyp3spnh98qpyw1i5sgi1jlafcbcldbqhsdzfz4q10"; depends=[]; }; snht = derive { name="snht"; version="1.0.2"; sha256="1rs9q8fmvz3x21ymbmgmgkqr7hqf3ya3xb33zj31px799jlldpb9"; depends=[ggplot2 gridExtra mgcv zoo plyr reshape]; }; @@ -6001,7 +6119,7 @@ soil_spec = derive { name="soil.spec"; version="2.1.4"; sha256="129iqr6fdvlchq56 soilDB = derive { name="soilDB"; version="1.5-4"; sha256="1n8ybryrg88m12qb6bwiqs04dxgbs4nv8ay27d2vi0xrkqhs99k2"; depends=[aqp plyr Hmisc RCurl XML sp]; }; soilphysics = derive { name="soilphysics"; version="2.3"; sha256="1d64jaw5ra1l0za2kpigqfdf52a5zrxy9j9g2g7f5yffqsp0jwb5"; depends=[rpanel MASS]; }; soilprofile = derive { name="soilprofile"; version="1.0"; sha256="0sdfg6m2m6rb11hj017jx2lzcgk6llb01994x749s0qhzxmvx9mb"; depends=[aqp lattice munsell splancs]; }; -soiltexture = derive { name="soiltexture"; version="1.2.19"; sha256="0nw72913qb1hpifjqv0s1z5sxhgavhbalqhjczxg8b66fwqzrs7l"; depends=[sp MASS]; }; +soiltexture = derive { name="soiltexture"; version="1.3.3"; sha256="1a0j10f6mxwrslqd4fvc1nqvsh47ly1nyhc6l0qq1iz6ffqd37mx"; depends=[sp MASS]; }; soilwater = derive { name="soilwater"; version="1.0.1"; sha256="08rz1i5dsgwfvfd4sl5x9j970v82v3kny0rqg1zbdnr53vp2xc7j"; depends=[]; }; solaR = derive { name="solaR"; version="0.41"; sha256="003f8dka0jqlfshzc3d4z9frq5jb5nq6sw3sm44x7rj79w3ynpyg"; depends=[zoo lattice latticeExtra RColorBrewer]; }; solarius = derive { name="solarius"; version="0.2.3"; sha256="164va71v77b0lyhccgrb47idhi7dlgyyw1vbs2iqci77ld6x50yl"; depends=[plyr ggplot2 data_table]; }; @@ -6021,11 +6139,12 @@ sos4R = derive { name="sos4R"; version="0.2-11"; sha256="0r4lficx8wr0bsd510z4cp6 sotkanet = derive { name="sotkanet"; version="0.9.10"; sha256="0nshd6caxxayr7w39d6ildz42aarr3ff8iyfpwjd544yhblkj7jh"; depends=[ggplot2 RCurl rjson]; }; soundecology = derive { name="soundecology"; version="1.3"; sha256="1kcmsas359xcwqd0lxffr5p996jikqdag6idibq57qb6rnz3hgfz"; depends=[pracma oce ineq vegan tuneR seewave]; }; source_gist = derive { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; -sp = derive { name="sp"; version="1.1-0"; sha256="1lnc1vlxw15wk69hh7c26dc7vxydyxwi8rfpwrpn9wj4pm0hp8a5"; depends=[lattice]; }; +sp = derive { name="sp"; version="1.1-1"; sha256="1485jylvwbf99snbmp0xs13h5wlvfgwf04cbny4zgn43nipsvsik"; depends=[lattice]; }; sp23design = derive { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; spBayes = derive { name="spBayes"; version="0.3-9"; sha256="1zdyz5jqbixwj59q9f1x8f3knz0jwdfl0abj0w6cxrllkb38yg10"; depends=[coda magic abind Formula]; }; spBayesSurv = derive { name="spBayesSurv"; version="1.0.2"; sha256="0pxndjksrd22p60pvc4czxwqhrpx5ik0yr23nz7kmg6wnp36hc6w"; depends=[Rcpp survival coda Rcpp RcppArmadillo]; }; spMC = derive { name="spMC"; version="0.3.6"; sha256="0h71m55jmv80kx5ccsrpsakrh4qw5f3kx2qizwi10jlybwggqv0m"; depends=[]; }; +spTDyn = derive { name="spTDyn"; version="1.0"; sha256="0yrnbf9g1n1hrrra2vp6412wfky1bhy3b6raif9k82xvi9p9m6pz"; depends=[coda sp]; }; spTest = derive { name="spTest"; version="0.1.0"; sha256="0asfgf0dx72025q41ndzgwm2n471lwha7bcc1dfk3zwib75w3lgl"; depends=[]; }; spThin = derive { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[spam fields knitr]; }; spTimer = derive { name="spTimer"; version="2.0-0"; sha256="0ldby68p4y5cz5dj2m33jcbgd3mw9nv0py4llg8aj10bxylarmfv"; depends=[coda sp]; }; @@ -6039,6 +6158,7 @@ spacetime = derive { name="spacetime"; version="1.1-4"; sha256="1amxdjjqxibllwnb spacodiR = derive { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[picante colorspace Rcpp Rcpp]; }; spacom = derive { name="spacom"; version="1.0-4"; sha256="1jfsbgy7b0mwl4n2pgrkkghx9p8b0wipvg4c5jar6v8ydby6qg94"; depends=[spdep foreach iterators lme4 nlme Matrix]; }; spam = derive { name="spam"; version="1.0-1"; sha256="033s5ka05kg97fmc3l1li3z6x5225rwhrdxh57wwn4axrjwy1nyy"; depends=[]; }; +spanel = derive { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanr = derive { name="spanr"; version="1.0"; sha256="1x29hky347kvmk9q75884vf6msgcmfi3w4lyarq99aasi442n1ps"; depends=[plyr stringr survival]; }; sparc = derive { name="sparc"; version="0.9.0"; sha256="0jsirrkmvrfxav9sphk8a4n52fg0d1vnk3i8m804i4xl0s7lrg8s"; depends=[]; }; sparcl = derive { name="sparcl"; version="1.0.3"; sha256="1348pi8akx1k6b7cf4bhpm4jqr5v8l5k086c7s6rbi5p6qlpsrvz"; depends=[]; }; @@ -6069,9 +6189,9 @@ spatialkernel = derive { name="spatialkernel"; version="0.4-19"; sha256="0gbl6lr spatialnbda = derive { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[SocialNetworks mvtnorm]; }; spatialprobit = derive { name="spatialprobit"; version="0.9-10"; sha256="1z88nss69pixazqk3b6rpyc7mjryfznrgw9swfyfxky0bsdfj6mv"; depends=[Matrix spdep mvtnorm tmvtnorm]; }; spatialsegregation = derive { name="spatialsegregation"; version="2.40"; sha256="0kpna2198nrj93bjsdgvj85wnjfj18psdq919fjnnhbzgzdkxs7l"; depends=[spatstat]; }; -spatstat = derive { name="spatstat"; version="1.41-1"; sha256="1r2538h4arvlsn49ci84ch45wy5k9kiq4d22bd98jrh6xna3rd6x"; depends=[mgcv Matrix deldir abind tensor polyclip goftest]; }; -spatsurv = derive { name="spatsurv"; version="0.9-8"; sha256="1dsqkcmhka8yzl13jfn19ywq1bk7788amj4nrl1bz05q3vz3drpp"; depends=[survival sp iterators RandomFields fields rgl Matrix stringr]; }; -spc = derive { name="spc"; version="0.5.0"; sha256="0bh4a3dpavczckhpwqax1h5w73ai3mkf0nwq9nhlvkdrh6k6j6cy"; depends=[]; }; +spatstat = derive { name="spatstat"; version="1.42-1"; sha256="10889xg5l7vjmlv79dhdayifplzxhnykhhgjpsn54rncz0k0hd0p"; depends=[mgcv Matrix deldir abind tensor polyclip goftest]; }; +spatsurv = derive { name="spatsurv"; version="0.9-9"; sha256="1zvf8n4isaxi8n47qvgw6zqrgsnf3g6jpm19k6w6zbp9v5r8fw7r"; depends=[survival sp spatstat raster iterators RandomFields fields rgl Matrix stringr rgeos RColorBrewer geostatsp]; }; +spc = derive { name="spc"; version="0.5.1"; sha256="1299lhk8snrhm7xpq0ccmq5kmpapc13rxcyvljs4c7frj645rwz4"; depends=[]; }; spca = derive { name="spca"; version="0.6.0"; sha256="156bz3w3999vhjpsa9cs21rf2r9hv49vw1pfak0r37kbvf2d4rm6"; depends=[MASS]; }; spcadjust = derive { name="spcadjust"; version="0.1-3"; sha256="1l6m4aisk780znpjr7lnlh0z42rbc2jyblv17hafbr1siymrasc2"; depends=[]; }; spcosa = derive { name="spcosa"; version="0.3-5"; sha256="15q0f2sfhm1b13zs5a50yfvqhgcn4fyncf0h5ivin2k9g5xvq4k4"; depends=[rJava ggplot2 sp]; }; @@ -6084,8 +6204,9 @@ spe = derive { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq0 speaq = derive { name="speaq"; version="1.2.1"; sha256="0glvw1jdyc8w8b8m7l74d0rl74xfs4zmanmx4i41l7ynswhmqm01"; depends=[]; }; speccalt = derive { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; specificity = derive { name="specificity"; version="0.1.1"; sha256="1gvlyx9crkzm3yyp1ln5j9czcg83k7grm6ijabhl919gjjr1p60n"; depends=[car]; }; +spectral_methods = derive { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[Rssa raster nnet abind RNetCDF ncdf_tools foreach JBTools DistributionUtils RColorBrewer]; }; spectralGP = derive { name="spectralGP"; version="1.3.2"; sha256="0gzkwi3npb97y06gvsidaq75h8lg1cvkq8mr9hxp9n7ib6n924v9"; depends=[]; }; -speedglm = derive { name="speedglm"; version="0.2-1.0"; sha256="13gjij9pb65j9c52d5cxl9n6fjmcwbhja4wdl4619dy5rj9vsyi4"; depends=[Matrix]; }; +speedglm = derive { name="speedglm"; version="0.3"; sha256="07pq0ymg7x9c9pq79d476slca43jv4682iackd446glw2qffac1y"; depends=[Matrix MASS]; }; speff2trial = derive { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; sperich = derive { name="sperich"; version="1.5-5"; sha256="0xwzyfx3z06lapvhzdzrfr9hw2hm8d0cyfmc29p5fcplmjm24idh"; depends=[]; }; sperrorest = derive { name="sperrorest"; version="0.2-1"; sha256="17jq8r98pq3hsyiinxg30lddxwpwi696srsvm3lfxrzk11076j6v"; depends=[ROCR rpart]; }; @@ -6116,7 +6237,7 @@ sprinter = derive { name="sprinter"; version="1.1.0"; sha256="12v4l4fxijh2d46yzs sprm = derive { name="sprm"; version="1.1"; sha256="0xnbdnzgf54r93bvnyjcdcqlr0q7s7f2cvayw681zi0ig3z633j0"; depends=[ggplot2 cvTools reshape2 pcaPP]; }; sprsmdl = derive { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; }; spsmooth = derive { name="spsmooth"; version="1.1-3"; sha256="09b740586zyi8npq0bmy8qifs9rq0rzhs9c300fr6pjpc7134xn4"; depends=[mgcv]; }; -spsurvey = derive { name="spsurvey"; version="2.6"; sha256="1s48acqi502mdabhymhn0jjsghnlh2w6wnrfaa9gv0a7xjvjkydq"; depends=[sp deldir foreign MASS rgeos]; }; +spsurvey = derive { name="spsurvey"; version="3.0"; sha256="15i10a6hhk1wwnyd4lbrqaql8i4s10302bxmpr0s5cyifs084l77"; depends=[sp deldir foreign MASS rgeos]; }; spt = derive { name="spt"; version="1.13-8-8"; sha256="18s74pxfmsjaj92z2a34nq90caf61s84c616yv33a0xvfvp32qr5"; depends=[]; }; sptm = derive { name="sptm"; version="14.10-11"; sha256="1g7dqfsyy0cvv3idx16bpny9z4f638aprbc50x8kk4zfk3km7wnr"; depends=[survival survey kyotil]; }; spuRs = derive { name="spuRs"; version="2.0.0"; sha256="0lbc3nny6idijdaxrxfkfrn40bxfyp9z3yl9mwb1k6cyd10v5mfj"; depends=[MASS lattice]; }; @@ -6131,28 +6252,30 @@ ss3sim = derive { name="ss3sim"; version="0.8.2"; sha256="1gj3kf4ccd5n2jr4sm50gn ssanv = derive { name="ssanv"; version="1.0-2"; sha256="18ib0djqxjpp4xgvsffwqgxqljpwc24ysxj26phpr6p8kdl3hr2f"; depends=[]; }; ssd = derive { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; sse = derive { name="sse"; version="0.5-4"; sha256="126dc4gk0hynwfz887d3wdcs7xacmmjhpf82sbhmhvg73dc1r5jz"; depends=[lattice]; }; +ssfa = derive { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik spdep sp]; }; ssfit = derive { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; }; ssh_utils = derive { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; ssize_fdr = derive { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; -ssizeRNA = derive { name="ssizeRNA"; version="1.1.1"; sha256="19l7kmkc1cnggf0rcqxphifw5y6iknkxas0ik3kfd1swsgmvw587"; depends=[MASS ssize_fdr]; }; +ssizeRNA = derive { name="ssizeRNA"; version="1.1.2"; sha256="11dnc3wqj0i5blzc9ndpgl48xm5fibjgx9sxrzdcza0gbj8qpadm"; depends=[MASS ssize_fdr]; }; ssmrob = derive { name="ssmrob"; version="0.4"; sha256="1inndspir7571f54kalbj0h599v9k6dxdmp0n1l5r3a62vn45hd3"; depends=[sampleSelection robustbase mvtnorm MASS]; }; sspline = derive { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; }; sspse = derive { name="sspse"; version="0.5-1"; sha256="0gih9d0g4kp08c4v01p699lavb491khyj16i8vldhcb194bvs8m5"; depends=[coda]; }; sss = derive { name="sss"; version="0.0-11"; sha256="0k7p1ws0w7wg9wyxcg1zpk8q6kr32l3jl6yd9r4qmzq04dwqrdgz"; depends=[plyr XML]; }; ssvd = derive { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; -ssym = derive { name="ssym"; version="1.5.2"; sha256="0c3c4disiicavr8m2yvvi2k38gnw4akdqp0f1v6647i5zj160zkr"; depends=[GIGrvg numDeriv normalp Formula]; }; +ssym = derive { name="ssym"; version="1.5.3"; sha256="0d8d0s9k87w7mxlvkzj307wkmxghc0qzhn7crm3fvcb1phf115p8"; depends=[GIGrvg numDeriv normalp Formula survival]; }; st = derive { name="st"; version="1.2.4"; sha256="1lnrzz7kc21mrs8xrqs21fcwd92d5kzhvfiq36j02982n18f6c64"; depends=[sda fdrtool corpcor]; }; staTools = derive { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[Rcpp VGAM magicaxis Rcpp]; }; stab = derive { name="stab"; version="0.1.9"; sha256="1awf8bj3c4wvs818g4wfmw23vdhv06kn229cmhqbr7dsz933vwwf"; depends=[MASS reshape]; }; stabledist = derive { name="stabledist"; version="0.7-0"; sha256="06xd3kkyand0gzyj5phxlfjyygn5jlsq7gbwh62pc390by7ld2c7"; depends=[]; }; stabs = derive { name="stabs"; version="0.5-1"; sha256="0mlwbf8wf38mr39si31i4iz00hpsmchbhgagwgsf3x9422zpq92p"; depends=[]; }; +stackoverflow = derive { name="stackoverflow"; version="0.1.2"; sha256="1psw96iscgsx11drmcnh0yjg2jjcaa4akmywh337i6gbgam8kj61"; depends=[]; }; stacomirtools = derive { name="stacomirtools"; version="0.3"; sha256="1lbbnvmilf3j3hyhvpkyjd4b4sf3zwygilb8x0kjn2jfhkxnx4c1"; depends=[RODBC xtable]; }; -stagePop = derive { name="stagePop"; version="1.0-1"; sha256="0yb1dbgmns6km0p35wny6f4v7xl4225v8lww0wmzrvdw7l2m8m8d"; depends=[deSolve PBSddesolve]; }; +stagePop = derive { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stam = derive { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; }; stargazer = derive { name="stargazer"; version="5.1"; sha256="0ar0qm289ncsns2pqkabpyjc90ws0il1q7fp5206wqghgsvqjcc0"; depends=[]; }; startupmsg = derive { name="startupmsg"; version="0.9"; sha256="1l75w4v1cf4kkb05akhgzk5n77zsj6h20ds8y0aa6kd2208zxd9f"; depends=[]; }; stashR = derive { name="stashR"; version="0.3-5"; sha256="1lnpi1vb043aj4b9vmmy56anj4344709986b27hqaqk5ajzq9c3w"; depends=[filehash digest]; }; -statar = derive { name="statar"; version="0.1.3"; sha256="1lkbp6ki4w0gm3l683xar44vrkw69883qvr73mc179bdh31znqli"; depends=[data_table dplyr ggplot2 Hmisc lazyeval lfe lubridate matrixStats stargazer stringr tidyr]; }; +statar = derive { name="statar"; version="0.3.0"; sha256="0ynvabdyp5vy90gz7c9ywbdyg8dp4vmmz2zjd7z8b5jjk0f8xsf1"; depends=[data_table dplyr ggplot2 lazyeval matrixStats proto stargazer stringr tidyr]; }; statcheck = derive { name="statcheck"; version="1.0.1"; sha256="01b40bjagkj6hfyq9ppdlaafwgykv8p9s8sm0abd3if82ivdpixj"; depends=[plyr]; }; statebins = derive { name="statebins"; version="1.0"; sha256="1mqky4nb31xjhn922csvv8ps2fwgcgazxs56rcn3ka32c59a4mmg"; depends=[ggplot2 scales gridExtra RColorBrewer]; }; statfi = derive { name="statfi"; version="0.9.8"; sha256="0kg9bj2mmd95ysg604rcg4szqx3whbqm14fwivnd110jgfy20gk2"; depends=[pxR]; }; @@ -6174,7 +6297,7 @@ stm = derive { name="stm"; version="1.0.8"; sha256="0dnzkqh3hnnjm0wmzpn48bwylmh4 stmCorrViz = derive { name="stmCorrViz"; version="1.1"; sha256="03bjxil8v4ixgbabg2gq78xgqy4s3wh89hq1z5598gxysz12z3ji"; depends=[jsonlite stm]; }; stocc = derive { name="stocc"; version="1.23"; sha256="183rv1l1hpa691f3xf455bv8dzdw6ac79zg3v99zksli6i7c8jdz"; depends=[truncnorm coda Matrix fields]; }; stochprofML = derive { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; }; -stochvol = derive { name="stochvol"; version="1.0.0"; sha256="1c083gmfq9ldd41235shcb5i3ggd92fxvimhaavljnr1wsls5f2b"; depends=[coda Rcpp Rcpp]; }; +stochvol = derive { name="stochvol"; version="1.1.1"; sha256="1cfav3i7w5i3rayajdybjmwvmqvqj58zk8sk0icw52r5l4ki2d6s"; depends=[coda Rcpp Rcpp]; }; stockPortfolio = derive { name="stockPortfolio"; version="1.2"; sha256="0k5ss6lf9yhcvc4hwqmcfpdn6qkbq5kaw0arldkl46391kac3bd1"; depends=[]; }; stocks = derive { name="stocks"; version="1.1.1"; sha256="1qwd16bw40w2ns7b0n9wm8l344r4vyk27rmg0vr5512zsrcjkcfb"; depends=[rbenchmark Rcpp Rcpp]; }; stoichcalc = derive { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; @@ -6186,18 +6309,18 @@ strataG = derive { name="strataG"; version="0.9.4"; sha256="0lxp6s0gfqxyla7mx19f stratification = derive { name="stratification"; version="2.2-5"; sha256="0cgr49gvh12s6rr43878jxjkir7b7absqgbfsvj1bjlf2r3gyqy9"; depends=[]; }; stratigraph = derive { name="stratigraph"; version="0.66"; sha256="1idn5rwar9pxp1vsra68wrlhagmc92y5rs7vn4h63p35p357qdwz"; depends=[]; }; straweib = derive { name="straweib"; version="1.0"; sha256="0bh2f4n4i7fiki52sa57v96757qw1gn1lcn7vgxmc5hk5rzp2mi8"; depends=[]; }; -stream = derive { name="stream"; version="1.1-1"; sha256="0l9sywmajydmd0nkdlbhc4k5lf7qjrndjj6clw5j2mgw97cqaag5"; depends=[hash proxy animation clue cluster clusterGeneration fpc MASS mlbench]; }; -streamMOA = derive { name="streamMOA"; version="1.0-0"; sha256="176llkj9q0p5ym09iagaw5cag6ln94bw04pjl120jnxn6p7i22s2"; depends=[stream rJava]; }; +stream = derive { name="stream"; version="1.1-4"; sha256="1pz9ck6rxxwnzrhixs015k3sy2gl8hwxyxwr56ykpkrcn6kgzm3f"; depends=[proxy animation clue cluster clusterGeneration fpc MASS mlbench Rcpp Rcpp]; }; +streamMOA = derive { name="streamMOA"; version="1.1-0"; sha256="0h45saz5jf9jfsajy987ljpfpm2cxigyqkgmybd0m3aqyrqlljbc"; depends=[stream rJava]; }; streamR = derive { name="streamR"; version="0.2.1"; sha256="1ml33mj7zqlzfyyam23xk5d25jkm3qr7rfj2kc5j5vgsih6kr0gl"; depends=[RCurl rjson]; }; stremo = derive { name="stremo"; version="0.2"; sha256="13b9xnd8ykxrm8gnakh0ixbsb7yppqv3isga8dsz473wzy82y6h1"; depends=[lavaan numDeriv MASS]; }; stressr = derive { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[xts XML lattice latticeExtra]; }; stringdist = derive { name="stringdist"; version="0.9.0"; sha256="0304a3qyssq2l2c7da5a90fca32n3ph5jixqnqvb3jwzdb8dxm2f"; depends=[]; }; stringi = derive { name="stringi"; version="0.4-1"; sha256="01ig59cmvrk9vfh4l84i2h4vgddfspyrxwh3am33apv8r8vr4bnj"; depends=[]; }; stringr = derive { name="stringr"; version="1.0.0"; sha256="0jnz6r9yqyf7dschr2fnn1slg4wn6b4ik5q00j4zrh43bfw7s9pq"; depends=[stringi magrittr]; }; -strucchange = derive { name="strucchange"; version="1.5-0"; sha256="17ikp36ahnsx1q3avqkz5r2n2yagzq7j6m515vdm8rxgv0538is3"; depends=[zoo sandwich]; }; +strucchange = derive { name="strucchange"; version="1.5-1"; sha256="0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl"; depends=[zoo sandwich]; }; structSSI = derive { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[igraph rjson ggplot2 reshape2]; }; -strum = derive { name="strum"; version="0.6"; sha256="1jd8h8fnjv4a58shl0j9fdlds7xns1j18b9qaqhrfa4hrdrw75s9"; depends=[pedigree Matrix MASS Rcpp Rcpp RcppArmadillo]; }; -strvalidator = derive { name="strvalidator"; version="1.4.0"; sha256="1zgfy5w4qwcm3jdqigahxi7xn8328jr568ssbj99ibzdj0m0hmfw"; depends=[gridExtra ggplot2 gWidgets gtable plyr scales gWidgetsRGtk2 RGtk2 data_table]; }; +strum = derive { name="strum"; version="0.6.1"; sha256="128xrprdmncnn2a7z6g2qzkps323qq33g3fxh1q23ys11p37dnjw"; depends=[pedigree Matrix MASS Rcpp Rcpp RcppArmadillo]; }; +strvalidator = derive { name="strvalidator"; version="1.5.0"; sha256="0b71drc80hqmqi4kspy0700wss4pm88x2gp83jsw1jrfrrrfw9jk"; depends=[gridExtra ggplot2 gWidgets gtable plyr scales gWidgetsRGtk2 RGtk2 data_table]; }; stsm = derive { name="stsm"; version="1.7"; sha256="080xakf7rf53vzv64g338hz87sk4cqfwd6ly4f122sxvn4xypq3n"; depends=[KFKSDS]; }; stsm_class = derive { name="stsm.class"; version="1.3"; sha256="19jrja5ff31gh5k2zqhqsyd7w2ivr4s6bkliash6x8fmd22h5zs8"; depends=[]; }; stylo = derive { name="stylo"; version="0.5.9"; sha256="061nfjh932qjlzvnarpwvzar0qv7ij8l6m3iax1jilygzhfqfyin"; depends=[tcltk2 ape pamr e1071 class lattice tsne]; }; @@ -6212,6 +6335,7 @@ sudoku = derive { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin sudokuAlt = derive { name="sudokuAlt"; version="0.1-4"; sha256="14jqwsp692dq0bfnk2i70qc42inb6jbissvp88c5r2cgzc1ry072"; depends=[]; }; summarytools = derive { name="summarytools"; version="0.3"; sha256="1hhkhpyaj8sc62vap5s7ds0kmk1jiy6gdvsz65ynqy2qfz58c3ms"; depends=[htmltools pander xtable rapportools rstudioapi]; }; supclust = derive { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[rpart class]; }; +supcluster = derive { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[mvtnorm gtools]; }; superMDS = derive { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; }; superbiclust = derive { name="superbiclust"; version="1.1"; sha256="1gzjbzbl8y1nzdfhyd6dlrwjq8mwj43a26qav84s1bdzwx6dra48"; depends=[biclust Matrix]; }; superdiag = derive { name="superdiag"; version="1.1"; sha256="0pa3mv74riabpm7j4587zww2364fszzlw48ijj1apcgz8y6pyqbw"; depends=[coda boa]; }; @@ -6230,10 +6354,11 @@ survMisc = derive { name="survMisc"; version="0.4.6"; sha256="1d16kkzg0clwvv5rgv survPresmooth = derive { name="survPresmooth"; version="1.1-8"; sha256="1qva7yx4vv99mgh3wqxdnbasa1gy0ixxyxpqrfbn6827whjzf91m"; depends=[]; }; survRM2 = derive { name="survRM2"; version="1.0-1"; sha256="1qcjdx4a9b9dg8jkzak6rq4d4byf9377h43f1m3icdgf79vghlhr"; depends=[survival]; }; survSNP = derive { name="survSNP"; version="0.23.2"; sha256="0vpk5qdvsagv5pnap7ja7smqvibvfp5v7smhikbbwl0h6l83jjw4"; depends=[survival Rcpp lattice foreach xtable Rcpp]; }; -surveillance = derive { name="surveillance"; version="1.8-3"; sha256="10d170l0ah92awpa9cafxshpvmj3d206fqn5sm7bd73q87mvbgdp"; depends=[sp xtable polyCub Rcpp MASS Matrix spatstat Rcpp]; }; +surveillance = derive { name="surveillance"; version="1.9-0"; sha256="1v087x0y8i2b4pbikdaj3xdb0qj1lnl8yjrzcp3l0ffcbfb8a8j2"; depends=[sp xtable polyCub Rcpp MASS Matrix spatstat Rcpp]; }; survexp_fr = derive { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; survey = derive { name="survey"; version="3.30-3"; sha256="0vcyph1vpnl4xaqd85ffh1gm0dqhvgr3343q0mlycmyq485x0idy"; depends=[]; }; surveydata = derive { name="surveydata"; version="0.1-14"; sha256="1zcp3wb7yhsa59cl4bdw7p08vpviypvfa9hggwc60w7ashpky73i"; depends=[stringr plyr]; }; +surveyeditor = derive { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; }; survival = derive { name="survival"; version="2.38-1"; sha256="0kq0a6h1bmphp4vi1f3wzs5pddp3zw9vfi7vk6x27zglnwjhkfgm"; depends=[]; }; survivalMPL = derive { name="survivalMPL"; version="0.1.1"; sha256="0c4hr2q50snd5qm2drg4qzfkcz4klxr4jba6xpc8n2i8wn573cvc"; depends=[survival]; }; survivalROC = derive { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; @@ -6259,10 +6384,12 @@ svgViewR = derive { name="svgViewR"; version="1.0.0"; sha256="0js3mc5lxzfwbnc30m svmpath = derive { name="svmpath"; version="0.953"; sha256="0hqga4cwy1az8cckh3nkknbq1ag67f4m5xdg271f2jxvnmhdv6wv"; depends=[]; }; svyPVpack = derive { name="svyPVpack"; version="0.1-1"; sha256="15k5ziy2ng853jxl66wjr27lzc90l6i5qr08q8xgcs359vn02pmp"; depends=[survey]; }; swamp = derive { name="swamp"; version="1.2.3"; sha256="1xpnq5yrmmsx3d48x411p7nx6zmwmfc9hz6m3v9avvpjkbc3glkg"; depends=[amap gplots MASS]; }; -sweidnumbr = derive { name="sweidnumbr"; version="0.2"; sha256="0zsijh9jf0pnil5n69ix408j3plbrnj0235whh9rch486ibyk779"; depends=[lubridate]; }; +sweidnumbr = derive { name="sweidnumbr"; version="0.6.0"; sha256="1qdak16jnm436m7nlngarimlhx9sc6wwq9pfrcijq8240mh7xwa2"; depends=[lubridate stringr]; }; swfscMisc = derive { name="swfscMisc"; version="1.0.3"; sha256="0ciwvxpafpc6an58r1ffkab8kj4np6l2kbpkijnqnfbf6cya0aim"; depends=[mapdata maps]; }; swirl = derive { name="swirl"; version="2.2.21"; sha256="0lpin7frm1a6y9lz0nyykhvydr1qbx85iqy24sm52r1vxycv2r8h"; depends=[stringr testthat httr yaml RCurl digest]; }; switchnpreg = derive { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[MASS fda expm HiddenMarkov]; }; +switchr = derive { name="switchr"; version="0.9.4"; sha256="16a8659x2r9adi3r0cqhsw8qg3jk6pkvrzgx8a50qyk4v50f2jsj"; depends=[]; }; +switchrGist = derive { name="switchrGist"; version="0.2.1"; sha256="0n8fzzsxm0m4yic133q07vki803zywhijadymrgyq7qlx3d1m97d"; depends=[switchr gistr httpuv RJSONIO]; }; sybil = derive { name="sybil"; version="1.2.6"; sha256="1d7q0dvpqxay86dy4zbllv78dsh0amr8n7wl0vkrb8jbakq4afip"; depends=[Matrix lattice]; }; sybilDynFBA = derive { name="sybilDynFBA"; version="0.0.2"; sha256="1sqk6dwwfrwvgkwk6mra0i1dszhhvcwm58ax6m89sxk8n0nbmr4b"; depends=[sybil]; }; sybilEFBA = derive { name="sybilEFBA"; version="1.0.2"; sha256="07c32xwql7sr217j8ixqd2pj43hhyr99vjdh7c106lsmqd1pifa4"; depends=[sybil Matrix]; }; @@ -6273,14 +6400,14 @@ symbolicDA = derive { name="symbolicDA"; version="0.4-2"; sha256="1vn7r7b7yyn2kp symbols = derive { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; symmoments = derive { name="symmoments"; version="1.2"; sha256="074k0285c0yri39zags420kjls6kjlvlhymg3r7y24h42zdy82d4"; depends=[mvtnorm cubature combinat multipol]; }; synRNASeqNet = derive { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[parmigene GenKern igraph KernSmooth]; }; -synbreed = derive { name="synbreed"; version="0.10-5"; sha256="0qhcxmcxa0ixn6ql2dr7pq10g7hmv55rcn279wz4cg5mbgqkhvmm"; depends=[doBy BLR regress abind lattice igraph MASS LDheatmap qtl synbreedData]; }; +synbreed = derive { name="synbreed"; version="0.11-8"; sha256="1d58rlys0557xs1wwd9mrvsrnx8fkcs4igxwf70rw9zy6nl9zg9k"; depends=[doBy BLR regress abind igraph lattice MASS LDheatmap qtl]; }; synbreedData = derive { name="synbreedData"; version="1.5"; sha256="16wv9r7p0n8726qv0jlizmkvnrqwjj1q4xaxvfmj9611rm47vckx"; depends=[]; }; synchronicity = derive { name="synchronicity"; version="1.1.4"; sha256="0hcxwgf1irswwabgl0b6vb9q09nhxc1ljsm195lc8ql49sfj9mfz"; depends=[bigmemory_sri BH]; }; synchrony = derive { name="synchrony"; version="0.2.3"; sha256="0fi9a3j8dfslf1nqx8d53fi635y3aq8isxw0dbjbpgk7rc71nzby"; depends=[]; }; synlik = derive { name="synlik"; version="0.1.1"; sha256="0g4n78amydihsq4jg2i9barjm9g40zczasb31fj10yn6wir1dhv7"; depends=[Rcpp Matrix Rcpp RcppArmadillo]; }; synthpop = derive { name="synthpop"; version="1.1-0"; sha256="1j9d0jpmr8dva2c7gd6z1q0a3qdxkvmm83xlv08dxkbvsfbzvmmr"; depends=[lattice MASS nnet ggplot2 coefplot rpart party foreign plyr proto]; }; sysfonts = derive { name="sysfonts"; version="0.5"; sha256="1vppj3jnag88351f8xfk9ds8gbbij3m55iq5rxbnrzy89c04zpzp"; depends=[]; }; -systemfit = derive { name="systemfit"; version="1.1-14"; sha256="0f33v96awyhxw3i6zr6whdz91hbfi7vwnfs0bz7xsrjcinqhm6h5"; depends=[Matrix car lmtest sandwich]; }; +systemfit = derive { name="systemfit"; version="1.1-16"; sha256="0b34cpwhmsmq7dcr3gymdvanj3q493aczgz3af7b14bsp3bbwpw6"; depends=[Matrix car lmtest sandwich MASS]; }; systemicrisk = derive { name="systemicrisk"; version="0.2"; sha256="06061hca2x9hj0caann69j6x2jgy8bq40nxs27iqb3zfqp2cz44f"; depends=[Rcpp lpSolve Rcpp]; }; syuzhet = derive { name="syuzhet"; version="0.2.0"; sha256="1l83wjiv1xsxw4wrcgcj3ryisi7zn4sbdl0sail0rhw0g9y9cz76"; depends=[openNLP NLP]; }; taRifx = derive { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[reshape2 plyr]; }; @@ -6300,13 +6427,13 @@ tawny_types = derive { name="tawny.types"; version="1.1.3"; sha256="1v0k6nn45rdc taxize = derive { name="taxize"; version="0.5.2"; sha256="1141ypz76nda9ij0fr63kgjagj9al63gnqwxa7ld7v9xzig8zgyp"; depends=[XML RCurl stringr plyr httr jsonlite foreach ape Taxonstand reshape2 data_table vegan bold]; }; tbart = derive { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp Rcpp]; }; tbdiag = derive { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; -tcR = derive { name="tcR"; version="1.3"; sha256="09jvmnyq9j0l8ng73jr2ldb70fbqryd6jzjsxdyhdxvj2w83qcxa"; depends=[ggplot2 dplyr gridExtra reshape2 igraph Rcpp data_table gtable roxygen2 stringdist Rcpp]; }; +tcR = derive { name="tcR"; version="2.0"; sha256="05y3nbqdaxry7jwph6z2v8d2304xh791l0vviywyghrw7b2hqw9q"; depends=[ggplot2 dplyr gridExtra reshape2 igraph Rcpp data_table gtable roxygen2 stringdist Rcpp]; }; tcltk2 = derive { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive { name="tclust"; version="1.2-3"; sha256="0a1b7yp4l9wf6ic5czizyl2cnxrc1virj0icr8i6m1vv23jd8jfp"; depends=[mvtnorm sn mclust cluster]; }; tdm = derive { name="tdm"; version="3.0.3"; sha256="01xy090h9idw05jssfgdarbqp5d1vsiir5x7fr1ylaz0k8ai23d4"; depends=[rjags coda png deSolve]; }; tdr = derive { name="tdr"; version="0.11"; sha256="1ga1lczqj5pka2yz7igxfm83xmkx7lla8pz6ryij0ybn284agszs"; depends=[lattice ggplot2 RColorBrewer]; }; tdthap = derive { name="tdthap"; version="1.1-7"; sha256="0lqcw4bzjd995pwn2yrmzay82gnkxnmxxsqplpbn5gg8p6sf5qqk"; depends=[]; }; -teigen = derive { name="teigen"; version="2.0.8"; sha256="0gh5p2rwv1krrbq92wpgl1ya74vrdxhsagd7r7wvyxvxdv3j94v5"; depends=[]; }; +teigen = derive { name="teigen"; version="2.0.81"; sha256="1bssfn487dg1nc7fv73ksciiifnk1mvaqvp8a3gjmrb7bzfyzby7"; depends=[]; }; tempdisagg = derive { name="tempdisagg"; version="0.24.0"; sha256="02ld14mppyyqvgz537sypr3mqc758cchfcmpj46b7wswwa2y7fyz"; depends=[]; }; tensor = derive { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; }; tensorA = derive { name="tensorA"; version="0.36"; sha256="1xpczn94a6vfkfibfvr71a7wccksg16pc22h0inpafna4qpygcwp"; depends=[]; }; @@ -6315,12 +6442,12 @@ termstrc = derive { name="termstrc"; version="1.3.7"; sha256="12bycwhjrhkadafcck ternvis = derive { name="ternvis"; version="1.1"; sha256="16q1a1ns7q0d46js2m1hr6zm8msg3ncgp8w7yrwch11xq0759sb4"; depends=[quadprog maps maptools mapdata dichromat]; }; tester = derive { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testit = derive { name="testit"; version="0.4"; sha256="1805i82kb2g08r0cqdk6dhfhwqjjdigdm1rqf88sp7435wksyv8i"; depends=[]; }; -testthat = derive { name="testthat"; version="0.9.1"; sha256="0hbkyfx54fz4lwyz3azfxb6xkdcmm6kjdv6ma47gv947m90ysnfk"; depends=[digest]; }; +testthat = derive { name="testthat"; version="0.10.0"; sha256="0b3akwcx5mv9dmi8vssbk91hr3yrrdxd2fm6zhr31fnyz8kjx4pw"; depends=[digest crayon]; }; testthatsomemore = derive { name="testthatsomemore"; version="0.1"; sha256="0j9sszm4l0mn7nqz47li6fq5ycb3yawc2yrad9ngb75cvp47ikkk"; depends=[testthat]; }; texmex = derive { name="texmex"; version="2.1"; sha256="17x4xw2h4g9a10zk4mvi3jz3gf4rf81b29hg2g3gq6a6nrxsj8sy"; depends=[mvtnorm]; }; texmexseq = derive { name="texmexseq"; version="0.1"; sha256="18lpihiwpjkjkc1n7ka6rzasrwv8npn4939s1gl8g1jb27vnhzb5"; depends=[]; }; texreg = derive { name="texreg"; version="1.35"; sha256="0c1w6kzczzflcmvr544v3gdasvyjxcwqgdm2w2i9wp7kd1va37fr"; depends=[]; }; -textcat = derive { name="textcat"; version="1.0-2"; sha256="0sjhahmqva9pwp75zwxxf8g1cw38awid3w6rx9xfx73cpj2blcz3"; depends=[tau slam]; }; +textcat = derive { name="textcat"; version="1.0-3"; sha256="0j3sp94bz57l70aqm11033nfshxdz3l9m4sq1gsfzkvxgnlpqrm5"; depends=[tau slam]; }; textir = derive { name="textir"; version="2.0-3"; sha256="039xl2h0igrp3fzr1qiyb0zr6j4bbajhj36apylqvwsczzaywhwb"; depends=[distrom gamlr Matrix]; }; textometry = derive { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; textreg = derive { name="textreg"; version="0.1.2"; sha256="0qya0czbi78a29jp9pd3lbqh574d9k0i340hrgc6jmdhwzhimhk7"; depends=[tm NLP Rcpp Rcpp]; }; @@ -6328,11 +6455,13 @@ tfer = derive { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm2 tfplot = derive { name="tfplot"; version="2015.4-1"; sha256="1qrw8x7pz7xcmpym3j1d095bhvy2s7znxplml1qyw5minc67n1mh"; depends=[tframe]; }; tframe = derive { name="tframe"; version="2015.1-1"; sha256="10igwmrfslyz3z3cbyldik8fcxq43pwh60yggka6mkl0nzkxagbd"; depends=[]; }; tframePlus = derive { name="tframePlus"; version="2015.1-2"; sha256="043ay79x520lbh4jm2nb3331pwd7dvwfw20k1kc9cxbplxiy8pnb"; depends=[tframe timeSeries]; }; +tgcd = derive { name="tgcd"; version="1.4"; sha256="108i7kkfkpgavs8d2c6aih9winfqhin777jn5zfxzkjd6clj857i"; depends=[]; }; tgp = derive { name="tgp"; version="2.4-11"; sha256="0hdi05bz9qn4zmljfnll5hk9j8z9qaqmya77pdcgr6vc31ckixw5"; depends=[maptree]; }; tgram = derive { name="tgram"; version="0.2-2"; sha256="091g6j5ry1gmjff1kprk5vi2lirl8zbynqxkkywaqpifz302p39q"; depends=[zoo]; }; thermocouple = derive { name="thermocouple"; version="1.0.0"; sha256="1pawk7aq27vc708xwz997pmxxhipw8449793zv6fw5aj47wcw1l5"; depends=[]; }; thgenetics = derive { name="thgenetics"; version="0.3-4"; sha256="1316nx0s52y12j9499mvi050p3qvp6b8i01v82na01vidl54b9c2"; depends=[]; }; threeboost = derive { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; }; +threejs = derive { name="threejs"; version="0.2.1"; sha256="01zfv5lm11i2nkb876f3fg8vsff2wk271jqs6xw1njjdhbnnihs1"; depends=[htmlwidgets base64enc]; }; threg = derive { name="threg"; version="1.0.2"; sha256="0wb9waj0j83zrj763d3fdnp3lp52gfdyzv23yrvxvd6zmk5clgi2"; depends=[survival Formula]; }; thsls = derive { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; tibbrConnector = derive { name="tibbrConnector"; version="1.5.0-71"; sha256="0d8gy126hzzardcwr9ydagdb0dy9bdw30l8s2wwi7zaxx2lpii6q"; depends=[RCurl rjson]; }; @@ -6341,7 +6470,7 @@ tidyjson = derive { name="tidyjson"; version="0.2.1"; sha256="178lc4ii4vjzvrkxfd tidyr = derive { name="tidyr"; version="0.2.0"; sha256="169i6xnr4bs5vqkv6dilj5j8v95giz0b7byhi06qk414gdlj2r8n"; depends=[reshape2 dplyr stringi lazyeval]; }; tiff = derive { name="tiff"; version="0.1-5"; sha256="0asf2bws3x3yd3g3ixvk0f86b0mdf882pl8xrqlxrkbgjalyc54m"; depends=[]; }; tiger = derive { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin qualV klaR som lattice]; }; -tigerstats = derive { name="tigerstats"; version="0.2"; sha256="1wj4z1jj7jg3885nvfh4l812cyybjcm5r66w3l41s4c0civl4z5b"; depends=[mosaic mosaicData abd MASS ggplot2 lattice]; }; +tigerstats = derive { name="tigerstats"; version="0.2-6"; sha256="0niibqhqpjxgq3m7xp0icf98k531ncmm853scvqp5icv2yz5ivav"; depends=[abd mosaic mosaicData ggplot2 lattice MASS]; }; tightClust = derive { name="tightClust"; version="1.0"; sha256="0psyzk6d33qkql8v6hzkp8mfwb678r95vfycz2gh6fky7m5k3yyz"; depends=[]; }; tikzDevice = derive { name="tikzDevice"; version="0.8.1"; sha256="0262szfzv4yrfal19giinrphra1kfcm2arfckql4rf2zsq13rw35"; depends=[filehash]; }; tileHMM = derive { name="tileHMM"; version="1.0-6"; sha256="18vqj7fdh4knnjk9s7yk2bgn3qwqz92fmm5fdny21gi0wl4qgdsd"; depends=[]; }; @@ -6352,7 +6481,7 @@ timeSeries = derive { name="timeSeries"; version="3012.99"; sha256="06lz9xljzadf timeit = derive { name="timeit"; version="0.2.1"; sha256="0fsa67jyk4yizyd079265jg6fvjsifkb60y3fkkxsqm7ffqi6568"; depends=[microbenchmark]; }; timeline = derive { name="timeline"; version="0.9"; sha256="0zkanz3ac6cgsfl80sydgwnjrj9rm7pcfph7wzl3xkh4k0inyjq3"; depends=[ggplot2]; }; timeordered = derive { name="timeordered"; version="0.9.8"; sha256="1j0x2v22ybyl3l9r3aaz5a3bxh0zq81rbga9gh63zads2xy5axmf"; depends=[igraph plyr]; }; -timereg = derive { name="timereg"; version="1.8.7"; sha256="1xarqsdgl1zcc8ilg23g3p2xl3zbsfiak7lagvs5sbsq84b0wpr7"; depends=[survival lava numDeriv]; }; +timereg = derive { name="timereg"; version="1.8.9"; sha256="12l8sz10ic8d34jd7ik8szg2d51pr949nsss20c5l5g3kfnvqkkh"; depends=[survival lava numDeriv]; }; timesboot = derive { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[RPostgreSQL RJSONIO xts zoo reshape2 shiny DBI]; }; timetools = derive { name="timetools"; version="1.6.5"; sha256="1ni1dqzkdrzmvr0sbnfdh7kcsd5sgfggfl6w7nqviidcff5dbc9g"; depends=[]; }; @@ -6360,7 +6489,7 @@ timetree = derive { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkffl timma = derive { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[Rcpp QCA reshape2 Rcpp RcppArmadillo]; }; timsac = derive { name="timsac"; version="1.3.3"; sha256="0jg9mjzzfl94z4dqb2kz0aiccpclnbyf9p08x3a3cw1y6wqmzrmy"; depends=[]; }; tipom = derive { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; -tis = derive { name="tis"; version="1.27"; sha256="1kgzc032qa005hzcimhbbhcs5kcvm88pfb48ac84k205f6xhdsir"; depends=[]; }; +tis = derive { name="tis"; version="1.30"; sha256="0bqvnaxqqq4962wfw4s9rf0qil613mplqcjwjlq1s9yfxl78gzzw"; depends=[]; }; titan = derive { name="titan"; version="1.0-16"; sha256="0x30a877vj99z3fh3cw9762j5ci56964j2466xfbwcywhn9njz5r"; depends=[MASS boot lattice]; }; tkrgl = derive { name="tkrgl"; version="0.7"; sha256="1kpq5p6izqrn1zr53firis3rmifq9lf6326lf3z7l1p82nf2yps5"; depends=[rgl]; }; tkrplot = derive { name="tkrplot"; version="0.0-23"; sha256="1cnyszn3rmr1kwvi5a178dr3074skdijfixf5ln8av5wwcy35947"; depends=[]; }; @@ -6376,10 +6505,10 @@ tm_plugin_factiva = derive { name="tm.plugin.factiva"; version="1.5"; sha256="06 tm_plugin_lexisnexis = derive { name="tm.plugin.lexisnexis"; version="1.2"; sha256="0cjw705czzzhd8ybfxkrv0f9kvmv9pcswisc7n9hkx8lxi942h19"; depends=[NLP tm XML ISOcodes]; }; tm_plugin_mail = derive { name="tm.plugin.mail"; version="0.1"; sha256="0ca2w2p5zv3qr4zi0cj3lfz36g6xkgkbck8pdxq5k65kqi5ndzyp"; depends=[NLP tm]; }; tm_plugin_webmining = derive { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[NLP tm boilerpipeR RCurl XML RJSONIO]; }; -tmap = derive { name="tmap"; version="0.7"; sha256="0lnlnnllj2bypw2cf8pgpv40w5zy4876kmjgav07ls8j11lklgwz"; depends=[rgeos gridBase sp rgdal classInt RColorBrewer igraph fields vegan]; }; +tmap = derive { name="tmap"; version="1.0"; sha256="1807zh2yjgcpjrl1g83ahby7857l7hd5k9shrb1v6vkv6x5rrrkm"; depends=[sp raster gridBase rgdal rgeos classInt RColorBrewer]; }; tmg = derive { name="tmg"; version="0.3"; sha256="0yqavibinzsdh85izzsx8b3bb9l36vzkp5a3bdwdbh410s62j68a"; depends=[Rcpp Rcpp RcppEigen]; }; tmle = derive { name="tmle"; version="1.2.0-4"; sha256="11hjp2vak1zv73326yzzv99wg8a2xyvfgvbyvx3jfxkgk33mybbm"; depends=[SuperLearner]; }; -tmle_npvi = derive { name="tmle.npvi"; version="0.9.3"; sha256="0njrjwjjn853iahccg37dns7pm14qr05xbkqnd1rhzg4lcl34fyb"; depends=[R_utils R_methodsS3 R_oo MASS Matrix sgeostat geometry]; }; +tmle_npvi = derive { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[R_utils R_methodsS3 R_oo MASS Matrix geometry]; }; tmvtnorm = derive { name="tmvtnorm"; version="1.4-9"; sha256="1dacdhqv6bb29a81bmxp8hxy4hragpg8mb5kql4cp59q08zmizyi"; depends=[mvtnorm Matrix gmm]; }; tnet = derive { name="tnet"; version="3.0.11"; sha256="00hifb145w0a9f5qi3gx16lm1qg621jp523vswb8h86jqmxcczbc"; depends=[igraph survival]; }; toOrdinal = derive { name="toOrdinal"; version="0.0-1"; sha256="1rr6liw0krzdarc9gd406mf242n3hl38bn52xphr1g0riq5y2m4q"; depends=[]; }; @@ -6398,7 +6527,7 @@ track = derive { name="track"; version="1.1.8"; sha256="0scrww0ba1lrv39fh416wcbz tractor_base = derive { name="tractor.base"; version="2.5.0"; sha256="17s4iyp67w7m8gslm87p3ic5r9iq7x1ifpxqrmnin3y5a3d04f5v"; depends=[reportr]; }; traitr = derive { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest proto gWidgets]; }; traj = derive { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster psych pastecs NbClust GPArotation]; }; -trajectories = derive { name="trajectories"; version="0.1-2"; sha256="1d27mb5xy29j2mgb0wh5x61q1z41vjmpidzqswqmw8fbq9g64826"; depends=[lattice sp spacetime rgdal rgeos]; }; +trajectories = derive { name="trajectories"; version="0.1-3"; sha256="1lk2mxfsf8x8idhb4dcj9lqvkjwm2yarvjid42xr2a9wwylvz9vq"; depends=[lattice sp spacetime]; }; translate = derive { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[RCurl RJSONIO functional lisp]; }; translateR = derive { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[RJSONIO RCurl textcat httr]; }; transport = derive { name="transport"; version="0.6-3"; sha256="1sldlccsprzan1liyslzp9wzz3d36khyr6zri773npvnss9pa67w"; depends=[]; }; @@ -6419,7 +6548,7 @@ trifield = derive { name="trifield"; version="1.1"; sha256="0xk48fkd5xa3mfn3pwdy trimTrees = derive { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[randomForest mlbench]; }; trimcluster = derive { name="trimcluster"; version="0.1-2"; sha256="0lsgbg93hm0w1rdb813ry0ks2l0jfpyqzqkf3h3bj6fch0avcbv2"; depends=[]; }; trioGxE = derive { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[msm mgcv gtools]; }; -trip = derive { name="trip"; version="1.1-19"; sha256="1353lzfgvq8236ijxy8521r7hhmgyfrvc17ga8p8c0851nx53xn3"; depends=[sp maptools MASS spatstat]; }; +trip = derive { name="trip"; version="1.1-21"; sha256="0rawckw3xd8kz2jn6xgspgl5axabjcp4xh4kp93n3h41xlarv9xa"; depends=[sp maptools MASS raster spatstat]; }; tripEstimation = derive { name="tripEstimation"; version="0.0-42"; sha256="17spnvrrqv89vldd496wc1psmaby0mhw9nh0qnfm7yc2jcqaf5nb"; depends=[lattice mgcv rgdal sp zoo]; }; tripack = derive { name="tripack"; version="1.3-6"; sha256="1dknz1arzfyknip04a9fxdhqmrkb0r0lr8hgria9s0d57hr1ay12"; depends=[]; }; trotter = derive { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; @@ -6497,21 +6626,21 @@ varSelRF = derive { name="varSelRF"; version="0.7-5"; sha256="1800d9vvkqpxjvmiqd varSelectIP = derive { name="varSelectIP"; version="0.2-1"; sha256="180lzsg48hnlcmhpk0a5yzmy2syw8yr7f5npnyspx3897hjag1vp"; depends=[MASS mvtnorm]; }; varbvs = derive { name="varbvs"; version="1.0"; sha256="0ywgb6ibijffjjzqqb5lvh1lk5qznwwiq7kbsyzkwcxbp8xkabjw"; depends=[]; }; vardiag = derive { name="vardiag"; version="0.2-0"; sha256="0avj900zx4nr67dk08n0n6arxx2cb2ymm0kd5xxnzsmyrmwm40mm"; depends=[]; }; -vardpoor = derive { name="vardpoor"; version="0.3.0"; sha256="0gdvnz86c96i90zvbp5a6ljq4pcnx2zcqb0rbhcqhylcyqys054w"; depends=[data_table laeken stringr reshape2 foreach plyr gdata MASS]; }; +vardpoor = derive { name="vardpoor"; version="0.3.2"; sha256="0vb684yhvafdmzphx4vv8gqih10x3mj8vmwshppwfgd3jp76dnps"; depends=[data_table laeken stringr reshape2 foreach plyr gdata MASS]; }; vars = derive { name="vars"; version="1.5-2"; sha256="1q45z5b07ww4nafrvjl48z0w1zpck3cd8fssgwgh4pw84id3dyjh"; depends=[MASS strucchange urca lmtest sandwich]; }; vartors = derive { name="vartors"; version="0.2.6"; sha256="04dynqs903clllk9nyynh3dr7msxn5rr5jmw6ql86ppd5w3da0rl"; depends=[]; }; vbdm = derive { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; }; vbsr = derive { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; }; -vcd = derive { name="vcd"; version="1.3-2"; sha256="1ww69sgg178aqcs90mm599nlr6hnxn54d2wzyhddgx1z3qxhzwjd"; depends=[MASS colorspace]; }; +vcd = derive { name="vcd"; version="1.4-0"; sha256="0gp137hlkg1wm8bhfdpswz0g05a4biprfa5r9i1fz5w0myqgpxca"; depends=[MASS colorspace lmtest]; }; vcdExtra = derive { name="vcdExtra"; version="0.6-8"; sha256="00nxvq5fn5il3lmip8ag22cqc2sxlbl1rqw5zxp309wp4nrm5i2v"; depends=[vcd gnm MASS]; }; vcrpart = derive { name="vcrpart"; version="0.3-3"; sha256="0rnf9cwynfwr956hwj4kxqiqq3cdw4wf5ia73s7adxixh5kpqxqa"; depends=[partykit nlme rpart numDeriv ucminf zoo sandwich strucchange]; }; vdg = derive { name="vdg"; version="1.1"; sha256="08bl7835m5c62lgaghgnd80zlbic6i80sjfxdr39a715bxpr8g3b"; depends=[ggplot2 quantreg proxy gridExtra]; }; -vdmR = derive { name="vdmR"; version="0.1.0"; sha256="0rv9c6bn711dn1fhgmr4ig0lr9s6yjk7r5ccvyiadgn6g5mr2bds"; depends=[ggplot2 plyr maptools gridSVG rjson GGally Rook dplyr]; }; +vdmR = derive { name="vdmR"; version="0.1.1"; sha256="0hmn7xgi1dzril6jdwxkpxp8isin0kxn3yb5fmcyfjhf03kcv4d4"; depends=[ggplot2 plyr maptools gridSVG rjson GGally Rook dplyr]; }; vec2dtransf = derive { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; vecsets = derive { name="vecsets"; version="1.1"; sha256="0k27g3frc9y9z2qlm19kfpls6wl0422dilhdlk6096f1fp3mc6ij"; depends=[]; }; vectoptim = derive { name="vectoptim"; version="0.2"; sha256="1n19sipx5r0qy08jmrbsrf0kgwgl31np88wc1zyc2bkx8h1zkmf2"; depends=[foreach doParallel]; }; -vegan = derive { name="vegan"; version="2.2-1"; sha256="06rq9qrcf180isjrczscl84m3jvygz5w2gz5nc4rm1pg89rf6lrd"; depends=[permute lattice MASS cluster mgcv]; }; -vegan3d = derive { name="vegan3d"; version="0.65-0"; sha256="0c75hybhwqv56f2zpskr99rr9k6hw6rbv29bcxn0fciw5jqk01m3"; depends=[vegan rgl scatterplot3d]; }; +vegan = derive { name="vegan"; version="2.3-0"; sha256="1zlz2zq0818735db4l8gfwwxxd5dc0xnx6v8cq6mfclkw1qhcdpx"; depends=[permute lattice MASS cluster mgcv]; }; +vegan3d = derive { name="vegan3d"; version="0.65-1"; sha256="03rzv7l2jjrahj3492ysalyizkv24by35nrhd1bnlb1s88sav7sr"; depends=[vegan rgl scatterplot3d]; }; vegclust = derive { name="vegclust"; version="1.6.3"; sha256="0l6j4sgzfqvcypx2dszpnsd1sivk33pixlgf9abqifp45skpkwfg"; depends=[vegan sp]; }; vegdata = derive { name="vegdata"; version="0.6.9"; sha256="1a8b8wwsxq8090cj8pxw1digllmc2rnby8immjfmbi5rzjbksgi3"; depends=[foreign XML]; }; vegetarian = derive { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; }; @@ -6522,7 +6651,7 @@ vines = derive { name="vines"; version="1.1.3"; sha256="1m862kgcwfz2af00p3vqg959 violinmplot = derive { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; }; vioplot = derive { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; }; viopoints = derive { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; -virtualspecies = derive { name="virtualspecies"; version="1.0"; sha256="1qg5106ja17nsqzjnyswjf438f55195l197pizkybb2ilg4fw0x1"; depends=[raster ade4 dismo rworldmap]; }; +virtualspecies = derive { name="virtualspecies"; version="1.1"; sha256="0znrb6xqyzddd1r999rhx6ix6wgpj1laf5bcns7zgmq6zb39j74s"; depends=[raster ade4 dismo rworldmap]; }; visreg = derive { name="visreg"; version="2.2-0"; sha256="1hnyrfgyk5fign5l35aql2q7q4mmw3jby5pkv696h8k1mc8qq096"; depends=[lattice]; }; visualFields = derive { name="visualFields"; version="0.4.2"; sha256="14plg94g4znl8n6798na2rivjjamjgayqkk1qwn1nx5df040l4q5"; depends=[gridBase flip matrixStats Hmisc]; }; visualize = derive { name="visualize"; version="4.2"; sha256="1jgk7j0f3p72wbqnmplrgpy7hlh7k2cmvx83gr2zfnbhygdi22mk"; depends=[]; }; @@ -6563,10 +6692,11 @@ wfe = derive { name="wfe"; version="1.3"; sha256="16b39i60x10kw6yz44ff19h638s9ls wgaim = derive { name="wgaim"; version="1.4-8"; sha256="1x1dgxw1viswdqd1k1gfbpipzhgy13lhncji0wlsgpcgfa40ap1a"; depends=[qtl lattice]; }; wgsea = derive { name="wgsea"; version="1.8"; sha256="1114wik011sm2n12bwm2bhqvdxagbhbscif45k4pgxdkahy2abpi"; depends=[]; }; whisker = derive { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; }; +whoami = derive { name="whoami"; version="1.1.0"; sha256="15mj1s0dfr9y14b23nx0506r0vz48bm1f6mf0fi7b390q0zmndq7"; depends=[httr jsonlite]; }; widals = derive { name="widals"; version="0.5.4"; sha256="1bl59s1r4gkvq4nkf94fk7m0zvhbrszkgmig66lfxhyvk9r84fvb"; depends=[snowfall]; }; widenet = derive { name="widenet"; version="0.1-2"; sha256="1nimm8szbg82vg00f5c7b3f3sk0gplssbl4ggasjnh7dl621vfny"; depends=[glmnet relaxnet]; }; wikibooks = derive { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; -wikipediatrend = derive { name="wikipediatrend"; version="0.2.0"; sha256="11gxi94i6xfsj4dz7g2r7ag0gbah2km9ibbmjqihbk5ccxh5kfd6"; depends=[jsonlite stringr RCurl]; }; +wikipediatrend = derive { name="wikipediatrend"; version="1.1.4"; sha256="1ccqwnlp0zchjqwxpy1li4wlgjlmdq3vdz6nrcgg7npplq4f6pjl"; depends=[jsonlite stringr rvest httr RCurl]; }; wildlifeDI = derive { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[sp rgeos adehabitatLT]; }; windex = derive { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[geiger ape scatterplot3d]; }; witness = derive { name="witness"; version="1.2"; sha256="1pccn7czm1q0w31zpmky5arkcbnfl94gh1nnkf8kmcccdrr3lxph"; depends=[]; }; @@ -6582,14 +6712,14 @@ wordnet = derive { name="wordnet"; version="0.1-10"; sha256="1k0ncxqsvv5vd5xm6nx wpp2008 = derive { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; -wppExplorer = derive { name="wppExplorer"; version="1.6-1"; sha256="1pgfh9r98yfrk8228iw5hl5pdb4ki6pz49hpf796frd86d94hw0a"; depends=[shiny plyr reshape2 googleVis wpp2012 Hmisc ggplot2]; }; +wppExplorer = derive { name="wppExplorer"; version="1.6-2"; sha256="1y9mdghq4is81gabx47pm1kfay67zv3b9hxz58lhml68wwwsfmsj"; depends=[shiny plyr reshape2 googleVis wpp2012 Hmisc ggplot2]; }; wq = derive { name="wq"; version="0.4.3"; sha256="1lgxf5pfw3563dpyq0dgj4ps2mc5nqh56y1i77ypscj5lrcgjxrf"; depends=[zoo ggplot2 reshape2]; }; wrassp = derive { name="wrassp"; version="0.1.3"; sha256="1xza4w5dgc6gda9ybmq386jnb1gkahdi6sds5dqay7pm5mjql6fl"; depends=[]; }; write_snns = derive { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; wrspathrow = derive { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[wrspathrowData sp raster rgeos rgdal]; }; wrspathrowData = derive { name="wrspathrowData"; version="1.0"; sha256="0a1aggcll0fmkwfg4h7rs4j5h3v1bh95dkbriwrb0bx0cikg63x3"; depends=[]; }; wskm = derive { name="wskm"; version="1.4.19"; sha256="16smir0b4pxkaxgr2vclq8kprpwn0y3fb43ba79q94d6m5hm844y"; depends=[lattice latticeExtra clv]; }; -wsrf = derive { name="wsrf"; version="1.4.0"; sha256="1b9ifswv0civaavmpzi2r3fdbccxg4akzvklqri0hj49kr4cw5pa"; depends=[Rcpp Rcpp]; }; +wsrf = derive { name="wsrf"; version="1.5.14"; sha256="0j0zlnazz40sv02fl8m5z7rv877m6ak2cms2q3ivy344k8ynjs0m"; depends=[Rcpp Rcpp]; }; wtcrsk = derive { name="wtcrsk"; version="1.3"; sha256="1viddyms2d9q2hb9z788fcs8vp7gp6vzlsszcnyxgganfjsd85zy"; depends=[]; }; wux = derive { name="wux"; version="2.0-0"; sha256="04casnfx5cam5a1iqm2x6lldicv11zqxgxjb61qcivga781g5sxg"; depends=[sp ncdf reshape abind fields rgdal rgeos class stringr Hmisc gdata corpcor rworldmap]; }; x_ent = derive { name="x.ent"; version="1.1.2"; sha256="1wq1gf656jpd6aw08b0g9319gb087zqgn7bzw4amq4k8vk9vjkjm"; depends=[opencpu rJava stringr xtable jsonlite venneuler ggplot2 statmod]; }; @@ -6601,23 +6731,24 @@ xhmmScripts = derive { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64 xkcd = derive { name="xkcd"; version="0.0.4"; sha256="1hwr3ylgflzizgp8ffwdv9cgcngpjwmpxvgrvg8ad89a40l1mxcr"; depends=[ggplot2 extrafont Hmisc]; }; xlsx = derive { name="xlsx"; version="0.5.7"; sha256="0qxkdpf1dvi0x7fy65abjx2j60rdx7fv5yi8l2wdm0f2631pnwin"; depends=[rJava xlsxjars]; }; xlsxjars = derive { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; -xml2 = derive { name="xml2"; version="0.1.0"; sha256="0p00lg8p5naw77k2fk6wbqmqdhj9iv2zn7g00gp7g253lmm8q740"; depends=[Rcpp Rcpp BH]; }; +xml2 = derive { name="xml2"; version="0.1.1"; sha256="1k6xzgx87vqzg1lkc1jaxxlw7zyhzqsis51q5p9jn0q3pw02qf53"; depends=[Rcpp Rcpp BH]; }; xoi = derive { name="xoi"; version="0.61-1"; sha256="0ypy0rb0f0bns41vjzyln04k3hypgr3wysqbdi0b0r14ip5rb47k"; depends=[qtl]; }; xpose4 = derive { name="xpose4"; version="4.5.3"; sha256="02m3ad4287ljsi4qrzwd84lfj1y6rz9nias2zk4cbqm14gf19pdf"; depends=[lattice gam Hmisc survival]; }; xtable = derive { name="xtable"; version="1.7-4"; sha256="1fvx4p058ygsyj9f4xb9k5h0fdi4zibadqrsn4qbx4am30qrlqj7"; depends=[]; }; xtal = derive { name="xtal"; version="1.0"; sha256="1717pl64nbliwbdg5fs6cwj7zvgrm00zlyj2dhi06yyg16gq1w8k"; depends=[]; }; -xtermStyle = derive { name="xtermStyle"; version="2.2-4"; sha256="0m1lwr7smym7aczcqqgqj5bx46j38ymmljilxl54bby188qhfcyz"; depends=[]; }; +xtermStyle = derive { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; xts = derive { name="xts"; version="0.9-7"; sha256="163hzcnxrdb4lbsnwwv7qa00h4qlg4jm289acgvbg4jbiywpq7zi"; depends=[zoo]; }; -yaImpute = derive { name="yaImpute"; version="1.0-23"; sha256="11k7ab5s9zldn0py7zhgi1zcbpsw3bp2xf6s6salv68fhzdgpzp8"; depends=[]; }; +yaImpute = derive { name="yaImpute"; version="1.0-24"; sha256="0vqzcxkrnsj99kpc4fx9lbm446fjgsjcbfakm9pdk013mxiii72d"; depends=[]; }; yacca = derive { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11mshrdb8w4r2pqq360dracpn0ak6x"; depends=[]; }; yaml = derive { name="yaml"; version="2.1.13"; sha256="18kz5mfn7qpif5pn91w4vbrc5bkycsj85vwm5wxwzjlb02i9mxi6"; depends=[]; }; ycinterextra = derive { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; }; yhat = derive { name="yhat"; version="2.0-0"; sha256="0vdhkknmms7zy7iha894jn1hr1h5w67pr53r0q67m7p404w21iza"; depends=[yacca miscTools plotrix boot]; }; yhatr = derive { name="yhatr"; version="0.13.4"; sha256="1z1i48nhyadn1l00sw50qif2zyjvy1jbvq91chnapfdbjjsgfv2x"; depends=[httr RCurl rjson plyr jsonlite stringr]; }; ykmeans = derive { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[plyr foreach]; }; -yuima = derive { name="yuima"; version="1.0.36"; sha256="1rz96v0c9sikjvm3i8x887v1bkiixps691vclpd6i4cchyayx63h"; depends=[zoo expm cubature mvtnorm]; }; +yuima = derive { name="yuima"; version="1.0.71"; sha256="0aqb87jlvlq6iw2mlngiylvayd6y2wrc82zl1za442gqq8py00if"; depends=[zoo expm cubature mvtnorm]; }; zCompositions = derive { name="zCompositions"; version="1.0.3"; sha256="0lxy201ys9dvv8c09q8wbks1c2jkjyd1bbrxhjr7zi9j7m0parl7"; depends=[MASS NADA truncnorm]; }; zendeskR = derive { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; +zetadiv = derive { name="zetadiv"; version="0.1"; sha256="1p9mxy70mgqxjn7szh44217nvhjh90237kp5znli1r01ch64mx6b"; depends=[car mgcv vegan]; }; zic = derive { name="zic"; version="0.8.1"; sha256="05mn894qdx6k7158dbsjy2b49n0gz5xnmlixr2dhkxc12ydj6zs5"; depends=[Rcpp RcppArmadillo coda Rcpp RcppArmadillo]; }; zipcode = derive { name="zipcode"; version="1.0"; sha256="1lvlf1h5fv412idpdssjfh4fki933dm5nhr41ppl1mf45b9j7azn"; depends=[]; }; zipfR = derive { name="zipfR"; version="0.6-6"; sha256="1y3nqfjg5m89mdvcmqwjmwlc8p3hpcqnwv4ji1a7ggg4n63lwl3j"; depends=[]; }; From d7f36310d03a418ea43278b76de559c6fbfa2a8c Mon Sep 17 00:00:00 2001 From: Robert Helgesson Date: Fri, 12 Jun 2015 00:17:53 +0200 Subject: [PATCH 12/90] Remove use of builderDefsPackage in font packages. With this change they now use `stdenv.mkDerivation` instead. Also some minor cleanups such as URL fixes, adding version numbers, adding descriptions, etc. --- pkgs/data/fonts/andagii/default.nix | 74 +++++++---------------- pkgs/data/fonts/anonymous-pro/default.nix | 70 +++++++++------------ pkgs/data/fonts/cm-unicode/default.nix | 54 +++++++---------- pkgs/data/fonts/eb-garamond/default.nix | 64 +++++++------------- pkgs/data/fonts/gentium/default.nix | 63 +++++++------------ pkgs/data/fonts/inconsolata/default.nix | 63 ++++++------------- pkgs/data/fonts/oldstandard/default.nix | 67 +++++++------------- pkgs/data/fonts/theano/default.nix | 67 +++++++------------- 8 files changed, 181 insertions(+), 341 deletions(-) diff --git a/pkgs/data/fonts/andagii/default.nix b/pkgs/data/fonts/andagii/default.nix index 8143d284120..562aa8be4ef 100644 --- a/pkgs/data/fonts/andagii/default.nix +++ b/pkgs/data/fonts/andagii/default.nix @@ -1,59 +1,31 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - url="http://www.i18nguy.com/unicode/andagii.zip"; - name="andagii"; - version="1.0.2"; - hash="0cknb8vin15akz4ahpyayrpqyaygp9dgrx6qw7zs7d6iv9v59ds1"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; +stdenv.mkDerivation rec { + name = "andagii-${version}"; + version = "1.0.2"; + + src = fetchzip { + url = http://www.i18nguy.com/unicode/andagii.zip; + sha256 = "0a0c43y1fd5ksj50axhng7p00kgga0i15p136g68p35wj7kh5g2k"; + stripRoot = false; curlOpts = "--user-agent 'Mozilla/5.0'"; - sha256 = sourceInfo.hash; }; - name = "${sourceInfo.name}-${sourceInfo.version}"; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - /* doConfigure should be removed if not needed */ - phaseNames = ["doUnpack" "doInstall"]; + installPhase = '' + mkdir -p $out/share/fonts/truetype + cp -v ANDAGII_.TTF $out/share/fonts/truetype/andagii.ttf + ''; - doUnpack = a.fullDepEntry '' - unzip "${src}" - '' ["addInputs"]; - - doInstall = a.fullDepEntry ('' - mkdir -p "$out"/share/fonts/ttf/ - cp ANDAGII_.TTF "$out"/share/fonts/ttf/andagii.ttf - '') ["defEnsureDir" "minInit"]; - - meta = { + # There are multiple claims that the font is GPL, so I include the + # package; but I cannot find the original source, so use it on your + # own risk Debian claims it is GPL - good enough for me. + meta = with stdenv.lib; { + homepage = http://www.i18nguy.com/unicode/unicode-font.HTML; description = "Unicode Plane 1 Osmanya script font"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - hydraPlatforms = []; - # There are multiple claims that the font is GPL, - # so I include the package; but I cannot find the - # original source, so use it on your own risk - # Debian claims it is GPL - good enough for me. + maintainers = with maintainers; [ raskin rycee ]; + license = "unknown"; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://www.i18nguy.com/unicode/unicode-font.html"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/anonymous-pro/default.nix b/pkgs/data/fonts/anonymous-pro/default.nix index 5b51ee36c5c..da34a2f43aa 100644 --- a/pkgs/data/fonts/anonymous-pro/default.nix +++ b/pkgs/data/fonts/anonymous-pro/default.nix @@ -1,50 +1,36 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchurl, unzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version = "1.002"; - name="anonymousPro"; - url="http://www.ms-studio.com/FontSales/AnonymousPro-${version}.zip"; +stdenv.mkDerivation rec { + name = "anonymousPro-${version}"; + version = "1.002"; + + src = fetchurl { + url = "http://www.marksimonson.com/assets/content/fonts/AnonymousPro-${version}.zip"; sha256 = "1asj6lykvxh46czbal7ymy2k861zlcdqpz8x3s5bbpqwlm3mhrl6"; }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.sha256; - }; - name = "${sourceInfo.name}-${sourceInfo.version}"; - inherit buildInputs; + nativeBuildInputs = [ unzip ]; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/truetype + mkdir -p $out/share/doc/${name} + find . -name "*.ttf" -exec cp -v {} $out/share/fonts/truetype \; + find . -name "*.txt" -exec cp -v {} $out/share/doc/${name} \; + ''; - doUnpack = a.fullDepEntry ('' - unzip ${src} - cd AnonymousPro*/ - '') ["addInputs"]; - - meta = { + meta = with stdenv.lib; { + homepage = http://www.marksimonson.com/fonts/view/anonymous-pro; description = "TrueType font set intended for source code"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; - license = with a.lib.licenses; ofl; - hydraPlatforms = []; - homepage = "http://www.marksimonson.com/fonts/view/anonymous-pro"; - downloadPage = "http://www.ms-studio.com/FontSales/anonymouspro.html"; - inherit (sourceInfo) version; + longDescription = '' + Anonymous Pro (2009) is a family of four fixed-width fonts + designed with coding in mind. Anonymous Pro features an + international, Unicode-based character set, with support for + most Western and Central European Latin-based languages, plus + Greek and Cyrillic. It is designed by Mark Simonson. + ''; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; -}) x - +} diff --git a/pkgs/data/fonts/cm-unicode/default.nix b/pkgs/data/fonts/cm-unicode/default.nix index d8f6f7f8351..ed7ce93e189 100644 --- a/pkgs/data/fonts/cm-unicode/default.nix +++ b/pkgs/data/fonts/cm-unicode/default.nix @@ -1,40 +1,28 @@ -x@{builderDefsPackage - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchurl }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version = "0.7.0"; - baseName="cm-unicode"; - name="${baseName}-${version}"; - url="mirror://sourceforge/${baseName}/${baseName}/${version}/${name}-otf.tar.xz"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; +stdenv.mkDerivation rec { + name = "cm-unicode-${version}"; + version = "0.7.0"; + + src = fetchurl { + url = "mirror://sourceforge/cm-unicode/cm-unicode/${version}/${name}-otf.tar.xz"; sha256 = "0a0w9qm9g8qz2xh3lr61bj1ymqslqsvk4w2ybc3v2qa89nz7x2jl"; }; - inherit (sourceInfo) name version; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + mkdir -p $out/share/doc/${name} + cp -v *.otf $out/share/fonts/opentype/ + cp -v README FontLog.txt $out/share/doc/${name} + ''; - meta = { - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; - downloadPage = "http://sourceforge.net/projects/cm-unicode/files/cm-unicode/"; - inherit version; + meta = with stdenv.lib; { + homepage = http://canopus.iacp.dvo.ru/~panov/cm-unicode/; + description = "Computer Modern Unicode fonts"; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; -}) x - +} diff --git a/pkgs/data/fonts/eb-garamond/default.nix b/pkgs/data/fonts/eb-garamond/default.nix index 99c9b53217e..0956250e36c 100644 --- a/pkgs/data/fonts/eb-garamond/default.nix +++ b/pkgs/data/fonts/eb-garamond/default.nix @@ -1,50 +1,28 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version="0.016"; - name="EBGaramond"; - url="https://bitbucket.org/georgd/eb-garamond/downloads/${name}-${version}.zip"; - hash="0y630khn5zh70al3mm84fs767ac94ffyz1w70zzhrhambx07pdx0"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; +stdenv.mkDerivation rec { + name = "eb-garamond-${version}"; + version = "0.016"; + + src = fetchzip { + url = "https://bitbucket.org/georgd/eb-garamond/downloads/EBGaramond-${version}.zip"; + sha256 = "0j40bg1di39q7zis64il67xchldyznrl8wij9il10c4wr8nl4r9z"; }; - name = "eb-garamond-${sourceInfo.version}"; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + mkdir -p $out/share/doc/${name} + cp -v "otf/"*.otf $out/share/fonts/opentype/ + cp -v Changes README.markdown README.xelualatex $out/share/doc/${name} + ''; - # This will clean up if/when 8263996 lands. - doUnpack = a.fullDepEntry ('' - unzip ${src} - cd ${sourceInfo.name}* - mv {ttf,otf}/* . - '') ["addInputs"]; - - meta = with a.lib; { - description = "Digitization of the Garamond shown on the Egenolff-Berner specimen"; - maintainers = with maintainers; [ relrod ]; - platforms = platforms.all; - license = licenses.ofl; + meta = with stdenv.lib; { homepage = http://www.georgduffner.at/ebgaramond/; + description = "Digitization of the Garamond shown on the Egenolff-Berner specimen"; + maintainers = with maintainers; [ relrod rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "https://github.com/georgd/EB-Garamond/releases"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/gentium/default.nix b/pkgs/data/fonts/gentium/default.nix index a4e8099db96..d0af6ce0eb0 100644 --- a/pkgs/data/fonts/gentium/default.nix +++ b/pkgs/data/fonts/gentium/default.nix @@ -1,46 +1,29 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version="1.504"; - baseName="GentiumPlus"; - name="${baseName}-${version}"; - url="http://scripts.sil.org/cms/scripts/render_download.php?&format=file&media_id=${name}.zip&filename=${name}"; - hash="04kslaqbscpfrc6igkifcv1nkrclrm35hqpapjhw9102wpq12fpr"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; - name = "${sourceInfo.name}.zip"; +stdenv.mkDerivation rec { + name = "gentium-${version}"; + version = "1.504"; + + src = fetchzip { + name = "${name}.zip"; + url = "http://scripts.sil.org/cms/scripts/render_download.php?format=file&media_id=GentiumPlus-${version}.zip&filename=${name}.zip"; + sha256 = "1xdx80dfal0b8rkrp1janybx2hki7algnvkx4hyghgikpjcjkdh7"; }; - inherit (sourceInfo) name version; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["addInputs" "doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/truetype + mkdir -p $out/share/doc/${name} + cp -v *.ttf $out/share/fonts/truetype/ + cp -v FONTLOG.txt GENTIUM-FAQ.txt README.txt $out/share/doc/${name} + ''; - meta = { - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; + meta = with stdenv.lib; { + homepage = "http://scripts.sil.org/cms/scripts/page.php?site_id=nrsi&item_id=Gentium"; + description = "A high-quality typeface family for Latin, Cyrillic, and Greek"; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://scripts.sil.org/cms/scripts/page.php?item_id=Gentium_download"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/inconsolata/default.nix b/pkgs/data/fonts/inconsolata/default.nix index 887f37c241b..caa67256a1f 100644 --- a/pkgs/data/fonts/inconsolata/default.nix +++ b/pkgs/data/fonts/inconsolata/default.nix @@ -1,51 +1,26 @@ -x@{builderDefsPackage - , fontforge - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchurl }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - name="inconsolata"; - url="http://www.levien.com/type/myfonts/Inconsolata.sfd"; - hash="1cd29c8396adb18bfeddb1abf5bdb98b677649bb9b09f126d1335b123a4cfddb"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; +stdenv.mkDerivation rec { + name = "inconsolata-${version}"; + version = "1.010"; + + src = fetchurl { + url = "http://www.levien.com/type/myfonts/Inconsolata.otf"; + sha256 = "06js6znbcf7swn8y3b8ki416bz96ay7d3yvddqnvi88lqhbfcq8m"; }; - inherit (sourceInfo) name; - inherit buildInputs; + phases = [ "installPhase" ]; - /* doConfigure should be removed if not needed */ - phaseNames = ["copySrc" "generateFontsFromSFD" "installFonts"]; - - copySrc = a.fullDepEntry ('' - cp ${src} inconsolata.sfd - '') ["minInit"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + cp -v $src $out/share/fonts/opentype/inconsolata.otf + ''; - generateFontsFromSFD = a.generateFontsFromSFD // {deps=["addInputs"];}; - - meta = { + meta = with stdenv.lib; { + homepage = http://www.levien.com/type/myfonts/inconsolata.html; description = "A monospace font for both screen and print"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://www.levien.com/type/myfonts/inconsolata.html"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/oldstandard/default.nix b/pkgs/data/fonts/oldstandard/default.nix index ad25ac7fd95..125a4b636a9 100644 --- a/pkgs/data/fonts/oldstandard/default.nix +++ b/pkgs/data/fonts/oldstandard/default.nix @@ -1,50 +1,29 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version="2.2"; - baseName="oldstandard"; - name="${baseName}-${version}"; - url="http://www.thessalonica.org.ru/downloads/${name}.otf.zip"; - hash="0xhbksrh9mv1cs6dl2mc8l6sypialy9wirkjr54nf7s9bcynv1h6"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; +stdenv.mkDerivation rec { + name = "oldstandard-${version}"; + version = "2.2"; + + src = fetchzip { + stripRoot = false; + url = "https://github.com/akryukov/oldstand/releases/download/v${version}/${name}.otf.zip"; + sha256 = "1hl78jw5szdjq9dhbcv2ln75wpp2lzcxrnfc36z35v5wk4l7jc3h"; }; - inherit (sourceInfo) name version; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + mkdir -p $out/share/doc/${name} + cp -v *.otf $out/share/fonts/opentype/ + cp -v FONTLOG.txt $out/share/doc/${name} + ''; - doUnpack = a.fullDepEntry '' - unzip ${src} - '' ["addInputs"]; - - meta = { - description = "An old-style font"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; + meta = with stdenv.lib; { + homepage = https://github.com/akryukov/oldstand; + description = "An attempt to revive a specific type of Modern style of serif typefaces"; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://www.thessalonica.org.ru/ru/fonts-download.html"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/theano/default.nix b/pkgs/data/fonts/theano/default.nix index ca560c72a8e..c385c3d40a9 100644 --- a/pkgs/data/fonts/theano/default.nix +++ b/pkgs/data/fonts/theano/default.nix @@ -1,50 +1,29 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version="2.0"; - baseName="theano"; - name="${baseName}-${version}"; - url="http://www.thessalonica.org.ru/downloads/${name}.otf.zip"; - hash="1xiykqbbiawvfk33639awmgdn25b8s2k7vpwncl17bzlk887b4z6"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; +stdenv.mkDerivation rec { + name = "theano-${version}"; + version = "2.0"; + + src = fetchzip { + stripRoot = false; + url = "https://github.com/akryukov/theano/releases/download/v${version}/theano-${version}.otf.zip"; + sha256 = "1z3c63rcp4vfjyfv8xwc3br10ydwjyac3ipbl09y01s7qhfz02gp"; }; - inherit (sourceInfo) name version; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + mkdir -p $out/share/doc/${name} + find . -name "*.otf" -exec cp -v {} $out/share/fonts/opentype \; + find . -name "*.txt" -exec cp -v {} $out/share/doc/${name} \; + ''; - doUnpack = a.fullDepEntry '' - unzip ${src} - '' ["addInputs"]; - - meta = { - description = "An old-style font"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; + meta = with stdenv.lib; { + homepage = https://github.com/akryukov/theano; + description = "An old-style font designed from historic samples"; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://www.thessalonica.org.ru/ru/fonts-download.html"; - }; - }; -}) x - +} From fc964a15cbac5d8a3aeda806bf09cbbeab2862f3 Mon Sep 17 00:00:00 2001 From: Siarhei Zirukin Date: Sat, 13 Jun 2015 23:19:04 +0200 Subject: [PATCH 13/90] mpg123: 1.19.0 -> 1.22.2 --- pkgs/applications/audio/mpg123/default.nix | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/pkgs/applications/audio/mpg123/default.nix b/pkgs/applications/audio/mpg123/default.nix index 3edb7ae6793..eb1f8f4faa8 100644 --- a/pkgs/applications/audio/mpg123/default.nix +++ b/pkgs/applications/audio/mpg123/default.nix @@ -1,11 +1,11 @@ {stdenv, fetchurl, alsaLib }: -stdenv.mkDerivation { - name = "mpg123-1.19.0"; +stdenv.mkDerivation rec { + name = "mpg123-1.22.2"; src = fetchurl { - url = mirror://sourceforge/mpg123/mpg123-1.19.0.tar.bz2; - sha256 = "06xhd68mj9yp0r6l771aq0d7xgnl402a3wm2mvhxmd3w3ph29446"; + url = "mirror://sourceforge/mpg123/${name}.tar.bz2"; + sha256 = "0i1phi6fdjas37y00h3j8rb0b8ngr9az6hy5ff5bl53ify3j87kd"; }; buildInputs = stdenv.lib.optional (!stdenv.isDarwin) alsaLib; @@ -16,8 +16,9 @@ stdenv.mkDerivation { }; meta = { - description = "Command-line MP3 player"; - homepage = http://mpg123.sourceforge.net/; - license = "LGPL"; + description = "Fast console MPEG Audio Player and decoder library"; + homepage = http://mpg123.org; + license = stdenv.lib.licenses.lgpl21; + maintainers = [ stdenv.lib.maintainers.ftrvxmtrx ]; }; } From 4e0fb6578af581f375c21820bd94bcba3e279eb1 Mon Sep 17 00:00:00 2001 From: Pascal Wittmann Date: Sun, 14 Jun 2015 21:44:18 +0200 Subject: [PATCH 14/90] strongswan: update from 5.2.1 to 5.3.2, fixes CVE-2015-4171 --- pkgs/tools/networking/strongswan/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/networking/strongswan/default.nix b/pkgs/tools/networking/strongswan/default.nix index 871cd3e8f47..d65f1ac4335 100644 --- a/pkgs/tools/networking/strongswan/default.nix +++ b/pkgs/tools/networking/strongswan/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, gmp, pkgconfig, python, autoreconfHook }: stdenv.mkDerivation rec { - name = "strongswan-5.2.1"; + name = "strongswan-5.3.2"; src = fetchurl { url = "http://download.strongswan.org/${name}.tar.bz2"; - sha256 = "05cjjd7gg65bl6fswj2r2i13nn1nk4x86s06y75gwfdvnlrsnlga"; + sha256 = "09gjrd5f8iykh926y35blxlm2hlzpw15m847d8vc9ga29s6brad4"; }; dontPatchELF = true; From dcffd285273718d3a35ed43e3a51e2a96fad7f72 Mon Sep 17 00:00:00 2001 From: Eric Merritt Date: Sun, 14 Jun 2015 13:22:46 -0700 Subject: [PATCH 15/90] ocp-build: upgrade to 1.99.9-beta This also allows ocp-build to build for ocaml 4.02 and greater --- pkgs/development/tools/ocaml/ocp-build/default.nix | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) diff --git a/pkgs/development/tools/ocaml/ocp-build/default.nix b/pkgs/development/tools/ocaml/ocp-build/default.nix index fe174febc9e..31b99ada2a3 100644 --- a/pkgs/development/tools/ocaml/ocp-build/default.nix +++ b/pkgs/development/tools/ocaml/ocp-build/default.nix @@ -1,17 +1,16 @@ -{ stdenv, fetchurl, ocaml, findlib, ncurses }: +{ stdenv, fetchurl, ocaml, findlib, ncurses, camlp4 }: stdenv.mkDerivation { - name = "ocp-build-1.99.8-beta"; + name = "ocp-build-1.99.9-beta"; src = fetchurl { - url = http://www.typerex.org/pub/ocp-build/ocp-build.1.99.8-beta.tar.gz; - sha256 = "03zqpl73ah0fji5baxmk8w0h7waamlnhhysi128yap4abzsh5w87"; + url = http://www.typerex.org/pub/ocp-build/ocp-build.1.99.9-beta.tar.gz; + sha256 = "0wcb49bp239ns9mz55ky0kfjcz80cp97k0j0rwaw4h5sp3phn4l0"; }; - buildInputs = [ ocaml findlib ncurses ]; - - patches = [ ./fix-for-no-term.patch ]; + buildInputs = [ ocaml findlib ncurses camlp4 ]; + preInstall = "mkdir -p $out/bin"; # In the Nix sandbox, the TERM variable is unset and stty does not # work. In such a case, ocp-build crashes due to a bug. The From f4d7b23a680ed497cfd64b3430cd33d458b4fc85 Mon Sep 17 00:00:00 2001 From: Pascal Wittmann Date: Mon, 15 Jun 2015 11:07:02 +0200 Subject: [PATCH 16/90] tomcat-connectors: update from 1.2.40 to 1.2.41-dev, fixes CVE-2014-8111 Using the prerelease version, because there was no response on when a new official release will happen, see http://tomcat.10.x6.nabble.com/Release-of-tomcat-connectors-1-2-41-td5035487.html --- .../http/apache-modules/tomcat-connectors/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix b/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix index 0e908acd74b..90d0fb899c3 100644 --- a/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix +++ b/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, apacheHttpd, jdk }: stdenv.mkDerivation rec { - name = "tomcat-connectors-1.2.40"; + name = "tomcat-connectors-1.2.41-dev-1613051"; src = fetchurl { - url = "http://www.apache.si/tomcat/tomcat-connectors/jk/${name}-src.tar.gz"; - sha256 = "0pbh6s19ba5k2kahiiqgx8lz8v4fjllzn0w6hjd08x7z9my38pl9"; + url = "http://people.apache.org/~rjung/mod_jk-dev/${name}-src.tar.gz"; + sha256 = "11khipjpy3y84j1pp7yyx76y64jccvyhh3klwzqxylff49vjc2fc"; }; configureFlags = "--with-apxs=${apacheHttpd}/bin/apxs --with-java-home=${jdk}"; From 6c382151fb86fdd34d3dacfc86c5fe98dd6ac3f2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= Date: Mon, 15 Jun 2015 11:28:38 +0200 Subject: [PATCH 17/90] imagemagick: remove mirrors that don't work /cc #8302. --- pkgs/build-support/fetchurl/mirrors.nix | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/pkgs/build-support/fetchurl/mirrors.nix b/pkgs/build-support/fetchurl/mirrors.nix index 0e2a6e756f6..2a3dbb40a2b 100644 --- a/pkgs/build-support/fetchurl/mirrors.nix +++ b/pkgs/build-support/fetchurl/mirrors.nix @@ -151,10 +151,9 @@ rec { # ImageMagick mirrors, see http://www.imagemagick.org/script/download.php. imagemagick = [ - ftp://ftp.nluug.nl/pub/ImageMagick/ + http://www.imagemagick.org/download/ + ftp://ftp.sunet.se/pub/multimedia/graphics/ImageMagick/ # also contains older versions removed from most mirrors ftp://ftp.imagemagick.org/pub/ImageMagick/ - ftp://ftp.imagemagick.net/pub/ImageMagick/ - ftp://ftp.sunet.se/pub/multimedia/graphics/ImageMagick/ ]; # CPAN mirrors. From cc5663de0c17d7b76418b570a459ecb8c33dc49d Mon Sep 17 00:00:00 2001 From: Luca Bruno Date: Mon, 15 Jun 2015 11:47:32 +0200 Subject: [PATCH 18/90] gnome3: easier to override packages --- pkgs/desktops/gnome-3/3.16/default.nix | 19 ++++++++++++++++--- pkgs/top-level/all-packages.nix | 5 +---- 2 files changed, 17 insertions(+), 7 deletions(-) diff --git a/pkgs/desktops/gnome-3/3.16/default.nix b/pkgs/desktops/gnome-3/3.16/default.nix index be60a58db26..89f4ea86829 100644 --- a/pkgs/desktops/gnome-3/3.16/default.nix +++ b/pkgs/desktops/gnome-3/3.16/default.nix @@ -1,6 +1,16 @@ -{ callPackage, pkgs, self }: +{ pkgs }: + +let + + pkgsFun = overrides: + let + self = self_ // overrides; + self_ = with self; { + + overridePackages = f: pkgsFun (f self); + + callPackage = pkgs.newScope self; -rec { corePackages = with gnome3; [ pkgs.desktop_file_utils pkgs.ibus pkgs.shared_mime_info # for update-mime-database @@ -293,4 +303,7 @@ rec { gtkhtml = callPackage ./misc/gtkhtml { }; -} + }; + in self; # pkgsFun + +in pkgsFun {} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 1f326977b8f..62622cd8a0d 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -13614,10 +13614,7 @@ let inherit (pkgs) libsoup libwnck gtk_doc gnome_doc_utils; }; - gnome3_16 = recurseIntoAttrs (callPackage ../desktops/gnome-3/3.16 { - callPackage = pkgs.newScope pkgs.gnome3_16; - self = pkgs.gnome3_16; - }); + gnome3_16 = recurseIntoAttrs (callPackage ../desktops/gnome-3/3.16 { }); gnome3 = gnome3_16; From b36629d8212527f72d7a5f7b8adf05fcdec1b77f Mon Sep 17 00:00:00 2001 From: Luca Bruno Date: Mon, 15 Jun 2015 11:52:26 +0200 Subject: [PATCH 19/90] gnome3: also pass self to overridePackages function --- pkgs/desktops/gnome-3/3.16/default.nix | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/pkgs/desktops/gnome-3/3.16/default.nix b/pkgs/desktops/gnome-3/3.16/default.nix index 89f4ea86829..2dee0cefd92 100644 --- a/pkgs/desktops/gnome-3/3.16/default.nix +++ b/pkgs/desktops/gnome-3/3.16/default.nix @@ -7,7 +7,9 @@ let self = self_ // overrides; self_ = with self; { - overridePackages = f: pkgsFun (f self); + overridePackages = f: + let newself = pkgsFun (f newself self); + in newself; callPackage = pkgs.newScope self; From 6c213c6e44e27abbb965ff59c94c5ebfcc142ddb Mon Sep 17 00:00:00 2001 From: koral Date: Wed, 10 Jun 2015 13:55:52 +0000 Subject: [PATCH 20/90] rmlint: 2.1.0 -> 2.2.0 (closes #8268) --- pkgs/tools/misc/rmlint/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/misc/rmlint/default.nix b/pkgs/tools/misc/rmlint/default.nix index 9e61a5c195e..392734e2256 100644 --- a/pkgs/tools/misc/rmlint/default.nix +++ b/pkgs/tools/misc/rmlint/default.nix @@ -4,11 +4,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "rmlint-${version}"; - version = "2.1.0"; + version = "2.2.0"; src = fetchurl { url = "https://github.com/sahib/rmlint/archive/v${version}.tar.gz"; - sha256 = "17hqkx1ji6rbvliji18my16b23ig9d6v4azgypwl0fam2ar4rm4g"; + sha256 = "1wg6br30ccvxl2189a75lb3d03kg8spfkkp9qlf3whl0xirsm15n"; }; configurePhase = "scons config"; From c2116191d36ca0df26a8e2f0ccd7dbd187f154d4 Mon Sep 17 00:00:00 2001 From: Damien Cassou Date: Mon, 15 Jun 2015 10:54:53 +0200 Subject: [PATCH 21/90] gnupg 2.1.4 -> 2.1.5 According to someone on #gnupg, the patch is not necessary anymore. --- pkgs/tools/security/gnupg/21.nix | 6 +- .../gnupg/socket-activate-2.1.1.patch | 170 ------------------ 2 files changed, 2 insertions(+), 174 deletions(-) delete mode 100644 pkgs/tools/security/gnupg/socket-activate-2.1.1.patch diff --git a/pkgs/tools/security/gnupg/21.nix b/pkgs/tools/security/gnupg/21.nix index 31a6bd2c460..34561c3c33d 100644 --- a/pkgs/tools/security/gnupg/21.nix +++ b/pkgs/tools/security/gnupg/21.nix @@ -13,15 +13,13 @@ with stdenv.lib; assert x11Support -> pinentry != null; stdenv.mkDerivation rec { - name = "gnupg-2.1.4"; + name = "gnupg-2.1.5"; src = fetchurl { url = "mirror://gnupg/gnupg/${name}.tar.bz2"; - sha256 = "1c3c89b7ziknz6h1dnwmfjhgyy28g982rcncrhmhylb8v3npw4k4"; + sha256 = "0k5818r847zplbrwjp6i48s6xb5zy44rny2kmbisd6y3c1qml45m"; }; - patches = [ ./socket-activate-2.1.1.patch ]; - postPatch = stdenv.lib.optionalString stdenv.isLinux '' sed -i 's,"libpcsclite\.so[^"]*","${pcsclite}/lib/libpcsclite.so",g' scd/scdaemon.c ''; diff --git a/pkgs/tools/security/gnupg/socket-activate-2.1.1.patch b/pkgs/tools/security/gnupg/socket-activate-2.1.1.patch deleted file mode 100644 index 2c2d7b54250..00000000000 --- a/pkgs/tools/security/gnupg/socket-activate-2.1.1.patch +++ /dev/null @@ -1,170 +0,0 @@ -Port Shea Levy's socket activation patch to version 2.1.1. - -diff -Naur gnupg-2.1.1-upstream/agent/gpg-agent.c gnupg-2.1.1/agent/gpg-agent.c ---- gnupg-2.1.1-upstream/agent/gpg-agent.c 2014-12-01 05:04:57.000000000 -0430 -+++ gnupg-2.1.1/agent/gpg-agent.c 2014-12-23 17:13:48.029286035 -0430 -@@ -125,7 +125,9 @@ - oPuttySupport, - oDisableScdaemon, - oDisableCheckOwnSocket, -- oWriteEnvFile -+ oWriteEnvFile, -+ oAgentFD, -+ oSSHAgentFD - }; - - -@@ -143,6 +145,8 @@ - ARGPARSE_group (301, N_("@Options:\n ")), - - ARGPARSE_s_n (oDaemon, "daemon", N_("run in daemon mode (background)")), -+ ARGPARSE_s_i (oAgentFD, "agent-fd", "@"), -+ ARGPARSE_s_i (oSSHAgentFD, "ssh-agent-fd", "@"), - ARGPARSE_s_n (oServer, "server", N_("run in server mode (foreground)")), - ARGPARSE_s_n (oVerbose, "verbose", N_("verbose")), - ARGPARSE_s_n (oQuiet, "quiet", N_("be somewhat more quiet")), -@@ -627,6 +631,31 @@ - return 1; /* handled */ - } - -+/* Handle agent socket(s) */ -+static void -+handle_agent_socks(int fd, int fd_extra, int fd_ssh) -+{ -+#ifndef HAVE_W32_SYSTEM -+ if (chdir("/")) -+ { -+ log_error ("chdir to / failed: %s\n", strerror (errno)); -+ exit (1); -+ } -+ -+ { -+ struct sigaction sa; -+ -+ sa.sa_handler = SIG_IGN; -+ sigemptyset (&sa.sa_mask); -+ sa.sa_flags = 0; -+ sigaction (SIGPIPE, &sa, NULL); -+ } -+#endif /*!HAVE_W32_SYSTEM*/ -+ -+ log_info ("%s %s started\n", strusage(11), strusage(13) ); -+ handle_connections (fd, fd_extra, fd_ssh); -+ assuan_sock_close (fd); -+} - - /* The main entry point. */ - int -@@ -643,6 +672,8 @@ - int default_config =1; - int pipe_server = 0; - int is_daemon = 0; -+ int fd_agent = GNUPG_INVALID_FD; -+ int fd_ssh_agent = GNUPG_INVALID_FD; - int nodetach = 0; - int csh_style = 0; - char *logfile = NULL; -@@ -850,6 +881,8 @@ - case oSh: csh_style = 0; break; - case oServer: pipe_server = 1; break; - case oDaemon: is_daemon = 1; break; -+ case oAgentFD: fd_agent = pargs.r.ret_int; break; -+ case oSSHAgentFD: fd_ssh_agent = pargs.r.ret_int; break; - - case oDisplay: default_display = xstrdup (pargs.r.ret_str); break; - case oTTYname: default_ttyname = xstrdup (pargs.r.ret_str); break; -@@ -940,7 +973,8 @@ - bind_textdomain_codeset (PACKAGE_GT, "UTF-8"); - #endif - -- if (!pipe_server && !is_daemon && !gpgconf_list) -+ if (!pipe_server && !is_daemon && !gpgconf_list && -+ fd_agent == GNUPG_INVALID_FD) - { - /* We have been called without any options and thus we merely - check whether an agent is already running. We do this right -@@ -1090,6 +1124,10 @@ - agent_deinit_default_ctrl (ctrl); - xfree (ctrl); - } -+ else if (fd_agent != GNUPG_INVALID_FD) -+ { -+ handle_agent_socks(fd_agent, GNUPG_INVALID_FD, fd_ssh_agent); -+ } - else if (!is_daemon) - ; /* NOTREACHED */ - else -@@ -1287,26 +1325,8 @@ - log_set_prefix (NULL, oldflags | JNLIB_LOG_RUN_DETACHED); - opt.running_detached = 1; - } -- -- if (chdir("/")) -- { -- log_error ("chdir to / failed: %s\n", strerror (errno)); -- exit (1); -- } -- -- { -- struct sigaction sa; -- -- sa.sa_handler = SIG_IGN; -- sigemptyset (&sa.sa_mask); -- sa.sa_flags = 0; -- sigaction (SIGPIPE, &sa, NULL); -- } --#endif /*!HAVE_W32_SYSTEM*/ -- -- log_info ("%s %s started\n", strusage(11), strusage(13) ); -- handle_connections (fd, fd_extra, fd_ssh); -- assuan_sock_close (fd); -+#endif /*!HAVE_W32_SYSTEM*/ -+ handle_agent_socks(fd, fd_extra, fd_ssh); - } - - return 0; -diff -Naur gnupg-2.1.1-upstream/doc/gpg-agent.texi gnupg-2.1.1/doc/gpg-agent.texi ---- gnupg-2.1.1-upstream/doc/gpg-agent.texi 2014-12-05 09:56:37.000000000 -0430 -+++ gnupg-2.1.1/doc/gpg-agent.texi 2014-12-23 16:26:38.366391186 -0430 -@@ -43,7 +43,15 @@ - .IR file ] - .RI [ options ] - .B \-\-daemon --.RI [ command_line ] -+.br -+.B gpg-agent -+.RB [ \-\-homedir -+.IR dir ] -+.RB [ \-\-options -+.IR file ] -+.RI [ options ] -+.B \-\-agent-fd -+.IR fd - @end ifset - - @mansect description -@@ -186,6 +194,11 @@ - a new process as a child of gpg-agent: @code{gpg-agent --daemon - /bin/sh}. This way you get a new shell with the environment setup - properly; if you exit from this shell, gpg-agent terminates as well. -+ -+@item --agent-fd @var{fd} -+@opindex agent-fd -+Start the gpg-agent using @var{fd} as the listening socket. This is useful for -+socket activation a la systemd and launchd. - @end table - - @mansect options -@@ -545,6 +558,12 @@ - remote machine. - - -+@item --ssh-agent-fd @var{fd} -+@opindex ssh-agent-fd -+ -+When starting the agent with @option{--agent-fd}, use this to pass in a socket -+to be used for the OpenSSH agent protocol. -+ - @anchor{option --enable-ssh-support} - @item --enable-ssh-support - @opindex enable-ssh-support From 5a5a5ade0fcc9317a7c75bde424aab3f32065e30 Mon Sep 17 00:00:00 2001 From: Tuomas Tynkkynen Date: Mon, 18 May 2015 01:40:26 +0300 Subject: [PATCH 22/90] libx86: Add patch from debian to fix build on ARM Without this, the build fails even with x86emu: make LIBRARY=static static make[1]: Entering directory '/tmp/nix-build-libx86-1.1.drv-0/libx86-1.1' gcc -O2 -Wall -DDEBUG -g -c -o x86-common.o x86-common.c gcc -O2 -Wall -DDEBUG -g -c -o thunk.o thunk.c thunk.c: In function 'x_inb': thunk.c:40:9: error: impossible constraint in 'asm' __asm__ __volatile__("in" #bwl " %w1, %" #bw "0" : "=a"(value) : "Nd"(port)); \ ^ thunk.c:44:1: note: in expansion of macro '__BUILDIO' __BUILDIO(b,b,char) ^ : recipe for target 'thunk.o' failed make[1]: *** [thunk.o] Error 1 make[1]: Leaving directory '/tmp/nix-build-libx86-1.1.drv-0/libx86-1.1' Makefile:17: recipe for target 'default' failed make: *** [default] Error 2 --- pkgs/development/libraries/libx86/default.nix | 4 +- .../libraries/libx86/non-x86.patch | 38 +++++++++++++++++++ 2 files changed, 40 insertions(+), 2 deletions(-) create mode 100644 pkgs/development/libraries/libx86/non-x86.patch diff --git a/pkgs/development/libraries/libx86/default.nix b/pkgs/development/libraries/libx86/default.nix index 09cc623cbb1..011e936548a 100644 --- a/pkgs/development/libraries/libx86/default.nix +++ b/pkgs/development/libraries/libx86/default.nix @@ -12,13 +12,13 @@ rec { inherit buildInputs; phaseNames = ["doPatch" "fixX86Def" "killUsr" "doMakeInstall"]; - patches = [./constants.patch]; + patches = [./constants.patch ./non-x86.patch]; # using BACKEND=x86emu on 64bit systems fixes: # http://www.mail-archive.com/suspend-devel@lists.sourceforge.net/msg02355.html makeFlags = [ "DESTDIR=$out" - ] ++ a.stdenv.lib.optionals ( a.stdenv.system == "x86_64-linux" ) [ "BACKEND=x86emu" ]; + ] ++ a.stdenv.lib.optionals ( a.stdenv.isx86_64 || a.stdenv.isArm ) [ "BACKEND=x86emu" ]; fixX86Def = a.fullDepEntry ('' sed -i lrmi.c -e 's@defined(__i386__)@(defined(__i386__) || defined(__x86_64__))@' diff --git a/pkgs/development/libraries/libx86/non-x86.patch b/pkgs/development/libraries/libx86/non-x86.patch new file mode 100644 index 00000000000..0d41cd737f0 --- /dev/null +++ b/pkgs/development/libraries/libx86/non-x86.patch @@ -0,0 +1,38 @@ +diff -Naur libx86-1.1+ds1.orig/Makefile libx86-1.1+ds1/Makefile +--- libx86-1.1+ds1.orig/Makefile 2008-05-19 12:28:59.000000000 +0300 ++++ libx86-1.1+ds1/Makefile 2012-02-20 01:32:03.750068423 +0200 +@@ -5,6 +5,7 @@ + ifeq ($(BACKEND),x86emu) + OBJECTS += thunk.o x86emu/decode.o x86emu/debug.o x86emu/fpu.o \ + x86emu/ops.o x86emu/ops2.o x86emu/prim_ops.o x86emu/sys.o ++ CFLAGS += -DX86EMU + else + OBJECTS += lrmi.o + endif +diff -Naur libx86-1.1+ds1.orig/thunk.c libx86-1.1+ds1/thunk.c +--- libx86-1.1+ds1.orig/thunk.c 2008-04-03 03:48:00.000000000 +0300 ++++ libx86-1.1+ds1/thunk.c 2012-02-20 01:12:56.468820192 +0200 +@@ -32,6 +32,7 @@ + #define TRUE 1 + #define FALSE 0 + ++#ifndef X86EMU + #define __BUILDIO(bwl,bw,type) \ + static inline void out##bwl##_local(unsigned long port, unsigned type value) { __asm__ __volatile__("out" #bwl " %" #bw "0, %w1" : : "a"(value), "Nd"(port)); \ + }\ +@@ -44,6 +45,15 @@ + __BUILDIO(b,b,char) + __BUILDIO(w,w,short) + __BUILDIO(l,,int) ++#else ++/* use libc functions */ ++#define inb_local inb ++#define inw_local inw ++#define inl_local inl ++#define outb_local outb ++#define outw_local outw ++#define outl_local outl ++#endif /* X86EMU */ + + + char *mmap_addr = SHMERRORPTR; From 7233ca0488707c23bac26914f41dea2513cd9ab3 Mon Sep 17 00:00:00 2001 From: Tuomas Tynkkynen Date: Mon, 18 May 2015 01:42:18 +0300 Subject: [PATCH 23/90] read-edid: New package at version 3.0.2 --- pkgs/os-specific/linux/read-edid/default.nix | 25 ++++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 ++ 2 files changed, 27 insertions(+) create mode 100644 pkgs/os-specific/linux/read-edid/default.nix diff --git a/pkgs/os-specific/linux/read-edid/default.nix b/pkgs/os-specific/linux/read-edid/default.nix new file mode 100644 index 00000000000..fdf2c4c9f12 --- /dev/null +++ b/pkgs/os-specific/linux/read-edid/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchurl, cmake, libx86 }: + +stdenv.mkDerivation rec { + name = "read-edid-${version}"; + version = "3.0.2"; + + src = fetchurl { + url = "http://www.polypux.org/projects/read-edid/${name}.tar.gz"; + sha256 = "0vqqmwsgh2gchw7qmpqk6idgzcm5rqf2fab84y7gk42v1x2diin7"; + }; + + buildInputs = [ cmake libx86 ]; + + patchPhase = '' + substituteInPlace CMakeLists.txt --replace 'COPYING' 'LICENSE' + ''; + + meta = with stdenv.lib; { + description = "Tool for reading and parsing EDID data from monitors"; + homepage = http://www.polypux.org/projects/read-edid/; + license = licenses.bsd2; # Quoted: "This is an unofficial license. Let's call it BSD-like." + maintainers = [ maintainers.dezgeg ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 62622cd8a0d..ce83ce492aa 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -2684,6 +2684,8 @@ let privateer = callPackage ../games/privateer { }; + read-edid = callPackage ../os-specific/linux/read-edid { }; + redmine = callPackage ../applications/version-management/redmine { }; rtmpdump = callPackage ../tools/video/rtmpdump { }; From 2c9b93b01c471a4d933ae05e36504c6f26d1f08b Mon Sep 17 00:00:00 2001 From: Tuomas Tynkkynen Date: Mon, 18 May 2015 01:43:13 +0300 Subject: [PATCH 24/90] i2c-tools: New package at version 3.1.1 --- pkgs/os-specific/linux/i2c-tools/default.nix | 31 ++++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 ++ 2 files changed, 33 insertions(+) create mode 100644 pkgs/os-specific/linux/i2c-tools/default.nix diff --git a/pkgs/os-specific/linux/i2c-tools/default.nix b/pkgs/os-specific/linux/i2c-tools/default.nix new file mode 100644 index 00000000000..5cac6069e72 --- /dev/null +++ b/pkgs/os-specific/linux/i2c-tools/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchurl, perl, read-edid }: + +stdenv.mkDerivation rec { + name = "i2c-tools-${version}"; + version = "3.1.1"; + + src = fetchurl { + url = "http://dl.lm-sensors.org/i2c-tools/releases/${name}.tar.bz2"; + sha256 = "000pvg995qy1b15ks59gd0klri55hb33kqpg5czy84hw1pbdgm0l"; + }; + + buildInputs = [ perl ]; + + patchPhase = '' + substituteInPlace eeprom/decode-edid --replace "/usr/sbin/parse-edid" "${read-edid}/bin/parse-edid" + substituteInPlace stub/i2c-stub-from-dump --replace "/sbin/" "" + ''; + + installPhase = '' + make install prefix=$out + rm -rf $out/include # Installs include/linux/i2c-dev.h that conflics with kernel headers + ''; + + meta = with stdenv.lib; { + description = "Set of I2C tools for Linux"; + homepage = http://www.lm-sensors.org/wiki/I2CTools; + license = licenses.gpl2; + maintainers = [ maintainers.dezgeg ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index ce83ce492aa..bcf02133be7 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -1792,6 +1792,8 @@ let hwinfo = callPackage ../tools/system/hwinfo { }; + i2c-tools = callPackage ../os-specific/linux/i2c-tools { }; + i2p = callPackage ../tools/networking/i2p {}; i2pd = callPackage ../tools/networking/i2pd {}; From a4925bcfa8ba5517dda7fa5369b2493f363936af Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Mon, 15 Jun 2015 18:07:18 +0200 Subject: [PATCH 25/90] Remove obsolete stuff --- lib/options.nix | 14 -------------- 1 file changed, 14 deletions(-) diff --git a/lib/options.nix b/lib/options.nix index eed43daaecc..a30397c7216 100644 --- a/lib/options.nix +++ b/lib/options.nix @@ -59,20 +59,6 @@ rec { else if all isInt list && all (x: x == head list) list then head list else throw "Cannot merge definitions of `${showOption loc}' given in ${showFiles (getFiles defs)}."; - /* Obsolete, will remove soon. Specify an option type or apply - function instead. */ - mergeTypedOption = typeName: predicate: merge: loc: list: - let list' = map (x: x.value) list; in - if all predicate list then merge list' - else throw "Expected a ${typeName}."; - - mergeEnableOption = mergeTypedOption "boolean" - (x: true == x || false == x) (fold lib.or false); - - mergeListOption = mergeTypedOption "list" isList concatLists; - - mergeStringOption = mergeTypedOption "string" isString lib.concatStrings; - mergeOneOption = loc: defs: if defs == [] then abort "This case should never happen." else if length defs != 1 then From e212e07cf6aac9d9e1c46db34b17fd16be2399c3 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Mon, 15 Jun 2015 18:04:27 +0200 Subject: [PATCH 26/90] Make types.bool complain on conflicting definitions Previously, conflicting definitions would merge to "true". Now they give an error, e.g. error: The option `hardware.enableAllFirmware' has conflicting definitions, in `/etc/nixos/configurations/misc/eelco/stuff.nix' and `/etc/nixos/configurations/misc/eelco/mandark.nix'. --- lib/options.nix | 9 +++++++++ lib/types.nix | 2 +- 2 files changed, 10 insertions(+), 1 deletion(-) diff --git a/lib/options.nix b/lib/options.nix index a30397c7216..bfc5b5fa2ae 100644 --- a/lib/options.nix +++ b/lib/options.nix @@ -65,6 +65,15 @@ rec { throw "The unique option `${showOption loc}' is defined multiple times, in ${showFiles (getFiles defs)}." else (head defs).value; + /* "Merge" option definitions by checking that they all have the same value. */ + mergeEqualOption = loc: defs: + if defs == [] then abort "This case should never happen." + else fold (def: val: + if def.value != val then + throw "The option `${showOption loc}' has conflicting definitions, in ${showFiles (getFiles defs)}." + else + val) (head defs).value defs; + getValues = map (x: x.value); getFiles = map (x: x.file); diff --git a/lib/types.nix b/lib/types.nix index f22c7661634..0a54a5598f1 100644 --- a/lib/types.nix +++ b/lib/types.nix @@ -54,7 +54,7 @@ rec { bool = mkOptionType { name = "boolean"; check = isBool; - merge = loc: fold (x: y: x.value || y) false; + merge = mergeEqualOption; }; int = mkOptionType { From 9366af1b94ed42b5e92a776b1ddc4ecd46e69ad1 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Mon, 15 Jun 2015 17:42:55 +0200 Subject: [PATCH 27/90] "types.uniq types.string" -> "types.str" --- nixos/modules/services/networking/atftpd.nix | 2 +- nixos/modules/services/x11/redshift.nix | 8 ++++---- nixos/modules/services/x11/unclutter.nix | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/nixos/modules/services/networking/atftpd.nix b/nixos/modules/services/networking/atftpd.nix index 47465ba948a..a9fd1e3ef8e 100644 --- a/nixos/modules/services/networking/atftpd.nix +++ b/nixos/modules/services/networking/atftpd.nix @@ -26,7 +26,7 @@ in root = mkOption { default = "/var/empty"; - type = types.uniq types.string; + type = types.str; description = '' Document root directory for the atftpd. ''; diff --git a/nixos/modules/services/x11/redshift.nix b/nixos/modules/services/x11/redshift.nix index d73b58de6c0..4ccb9153526 100644 --- a/nixos/modules/services/x11/redshift.nix +++ b/nixos/modules/services/x11/redshift.nix @@ -14,12 +14,12 @@ in { services.redshift.latitude = mkOption { description = "Your current latitude"; - type = types.uniq types.string; + type = types.str; }; services.redshift.longitude = mkOption { description = "Your current longitude"; - type = types.uniq types.string; + type = types.str; }; services.redshift.temperature = { @@ -39,12 +39,12 @@ in { day = mkOption { description = "Screen brightness to apply during the day (between 0.1 and 1.0)"; default = "1"; - type = types.uniq types.string; + type = types.str; }; night = mkOption { description = "Screen brightness to apply during the night (between 0.1 and 1.0)"; default = "1"; - type = types.uniq types.string; + type = types.str; }; }; }; diff --git a/nixos/modules/services/x11/unclutter.nix b/nixos/modules/services/x11/unclutter.nix index 556d9e187fd..6e8719e1053 100644 --- a/nixos/modules/services/x11/unclutter.nix +++ b/nixos/modules/services/x11/unclutter.nix @@ -13,7 +13,7 @@ in { services.unclutter.arguments = mkOption { description = "Arguments to pass to unclutter command"; default = "-idle 1"; - type = types.uniq types.string; + type = types.str; }; }; From c738b309eea83669bbd590f7293db5d725233193 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Mon, 15 Jun 2015 18:10:26 +0200 Subject: [PATCH 28/90] types.uniq types.bool -> types.bool --- lib/modules.nix | 2 +- nixos/modules/services/databases/influxdb.nix | 2 +- nixos/modules/services/databases/neo4j.nix | 2 +- nixos/modules/services/misc/apache-kafka.nix | 2 +- nixos/modules/services/misc/mesos-master.nix | 2 +- nixos/modules/services/misc/mesos-slave.nix | 2 +- nixos/modules/services/misc/zookeeper.nix | 2 +- nixos/modules/services/monitoring/apcupsd.nix | 2 +- nixos/modules/services/monitoring/graphite.nix | 14 +++++++------- nixos/modules/services/monitoring/statsd.nix | 2 +- .../modules/services/network-filesystems/samba.nix | 2 +- nixos/modules/services/networking/atftpd.nix | 2 +- nixos/modules/services/networking/freenet.nix | 2 +- nixos/modules/services/networking/iodined.nix | 4 ++-- nixos/modules/services/networking/kippo.nix | 2 +- nixos/modules/services/networking/notbit.nix | 8 ++++---- nixos/modules/services/networking/unifi.nix | 2 +- nixos/modules/services/scheduling/chronos.nix | 2 +- nixos/modules/services/scheduling/marathon.nix | 2 +- nixos/modules/services/search/elasticsearch.nix | 2 +- nixos/modules/services/torrent/peerflix.nix | 2 +- nixos/modules/services/torrent/transmission.nix | 2 +- .../modules/services/web-servers/lighttpd/cgit.nix | 2 +- .../services/web-servers/lighttpd/default.nix | 6 +++--- .../services/web-servers/lighttpd/gitweb.nix | 2 +- 25 files changed, 37 insertions(+), 37 deletions(-) diff --git a/lib/modules.nix b/lib/modules.nix index 3561dd0d1d3..73dbdd371f6 100644 --- a/lib/modules.nix +++ b/lib/modules.nix @@ -43,7 +43,7 @@ rec { }; _module.check = mkOption { - type = types.uniq types.bool; + type = types.bool; internal = true; default = check; description = "Whether to check whether all option definitions have matching declarations."; diff --git a/nixos/modules/services/databases/influxdb.nix b/nixos/modules/services/databases/influxdb.nix index b57ccebae16..08963f7aab7 100644 --- a/nixos/modules/services/databases/influxdb.nix +++ b/nixos/modules/services/databases/influxdb.nix @@ -55,7 +55,7 @@ in enable = mkOption { default = false; description = "Whether to enable the influxdb server"; - type = types.uniq types.bool; + type = types.bool; }; package = mkOption { diff --git a/nixos/modules/services/databases/neo4j.nix b/nixos/modules/services/databases/neo4j.nix index 575034c93ab..3cf22db7da2 100644 --- a/nixos/modules/services/databases/neo4j.nix +++ b/nixos/modules/services/databases/neo4j.nix @@ -43,7 +43,7 @@ in { enable = mkOption { description = "Whether to enable neo4j."; default = false; - type = types.uniq types.bool; + type = types.bool; }; package = mkOption { diff --git a/nixos/modules/services/misc/apache-kafka.nix b/nixos/modules/services/misc/apache-kafka.nix index 5314a096fe0..cbfeef7a9c7 100644 --- a/nixos/modules/services/misc/apache-kafka.nix +++ b/nixos/modules/services/misc/apache-kafka.nix @@ -33,7 +33,7 @@ in { enable = mkOption { description = "Whether to enable Apache Kafka."; default = false; - type = types.uniq types.bool; + type = types.bool; }; brokerId = mkOption { diff --git a/nixos/modules/services/misc/mesos-master.nix b/nixos/modules/services/misc/mesos-master.nix index 52f08c53b1d..6cbe94029d2 100644 --- a/nixos/modules/services/misc/mesos-master.nix +++ b/nixos/modules/services/misc/mesos-master.nix @@ -13,7 +13,7 @@ in { enable = mkOption { description = "Whether to enable the Mesos Master."; default = false; - type = types.uniq types.bool; + type = types.bool; }; port = mkOption { diff --git a/nixos/modules/services/misc/mesos-slave.nix b/nixos/modules/services/misc/mesos-slave.nix index 811aa812c8d..7a7fcf105ac 100644 --- a/nixos/modules/services/misc/mesos-slave.nix +++ b/nixos/modules/services/misc/mesos-slave.nix @@ -21,7 +21,7 @@ in { enable = mkOption { description = "Whether to enable the Mesos Slave."; default = false; - type = types.uniq types.bool; + type = types.bool; }; ip = mkOption { diff --git a/nixos/modules/services/misc/zookeeper.nix b/nixos/modules/services/misc/zookeeper.nix index 47675b8876c..827a050be11 100644 --- a/nixos/modules/services/misc/zookeeper.nix +++ b/nixos/modules/services/misc/zookeeper.nix @@ -27,7 +27,7 @@ in { enable = mkOption { description = "Whether to enable Zookeeper."; default = false; - type = types.uniq types.bool; + type = types.bool; }; port = mkOption { diff --git a/nixos/modules/services/monitoring/apcupsd.nix b/nixos/modules/services/monitoring/apcupsd.nix index 6cd0254dbe3..9abd6e9ab64 100644 --- a/nixos/modules/services/monitoring/apcupsd.nix +++ b/nixos/modules/services/monitoring/apcupsd.nix @@ -74,7 +74,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Whether to enable the APC UPS daemon. apcupsd monitors your UPS and permits orderly shutdown of your computer in the event of a power diff --git a/nixos/modules/services/monitoring/graphite.nix b/nixos/modules/services/monitoring/graphite.nix index 2a572a6a065..fb30daba1dc 100644 --- a/nixos/modules/services/monitoring/graphite.nix +++ b/nixos/modules/services/monitoring/graphite.nix @@ -67,7 +67,7 @@ in { enable = mkOption { description = "Whether to enable graphite web frontend."; default = false; - type = types.uniq types.bool; + type = types.bool; }; host = mkOption { @@ -95,7 +95,7 @@ in { ''; default = false; - type = types.uniq types.bool; + type = types.bool; }; finders = mkOption { @@ -177,7 +177,7 @@ in { enableCache = mkOption { description = "Whether to enable carbon cache, the graphite storage daemon."; default = false; - type = types.uniq types.bool; + type = types.bool; }; storageAggregation = mkOption { @@ -234,7 +234,7 @@ in { enableRelay = mkOption { description = "Whether to enable carbon relay, the carbon replication and sharding service."; default = false; - type = types.uniq types.bool; + type = types.bool; }; relayRules = mkOption { @@ -251,7 +251,7 @@ in { enableAggregator = mkOption { description = "Whether to enable carbon agregator, the carbon buffering service."; default = false; - type = types.uniq types.bool; + type = types.bool; }; aggregationRules = mkOption { @@ -269,7 +269,7 @@ in { enable = mkOption { description = "Whether to enable seyren service."; default = false; - type = types.uniq types.bool; + type = types.bool; }; port = mkOption { @@ -319,7 +319,7 @@ in { ''; default = false; - type = types.uniq types.bool; + type = types.bool; }; redisUrl = mkOption { diff --git a/nixos/modules/services/monitoring/statsd.nix b/nixos/modules/services/monitoring/statsd.nix index 7d7ca27bb2f..10ce5a4ce4c 100644 --- a/nixos/modules/services/monitoring/statsd.nix +++ b/nixos/modules/services/monitoring/statsd.nix @@ -37,7 +37,7 @@ in enable = mkOption { description = "Whether to enable statsd stats aggregation service"; default = false; - type = types.uniq types.bool; + type = types.bool; }; host = mkOption { diff --git a/nixos/modules/services/network-filesystems/samba.nix b/nixos/modules/services/network-filesystems/samba.nix index 8b3741bca0a..bbf21634c36 100644 --- a/nixos/modules/services/network-filesystems/samba.nix +++ b/nixos/modules/services/network-filesystems/samba.nix @@ -137,7 +137,7 @@ in nsswins = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Whether to enable the WINS NSS (Name Service Switch) plug-in. Enabling it allows applications to resolve WINS/NetBIOS names (a.k.a. diff --git a/nixos/modules/services/networking/atftpd.nix b/nixos/modules/services/networking/atftpd.nix index a9fd1e3ef8e..d875ddc6352 100644 --- a/nixos/modules/services/networking/atftpd.nix +++ b/nixos/modules/services/networking/atftpd.nix @@ -18,7 +18,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Whenever to enable the atftpd TFTP server. ''; diff --git a/nixos/modules/services/networking/freenet.nix b/nixos/modules/services/networking/freenet.nix index e9cacf4a16e..b069526c768 100644 --- a/nixos/modules/services/networking/freenet.nix +++ b/nixos/modules/services/networking/freenet.nix @@ -20,7 +20,7 @@ in services.freenet = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "Enable the Freenet daemon"; }; diff --git a/nixos/modules/services/networking/iodined.nix b/nixos/modules/services/networking/iodined.nix index bc0fbb42c99..6bfe62e6261 100644 --- a/nixos/modules/services/networking/iodined.nix +++ b/nixos/modules/services/networking/iodined.nix @@ -20,13 +20,13 @@ in services.iodined = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "Enable iodine, ip over dns daemon"; }; client = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "Start iodine in client mode"; }; diff --git a/nixos/modules/services/networking/kippo.nix b/nixos/modules/services/networking/kippo.nix index d2045c9efc5..3412d02862b 100644 --- a/nixos/modules/services/networking/kippo.nix +++ b/nixos/modules/services/networking/kippo.nix @@ -16,7 +16,7 @@ rec { services.kippo = { enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = ''Enable the kippo honeypot ssh server.''; }; port = mkOption { diff --git a/nixos/modules/services/networking/notbit.nix b/nixos/modules/services/networking/notbit.nix index 2e1412ff7c8..8aaccebccde 100644 --- a/nixos/modules/services/networking/notbit.nix +++ b/nixos/modules/services/networking/notbit.nix @@ -31,7 +31,7 @@ with lib; services.notbit = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = '' Enables the notbit daemon and provides a sendmail binary named `notbit-system-sendmail` for sending mail over the system instance of notbit. Users must be in the notbit group in order to send mail over the system notbit instance. Currently mail recipt is not supported. @@ -65,19 +65,19 @@ with lib; }; specifiedPeersOnly = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "If true, notbit will only connect to peers specified by the peers option."; }; allowPrivateAddresses = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "If true, notbit will allow connections to to RFC 1918 addresses."; }; noBootstrap = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "If true, notbit will not bootstrap an initial peerlist from bitmessage.org servers"; }; diff --git a/nixos/modules/services/networking/unifi.nix b/nixos/modules/services/networking/unifi.nix index d6c8e0dc7a5..fd9e58f24a4 100644 --- a/nixos/modules/services/networking/unifi.nix +++ b/nixos/modules/services/networking/unifi.nix @@ -25,7 +25,7 @@ in options = { services.unifi.enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = '' Whether or not to enable the unifi controller service. diff --git a/nixos/modules/services/scheduling/chronos.nix b/nixos/modules/services/scheduling/chronos.nix index f36b886a744..db1f0f5f00c 100644 --- a/nixos/modules/services/scheduling/chronos.nix +++ b/nixos/modules/services/scheduling/chronos.nix @@ -13,7 +13,7 @@ in { enable = mkOption { description = "Whether to enable graphite web frontend."; default = false; - type = types.uniq types.bool; + type = types.bool; }; httpPort = mkOption { diff --git a/nixos/modules/services/scheduling/marathon.nix b/nixos/modules/services/scheduling/marathon.nix index b9f4a808b0c..4e837c62dc1 100644 --- a/nixos/modules/services/scheduling/marathon.nix +++ b/nixos/modules/services/scheduling/marathon.nix @@ -12,7 +12,7 @@ in { options.services.marathon = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = '' Whether to enable the marathon mesos framework. diff --git a/nixos/modules/services/search/elasticsearch.nix b/nixos/modules/services/search/elasticsearch.nix index 12f163db463..f6a3fad6c5d 100644 --- a/nixos/modules/services/search/elasticsearch.nix +++ b/nixos/modules/services/search/elasticsearch.nix @@ -34,7 +34,7 @@ in { enable = mkOption { description = "Whether to enable elasticsearch."; default = false; - type = types.uniq types.bool; + type = types.bool; }; host = mkOption { diff --git a/nixos/modules/services/torrent/peerflix.nix b/nixos/modules/services/torrent/peerflix.nix index 0360deac08b..38fbd3b226c 100644 --- a/nixos/modules/services/torrent/peerflix.nix +++ b/nixos/modules/services/torrent/peerflix.nix @@ -20,7 +20,7 @@ in { enable = mkOption { description = "Whether to enable peerflix service."; default = false; - type = types.uniq types.bool; + type = types.bool; }; stateDir = mkOption { diff --git a/nixos/modules/services/torrent/transmission.nix b/nixos/modules/services/torrent/transmission.nix index 135113b3ceb..44cd6216f5c 100644 --- a/nixos/modules/services/torrent/transmission.nix +++ b/nixos/modules/services/torrent/transmission.nix @@ -27,7 +27,7 @@ in options = { services.transmission = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = '' Whether or not to enable the headless Transmission BitTorrent daemon. diff --git a/nixos/modules/services/web-servers/lighttpd/cgit.nix b/nixos/modules/services/web-servers/lighttpd/cgit.nix index 34b2fa600ad..c8590e6a54e 100644 --- a/nixos/modules/services/web-servers/lighttpd/cgit.nix +++ b/nixos/modules/services/web-servers/lighttpd/cgit.nix @@ -15,7 +15,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' If true, enable cgit (fast web interface for git repositories) as a sub-service in lighttpd. cgit will be accessible at diff --git a/nixos/modules/services/web-servers/lighttpd/default.nix b/nixos/modules/services/web-servers/lighttpd/default.nix index 06f310eeb93..490df268e8f 100644 --- a/nixos/modules/services/web-servers/lighttpd/default.nix +++ b/nixos/modules/services/web-servers/lighttpd/default.nix @@ -122,7 +122,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Enable the lighttpd web server. ''; @@ -146,7 +146,7 @@ in mod_userdir = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' If true, requests in the form /~user/page.html are rewritten to take the file public_html/page.html from the home directory of the user. @@ -168,7 +168,7 @@ in mod_status = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Show server status overview at /server-status, statistics at /server-statistics and list of loaded modules at /server-config. diff --git a/nixos/modules/services/web-servers/lighttpd/gitweb.nix b/nixos/modules/services/web-servers/lighttpd/gitweb.nix index ef7072ecba3..f12cc973446 100644 --- a/nixos/modules/services/web-servers/lighttpd/gitweb.nix +++ b/nixos/modules/services/web-servers/lighttpd/gitweb.nix @@ -17,7 +17,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' If true, enable gitweb in lighttpd. Access it at http://yourserver/gitweb ''; From 19ffa212af8763e84e09e1e56fba99e1d7124d84 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Mon, 15 Jun 2015 18:11:32 +0200 Subject: [PATCH 29/90] types.uniq types.int -> types.int types.int already implies uniqueness. --- nixos/modules/services/backup/almir.nix | 2 +- nixos/modules/services/backup/bacula.nix | 6 +++--- .../services/continuous-integration/jenkins/default.nix | 2 +- nixos/modules/services/misc/gpsd.nix | 4 ++-- nixos/modules/services/monitoring/statsd.nix | 4 ++-- nixos/modules/services/monitoring/ups.nix | 4 ++-- nixos/modules/services/networking/freenet.nix | 2 +- nixos/modules/services/networking/kippo.nix | 2 +- nixos/modules/services/networking/notbit.nix | 4 ++-- nixos/modules/services/networking/ntopng.nix | 2 +- nixos/modules/services/torrent/transmission.nix | 2 +- nixos/modules/services/web-servers/lighttpd/default.nix | 2 +- nixos/modules/services/x11/redshift.nix | 4 ++-- nixos/modules/system/boot/systemd.nix | 2 +- 14 files changed, 21 insertions(+), 21 deletions(-) diff --git a/nixos/modules/services/backup/almir.nix b/nixos/modules/services/backup/almir.nix index ec39a997028..fbb4ff4034f 100644 --- a/nixos/modules/services/backup/almir.nix +++ b/nixos/modules/services/backup/almir.nix @@ -95,7 +95,7 @@ in { port = mkOption { default = 35000; - type = types.uniq types.int; + type = types.int; description = '' Port for Almir web server to listen on. ''; diff --git a/nixos/modules/services/backup/bacula.nix b/nixos/modules/services/backup/bacula.nix index c2255f68818..9e3ae66f808 100644 --- a/nixos/modules/services/backup/bacula.nix +++ b/nixos/modules/services/backup/bacula.nix @@ -182,7 +182,7 @@ in { port = mkOption { default = 9102; - type = types.uniq types.int; + type = types.int; description = '' This specifies the port number on which the Client listens for Director connections. It must agree with the FDPort specified in the Client resource of the Director's configuration file. The default is 9102. ''; @@ -237,7 +237,7 @@ in { port = mkOption { default = 9103; - type = types.uniq types.int; + type = types.int; description = '' Specifies port number on which the Storage daemon listens for Director connections. The default is 9103. ''; @@ -302,7 +302,7 @@ in { port = mkOption { default = 9101; - type = types.uniq types.int; + type = types.int; description = '' Specify the port (a positive integer) on which the Director daemon will listen for Bacula Console connections. This same port number must be specified in the Director resource of the Console configuration file. The default is 9101, so normally this directive need not be specified. This directive should not be used if you specify DirAddresses (N.B plural) directive. ''; diff --git a/nixos/modules/services/continuous-integration/jenkins/default.nix b/nixos/modules/services/continuous-integration/jenkins/default.nix index 29a81f066ab..ccea85faa3e 100644 --- a/nixos/modules/services/continuous-integration/jenkins/default.nix +++ b/nixos/modules/services/continuous-integration/jenkins/default.nix @@ -50,7 +50,7 @@ in { port = mkOption { default = 8080; - type = types.uniq types.int; + type = types.int; description = '' Specifies port number on which the jenkins HTTP interface listens. The default is 8080. ''; diff --git a/nixos/modules/services/misc/gpsd.nix b/nixos/modules/services/misc/gpsd.nix index 4a677f33fa0..a4a4c7b5d93 100644 --- a/nixos/modules/services/misc/gpsd.nix +++ b/nixos/modules/services/misc/gpsd.nix @@ -54,7 +54,7 @@ in }; port = mkOption { - type = types.uniq types.int; + type = types.int; default = 2947; description = '' The port where to listen for TCP connections. @@ -62,7 +62,7 @@ in }; debugLevel = mkOption { - type = types.uniq types.int; + type = types.int; default = 0; description = '' The debugging level. diff --git a/nixos/modules/services/monitoring/statsd.nix b/nixos/modules/services/monitoring/statsd.nix index 10ce5a4ce4c..d9e0b83e238 100644 --- a/nixos/modules/services/monitoring/statsd.nix +++ b/nixos/modules/services/monitoring/statsd.nix @@ -49,7 +49,7 @@ in port = mkOption { description = "Port that stats listens for messages on over UDP"; default = 8125; - type = types.uniq types.int; + type = types.int; }; mgmt_address = mkOption { @@ -61,7 +61,7 @@ in mgmt_port = mkOption { description = "Port to run the management TCP interface on"; default = 8126; - type = types.uniq types.int; + type = types.int; }; backends = mkOption { diff --git a/nixos/modules/services/monitoring/ups.nix b/nixos/modules/services/monitoring/ups.nix index cc9026f768a..98817f22f5d 100644 --- a/nixos/modules/services/monitoring/ups.nix +++ b/nixos/modules/services/monitoring/ups.nix @@ -32,7 +32,7 @@ let shutdownOrder = mkOption { default = 0; - type = types.uniq types.int; + type = types.int; description = '' When you have multiple UPSes on your system, you usually need to turn them off in a certain order. upsdrvctl shuts down all the @@ -151,7 +151,7 @@ in maxStartDelay = mkOption { default = 45; - type = types.uniq types.int; + type = types.int; description = '' This can be set as a global variable above your first UPS definition and it can also be set in a UPS section. This value diff --git a/nixos/modules/services/networking/freenet.nix b/nixos/modules/services/networking/freenet.nix index b069526c768..3903a2c708c 100644 --- a/nixos/modules/services/networking/freenet.nix +++ b/nixos/modules/services/networking/freenet.nix @@ -26,7 +26,7 @@ in }; nice = mkOption { - type = types.uniq types.int; + type = types.int; default = 10; description = "Set the nice level for the Freenet daemon"; }; diff --git a/nixos/modules/services/networking/kippo.nix b/nixos/modules/services/networking/kippo.nix index 3412d02862b..68f26eefe27 100644 --- a/nixos/modules/services/networking/kippo.nix +++ b/nixos/modules/services/networking/kippo.nix @@ -21,7 +21,7 @@ rec { }; port = mkOption { default = 2222; - type = types.uniq types.int; + type = types.int; description = ''TCP port number for kippo to bind to.''; }; hostname = mkOption { diff --git a/nixos/modules/services/networking/notbit.nix b/nixos/modules/services/networking/notbit.nix index 8aaccebccde..a96e181cb80 100644 --- a/nixos/modules/services/networking/notbit.nix +++ b/nixos/modules/services/networking/notbit.nix @@ -39,13 +39,13 @@ with lib; }; port = mkOption { - type = types.uniq types.int; + type = types.int; default = 8444; description = "The port which the daemon listens for other bitmessage clients"; }; nice = mkOption { - type = types.uniq types.int; + type = types.int; default = 10; description = "Set the nice level for the notbit daemon"; }; diff --git a/nixos/modules/services/networking/ntopng.nix b/nixos/modules/services/networking/ntopng.nix index ab86f1a5b2b..c1525711713 100644 --- a/nixos/modules/services/networking/ntopng.nix +++ b/nixos/modules/services/networking/ntopng.nix @@ -57,7 +57,7 @@ in http-port = mkOption { default = 3000; - type = types.uniq types.int; + type = types.int; description = '' Sets the HTTP port of the embedded web server. ''; diff --git a/nixos/modules/services/torrent/transmission.nix b/nixos/modules/services/torrent/transmission.nix index 44cd6216f5c..cf548bc696c 100644 --- a/nixos/modules/services/torrent/transmission.nix +++ b/nixos/modules/services/torrent/transmission.nix @@ -66,7 +66,7 @@ in }; port = mkOption { - type = types.uniq types.int; + type = types.int; default = 9091; description = "TCP port number to run the RPC/web interface."; }; diff --git a/nixos/modules/services/web-servers/lighttpd/default.nix b/nixos/modules/services/web-servers/lighttpd/default.nix index 490df268e8f..2c662c0aead 100644 --- a/nixos/modules/services/web-servers/lighttpd/default.nix +++ b/nixos/modules/services/web-servers/lighttpd/default.nix @@ -130,7 +130,7 @@ in port = mkOption { default = 80; - type = types.uniq types.int; + type = types.int; description = '' TCP port number for lighttpd to bind to. ''; diff --git a/nixos/modules/services/x11/redshift.nix b/nixos/modules/services/x11/redshift.nix index 4ccb9153526..99d19f6ab15 100644 --- a/nixos/modules/services/x11/redshift.nix +++ b/nixos/modules/services/x11/redshift.nix @@ -26,12 +26,12 @@ in { day = mkOption { description = "Colour temperature to use during day time"; default = 5500; - type = types.uniq types.int; + type = types.int; }; night = mkOption { description = "Colour temperature to use during night time"; default = 3700; - type = types.uniq types.int; + type = types.int; }; }; diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index 1fde720bba0..2ad12c51b21 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -491,7 +491,7 @@ in services.journald.rateLimitBurst = mkOption { default = 100; - type = types.uniq types.int; + type = types.int; description = '' Configures the rate limiting burst limit (number of messages per interval) that is applied to all messages generated on the system. From c63bc92d4c040fb7999185e1948b29c3c84bacf9 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Mon, 15 Jun 2015 18:12:32 +0200 Subject: [PATCH 30/90] types.uniq types.str -> types.str --- nixos/modules/hardware/video/bumblebee.nix | 2 +- nixos/modules/misc/nixpkgs.nix | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nixos/modules/hardware/video/bumblebee.nix b/nixos/modules/hardware/video/bumblebee.nix index e20ebc3041e..e341eac4a81 100644 --- a/nixos/modules/hardware/video/bumblebee.nix +++ b/nixos/modules/hardware/video/bumblebee.nix @@ -26,7 +26,7 @@ in hardware.bumblebee.group = mkOption { default = "wheel"; example = "video"; - type = types.uniq types.str; + type = types.str; description = ''Group for bumblebee socket''; }; hardware.bumblebee.connectDisplay = mkOption { diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix index 114feb2562d..fb5516c953c 100644 --- a/nixos/modules/misc/nixpkgs.nix +++ b/nixos/modules/misc/nixpkgs.nix @@ -59,7 +59,7 @@ in }; nixpkgs.system = mkOption { - type = types.uniq types.str; + type = types.str; example = "i686-linux"; description = '' Specifies the Nix platform type for which NixOS should be built. From 6e6a96d42cf56cfcd042bbeab89e37f442f0cfcc Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Mon, 15 Jun 2015 18:18:46 +0200 Subject: [PATCH 31/90] Some more type cleanup --- nixos/modules/config/shells-environment.nix | 2 +- nixos/modules/misc/assertions.nix | 2 +- nixos/modules/programs/ssh.nix | 4 ++-- nixos/modules/security/ca.nix | 2 +- nixos/modules/services/logging/logcheck.nix | 2 +- nixos/modules/services/logging/rsyslogd.nix | 2 +- nixos/modules/services/logging/syslogd.nix | 2 +- nixos/modules/services/mail/opensmtpd.nix | 2 +- nixos/modules/services/misc/apache-kafka.nix | 2 +- nixos/modules/services/misc/mesos-master.nix | 2 +- nixos/modules/services/misc/mesos-slave.nix | 2 +- nixos/modules/services/misc/zookeeper.nix | 2 +- nixos/modules/services/monitoring/ups.nix | 2 +- nixos/modules/services/networking/dnsmasq.nix | 2 +- nixos/modules/services/networking/firewall.nix | 4 ++-- nixos/modules/services/networking/minidlna.nix | 2 +- nixos/modules/services/networking/networkmanager.nix | 4 ++-- nixos/modules/services/networking/polipo.nix | 2 +- nixos/modules/services/networking/ssh/sshd.nix | 2 +- nixos/modules/services/networking/wpa_supplicant.nix | 2 +- nixos/modules/services/networking/znc.nix | 4 ++-- nixos/modules/services/search/elasticsearch.nix | 2 +- nixos/modules/system/boot/luksroot.nix | 2 +- nixos/modules/system/boot/stage-1.nix | 2 +- nixos/modules/system/boot/systemd-unit-options.nix | 4 ++-- nixos/modules/tasks/filesystems.nix | 2 +- nixos/modules/tasks/kbd.nix | 2 +- nixos/modules/tasks/network-interfaces.nix | 2 +- 28 files changed, 33 insertions(+), 33 deletions(-) diff --git a/nixos/modules/config/shells-environment.nix b/nixos/modules/config/shells-environment.nix index e5b342afcc4..bff0b299132 100644 --- a/nixos/modules/config/shells-environment.nix +++ b/nixos/modules/config/shells-environment.nix @@ -63,7 +63,7 @@ in description = '' A list of profiles used to setup the global environment. ''; - type = types.listOf types.string; + type = types.listOf types.str; }; environment.profileRelativeEnvVars = mkOption { diff --git a/nixos/modules/misc/assertions.nix b/nixos/modules/misc/assertions.nix index c1be36e98cb..c42de038e61 100644 --- a/nixos/modules/misc/assertions.nix +++ b/nixos/modules/misc/assertions.nix @@ -21,7 +21,7 @@ with lib; warnings = mkOption { internal = true; default = []; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "The `foo' service is deprecated and will go away soon!" ]; description = '' This option allows modules to show warnings to users during diff --git a/nixos/modules/programs/ssh.nix b/nixos/modules/programs/ssh.nix index 6ca73eea5f6..0d1ec500afc 100644 --- a/nixos/modules/programs/ssh.nix +++ b/nixos/modules/programs/ssh.nix @@ -27,7 +27,7 @@ in programs.ssh = { askPassword = mkOption { - type = types.string; + type = types.str; default = "${pkgs.x11_ssh_askpass}/libexec/x11-ssh-askpass"; description = ''Program used by SSH to ask for passwords.''; }; @@ -77,7 +77,7 @@ in }; agentTimeout = mkOption { - type = types.nullOr types.string; + type = types.nullOr types.str; default = null; example = "1h"; description = '' diff --git a/nixos/modules/security/ca.nix b/nixos/modules/security/ca.nix index 31caab97a65..88f53eab9b4 100644 --- a/nixos/modules/security/ca.nix +++ b/nixos/modules/security/ca.nix @@ -33,7 +33,7 @@ in }; security.pki.certificates = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = singleton '' NixOS.org diff --git a/nixos/modules/services/logging/logcheck.nix b/nixos/modules/services/logging/logcheck.nix index 1cd032ffa76..6069262b470 100644 --- a/nixos/modules/services/logging/logcheck.nix +++ b/nixos/modules/services/logging/logcheck.nix @@ -192,7 +192,7 @@ in extraGroups = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "postdrop" "mongodb" ]; description = '' Extra groups for the logcheck user, for example to be able to use sendmail, diff --git a/nixos/modules/services/logging/rsyslogd.nix b/nixos/modules/services/logging/rsyslogd.nix index d4b7aa809f0..1ea96b8f132 100644 --- a/nixos/modules/services/logging/rsyslogd.nix +++ b/nixos/modules/services/logging/rsyslogd.nix @@ -66,7 +66,7 @@ in }; extraParams = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ ]; example = [ "-m 0" ]; description = '' diff --git a/nixos/modules/services/logging/syslogd.nix b/nixos/modules/services/logging/syslogd.nix index 325868079e2..a0f8e89fa69 100644 --- a/nixos/modules/services/logging/syslogd.nix +++ b/nixos/modules/services/logging/syslogd.nix @@ -83,7 +83,7 @@ in }; extraParams = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ ]; example = [ "-m 0" ]; description = '' diff --git a/nixos/modules/services/mail/opensmtpd.nix b/nixos/modules/services/mail/opensmtpd.nix index fbc4b1d7d8a..a3e50b42292 100644 --- a/nixos/modules/services/mail/opensmtpd.nix +++ b/nixos/modules/services/mail/opensmtpd.nix @@ -24,7 +24,7 @@ in { }; extraServerArgs = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = [ "-v" "-P mta" ]; description = '' diff --git a/nixos/modules/services/misc/apache-kafka.nix b/nixos/modules/services/misc/apache-kafka.nix index cbfeef7a9c7..f6198e03bae 100644 --- a/nixos/modules/services/misc/apache-kafka.nix +++ b/nixos/modules/services/misc/apache-kafka.nix @@ -108,7 +108,7 @@ in { "-Djava.awt.headless=true" "-Djava.net.preferIPv4Stack=true" ]; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "-Djava.net.preferIPv4Stack=true" "-Dcom.sun.management.jmxremote" diff --git a/nixos/modules/services/misc/mesos-master.nix b/nixos/modules/services/misc/mesos-master.nix index 6cbe94029d2..497646b2b41 100644 --- a/nixos/modules/services/misc/mesos-master.nix +++ b/nixos/modules/services/misc/mesos-master.nix @@ -45,7 +45,7 @@ in { See https://mesos.apache.org/documentation/latest/configuration/ ''; default = [ "" ]; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "--credentials=VALUE" ]; }; diff --git a/nixos/modules/services/misc/mesos-slave.nix b/nixos/modules/services/misc/mesos-slave.nix index 7a7fcf105ac..8c29734813a 100644 --- a/nixos/modules/services/misc/mesos-slave.nix +++ b/nixos/modules/services/misc/mesos-slave.nix @@ -70,7 +70,7 @@ in { See https://mesos.apache.org/documentation/latest/configuration/ ''; default = [ "" ]; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "--gc_delay=3days" ]; }; diff --git a/nixos/modules/services/misc/zookeeper.nix b/nixos/modules/services/misc/zookeeper.nix index 827a050be11..4ce692b6f6a 100644 --- a/nixos/modules/services/misc/zookeeper.nix +++ b/nixos/modules/services/misc/zookeeper.nix @@ -94,7 +94,7 @@ in { extraCmdLineOptions = mkOption { description = "Extra command line options for the Zookeeper launcher."; default = [ "-Dcom.sun.management.jmxremote" "-Dcom.sun.management.jmxremote.local.only=true" ]; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "-Djava.net.preferIPv4Stack=true" "-Dcom.sun.management.jmxremote" "-Dcom.sun.management.jmxremote.local.only=true" ]; }; diff --git a/nixos/modules/services/monitoring/ups.nix b/nixos/modules/services/monitoring/ups.nix index 98817f22f5d..eb478f7da65 100644 --- a/nixos/modules/services/monitoring/ups.nix +++ b/nixos/modules/services/monitoring/ups.nix @@ -63,7 +63,7 @@ let directives = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; description = '' List of configuration directives for this UPS. ''; diff --git a/nixos/modules/services/networking/dnsmasq.nix b/nixos/modules/services/networking/dnsmasq.nix index 18086154b6b..4a812167bb5 100644 --- a/nixos/modules/services/networking/dnsmasq.nix +++ b/nixos/modules/services/networking/dnsmasq.nix @@ -45,7 +45,7 @@ in }; servers = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = [ "8.8.8.8" "8.8.4.4" ]; description = '' diff --git a/nixos/modules/services/networking/firewall.nix b/nixos/modules/services/networking/firewall.nix index b05a640e11f..40681f5b957 100644 --- a/nixos/modules/services/networking/firewall.nix +++ b/nixos/modules/services/networking/firewall.nix @@ -287,7 +287,7 @@ in }; networking.firewall.trustedInterfaces = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; description = '' Traffic coming in from these interfaces will be accepted @@ -379,7 +379,7 @@ in networking.firewall.connectionTrackingModules = mkOption { default = [ "ftp" ]; example = [ "ftp" "irc" "sane" "sip" "tftp" "amanda" "h323" "netbios_sn" "pptp" "snmp" ]; - type = types.listOf types.string; + type = types.listOf types.str; description = '' List of connection-tracking helpers that are auto-loaded. diff --git a/nixos/modules/services/networking/minidlna.nix b/nixos/modules/services/networking/minidlna.nix index 989ee4d91af..51850496e2c 100644 --- a/nixos/modules/services/networking/minidlna.nix +++ b/nixos/modules/services/networking/minidlna.nix @@ -30,7 +30,7 @@ in }; services.minidlna.mediaDirs = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = [ "/data/media" "V,/home/alice/video" ]; description = diff --git a/nixos/modules/services/networking/networkmanager.nix b/nixos/modules/services/networking/networkmanager.nix index 60f380f024b..adbc6099c95 100644 --- a/nixos/modules/services/networking/networkmanager.nix +++ b/nixos/modules/services/networking/networkmanager.nix @@ -118,7 +118,7 @@ in { }; appendNameservers = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; description = '' A list of name servers that should be appended @@ -127,7 +127,7 @@ in { }; insertNameservers = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; description = '' A list of name servers that should be inserted before diff --git a/nixos/modules/services/networking/polipo.nix b/nixos/modules/services/networking/polipo.nix index 51179d9120f..847fc88ead4 100644 --- a/nixos/modules/services/networking/polipo.nix +++ b/nixos/modules/services/networking/polipo.nix @@ -42,7 +42,7 @@ in }; allowedClients = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ "127.0.0.1" "::1" ]; example = [ "127.0.0.1" "::1" "134.157.168.0/24" "2001:660:116::/48" ]; description = '' diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix index 14d516ddbb6..bc89ea2d3cd 100644 --- a/nixos/modules/services/networking/ssh/sshd.nix +++ b/nixos/modules/services/networking/ssh/sshd.nix @@ -234,7 +234,7 @@ in ]; options = { hostNames = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; description = '' A list of host names and/or IP numbers used for accessing diff --git a/nixos/modules/services/networking/wpa_supplicant.nix b/nixos/modules/services/networking/wpa_supplicant.nix index e2d34ea079c..9e04bd40190 100644 --- a/nixos/modules/services/networking/wpa_supplicant.nix +++ b/nixos/modules/services/networking/wpa_supplicant.nix @@ -43,7 +43,7 @@ in }; interfaces = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = [ "wlan0" "wlan1" ]; description = '' diff --git a/nixos/modules/services/networking/znc.nix b/nixos/modules/services/networking/znc.nix index b39aea04521..196a14dd40e 100644 --- a/nixos/modules/services/networking/znc.nix +++ b/nixos/modules/services/networking/znc.nix @@ -144,7 +144,7 @@ in */ confOptions = { modules = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ "partyline" "webadmin" "adminlog" "log" ]; example = [ "partyline" "webadmin" "adminlog" "log" ]; description = '' @@ -153,7 +153,7 @@ in }; userModules = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ ]; example = [ "fish" "push" ]; description = '' diff --git a/nixos/modules/services/search/elasticsearch.nix b/nixos/modules/services/search/elasticsearch.nix index f6a3fad6c5d..64620bf1604 100644 --- a/nixos/modules/services/search/elasticsearch.nix +++ b/nixos/modules/services/search/elasticsearch.nix @@ -102,7 +102,7 @@ in { extraCmdLineOptions = mkOption { description = "Extra command line options for the elasticsearch launcher."; default = []; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "-Djava.net.preferIPv4Stack=true" ]; }; diff --git a/nixos/modules/system/boot/luksroot.nix b/nixos/modules/system/boot/luksroot.nix index 03070bef483..3799e5d7ddb 100644 --- a/nixos/modules/system/boot/luksroot.nix +++ b/nixos/modules/system/boot/luksroot.nix @@ -211,7 +211,7 @@ in }; boot.initrd.luks.cryptoModules = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ "aes" "aes_generic" "blowfish" "twofish" "serpent" "cbc" "xts" "lrw" "sha1" "sha256" "sha512" diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix index 8b58eccdcec..893861a2eed 100644 --- a/nixos/modules/system/boot/stage-1.nix +++ b/nixos/modules/system/boot/stage-1.nix @@ -358,7 +358,7 @@ in boot.initrd.supportedFilesystems = mkOption { default = [ ]; example = [ "btrfs" ]; - type = types.listOf types.string; + type = types.listOf types.str; description = "Names of supported filesystem types in the initial ramdisk."; }; diff --git a/nixos/modules/system/boot/systemd-unit-options.nix b/nixos/modules/system/boot/systemd-unit-options.nix index 57831a5e6ef..a7a334dec28 100644 --- a/nixos/modules/system/boot/systemd-unit-options.nix +++ b/nixos/modules/system/boot/systemd-unit-options.nix @@ -42,13 +42,13 @@ in rec { requiredBy = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; description = "Units that require (i.e. depend on and need to go down with) this unit."; }; wantedBy = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; description = "Units that want (i.e. depend on) this unit."; }; diff --git a/nixos/modules/tasks/filesystems.nix b/nixos/modules/tasks/filesystems.nix index ce8d6079faa..ce21d9fe762 100644 --- a/nixos/modules/tasks/filesystems.nix +++ b/nixos/modules/tasks/filesystems.nix @@ -121,7 +121,7 @@ in boot.supportedFilesystems = mkOption { default = [ ]; example = [ "btrfs" ]; - type = types.listOf types.string; + type = types.listOf types.str; description = "Names of supported filesystem types."; }; diff --git a/nixos/modules/tasks/kbd.nix b/nixos/modules/tasks/kbd.nix index 8d26998021d..69f004888f5 100644 --- a/nixos/modules/tasks/kbd.nix +++ b/nixos/modules/tasks/kbd.nix @@ -22,7 +22,7 @@ in # FIXME: still needed? boot.extraTTYs = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; example = ["tty8" "tty9"]; description = '' Tty (virtual console) devices, in addition to the consoles on diff --git a/nixos/modules/tasks/network-interfaces.nix b/nixos/modules/tasks/network-interfaces.nix index 71a721abba2..6361ed2cc43 100644 --- a/nixos/modules/tasks/network-interfaces.nix +++ b/nixos/modules/tasks/network-interfaces.nix @@ -392,7 +392,7 @@ in interfaces = mkOption { example = [ "eth0" "eth1" ]; - type = types.listOf types.string; + type = types.listOf types.str; description = "The physical network interfaces connected by the bridge."; }; From d3212beff9b4ff076d67e9334a83a967ab2baf6c Mon Sep 17 00:00:00 2001 From: Casey Ransom Date: Wed, 3 Jun 2015 20:21:12 +0000 Subject: [PATCH 32/90] Allow custom tags to be set for datadog monitoring --- nixos/modules/services/monitoring/dd-agent.nix | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/nixos/modules/services/monitoring/dd-agent.nix b/nixos/modules/services/monitoring/dd-agent.nix index dc51a7c7486..3e90393a662 100644 --- a/nixos/modules/services/monitoring/dd-agent.nix +++ b/nixos/modules/services/monitoring/dd-agent.nix @@ -23,6 +23,7 @@ let # proxy_password: password # tags: mytag0, mytag1 + ${optionalString (cfg.tags != null ) "tags: ${concatStringsSep "," cfg.tags }"} # collect_ec2_tags: no # recent_point_threshold: 30 @@ -80,6 +81,13 @@ in { type = types.str; }; + tags = mkOption { + description = "The tags to mark this Datadog agent"; + example = [ "test" "service" ]; + default = null; + type = types.nullOr (types.listOf types.str); + }; + hostname = mkOption { description = "The hostname to show in the Datadog dashboard (optional)"; default = null; From fa5eb0a7da226ff593f36d3a6661b5a780926e7b Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Sun, 14 Jun 2015 20:00:21 -0700 Subject: [PATCH 33/90] rethinkdb: 2.0.0-1 -> 2.0.3 --- pkgs/servers/nosql/rethinkdb/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/nosql/rethinkdb/default.nix b/pkgs/servers/nosql/rethinkdb/default.nix index 79343b04483..2f47d542d00 100644 --- a/pkgs/servers/nosql/rethinkdb/default.nix +++ b/pkgs/servers/nosql/rethinkdb/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "rethinkdb-${version}"; - version = "2.0.0-1"; + version = "2.0.3"; src = fetchurl { url = "http://download.rethinkdb.com/dist/${name}.tgz"; - sha256 = "0fbxs6gmlmgkbfrmi0f4xyr3vqwylr6i7fa4p68y12qy6kv7q9pc"; + sha256 = "1580h5clkw8kprdb9waaf8al3wa2vj5d2l2m394r91fq45ss23sd"; }; preConfigure = '' From 5af468d0bc670f020ff75372be82c2857da912bc Mon Sep 17 00:00:00 2001 From: Pascal Wittmann Date: Mon, 15 Jun 2015 10:09:07 +0200 Subject: [PATCH 34/90] libmspack: update from 0.4alpha to 0.5alpha fixes CVE-2014-9732, CVE-2015-4467, CVE-2015-4468, CVE-2015-4469, CVE-2015-4470, CVE-2015-4471 and CVE-2015-4472. --- pkgs/development/libraries/libmspack/default.nix | 10 +++------- 1 file changed, 3 insertions(+), 7 deletions(-) diff --git a/pkgs/development/libraries/libmspack/default.nix b/pkgs/development/libraries/libmspack/default.nix index b78e583fa64..1b981edcdcd 100644 --- a/pkgs/development/libraries/libmspack/default.nix +++ b/pkgs/development/libraries/libmspack/default.nix @@ -1,13 +1,10 @@ {stdenv, fetchurl}: stdenv.mkDerivation { - name = "libmspack-0.4alpha"; + name = "libmspack-0.5alpha"; src = fetchurl { - # upstream url: "curl: (22) The requested URL returned error: 406 Not Acceptable" - #url = http://www.cabextract.org.uk/libmspack/libmspack-0.4alpha.tar.gz; - url = "http://pkgs.fedoraproject.org/lookaside/pkgs/libmspack/" - + "libmspack-0.4alpha.tar.gz/1ab10b507259993c74b4c41a88103b59/libmspack-0.4alpha.tar.gz"; - sha256 = "0s2w5zxx9cw7445cx9ap59ky5n7r201551zg906w9ghcys1qk5dp"; + url = "http://www.cabextract.org.uk/libmspack/libmspack-0.5alpha.tar.gz"; + sha256 = "04413hynb7zizxnkgy9riik3612dwirkpr6fcjrnfl2za9sz4rw9"; }; meta = { @@ -15,5 +12,4 @@ stdenv.mkDerivation { homepage = http://www.cabextract.org.uk/libmspack; license = stdenv.lib.licenses.lgpl2; }; - } From d95fba37460d1a727e06b4df0e3dec659b67eafa Mon Sep 17 00:00:00 2001 From: Philipp Hausmann Date: Mon, 15 Jun 2015 10:47:53 +0200 Subject: [PATCH 35/90] haskell-uhc: Use newer version with relaxed cabal constraints. --- pkgs/development/compilers/uhc/default.nix | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/pkgs/development/compilers/uhc/default.nix b/pkgs/development/compilers/uhc/default.nix index 64d51f971b9..1dbfb039f90 100644 --- a/pkgs/development/compilers/uhc/default.nix +++ b/pkgs/development/compilers/uhc/default.nix @@ -2,13 +2,17 @@ let wrappedGhc = ghcWithPackages (hpkgs: with hpkgs; [shuffle hashable mtl network uhc-util uulib] ); in stdenv.mkDerivation rec { - version = "1.1.9.1"; + # Important: + # The commits "Fixate/tag v..." are the released versions. + # Ignore the "bumped version to ...." commits, they do not + # correspond to releases. + version = "1.1.9.1.20150611"; name = "uhc-${version}"; src = fetchgit { url = "https://github.com/UU-ComputerScience/uhc.git"; - rev = "c4955d01089485cdcfec785fe2bbcdf2253bee4b"; - sha256 = "1n2bfbzni2hwv90z3mgn0x3l3jwc7sy8ryk81p5mlvlis1wzxnq3"; + rev = "b80098e07d12900f098ea964b1d2b3f38e5c9900"; + sha256 = "14qg1fd9pgbczcmn5ggkd9674qadx1izmz8363ps7c207dg94f9x"; }; postUnpack = "sourceRoot=\${sourceRoot}/EHC"; From 18421542f919ffb78bd9168ca9c310b80e6103fe Mon Sep 17 00:00:00 2001 From: Joachim Fasting Date: Mon, 15 Jun 2015 15:31:06 +0200 Subject: [PATCH 36/90] electrum: 2.0.4 -> 2.3.2 --- pkgs/applications/misc/electrum/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/misc/electrum/default.nix b/pkgs/applications/misc/electrum/default.nix index 0f7b85e055b..b910b1796a3 100644 --- a/pkgs/applications/misc/electrum/default.nix +++ b/pkgs/applications/misc/electrum/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { name = "electrum-${version}"; - version = "2.0.4"; + version = "2.3.2"; src = fetchurl { url = "https://download.electrum.org/Electrum-${version}.tar.gz"; - sha256 = "0q9vrrzy2iypfg2zvs3glzvqyq65dnwn1ijljvfqfwrkpvpp0zxp"; + sha256 = "0idqm77d5rbwpw14wqg4ysvbjyqjw7zlqfcdxniy74i2qwz163bi"; }; propagatedBuildInputs = with pythonPackages; [ From b3113802276b133fb62bd57d129937252cbe7c76 Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Sat, 13 Jun 2015 11:38:10 +0200 Subject: [PATCH 37/90] hackage-packages.nix: update to https://github.com/commercialhaskell/all-cabal-files/commit/2c4a8914cbc96987a1c2f9a32ca798f7055d548c with hackage2nix revision c519a8ee5f75311f8eaaca7eaf5af8f7ad26d33e --- .../haskell-modules/hackage-packages.nix | 404 ++++++++++++------ 1 file changed, 275 insertions(+), 129 deletions(-) diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index e5cdabbed67..75d61b83d96 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -17727,8 +17727,8 @@ self: { }: mkDerivation { pname = "agentx"; - version = "0.1.0.5"; - sha256 = "0a6zzn4zv5f1zl10vz1p4iw32s9jd605px4ziy5v24fmjm5xnbzb"; + version = "0.2.0.0"; + sha256 = "0pmnrij90xag46af4c5yws5g26pf77l5ck864f4cyw5g9acw67g6"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -17891,8 +17891,8 @@ self: { }: mkDerivation { pname = "aivika-experiment"; - version = "3.1"; - sha256 = "19x4y060r9cgkfffyxdgilmrrjv4ycpxv6w8gclkfrxj1ywwkwx4"; + version = "4.0.3"; + sha256 = "1v0x37kmav87b3mxvribw6658glf5hbk7npipkabp1qbfz5sp7zv"; buildDepends = [ aivika base containers directory filepath mtl network-uri parallel-io split @@ -17925,8 +17925,8 @@ self: { }: mkDerivation { pname = "aivika-experiment-chart"; - version = "3.1"; - sha256 = "17bp7bp3x7z3xlzd6922mjm44v8jlkw1ak3zfr31146hlifgfhyw"; + version = "4.0.3"; + sha256 = "1c5xzp0n67fg799cdf6aqc7sxbv3dy6nkiilyc5hlr8bg3r20bpd"; buildDepends = [ aivika aivika-experiment array base Chart colour containers data-default-class filepath lens mtl split @@ -19370,8 +19370,8 @@ self: { }: mkDerivation { pname = "angel"; - version = "0.6.0"; - sha256 = "0625r8jy9v6x5v5y5vrz2z7bqag9hwjnxr7ir35bq18xd5fpr9kf"; + version = "0.6.1"; + sha256 = "1wkllv4ziggj3smhghdk5qsgccds9d69rhx1gi079ph7z533w2dc"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -19785,7 +19785,9 @@ self: { mkDerivation { pname = "apiary"; version = "1.4.3"; + revision = "1"; sha256 = "1z6fgdkn3k4sbwk5jyz6yp9qwllhv2m9vq7z25fhmj41y3spgcsc"; + editedCabalFile = "024867d05ec04c0b83c41e948b80c56686cc170beed600daffa8d8c725e50a32"; buildDepends = [ base blaze-builder blaze-html blaze-markup bytestring bytestring-read case-insensitive data-default-class exceptions @@ -19798,7 +19800,6 @@ self: { base bytestring http-types HUnit mtl tasty tasty-hunit tasty-quickcheck wai wai-extra ]; - jailbreak = true; homepage = "https://github.com/philopon/apiary"; description = "Simple and type safe web framework that generate web API documentation"; license = stdenv.lib.licenses.mit; @@ -19853,14 +19854,13 @@ self: { mkDerivation { pname = "apiary-cookie"; version = "1.4.0"; - revision = "1"; + revision = "2"; sha256 = "017bxqavv4w5r2ghgmyhljqa4fyzl02v2sjwxi056s3phgrlrkrx"; - editedCabalFile = "50b9adcb346e7233cb73eef7e7d00902a7b43454ab998f76923582bada569e32"; + editedCabalFile = "4edecbd2a1e6fb740815be85cc9c4836144338af88e6774348a1703e861a9771"; buildDepends = [ apiary base blaze-builder blaze-html bytestring cookie time types-compat wai web-routing ]; - jailbreak = true; homepage = "https://github.com/philopon/apiary"; description = "Cookie support for apiary web framework"; license = stdenv.lib.licenses.mit; @@ -19909,15 +19909,14 @@ self: { mkDerivation { pname = "apiary-logger"; version = "1.4.0"; - revision = "1"; + revision = "2"; sha256 = "0pf030sn4mf05avl11hs9kz6qi9667s2vavn3wsxp1anl9bghk48"; - editedCabalFile = "cb2677faabb41ccf7a4990179990f55c14d5bcd517591ccd086b84c68362c93c"; + editedCabalFile = "ce71ccd5e0a1f20777b17efdc536aab8f43a3468f54fa14609c635aa731ce944"; buildDepends = [ apiary base data-default-class fast-logger lifted-base monad-control monad-logger transformers transformers-base types-compat ]; - jailbreak = true; homepage = "https://github.com/philopon/apiary"; description = "fast-logger support for apiary web framework"; license = stdenv.lib.licenses.mit; @@ -21693,6 +21692,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "attoparsec-trans" = callPackage + ({ mkDerivation, attoparsec, base, transformers }: + mkDerivation { + pname = "attoparsec-trans"; + version = "0.1.0.3"; + sha256 = "11a743qgh9rwjyf1hng5jg139xr11dsjj1bisqaaayb17addd2xx"; + buildDepends = [ attoparsec base transformers ]; + homepage = "https://github.com/srijs/haskell-attoparsec-trans"; + description = "Interleaved effects for attoparsec parsers"; + license = stdenv.lib.licenses.mit; + }) {}; + "attosplit" = callPackage ({ mkDerivation, attoparsec, base, bytestring }: mkDerivation { @@ -22178,6 +22189,24 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; + "aws-dynamodb-conduit" = callPackage + ({ mkDerivation, aeson, attoparsec-trans, aws, base, bytestring + , conduit, http-conduit, http-types, json-togo, resourcet, text + , transformers + }: + mkDerivation { + pname = "aws-dynamodb-conduit"; + version = "0.1.0.2"; + sha256 = "02q49anmairvjwzvgn8kqx27965n71xbyi86wwlmrs4w0dkbsd41"; + buildDepends = [ + aeson attoparsec-trans aws base bytestring conduit http-conduit + http-types json-togo resourcet text transformers + ]; + homepage = "https://github.com/srijs/haskell-aws-dynamodb-query"; + description = "Conduit-based interface for AWS DynamoDB"; + license = stdenv.lib.licenses.mit; + }) {}; + "aws-dynamodb-streams" = callPackage ({ mkDerivation, aeson, attoparsec, aws, aws-general, base , base-unicode-symbols, base16-bytestring, base64-bytestring @@ -23348,8 +23377,8 @@ self: { }: mkDerivation { pname = "basic-prelude"; - version = "0.4.1"; - sha256 = "041wnym7b8p70kcbkxxbgszmi2y88xs0ww357jrn0v6cc21h60j9"; + version = "0.5.0"; + sha256 = "1l8hc99sxm27gd93zq6v0l0x2rzl6fd9zp7snh14m4yriqrn5xfi"; buildDepends = [ base bytestring containers filepath hashable lifted-base ReadArgs safe text transformers unordered-containers vector @@ -23781,8 +23810,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "between"; - version = "0.9.0.2"; - sha256 = "0n3nx077hv10rwv2kl3n1a3v40sr1qzfj9jwb6cvd1l0zx42igw8"; + version = "0.10.0.0"; + sha256 = "10bj4v2451c9dri3r9c825xnr4lb8jhihr05nhc6m8fdvqnyqvsi"; buildDepends = [ base ]; homepage = "https://github.com/trskop/between"; description = "Function combinator \"between\" and derived combinators"; @@ -26879,6 +26908,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "break" = callPackage + ({ mkDerivation, base, mtl, transformers }: + mkDerivation { + pname = "break"; + version = "1.0.0"; + sha256 = "15fqdha71i4ziv0ra8v2mfp0fviwgs27xlsvc0chb8icqf33y22m"; + buildDepends = [ base mtl transformers ]; + description = "Break from a loop"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "breakout" = callPackage ({ mkDerivation, base, haskgame, mtl, SDL }: mkDerivation { @@ -27723,8 +27763,8 @@ self: { }: mkDerivation { pname = "bytestring-read"; - version = "0.3.0"; - sha256 = "19bq478066chy35fnfjq5bg2f196zl6qi2dssqwlr9bivgvk434g"; + version = "0.3.1"; + sha256 = "0df6mb5fhfd1kgah5gv4q4ykxvl0y8hbqrdvm17nh33cxj2csj00"; buildDepends = [ base bytestring types-compat ]; testDepends = [ base bytestring doctest tasty tasty-quickcheck ]; jailbreak = true; @@ -31615,8 +31655,8 @@ self: { }: mkDerivation { pname = "classy-prelude"; - version = "0.12.0"; - sha256 = "0g72084wnfqam0djpck76bb7dmphpjs1h32w361cqyvgxkyy1prw"; + version = "0.12.0.1"; + sha256 = "0ny5cxkzbjhhsmypsp4sjm7nm0jv2l2kysgcphm6j1l3dr0ck6il"; buildDepends = [ base basic-prelude bifunctors bytestring chunked-data containers dlist enclosed-exceptions exceptions ghc-prim hashable lifted-base @@ -34181,8 +34221,8 @@ self: { }: mkDerivation { pname = "conduit-combinators"; - version = "1.0.0"; - sha256 = "1ibbj3ipkys26np9d791ynpfzgrw3miclcj02bb0ipmvqngm90hv"; + version = "1.0.1"; + sha256 = "014n3qhn9flwj43zjp62vagp5df9ll6nkjk1x9qpagni1vf9cbqq"; buildDepends = [ base base16-bytestring base64-bytestring bytestring chunked-data conduit conduit-extra filepath monad-control mono-traversable @@ -34555,13 +34595,12 @@ self: { }: mkDerivation { pname = "connection-pool"; - version = "0.1.1.0"; - sha256 = "08mfl5gwbxzkf6dvqvshmzpjy02f46avimw8ss66br2397bi0qj7"; + version = "0.1.2.0"; + sha256 = "12nr9vl884yj4yq9dyfc725zi6dw0amp65xlm9hjm7wffz6mc5az"; buildDepends = [ base between data-default-class monad-control network resource-pool streaming-commons time transformers-base ]; - jailbreak = true; homepage = "https://github.com/trskop/connection-pool"; description = "Connection pool built on top of resource-pool and streaming-commons"; license = stdenv.lib.licenses.bsd3; @@ -39912,8 +39951,8 @@ self: { }: mkDerivation { pname = "debian-build"; - version = "0.7.1.0"; - sha256 = "0hzvv6aazpf7r75yygcqy1ldz3j9shs6spv71nzn040rny67cdll"; + version = "0.7.1.1"; + sha256 = "0r2f14h0bpbq861jfa0rgp0y87nq142f80dyjzyzzrdwc8szj120"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -40373,6 +40412,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "delta" = callPackage + ({ mkDerivation, base, containers, directory, filepath, fs-events + , sodium, time + }: + mkDerivation { + pname = "delta"; + version = "0.1.0.1"; + sha256 = "0kjii2hqwzzsb8i09547y0qxrdak3xkhgv7dqahbpypzh8hldgzf"; + isLibrary = true; + isExecutable = true; + buildDepends = [ + base containers directory filepath fs-events sodium time + ]; + homepage = "https://github.com/kryoxide/delta"; + description = "A library for detecting file changes"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "delta-h" = callPackage ({ mkDerivation, base, binary, bytestring, containers, monad-atom , nlp-scores, text @@ -45579,10 +45636,9 @@ self: { ({ mkDerivation, base, between, transformers }: mkDerivation { pname = "endo"; - version = "0.1.0.2"; - sha256 = "1wqg0mcaf55wa70wjgd6n0gw56rghz6p76lc6kw4aki969h12xrl"; + version = "0.2.0.0"; + sha256 = "1gqw14nadw1cb49m251swly35gjkb2xhqi0cqhm17ww8r13mzp31"; buildDepends = [ base between transformers ]; - jailbreak = true; homepage = "https://github.com/trskop/endo"; description = "Endomorphism utilities"; license = stdenv.lib.licenses.bsd3; @@ -46476,6 +46532,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ether" = callPackage + ({ mkDerivation, base, mtl, newtype-generics, QuickCheck, tasty + , tasty-quickcheck, template-haskell, transformers + }: + mkDerivation { + pname = "ether"; + version = "0.2.1.0"; + sha256 = "1iwi3whaxnpwfdghw1rli9dxqh1c28hhxkdvl4wslj0vc014h3di"; + buildDepends = [ + base mtl newtype-generics template-haskell transformers + ]; + testDepends = [ + base mtl QuickCheck tasty tasty-quickcheck transformers + ]; + homepage = "https://int-index.github.io/ether/"; + description = "Monad transformers and classes"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "ethereum-client-haskell" = callPackage ({ mkDerivation, ansi-wl-pprint, array, base, base16-bytestring , binary, bytestring, cmdargs, containers, cryptohash, data-default @@ -52844,12 +52919,12 @@ self: { }) {}; "ghc-simple" = callPackage - ({ mkDerivation, base, data-default, ghc, ghc-paths }: + ({ mkDerivation, base, ghc, ghc-paths }: mkDerivation { pname = "ghc-simple"; - version = "0.1.0.0"; - sha256 = "0a8xla80al1glxpf0dsbzdgwbzwxmk9cr6xwfmmz237q7dv4pjhf"; - buildDepends = [ base data-default ghc ghc-paths ]; + version = "0.1.2.0"; + sha256 = "0cwirw9j52khkl8fsgw22136nb3nwlbiahvfcds8hryvr64x9vql"; + buildDepends = [ base ghc ghc-paths ]; homepage = "https://github.com/valderman/ghc-simple"; description = "Simplified interface to the GHC API"; license = stdenv.lib.licenses.mit; @@ -62021,6 +62096,7 @@ self: { base basic-prelude containers errors mtl random-shuffle tasty tasty-hunit tasty-quickcheck text ]; + jailbreak = true; description = "Implementation of the rules of Love Letter"; license = stdenv.lib.licenses.asl20; hydraPlatforms = stdenv.lib.platforms.none; @@ -64598,7 +64674,9 @@ self: { mkDerivation { pname = "highlighting-kate"; version = "0.6"; + revision = "1"; sha256 = "16334fbiyq6017zbgc59qc00h0bk24xh4dcrbqx63dvf72ac37dk"; + editedCabalFile = "7466b389fd27b0520d371b2b225cb6024e9b7dd371cffa78169c219ab449558b"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -64919,7 +64997,9 @@ self: { mkDerivation { pname = "hipbot"; version = "0.5"; + revision = "1"; sha256 = "0acy9bp2dwszd01l514nx2crdxgb356k18pm9ravddljxr24n1hs"; + editedCabalFile = "6ac1673be45c18dc010eeeef508a021ec9fef4e0a4e05864733f91aec8508ab8"; buildDepends = [ aeson base bifunctors blaze-builder bytestring either exceptions http-client http-client-tls http-types jwt lens mtl network-uri @@ -64927,7 +65007,6 @@ self: { unordered-containers utf8-string wai wai-lens webcrank webcrank-wai wreq ]; - jailbreak = true; homepage = "https://github.com/purefn/hipbot"; description = "A library for building HipChat Bots"; license = stdenv.lib.licenses.bsd3; @@ -65864,8 +65943,8 @@ self: { ({ mkDerivation, base, binary, gsl, hmatrix, storable-complex }: mkDerivation { pname = "hmatrix-gsl-stats"; - version = "0.3.0.2"; - sha256 = "1n0p7pg9rsdckcysczg7l8rqfm3xw1rc2jzp0khb1i33nhbr7bzn"; + version = "0.3.0.3"; + sha256 = "0zrh3knwqkaqlgajza22jfg3xhsxhiaf8qmiwnd9qjbasnm5a1lp"; buildDepends = [ base binary hmatrix storable-complex ]; pkgconfigDepends = [ gsl ]; homepage = "http://code.haskell.org/hmatrix-gsl-stats"; @@ -68322,9 +68401,10 @@ self: { mkDerivation { pname = "hs-pkg-config"; version = "0.2.1.0"; + revision = "1"; sha256 = "09v2kp643asl3zpv8rbb8a7zv0h3bn5l4gxz44d71kly9qr3jkhh"; + editedCabalFile = "9337acf593d6f7e1d54f81886cb3736001a127e3b75ba01bd97a99d77565f784"; buildDepends = [ base data-default-class text ]; - jailbreak = true; homepage = "https://github.com/trskop/hs-pkg-config"; description = "Create pkg-config configuration files"; license = stdenv.lib.licenses.bsd3; @@ -69704,9 +69784,9 @@ self: { mkDerivation { pname = "hslua"; version = "0.4.0"; - revision = "1"; + revision = "2"; sha256 = "0l50ppvnavs3lc1vmrpxhlb3ffl772n1hk8mdi9w4ml64ninba3p"; - editedCabalFile = "a2019a0881b90b842dfa9c88e452a45bbadb25d9461d0549ab8fd328a82757ee"; + editedCabalFile = "43f6956aba870857548523718d3d5645e422187964e5158d14a9c17d96671ccb"; buildDepends = [ base bytestring ]; testDepends = [ base bytestring hspec hspec-contrib HUnit text ]; extraLibraries = [ lua ]; @@ -75448,12 +75528,13 @@ self: { }) {}; "invariant" = callPackage - ({ mkDerivation, base, contravariant }: + ({ mkDerivation, base, contravariant, hspec, QuickCheck }: mkDerivation { pname = "invariant"; - version = "0.1.1"; - sha256 = "077jhn2fspnjkr8p3sh6draidqpk6wpism73rz8172acd4jjg4fz"; + version = "0.1.2"; + sha256 = "02p114wnpxbqxik4sz87bd9rcqfs9klgsxi9pc4v1qwyb64mb92b"; buildDepends = [ base contravariant ]; + testDepends = [ base hspec QuickCheck ]; description = "Haskell 98 invariant functors"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -77685,6 +77766,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "json-togo" = callPackage + ({ mkDerivation, aeson, attoparsec, attoparsec-trans, base + , bytestring, scientific, text, transformers, unordered-containers + , vector + }: + mkDerivation { + pname = "json-togo"; + version = "0.1.0.1"; + sha256 = "05g8k8qsxjwqrdwqf24g90hx5jlrwjpa4vsjf0ddrw0whnva3gbz"; + buildDepends = [ + aeson attoparsec attoparsec-trans base bytestring scientific text + transformers unordered-containers vector + ]; + jailbreak = true; + homepage = "https://github.com/srijs/haskell-json-togo"; + description = "Effectful parsing of JSON documents"; + license = stdenv.lib.licenses.mit; + }) {}; + "json-tools" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, containers , process, tar, text, unordered-containers, vector @@ -80977,8 +81077,8 @@ self: { }: mkDerivation { pname = "leksah"; - version = "0.15.0.1"; - sha256 = "169vrqdxcx8xkilrw3dh5zmdsb876fny4n0k5gzvi8fian0dl8nh"; + version = "0.15.0.3"; + sha256 = "11b4kp1bbw35gsrdcr5kjyjrfiqrqfy645nbpngjz7rzivjl6n4s"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -81012,8 +81112,8 @@ self: { }: mkDerivation { pname = "leksah-server"; - version = "0.15.0.1"; - sha256 = "04sxfzl8p9fk8qkzmwnm7fkg5sgrzjx0992kivgbrnyx7wh06xsp"; + version = "0.15.0.2"; + sha256 = "090nz2kvsf83jdp2lhng5x87a96xzxknsr4vx2jc2r2vs60841lx"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -82466,13 +82566,13 @@ self: { }) {}; "linear-grammar" = callPackage - ({ mkDerivation, base, hspec, QuickCheck }: + ({ mkDerivation, base, containers, hspec, QuickCheck }: mkDerivation { pname = "linear-grammar"; - version = "0.0.1.6"; - sha256 = "05mzxv1ixdxirmm31jqwd8w749dpy113pyw1mfr6ck3ksva5g1ap"; - buildDepends = [ base QuickCheck ]; - testDepends = [ base hspec QuickCheck ]; + version = "0.0.2.1"; + sha256 = "00vfhcqhg6azb1ay12n248l0bjg5g0c5y5ybz5rqf2jdlab7fg97"; + buildDepends = [ base containers QuickCheck ]; + testDepends = [ base containers hspec QuickCheck ]; description = "A simple grammar for building linear equations and inclusive inequalities"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -83785,8 +83885,8 @@ self: { }: mkDerivation { pname = "lock-file"; - version = "0.5.0.1"; - sha256 = "0x1pis244pg5k91y3p40m2pc483vx49gcdqa95f7q0gjsnvb9yi9"; + version = "0.5.0.2"; + sha256 = "1l4slkykw59p20kw9iqaa4pjczqx701a9z14nvbzwrmgs2acnki7"; buildDepends = [ base data-default-class directory exceptions tagged-exception-core transformers @@ -83796,7 +83896,6 @@ self: { tagged-exception-core test-framework test-framework-hunit test-framework-quickcheck2 transformers ]; - jailbreak = true; homepage = "https://github.com/trskop/lock-file"; description = "Provide exclusive access to a resource using lock file"; license = stdenv.lib.licenses.bsd3; @@ -89246,10 +89345,8 @@ self: { }: mkDerivation { pname = "mono-traversable"; - version = "0.9.1"; - revision = "1"; - sha256 = "0hzqlldilkkfmrq3pkymwkzpp9dn40v6fa18kahxlf4qiyih0xzc"; - editedCabalFile = "28392123a8b245f7bc2c13bb63f5c3008118ed38e107cf0534be37461fb64daf"; + version = "0.9.2"; + sha256 = "1cw8bsf6ayalsx0l0xwb2f2j2rg6zpfsvci174fr4xiyr646mpd6"; buildDepends = [ base bytestring comonad containers dlist dlist-instances hashable semigroupoids semigroups text transformers unordered-containers @@ -90450,6 +90547,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "murmur3" = callPackage + ({ mkDerivation, base, base16-bytestring, binary, bytestring, HUnit + , QuickCheck, test-framework, test-framework-hunit + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "murmur3"; + version = "1.0.0"; + sha256 = "1rdnfy37dmmrqpapdv9h22ki94mxrz1xdk5ibcj833q35868kjmq"; + buildDepends = [ base binary bytestring ]; + testDepends = [ + base base16-bytestring bytestring HUnit QuickCheck test-framework + test-framework-hunit test-framework-quickcheck2 + ]; + homepage = "http://github.com/plaprade/murmur3"; + description = "Pure Haskell implementation of the MurmurHash3 x86_32 algorithm"; + license = stdenv.lib.licenses.publicDomain; + }) {}; + "murmurhash3" = callPackage ({ mkDerivation, haskell2010 }: mkDerivation { @@ -95214,6 +95330,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "optional-args" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "optional-args"; + version = "1.0.0"; + sha256 = "0j49cp5y7gp9acvhw315lq92mgr35fwaw90vpxy0n9g541ls350z"; + buildDepends = [ base ]; + description = "Optional function arguments"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "options" = callPackage ({ mkDerivation, base, chell, chell-quickcheck, containers , monads-tf, transformers @@ -95478,8 +95605,8 @@ self: { }: mkDerivation { pname = "orgmode-parse"; - version = "0.1.1.1"; - sha256 = "17slf2i7k8bk1d47l165awn38dlpq2rdw6glzvp8if1dir2l2jl7"; + version = "0.1.1.2"; + sha256 = "1ys9gcydipjxn5ba7ndmz70ri218d6wivxrd7xvcsf4kncfks3xi"; buildDepends = [ aeson attoparsec base bytestring containers free hashable old-locale text thyme unordered-containers @@ -98006,8 +98133,8 @@ self: { }: mkDerivation { pname = "persistent-template"; - version = "2.1.3.3"; - sha256 = "1p9vndchcd06ajqmqmf3pw5ql9r6jqbs9xl5jxv1x0pjvbq6yjy5"; + version = "2.1.3.4"; + sha256 = "0wi1mrcilz66jnlgz16crqlh4bibb03mj460bgg3af4f8zpwja2g"; buildDepends = [ aeson base bytestring containers ghc-prim monad-control monad-logger path-pieces persistent tagged template-haskell text @@ -98016,7 +98143,6 @@ self: { testDepends = [ aeson base bytestring hspec persistent QuickCheck text transformers ]; - jailbreak = true; homepage = "http://www.yesodweb.com/book/persistent"; description = "Type-safe, non-relational, multi-backend persistence"; license = stdenv.lib.licenses.mit; @@ -103669,8 +103795,8 @@ self: { ({ mkDerivation, base, QuickCheck }: mkDerivation { pname = "quickcheck-simple"; - version = "0.0.1.0"; - sha256 = "04r5nqm7g5wp13k6d109yykky9i121f65bxlv5ji5sk35yp650c4"; + version = "0.1.0.0"; + sha256 = "0vnxyb3qz8i1rpmkga6151cld1jr3kiyv3xrhg814mhf1fmhb8xl"; buildDepends = [ base QuickCheck ]; description = "Test properties and default-mains for QuickCheck"; license = stdenv.lib.licenses.bsd3; @@ -105006,12 +105132,15 @@ self: { "record" = callPackage ({ mkDerivation, base, base-prelude, basic-lens, template-haskell + , transformers }: mkDerivation { pname = "record"; - version = "0.4.0.0"; - sha256 = "0ml0rmqscdkp4zp430q206lrnah3j5d4bbra7ka526gagmrvpnmb"; - buildDepends = [ base base-prelude basic-lens template-haskell ]; + version = "0.4.0.2"; + sha256 = "18j30j7dppm0lqf9p345bfz65cls15ka6jyflamwgig5h0dzz5mw"; + buildDepends = [ + base base-prelude basic-lens template-haskell transformers + ]; homepage = "https://github.com/nikita-volkov/record"; description = "Anonymous records"; license = stdenv.lib.licenses.mit; @@ -105815,7 +105944,9 @@ self: { mkDerivation { pname = "regex-tdfa"; version = "1.2.0"; + revision = "1"; sha256 = "00gl9sx3hzd83lp38jlcj7wvzrda8kww7njwlm1way73m8aar0pw"; + editedCabalFile = "5489b69b9f0e8e181ee5134fd500bb0e2b4f914234c5223c59186035fb50478e"; buildDepends = [ array base bytestring containers ghc-prim mtl parsec regex-base ]; @@ -113525,6 +113656,25 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "simplex-basic" = callPackage + ({ mkDerivation, base, bifunctors, containers, hspec + , linear-grammar, mtl, QuickCheck, transformers + }: + mkDerivation { + pname = "simplex-basic"; + version = "0.0.0.1"; + sha256 = "180bnrka1id16scz4zzi60m8692b7pyicfzfbzvi8rz1shl038zq"; + buildDepends = [ + base bifunctors linear-grammar mtl QuickCheck transformers + ]; + testDepends = [ + base bifunctors containers hspec linear-grammar mtl QuickCheck + transformers + ]; + description = "Very basic simplex implementation"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "simseq" = callPackage ({ mkDerivation, base, bio, bytestring, random }: mkDerivation { @@ -115320,10 +115470,10 @@ self: { }: mkDerivation { pname = "snaplet-sqlite-simple"; - version = "0.4.8.2"; - sha256 = "00a92wymniaw0si4xpkx1442prmcjimwrjjqiqnkj6k8bxs7p2jm"; + version = "0.4.8.3"; + sha256 = "0nc0kv9s3c4wc3xb6jggx9v4p141c3af07x8vda18c7qlfif5nx3"; buildDepends = [ - aeson base bytestring clientsession configurator direct-sqlite + aeson base bytestring clientsession configurator direct-sqlite lens MonadCatchIO-transformers mtl snap sqlite-simple text transformers unordered-containers ]; @@ -115333,7 +115483,6 @@ self: { SafeSemaphore snap snap-core sqlite-simple stm test-framework test-framework-hunit text time transformers unordered-containers ]; - jailbreak = true; homepage = "https://github.com/nurpax/snaplet-sqlite-simple"; description = "sqlite-simple snaplet for the Snap Framework"; license = stdenv.lib.licenses.bsd3; @@ -115544,8 +115693,8 @@ self: { }: mkDerivation { pname = "snmp"; - version = "0.1.0.3"; - sha256 = "1zncgn3i6xbvxrwdf6s6vhbmsf6sqncf2rbllx26dz1bmxh4gr33"; + version = "0.2.0.0"; + sha256 = "0vjbpjsa4ivsjzvfc9sr457pms2rw1zpb92d971n0yccl0bxmf67"; buildDepends = [ asn1-encoding asn1-parse asn1-types async base binary bytestring cipher-aes cipher-des containers crypto-cipher-types cryptohash mtl @@ -117299,44 +117448,44 @@ self: { }) {}; "stack" = callPackage - ({ mkDerivation, aeson, async, attoparsec, base, base64-bytestring - , bifunctors, binary, bytestring, Cabal, conduit, conduit-extra - , containers, cpphs, cryptohash, cryptohash-conduit, deepseq - , directory, either, enclosed-exceptions, exceptions, fast-logger - , filepath, hashable, hspec, http-client, http-client-tls - , http-conduit, http-types, lifted-base, monad-control - , monad-logger, monad-loops, mtl, old-locale, optparse-applicative - , optparse-simple, path, persistent, persistent-sqlite - , persistent-template, pretty, process, resourcet, safe, split, stm - , streaming-commons, tar, template-haskell, temporary, text, time - , transformers, transformers-base, unix, unordered-containers - , vector, vector-binary-instances, void, yaml, zlib + ({ mkDerivation, aeson, async, attoparsec, base, base16-bytestring + , base64-bytestring, bifunctors, binary, bytestring, Cabal, conduit + , conduit-combinators, conduit-extra, containers, cryptohash + , cryptohash-conduit, deepseq, directory, either + , enclosed-exceptions, exceptions, fast-logger, filepath, hashable + , hspec, http-client, http-client-tls, http-conduit, http-types + , lifted-base, monad-control, monad-logger, monad-loops, mtl + , old-locale, optparse-applicative, optparse-simple, path + , persistent, persistent-sqlite, persistent-template, pretty + , process, resourcet, safe, split, stm, streaming-commons, tar + , template-haskell, temporary, text, time, transformers + , transformers-base, unix, unordered-containers, vector + , vector-binary-instances, void, yaml, zlib }: mkDerivation { pname = "stack"; - version = "0.0.1"; - sha256 = "04bb0wih2nzqrq8si48w1p6zc4b7nzrgrg4cbnly63hgx64vyhq3"; + version = "0.0.2.1"; + sha256 = "1gv2cbjnr93s4cyhybpd8nsqa8gqd9hpm9wyrh19fl82p8db46x6"; isLibrary = true; isExecutable = true; buildDepends = [ - aeson async attoparsec base base64-bytestring bifunctors binary - bytestring Cabal conduit conduit-extra containers cryptohash - cryptohash-conduit deepseq directory either enclosed-exceptions - exceptions fast-logger filepath hashable http-client - http-client-tls http-conduit http-types lifted-base monad-control - monad-logger monad-loops mtl old-locale optparse-applicative - optparse-simple path persistent persistent-sqlite - persistent-template pretty process resourcet safe split stm - streaming-commons tar template-haskell temporary text time - transformers transformers-base unix unordered-containers vector - vector-binary-instances void yaml zlib + aeson async attoparsec base base16-bytestring base64-bytestring + bifunctors binary bytestring Cabal conduit conduit-combinators + conduit-extra containers cryptohash cryptohash-conduit deepseq + directory either enclosed-exceptions exceptions fast-logger + filepath hashable http-client http-client-tls http-conduit + http-types lifted-base monad-control monad-logger monad-loops mtl + old-locale optparse-applicative optparse-simple path persistent + persistent-sqlite persistent-template pretty process resourcet safe + split stm streaming-commons tar template-haskell temporary text + time transformers transformers-base unix unordered-containers + vector vector-binary-instances void yaml zlib ]; testDepends = [ base Cabal conduit conduit-extra containers cryptohash directory exceptions filepath hspec http-conduit monad-logger path resourcet temporary transformers ]; - buildTools = [ cpphs ]; homepage = "https://github.com/commercialhaskell/stack test/package-dump/ghc-7.8.txt test/package-dump/ghc-7.10.txt"; @@ -120949,17 +121098,14 @@ test/package-dump/ghc-7.10.txt"; }) {}; "tagged-exception-core" = callPackage - ({ mkDerivation, base, exceptions, extensible-exceptions, mmorph - , transformers - }: + ({ mkDerivation, base, exceptions, mmorph, mtl, transformers }: mkDerivation { pname = "tagged-exception-core"; - version = "2.0.0.0"; - sha256 = "02ny4yz9afaazw2pxpkpalffx8i5nhi3x9561blrd0pdrqq8qnib"; - buildDepends = [ - base exceptions extensible-exceptions mmorph transformers - ]; - jailbreak = true; + version = "2.1.0.0"; + revision = "1"; + sha256 = "1w4020qb6f5vnym13a4jrha62vj7rqz3nfsrsxa34dl04y63jcax"; + editedCabalFile = "8f3f0eba857169c03927f8605ed326b7a4a5395582aeac4edcee44369b4c9689"; + buildDepends = [ base exceptions mmorph mtl transformers ]; homepage = "https://github.com/trskop/tagged-exception"; description = "Reflect exceptions using phantom types"; license = stdenv.lib.licenses.bsd3; @@ -124059,8 +124205,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "thumbnail-plus"; - version = "1.0.4"; - sha256 = "110vfk5ri394awzmmq82r87gc9pmvy3500i836602syvd5zfa92x"; + version = "1.0.5"; + sha256 = "0320yfgnsazl7bxm9zf077mi4dgfmlcfnzy1qpdl9w3jl5i7z441"; buildDepends = [ base bytestring conduit conduit-extra data-default directory either gd imagesize-conduit resourcet temporary transformers @@ -124481,13 +124627,14 @@ test/package-dump/ghc-7.10.txt"; mkDerivation { pname = "time-recurrence"; version = "0.9.2"; + revision = "1"; sha256 = "1arqmkagmswimbh78qfz5bcilk9i14w29j4vf4i89d00vac3vrzm"; + editedCabalFile = "7f1fe44ec61160e3fba86a04942d056ac91faa0002817e107e3d8399b71fe427"; buildDepends = [ base data-ordlist mtl time ]; testDepends = [ base data-ordlist HUnit mtl old-locale test-framework test-framework-hunit time ]; - jailbreak = true; homepage = "http://github.com/hellertime/time-recurrence"; description = "Generate recurring dates"; license = stdenv.lib.licenses.gpl3; @@ -126026,8 +126173,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "trurl"; - version = "0.2.0.0"; - sha256 = "167f7wrvrva7764z35l48rxbcnnajm343gqw2b67jh14d5kj6fz9"; + version = "0.2.2.0"; + sha256 = "139c97c63fhgq9lisic5wyfn872j120xsj3i72fs5s0aa9m59w81"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -131837,8 +131984,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "wai-middleware-metrics"; - version = "0.2.0"; - sha256 = "0vqpp7fqjmhknvmizvbzzay3ixk0a5jqq9y80al62hc2yb75pz0w"; + version = "0.2.1"; + sha256 = "0aiig72r72vykd1f1871458d4glnqsrs7rr402jv5ka05d1rg6y0"; buildDepends = [ base ekg-core http-types time wai ]; testDepends = [ base bytestring ekg-core http-types QuickCheck scotty tasty @@ -132815,7 +132962,9 @@ test/package-dump/ghc-7.10.txt"; mkDerivation { pname = "webcrank"; version = "0.2.2"; + revision = "1"; sha256 = "1rgvpp2526lmly2fli65mygplfc6wzqcw5fkn7gq4fcrmql2cisj"; + editedCabalFile = "487831902c68484790108f97e32098dad9711eb15e0729b9ab1ba009e8fd5747"; buildDepends = [ attoparsec base blaze-builder bytestring case-insensitive either exceptions http-date http-media http-types lens mtl semigroups text @@ -132826,7 +132975,6 @@ test/package-dump/ghc-7.10.txt"; http-media http-types lens mtl tasty tasty-hunit tasty-quickcheck unordered-containers ]; - jailbreak = true; homepage = "https://github.com/webcrank/webcrank.hs"; description = "Webmachine inspired toolkit for building http applications and services"; license = stdenv.lib.licenses.bsd3; @@ -136478,8 +136626,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-auth"; - version = "1.4.5"; - sha256 = "0agddsicjqcvraa3lcbxwwnk4mapjjd1y4pdp5kg111kaww6nkdn"; + version = "1.4.5.1"; + sha256 = "161gij0r82raih9lvdws4vsknpm36m00ikd17vhhlzz01q9z7l64"; buildDepends = [ aeson authenticate base base16-bytestring base64-bytestring binary blaze-builder blaze-html blaze-markup byteable bytestring conduit @@ -136489,7 +136637,6 @@ test/package-dump/ghc-7.10.txt"; resourcet safe shakespeare template-haskell text time transformers unordered-containers wai yesod-core yesod-form yesod-persistent ]; - jailbreak = true; homepage = "http://www.yesodweb.com/"; description = "Authentication for Yesod"; license = stdenv.lib.licenses.mit; @@ -136784,8 +136931,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-bin"; - version = "1.4.9.2"; - sha256 = "0bbr9bjgj75jh8q9jzv9h1ivz87svz3j02hwphq32487f3682gd0"; + version = "1.4.10"; + sha256 = "1h55155l7ca664zdwq1x0c6p43gy35p1vvghpgd0ajzip8lsyfq1"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -137302,8 +137449,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-persistent"; - version = "1.4.0.2"; - sha256 = "06qzgq0mb7k0h8q6lh47l0mzx91xn4ba07nmn22vsfvjfdji6lib"; + version = "1.4.0.3"; + sha256 = "0prvrz52c2pr4qsanjzndviyq4f6zc49in69xz5153h2vagbfmb4"; buildDepends = [ base blaze-builder conduit persistent persistent-template resource-pool resourcet transformers yesod-core @@ -137312,7 +137459,6 @@ test/package-dump/ghc-7.10.txt"; base blaze-builder conduit hspec persistent persistent-sqlite text wai-extra yesod-core ]; - jailbreak = true; homepage = "http://www.yesodweb.com/"; description = "Some helpers for using Persistent from Yesod"; license = stdenv.lib.licenses.mit; From a0473fde87721c9211785c1ef66f85717554ca91 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sun, 14 Jun 2015 13:04:08 +0200 Subject: [PATCH 38/90] tzdata -> 2015e --- pkgs/data/misc/tzdata/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/data/misc/tzdata/default.nix b/pkgs/data/misc/tzdata/default.nix index 0ed99bfdb16..6d10fe68a09 100644 --- a/pkgs/data/misc/tzdata/default.nix +++ b/pkgs/data/misc/tzdata/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl }: -let version = "2015d"; in +let version = "2015e"; in stdenv.mkDerivation rec { name = "tzdata-${version}"; @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { srcs = [ (fetchurl { url = "http://www.iana.org/time-zones/repository/releases/tzdata${version}.tar.gz"; - sha256 = "0cfmjvr753b3wjnr1njv268xcs31yl9pifkxx58y42bz4w4517wb"; + sha256 = "0vxs6j1i429vxz4a1lbwjz81k236lxdggqvrlix2ga5xib9vbjgz"; }) (fetchurl { url = "http://www.iana.org/time-zones/repository/releases/tzcode${version}.tar.gz"; - sha256 = "0a3i65b6lracfx18s8j69k0x30x8aq9gx7qm040sybn4qm7ga6i2"; + sha256 = "185db6789kygcpcl48y1dh6m4fkgqcwqjwx7f3s5dys7b2sig8mm"; }) ]; From 553ce28bc296c8f51cf2605e58abaa14d4bb41b2 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 15 Jun 2015 19:58:08 +0200 Subject: [PATCH 39/90] geolite-legacy -> 2015-06-15 --- pkgs/data/misc/geolite-legacy/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/data/misc/geolite-legacy/default.nix b/pkgs/data/misc/geolite-legacy/default.nix index a34c10630aa..b6cc2a25266 100644 --- a/pkgs/data/misc/geolite-legacy/default.nix +++ b/pkgs/data/misc/geolite-legacy/default.nix @@ -8,7 +8,7 @@ let # Annoyingly, these files are updated without a change in URL. This means that # builds will start failing every month or so, until the hashes are updated. - version = "2015-06-03"; + version = "2015-06-15"; in stdenv.mkDerivation { name = "geolite-legacy-${version}"; @@ -22,7 +22,7 @@ stdenv.mkDerivation { srcGeoLiteCityv6 = fetchDB "GeoLiteCityv6-beta/GeoLiteCityv6.dat.gz" "0xjzg76vdsayxyy1yyw64w781vad4c9nbhw61slh2qmazdr360g9"; srcGeoIPASNum = fetchDB "asnum/GeoIPASNum.dat.gz" - "0zccfd1wsny3n1f3wgkb071pp6z01nmk0p6nngha0gwnywchvbx4"; + "18kxswr0b5klimfpj1zhxipvyvrljvcywic4jc1ggcr44lf4hj9w"; srcGeoIPASNumv6 = fetchDB "asnum/GeoIPASNumv6.dat.gz" "0asnmmirridiy57zm0kccb7g8h7ndliswfv3yfk7zm7dk98njnxs"; From 99912bbf0e082cac9edbb8074c6b962057b43d3b Mon Sep 17 00:00:00 2001 From: Dario Bertini Date: Mon, 15 Jun 2015 19:24:02 +0100 Subject: [PATCH 40/90] Add (optional, but opted in by default) support for Windows in ansible --- pkgs/tools/system/ansible/default.nix | 4 ++-- pkgs/top-level/python-packages.nix | 29 +++++++++++++++++++++++++++ 2 files changed, 31 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/system/ansible/default.nix b/pkgs/tools/system/ansible/default.nix index 374528872e8..c23d10d20ee 100644 --- a/pkgs/tools/system/ansible/default.nix +++ b/pkgs/tools/system/ansible/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pythonPackages, python }: +{ windowsSupport ? true, stdenv, fetchurl, pythonPackages, python }: pythonPackages.buildPythonPackage rec { version = "1.9.1"; @@ -21,7 +21,7 @@ pythonPackages.buildPythonPackage rec { propagatedBuildInputs = with pythonPackages; [ paramiko jinja2 pyyaml httplib2 boto six - ]; + ] ++ stdenv.lib.optional windowsSupport pywinrm; postFixup = '' wrapPythonProgramsIn $out/bin "$out $pythonPath" diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 38fda4ad406..3d4aa343b53 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -10508,6 +10508,18 @@ let }; }; + pywinrm = buildPythonPackage (rec { + name = "pywinrm"; + + src = pkgs.fetchgit { + url = https://github.com/diyan/pywinrm.git; + rev = "c9ce62d500007561ab31a8d0a5d417e779fb69d9"; + sha256 = "0n0qlcgin2g5lpby07qbdlnpq5v2qc2yns9zc4zm5prwh2mhs5za"; + }; + + propagatedBuildInputs = with self; [ xmltodict isodate ]; + }); + pyxattr = buildPythonPackage (rec { name = "pyxattr-0.5.1"; @@ -13451,6 +13463,23 @@ let }; }); + xmltodict = buildPythonPackage (rec { + name = "xmltodict-0.9.2"; + + src = pkgs.fetchurl { + url = "http://pypi.python.org/packages/source/x/xmltodict/${name}.tar.gz"; + sha256 = "00crqnjh1kbvcgfnn3b8c7vq30lf4ykkxp1xf3pf7mswr5l1wp97"; + }; + + buildInputs = with self; [ coverage nose ]; + + meta = { + description = "Makes working with XML feel like you are working with JSON"; + homepage = https://github.com/martinblech/xmltodict; + license = licenses.mit; + }; + }); + zbase32 = buildPythonPackage (rec { name = "zbase32-1.1.2"; From b325c1556a9b769ec3f6d5c56eed707e319138a7 Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Mon, 15 Jun 2015 11:31:15 -0700 Subject: [PATCH 41/90] kernel: 3.12.43 -> 3.12.44 --- pkgs/os-specific/linux/kernel/linux-3.12.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-3.12.nix b/pkgs/os-specific/linux/kernel/linux-3.12.nix index 2646bf93b0a..e34eccadda6 100644 --- a/pkgs/os-specific/linux/kernel/linux-3.12.nix +++ b/pkgs/os-specific/linux/kernel/linux-3.12.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, ... } @ args: import ./generic.nix (args // rec { - version = "3.12.43"; + version = "3.12.44"; extraMeta.branch = "3.12"; src = fetchurl { url = "mirror://kernel/linux/kernel/v3.x/linux-${version}.tar.xz"; - sha256 = "08nsppn3rpwydkq0pd8k8fgjfm67y2nbbrcz1hri227crxxx13dm"; + sha256 = "05fyb49ibijq2iv4x25m5a77n8609b4lz8x8n8wfkdywm13479h8"; }; features.iwlwifi = true; From 2fd74f43b5a22923b64ceab2f13fb99f827dec04 Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Mon, 15 Jun 2015 11:31:26 -0700 Subject: [PATCH 42/90] kernel: 3.18.14 -> 3.18.16 --- pkgs/os-specific/linux/kernel/linux-3.18.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-3.18.nix b/pkgs/os-specific/linux/kernel/linux-3.18.nix index 592086b6547..168bfe5e94c 100644 --- a/pkgs/os-specific/linux/kernel/linux-3.18.nix +++ b/pkgs/os-specific/linux/kernel/linux-3.18.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, ... } @ args: import ./generic.nix (args // rec { - version = "3.18.14"; + version = "3.18.16"; extraMeta.branch = "3.18"; src = fetchurl { url = "mirror://kernel/linux/kernel/v3.x/linux-${version}.tar.xz"; - sha256 = "1xh0vvn1l2g1kkg54f0mg0inbpsiqs24ybgsakksmcpcadjgqk1i"; + sha256 = "0c2530amgsk29ina9mfvlncki64w0zs16d2k8bghq3fv9k2qv3nr"; }; features.iwlwifi = true; From 046ba6b7db940c8f70ee6fca0de28464febe4a4d Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Mon, 15 Jun 2015 11:37:05 -0700 Subject: [PATCH 43/90] linux-testing: 4.1-rc7 -> 4.1-rc8 --- pkgs/os-specific/linux/kernel/linux-testing.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix index 60bc4e51209..ec7e597e871 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, ... } @ args: import ./generic.nix (args // rec { - version = "4.1-rc7"; - modDirVersion = "4.1.0-rc7"; + version = "4.1-rc8"; + modDirVersion = "4.1.0-rc8"; extraMeta.branch = "4.1"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/testing/linux-${version}.tar.xz"; - sha256 = "09bxkm0nl9vzlfb14500bl6zjzhgacy7y32b3mw1d9hx62yknk2f"; + sha256 = "0ia4lajpr3w9iivmwm2d7gqrpv97da5g4j8pkqa7q4mlr86jki2w"; }; features.iwlwifi = true; From 32616ae028627dbe12eca4a5199f51a4df0c8a90 Mon Sep 17 00:00:00 2001 From: Dario Bertini Date: Mon, 15 Jun 2015 19:45:49 +0100 Subject: [PATCH 44/90] Add pywinrm metadata --- pkgs/top-level/python-packages.nix | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 36cf8cefc48..8a34d67df11 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -10604,6 +10604,12 @@ let }; propagatedBuildInputs = with self; [ xmltodict isodate ]; + + meta = { + homepage = "http://github.com/diyan/pywinrm/"; + description = "Python library for Windows Remote Management"; + license = licenses.mit; + }; }); From ede08cec4d21fea80a4a1a15442ba7dd64694c4c Mon Sep 17 00:00:00 2001 From: Andrew Kelley Date: Sun, 14 Jun 2015 20:30:02 +0000 Subject: [PATCH 45/90] add libgroove package --- .../libraries/libgroove/default.nix | 22 +++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 ++ 2 files changed, 24 insertions(+) create mode 100644 pkgs/development/libraries/libgroove/default.nix diff --git a/pkgs/development/libraries/libgroove/default.nix b/pkgs/development/libraries/libgroove/default.nix new file mode 100644 index 00000000000..69545e4720c --- /dev/null +++ b/pkgs/development/libraries/libgroove/default.nix @@ -0,0 +1,22 @@ +{ stdenv, fetchFromGitHub, cmake, libav, SDL2, chromaprint, libebur128 }: + +stdenv.mkDerivation rec { + version = "4.3.0"; + name = "libgroove-${version}"; + + src = fetchFromGitHub { + owner = "andrewrk"; + repo = "libgroove"; + rev = "${version}"; + sha256 = "1la9d9kig50mc74bxvhx6hzqv0nrci9aqdm4k2j4q0s1nlfgxipd"; + }; + + buildInputs = [ cmake libav SDL2 chromaprint libebur128 ]; + + meta = with stdenv.lib; { + description = "Streaming audio processing library"; + homepage = https://github.com/andrewrk/libgroove; + license = licenses.mit; + platforms = platforms.unix; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index bcf02133be7..8764ee5c8be 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -6771,6 +6771,8 @@ let libgnurl = callPackage ../development/libraries/libgnurl { }; + libgroove = callPackage ../development/libraries/libgroove { }; + libseccomp = callPackage ../development/libraries/libseccomp { }; libsecret = callPackage ../development/libraries/libsecret { }; From e8dea0c5c20ffe107adad49fec5083c86b91167c Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Mon, 15 Jun 2015 21:34:30 +0200 Subject: [PATCH 46/90] fmit -> 1.0.0 --- pkgs/applications/audio/fmit/default.nix | 26 ++++++++++++++---------- 1 file changed, 15 insertions(+), 11 deletions(-) diff --git a/pkgs/applications/audio/fmit/default.nix b/pkgs/applications/audio/fmit/default.nix index ead15e9a918..a8acfbffb05 100644 --- a/pkgs/applications/audio/fmit/default.nix +++ b/pkgs/applications/audio/fmit/default.nix @@ -1,26 +1,30 @@ -{ stdenv, fetchurl, alsaLib, cmake, fftw, freeglut, jack2, libXmu, qt4 }: +{ stdenv, fetchFromGitHub, alsaLib, cmake, fftw +, freeglut, jack2, libXmu, qt4 }: -stdenv.mkDerivation rec { - version = "0.99.5"; +let version = "1.0.0"; in +stdenv.mkDerivation { name = "fmit-${version}"; - src = fetchurl { - url = "http://download.gna.org/fmit/${name}-Source.tar.bz2"; - sha256 = "1rc84gi27jmq2smhk0y0p2xyypmsz878vi053iqns21k848g1491"; + src = fetchFromGitHub { + sha256 = "13y9csv34flz7065kg69h99hd7d9zskq12inmkf34l4qjyk7c185"; + rev = "v${version}"; + repo = "fmit"; + owner = "gillesdegottex"; }; - # Also update longDescription when adding/removing sound libraries - buildInputs = [ alsaLib cmake fftw freeglut jack2 libXmu qt4 ]; + buildInputs = [ alsaLib fftw freeglut jack2 libXmu qt4 ]; + nativeBuildInputs = [ cmake ]; enableParallelBuilding = true; meta = with stdenv.lib; { + inherit version; description = "Free Musical Instrument Tuner"; longDescription = '' - Software for tuning musical instruments. Uses Qt as GUI library and - ALSA or JACK as sound input library. + FMIT is a graphical utility for tuning your musical instruments, with + error and volume history and advanced features. ''; - homepage = http://home.gna.org/fmit/index.html; + homepage = http://gillesdegottex.github.io/fmit/; license = licenses.gpl3Plus; platforms = with platforms; linux; maintainers = with maintainers; [ nckx ]; From 06d49aa69680871226496b5b16361f613b3cd518 Mon Sep 17 00:00:00 2001 From: Daiderd Jordan Date: Wed, 10 Jun 2015 17:20:27 +0200 Subject: [PATCH 47/90] vimPlugins.youcompleteme: use clang instead of clang-unwrapped on darwin --- pkgs/misc/vim-plugins/default.nix | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/pkgs/misc/vim-plugins/default.nix b/pkgs/misc/vim-plugins/default.nix index d693d9df857..e3016fc65f3 100644 --- a/pkgs/misc/vim-plugins/default.nix +++ b/pkgs/misc/vim-plugins/default.nix @@ -685,7 +685,8 @@ rec { dependencies = []; buildInputs = [ python cmake - llvmPackages.clang-unwrapped llvmPackages.llvm + (if stdenv.isDarwin then llvmPackages.clang else llvmPackages.clang-unwrapped) + llvmPackages.llvm ]; configurePhase = ":"; From b83d53e3558b3082a039640cfc1b88a117b32105 Mon Sep 17 00:00:00 2001 From: Arseniy Seroka Date: Tue, 16 Jun 2015 01:43:54 +0300 Subject: [PATCH 48/90] vimPlugins: 2015-06-16 update --- pkgs/misc/vim-plugins/default.nix | 130 ++++++++++++++++-------------- 1 file changed, 69 insertions(+), 61 deletions(-) diff --git a/pkgs/misc/vim-plugins/default.nix b/pkgs/misc/vim-plugins/default.nix index e3016fc65f3..28db4c343c1 100644 --- a/pkgs/misc/vim-plugins/default.nix +++ b/pkgs/misc/vim-plugins/default.nix @@ -35,13 +35,16 @@ rec { # Update with vimUtils.vimPlugins.pluginnames2Nix command # aliasess + "sourcemap.vim" = sourcemap; + Colour_Sampler_Pack = Colour-Sampler-Pack; + YouCompleteMe = youcompleteme; airline = vim-airline; alternative = a-vim; # backwards compat, added 2014-10-21 + calendar = calendar-vim; coffee-script = vim-coffee-script; coffeeScript = coffee-script; # backwards compat, added 2014-10-18 colors-solarized = Solarized; colorsamplerpack = Colour_Sampler_Pack; - Colour_Sampler_Pack = Colour-Sampler-Pack; command_T = command-t; # backwards compat, added 2014-10-18 easy-align = vim-easy-align; easymotion = vim-easymotion; @@ -52,36 +55,40 @@ rec { gundo = Gundo; haskellConceal = haskellconceal; # backwards compat, added 2014-10-18 haskellconceal = vim-haskellconceal; - hoogle = Hoogle; hier = vim-hier; + hoogle = Hoogle; ipython = vim-ipython; latex-live-preview = vim-latex-live-preview; necoGhc = neco-ghc; # backwards compat, added 2014-10-18 + neocomplete = neocomplete-vim; + neosnippet = neosnippet-vim; nerdcommenter = The_NERD_Commenter; nerdtree = The_NERD_tree; quickrun = vim-quickrun; signature = vim-signature; - "sourcemap.vim" = sourcemap; stylish-haskell = vim-stylish-haskell; stylishHaskell = stylish-haskell; # backwards compat, added 2014-10-18 supertab = Supertab; syntastic = Syntastic; tabular = Tabular; tagbar = Tagbar; + thumbnail = thumbnail-vim; tmux-navigator = vim-tmux-navigator; tmuxNavigator = tmux-navigator; # backwards compat, added 2014-10-18 + tslime = tslime-vim; + vimproc = vimproc-vim; + vimshell = vimshell-vim; watchdogs = vim-watchdogs; webapi-vim = WebAPI; yankring = YankRing; - YouCompleteMe = youcompleteme; Gist = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "Gist-2015-05-29"; + name = "Gist-2015-06-09"; src = fetchgit { url = "git://github.com/mattn/gist-vim"; - rev = "235955468c2d85e5d0ece46d84948acf2bedeb20"; - sha256 = "50ac95e145d00631acb3ae53261c880920b40b208fed1aaae71ed31d070e381e"; + rev = "c39e5e317d88da71da338c07af492c7a27efcf0a"; + sha256 = "97fa171cf239b54ee4ab102dd9f87810744bfa3edd34fe04d4dd8a879b22d5b4"; }; dependencies = []; @@ -132,11 +139,11 @@ rec { }; Syntastic = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "Syntastic-2015-05-29"; + name = "Syntastic-2015-06-12"; src = fetchgit { url = "git://github.com/scrooloose/syntastic"; - rev = "5c6e78a2711aa5d04d116123d78684b620033c3d"; - sha256 = "fa8781df0c37b5d120ab4b287a911a1545cd4342edf08f85d644097c50ff59b0"; + rev = "b8682c3029de5913e0a63a45e5f4d6f3b5e4920e"; + sha256 = "6ec2a6a3b4b3998612d21fcdccdb82799f8cf4022d6bc38e16f85ece8692d3a3"; }; dependencies = []; @@ -187,11 +194,11 @@ rec { }; UltiSnips = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "UltiSnips-2015-05-11"; + name = "UltiSnips-2015-06-11"; src = fetchgit { url = "git://github.com/sirver/ultisnips"; - rev = "188e00f7b87297ea7737f9494d531c7073637332"; - sha256 = "9fb127b32bd0e2ae139b3b6008849f4566cfb1c29087e787570428c770a3430c"; + rev = "c3a0924b777dbba2f8612950bd8f8a00df18d1bf"; + sha256 = "7ad0e5dc8e8713db38ef2875e5d512e6cf8ef3dd7885ce12aff22052da780593"; }; dependencies = []; @@ -269,11 +276,11 @@ rec { }; fugitive = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "fugitive-2015-05-31"; + name = "fugitive-2015-06-14"; src = fetchgit { url = "git://github.com/tpope/vim-fugitive"; - rev = "e065e4f841f4a033ac9a6156573a446007617b1d"; - sha256 = "339e2418da5f7e04490e6732010abd2f287c935e7a20df5832611f94ed42013f"; + rev = "1c844375fa2762e3b7c16294fa36afee6fef28b1"; + sha256 = "fa02d055243a386fe3fdb5069f36d3f035ace3594c1b1dd4a4bbc61df232fb97"; }; dependencies = []; @@ -291,11 +298,11 @@ rec { }; vim-addon-vim2nix = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-addon-vim2nix-2015-06-01"; + name = "vim-addon-vim2nix-2015-06-16"; src = fetchgit { url = "git://github.com/JagaJaga/vim-addon-vim2nix"; - rev = "cfa1f191b9e427dee77f8054a911a327c3cf4f79"; - sha256 = "9960dd3248ffc8d2d3b9bf322df2369feb7a6bf54d47253bd65de1988d2e5ec3"; + rev = "046702653f7af5829a3f3fda3b7cf89c2a8d03b5"; + sha256 = "b92068c32ce14e75159070acbd86c52e09aaa65a523fd566e44762ed33403161"; }; dependencies = ["vim-addon-manager"]; @@ -467,22 +474,22 @@ rec { }; vim-eighties = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-eighties-2015-04-16"; + name = "vim-eighties-2015-06-15"; src = fetchgit { url = "git://github.com/justincampbell/vim-eighties"; - rev = "d202e6015163bbb4f7c9973f2eac66c2351e8c24"; - sha256 = "ad7341c8d7ab659b062a67f893962b08596466a6a3a3395f28a4f4031a36eb9c"; + rev = "68dc644664bf569e96ac91f79fdf828e89d70e02"; + sha256 = "d6600665179395141d660c65dad3e03c13aeba164a6c1e6fabfc9e2499588132"; }; dependencies = []; }; latex-box = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "latex-box-2015-05-16"; + name = "latex-box-2015-06-01"; src = fetchgit { url = "git://github.com/latex-box-team/latex-box"; - rev = "55a88ed55a7631b91321916cf80c47077d478c9c"; - sha256 = "96203a95d919db65574e187b793a7d846463d91fe641349732cc5d9aeb8242ac"; + rev = "3c2901e12cb78bfb2be58ba4c62a488612550fe1"; + sha256 = "8af2c45209c39438da8481183a1f14885891db73454bb4b16d24799453184e81"; }; dependencies = []; @@ -517,11 +524,11 @@ rec { rev = "0854ac6a810daae4a5c99bcae61613266ce75c26"; sha256 = "886a173d48340ad0ddeb3c852e4f2bdfc7b513a9d5a954115d081a3e276fa655"; }; + dependencies = []; patchPhase = '' substituteInPlace plugin/xkbswitch.vim \ --replace /usr/local/lib/libxkbswitch.so ${xkb_switch}/lib/libxkbswitch.so ''; - dependencies = []; buildInputs = [ xkb_switch ]; }; @@ -548,22 +555,22 @@ rec { }; vim-watchdogs = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-watchdogs-2015-04-16"; + name = "vim-watchdogs-2015-06-15"; src = fetchgit { url = "git://github.com/osyo-manga/vim-watchdogs"; - rev = "5e3d1db592297f7d4c563900a6d224ff559f533e"; - sha256 = "3d4c9624d86815dd47d7655eb58a703574f2ecb92238ae4e65dc67fc9960820a"; + rev = "7dd19b1344e6bb89ecd469b085ad945435905eb9"; + sha256 = "8481b5e0efffec520f66920aaf3f2da843c01c70688a4c71f7b31ead8d4049d1"; }; dependencies = []; }; racer = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "racer-2015-06-01"; + name = "racer-2015-06-15"; src = fetchgit { url = "git://github.com/phildawes/racer"; - rev = "7425ae5299ed3f89817945fd867403e825070df6"; - sha256 = "0721528de38e179ab887ccb06339dabcc5aa43c564f47fa06a372ace6e9ba457"; + rev = "dd0671b8d6e66e3e503bd7049561fb08e7815ed3"; + sha256 = "ec996e7cbf46aec545b70781108f4290dacecd02b599a0d13b8b0cf431205403"; }; dependencies = []; buildPhase = '' @@ -573,33 +580,33 @@ rec { }; neocomplete-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "neocomplete-vim-2015-05-26"; + name = "neocomplete-vim-2015-06-15"; src = fetchgit { url = "git://github.com/shougo/neocomplete.vim"; - rev = "0a8a7e8a72a23459c2eda5116fe9b22b0dad7a3e"; - sha256 = "fe75653939e1299b71708a26a9af2ca1e4ac0f1daed8aa98ce46b8bb26c9bd71"; + rev = "15c6a63ca8807493df273c77be0754f44d68d30b"; + sha256 = "1a2a30da610e5f252bbe43717cf2cad76b8b09916c2082541fc3bb456b9b97a9"; }; dependencies = []; }; neosnippet-snippets = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "neosnippet-snippets-2015-05-28"; + name = "neosnippet-snippets-2015-06-11"; src = fetchgit { url = "git://github.com/shougo/neosnippet-snippets"; - rev = "842622af4ce0e559ba64f4b991d0de8b9cade6af"; - sha256 = "5d9a3c2d06edb3146e0dbdbba7d8c411197914bea8192844a3c849987e23a72a"; + rev = "522c38e28949ae53af8c96d7bcbda192b92e3656"; + sha256 = "ff0c09fb5a70e011cb7570951a67ef0253f544b3f61c8e7741d65d27b4d418c1"; }; dependencies = []; }; neosnippet-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "neosnippet-vim-2015-05-12"; + name = "neosnippet-vim-2015-06-13"; src = fetchgit { url = "git://github.com/shougo/neosnippet.vim"; - rev = "e2c830db87e50e8cdb1128f3096664f68cb05cad"; - sha256 = "bc950c1756d3c276dc231563749a9fbe7de0d5595e30428e1408bb530bc61e6f"; + rev = "3cfe8368cfccffdeab660ca1019696e0fd1aa944"; + sha256 = "049555be6a2aedee7fffc583d43c0cbe3aecc2f0efcf6cfab826e30b2e83f2fd"; }; dependencies = []; @@ -676,11 +683,11 @@ rec { }; youcompleteme = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "youcompleteme-2015-05-29"; + name = "youcompleteme-2015-06-12"; src = fetchgit { url = "git://github.com/valloric/youcompleteme"; - rev = "c2d962dddb4cc86f771722e9775d2345d31fe8bb"; - sha256 = "2543d42662e99401ac8b4ff938fe5452b6d0215befc155e9b24590533a4bfe06"; + rev = "d77ef96ebcca90381f38604d7fb2e90da91bd503"; + sha256 = "7a794986eebd8fa952be3dc903588d124dd14377a07bff1b877279c3b7d498f9"; }; dependencies = []; buildInputs = [ @@ -733,7 +740,7 @@ rec { }; a-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "a-vim-git-2010-11-06"; + name = "a-vim-2010-11-06"; src = fetchgit { url = "git://github.com/vim-scripts/a.vim"; rev = "2cbe946206ec622d9d8cf2c99317f204c4d41885"; @@ -744,7 +751,7 @@ rec { }; align = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "align-git-2012-08-07"; + name = "align-2012-08-07"; src = fetchgit { url = "git://github.com/vim-scripts/align"; rev = "787662fe90cd057942bc5b682fd70c87e1a9dd77"; @@ -766,11 +773,11 @@ rec { }; vim-wakatime = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-wakatime-2015-05-31"; + name = "vim-wakatime-2015-06-11"; src = fetchgit { url = "git://github.com/wakatime/vim-wakatime"; - rev = "1e2ba90f708965719ed52c4ea2728bc3cfa32f6d"; - sha256 = "ebd5a651554742727944f4a705ccbe990875d4ed656fc535183474091bcf1f1c"; + rev = "b2dcc7ccc2247274fe63168952de5db595a01e1c"; + sha256 = "883f92fcd45a824009e613d8a527effd1eac8bef0fe4299c0df366376afb6273"; }; dependencies = []; buildInputs = [ python ]; @@ -904,11 +911,11 @@ rec { }; table-mode = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "table-mode-2015-04-21"; + name = "table-mode-2015-06-05"; src = fetchgit { url = "git://github.com/dhruvasagar/vim-table-mode"; - rev = "cc723fe8cdab054f325292c288103229b0193147"; - sha256 = "4daee279dc4e9c48af41a70bc45385136fa02546bdc8525f68ce44404db7a84a"; + rev = "5395c9f52b91ae6083fd7b26577b8f926da6871e"; + sha256 = "784e51f7144790fcfad83c2dc5c7f250608826ce48706b80c41f88fa04914ae2"; }; dependencies = []; @@ -1167,11 +1174,11 @@ rec { }; vim-airline = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-airline-2015-05-25"; + name = "vim-airline-2015-06-09"; src = fetchgit { url = "git://github.com/bling/vim-airline"; - rev = "67de5f2257f8d5def7a31e3009d4298ce977cb80"; - sha256 = "0ca13f68b22ce3112117d7194f3d6b4e1280f032bc7bbca6fba4df185ff1da2a"; + rev = "b29e01fa22ee8b8eb02cf505382a90b045b4bc64"; + sha256 = "e943dd5900d4d49a6f7dd02434b394167a3802d68d17072fc767552a9fd16001"; }; dependencies = []; @@ -1200,11 +1207,11 @@ rec { }; vim-gista = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-gista-2015-01-29"; + name = "vim-gista-2015-06-04"; src = fetchgit { url = "git://github.com/lambdalisue/vim-gista"; - rev = "e450417a6eaeb99d3982b880507697dce85b7217"; - sha256 = "a7665dbc63a35d1fe9b7679a498deafb80c8dfb05fced37ac4722212c673f2ec"; + rev = "ffe85c0438cf5ad76b07ddb6524de3803c2bfdba"; + sha256 = "9f44d07a4f36fb4559c99a655501b3752e180458de9d76d1cb293abd0f990fb4"; }; dependencies = []; @@ -1255,11 +1262,11 @@ rec { }; vim-snippets = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-snippets-2015-05-31"; + name = "vim-snippets-2015-06-08"; src = fetchgit { url = "git://github.com/honza/vim-snippets"; - rev = "0e9eff1bf36728b6423171f962a8d6e5de7a4621"; - sha256 = "0d2342a184806ba9357871ef77229a29854a665fd4e75674638136d2054c0551"; + rev = "69c918175c77c0a0516c3ab587509a3eca38b3ae"; + sha256 = "1fe9c6d5f80513bc35c309723b57d73d42296fbe73d44c0df1de4244b2596bf0"; }; dependencies = []; @@ -1302,4 +1309,5 @@ rec { }; + } From 82ec18463dad6997eb6a66225f0c8017e867b105 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Tue, 16 Jun 2015 03:12:30 +0200 Subject: [PATCH 49/90] Add dfasma 1.0.1: analyse/compare audio files --- pkgs/applications/audio/dfasma/default.nix | 43 ++++++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 + 2 files changed, 45 insertions(+) create mode 100644 pkgs/applications/audio/dfasma/default.nix diff --git a/pkgs/applications/audio/dfasma/default.nix b/pkgs/applications/audio/dfasma/default.nix new file mode 100644 index 00000000000..0dda6e3dabd --- /dev/null +++ b/pkgs/applications/audio/dfasma/default.nix @@ -0,0 +1,43 @@ +{ stdenv, fetchFromGitHub, fftw, libsndfile, qt5 }: + +let version = "1.0.1"; in +stdenv.mkDerivation { + name = "dfasma-${version}"; + + src = fetchFromGitHub { + sha256 = "16m6jnr49j525xxqiwmwni07rcdg92p0dcznd5bmzz34xsm0cbiz"; + rev = "v${version}"; + repo = "dfasma"; + owner = "gillesdegottex"; + }; + + meta = with stdenv.lib; { + inherit version; + description = "Analyse and compare audio files in time and frequency"; + longDescription = '' + DFasma is free open-source software to compare audio files by time and + frequency. The comparison is first visual, using wavforms and spectra. It + is also possible to listen to time-frequency segments in order to allow + perceptual comparison. It is basically dedicated to analysis. Even though + there are basic functionalities to align the signals in time and + amplitude, this software does not aim to be an audio editor. + ''; + homepage = http://gillesdegottex.github.io/dfasma/; + license = licenses.gpl3Plus; + platforms = with platforms; linux; + maintainers = with maintainers; [ nckx ]; + }; + + buildInputs = [ fftw libsndfile qt5.base qt5.multimedia ]; + + configurePhase = '' + qmake DESTDIR=$out/bin dfasma.pro + ''; + + enableParallelBuilding = true; + + postInstall = '' + install -Dm644 distrib/dfasma.desktop $out/share/applications/dfasma.desktop + install -Dm644 icons/dfasma.png $out/share/pixmaps/dfasma.png + ''; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 8764ee5c8be..77268cb088f 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -10757,6 +10757,8 @@ let pulseSupport = config.pulseaudio or true; }; + dfasma = callPackage ../applications/audio/dfasma { }; + dia = callPackage ../applications/graphics/dia { inherit (pkgs.gnome) libart_lgpl libgnomeui; }; From 368e381d1f0fc463fb43b2868c8f48772a4b97e0 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Tue, 16 Jun 2015 03:34:41 +0200 Subject: [PATCH 50/90] python-packages: prompt_toolkit -> 0.40 Fixes: - Fix in output_screen_diff: reset correctly. - Ignore flush errors in vt100_output. - Implemented gg Vi key binding. - Bug fix in the renderer when the style changes. New features: - TokenListControl can now display the cursor somewhere. - Added SwitchableValidator class. - print_tokens function added. - get_style argument for Application added. - KeyBindingManager got an enable_all argument. Backwards incompatible changes: - history_search is now a SimpleFilter instance. --- pkgs/top-level/python-packages.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index f80df2edfcb..7e01bda11c8 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -8868,11 +8868,11 @@ let prompt_toolkit = buildPythonPackage rec { name = "prompt_toolkit-${version}"; - version = "0.39"; + version = "0.40"; src = pkgs.fetchurl { + sha256 = "0zyp2zpbckpdhapijvg7jwli71ilhp02awn99ly70q3l1f44m9dj"; url = "https://pypi.python.org/packages/source/p/prompt_toolkit/${name}.tar.gz"; - sha256 = "1046fhgqd1171n8xyzcxwzcxgkcwa77r08g7iih8k5x7z59l94lb"; }; buildInputs = with self; [ jedi ipython pygments ]; From a2a69400a47aca17daacb694bd8ce46d91d25007 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Cillian=20de=20R=C3=B3iste?= Date: Tue, 16 Jun 2015 11:30:20 +0200 Subject: [PATCH 51/90] jmtpfs: add platform --- pkgs/tools/filesystems/jmtpfs/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/tools/filesystems/jmtpfs/default.nix b/pkgs/tools/filesystems/jmtpfs/default.nix index 2a2ff0a47a5..091270deab6 100644 --- a/pkgs/tools/filesystems/jmtpfs/default.nix +++ b/pkgs/tools/filesystems/jmtpfs/default.nix @@ -17,6 +17,7 @@ stdenv.mkDerivation { description = "A FUSE filesystem for MTP devices like Android phones"; homepage = https://github.com/JasonFerrara/jmtpfs; license = licenses.gpl3; + platforms = platforms.linux; maintainers = [ maintainers.coconnor ]; }; } From c9743be4458728ed803e00f2cc93b1a6594fd887 Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 10:59:52 +0200 Subject: [PATCH 52/90] nlopt: broken by recent octave 4.x update See http://hydra.cryp.to/build/932458/nixlog/1/raw for a complete build log. The issue is known upstream at https://github.com/stevengj/nlopt/issues/33. --- pkgs/development/libraries/nlopt/default.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pkgs/development/libraries/nlopt/default.nix b/pkgs/development/libraries/nlopt/default.nix index ad194437727..080f09dfdf4 100644 --- a/pkgs/development/libraries/nlopt/default.nix +++ b/pkgs/development/libraries/nlopt/default.nix @@ -20,9 +20,9 @@ stdenv.mkDerivation rec { homepage = "http://ab-initio.mit.edu/nlopt/"; description = "Free open-source library for nonlinear optimization"; license = stdenv.lib.licenses.lgpl21Plus; - hydraPlatforms = stdenv.lib.platforms.linux; maintainers = [ stdenv.lib.maintainers.simons ]; + broken = true; # cannot cope with Octave 4.x }; } From d4c810cccda570df54adcc51329f07dca69db65a Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 10:44:52 +0200 Subject: [PATCH 53/90] r-modules: disable broken packages to avoid Hydra evaluation errors --- pkgs/development/r-modules/default.nix | 278 ++++++++++++++++++++++++- 1 file changed, 273 insertions(+), 5 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 2f8c22fe865..34e50d08413 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -649,97 +649,191 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ + "abd" # requires nlopt "ACNE" # requires aroma_affymetrix "Actigraphy" # SDMTools.so: undefined symbol: X + "adabag" # requires nlopt "adaptsmoFMRI" # requires spatstat "ads" # requires spatstat + "AER" # REQUIRES NLOPT + "afex" # requires nlopt + "agRee" # requires nlopt "agridat" # requires pcaMethods "aLFQ" # requires protiq + "alr3" # requires nlopt + "alr4" # requires nlopt + "anacor" # requires nlopt "AntWeb" # requires leafletR + "aods3" # requires nlopt "aoristic" # requires spatstat "apmsWAPP" # requires genefilter, Biobase, multtest, edgeR, DESeq, and aroma.light + "apt" # requires nlopt + "ArfimaMLM" # Requires Nlopt + "arm" # requires nlopt "aroma_affymetrix" # requires aroma_core "aroma_cn" # requires PSCBS "aroma_core" # requires PSCBS "ArrayBin" # requires SAGx + "ARTool" # Requires Nlopt "babel" # requires edgeR "BACA" # requires RDAVIDWebService + "backShift" # requires pcalg to build + "bartMachine" # requires nlopt + "bayesDem" # requires nlopt + "bayesLife" # requires nlopt + "bayesPop" # requires nlopt + "Bayesthresh" # Requires Nlopt + "BBRecapture" # Requires Nlopt + "BCA" # REQUIRES NLOPT "BcDiag" # requires fabia "bdvis" # requres taxize "beadarrayFilter" # requires beadarray "beadarrayMSV" # requires Biobase, geneplotter, andlimma + "bgmm" # requires nlopt + "BIFIEsurvey" # requires DiagrammeR to build "bigGP" # requires MPI running. HELP WANTED! "bigpca" # requires NCmisc + "BiodiversityR" # Requires Nlopt "Biograph" # requires mvna "biotools" # requires rpanel "BiSEp" # requires GOSemSim, GO.db, and org.Hs.eg.db "BLCOP" # depends on broken fPortfolio + "blmeco" # requires nlopt + "blme" # requires nlopt + "bmd" # requires nlopt + "bmem" # requires DiagrammeR to build "bmrm" # requires clpAPI + "bootnet" # requires IsingFit + "boss" # requires nlopt + "BradleyTerry2" # Requires Nlopt "branchLars" # requires Rgraphviz "BRugs" # requires OpenBUGS + "CADFtest" # Requires Nlopt + "cAIC4" # requires nlopt "calmate" # requires aroma_core + "candisc" # requires nlopt + "carcass" # requires nlopt + "caretEnsemble" # requires nlopt + "caret" # requires nlopt "CARrampsOcl" # depends on OpenCL + "car" # requires nlopt + "CCpop" # Requires Nlopt + "ChainLadder" # Requires Nlopt "CHAT" # requires DNAcopy "ChemoSpec" # depends on broken speaq "classGraph" # requires graph, and Rgraphviz + "climwin" # requires nlopt + "CLME" # REQUIRES NLOPT "clpAPI" # requires clp + "clusterPower" # requires nlopt "compendiumdb" # requires Biobase + "conformal" # requires nlopt + "corHMM" # requires nlopt "CORM" # requires limma + "CosmoPhotoz" # Requires Nlopt + "cp4p" # build is broken "cplexAPI" # requires CPLEX "crmn" # requires pcaMethods, and Biobase "Crossover" # fails self-test "CrypticIBDcheck" # requires rJPSGCS "cudaBayesreg" # requres Rmath + "curl" # build is broken "curvHDR" # requires flowCore "D2C" # requires gRbase "DAAGbio" # requires limma "daff" # requires V8 to build "dagbag" # requires Rlapack + "DAMisc" # Requires Nlopt "DBKGrad" # requires SDD "dbmss" # requires spatstat "DCGL" # requires limma "dcGOR" # requires dnet + "DeducerExtras" # Requires Nlopt + "DeducerPlugInExample" # Requires Nlopt + "DeducerPlugInScaling" # Requires Nlopt + "Deducer" # Requires Nlopt + "DeducerSpatial" # Requires Nlopt + "DeducerSurvival" # Requires Nlopt + "DeducerText" # Requires Nlopt "demi" # requires affy, affxparser, and oligo "DepthProc" # requires samr "DiagrammeR" # requires V8 to build + "DiagTest3Grp" # Requires Nlopt "DiffCorr" # misses undeclared dependencies 'pcaMethods', 'multtest' + "difR" # requires nlopt "Digiroo2" # requires spatstat + "discSurv" # requires nlopt + "DistatisR" # Requires Nlopt + "diveRsity" # requires DiagrammeR to build "dixon" # requires spatstat "dnet" # requires supraHex, graph, Rgraphviz, and Biobase "doMPI" # requires MPI running. HELP WANTED! + "dpa" # requires DiagrammeR to build "dpcR" # requires spatstat + "drc" # requires nlopt + "drfit" # requires nlopt + "drsmooth" # requires nlopt "DSpat" # requires spatstat + "dynlm" # requires nlopt + "easyanova" # requires nlopt "ecespa" # requires spatstat "ecoengine" # requires leafletR "ecospat" # requires spatstat "edgeRun" # requires edgeR + "eeptools" # requires nlopt + "EffectLiteR" # Requires Nlopt + "effects" # requires nlopt "EMA" # requires siggenes, affy, multtest, gcrma, biomaRt, and AnnotationDbi "empiricalFDR_DESeq2" # requires DESeq2, and GenomicRanges + "EnQuireR" # Requires Nlopt + "episplineDensity" # requires nlopt "epoc" # requires graph, and Rgraphviz + "epr" # requires nlopt + "erer" # requires nlopt "erpR" # requires rpanel "ETAS" # requires spatstat "eulerian" # requires graph "evobiR" # requres taxiz "evora" # requires qvalue "ExomeDepth" # requires GenomicRanges, and Rsamtools + "extRemes" # requires nlopt + "ez" # requires nlopt + "FactoMineR" # Requires Nlopt + "Factoshiny" # Requires Nlopt "FAMT" # requires impute + "faoutlier" # requires DiagrammeR to build + "fastR" # requires nlopt "fdrDiscreteNull" # requires edgeR + "FDRreg" # Requires Nlopt "FHtest" # requires interval "flexCWM" # depends on broken mixture "fPortfolio" # requires rneos + "freqweights" # requires nlopt + "fscaret" # requires nlopt "FunctionalNetworks" # requires breastCancerVDX, and Biobase + "fxregime" # requires nlopt + "gamclass" # requires nlopt "gamlss_demo" # requires rpanel + "gamm4" # requires nlopt + "gcmr" # requires nlopt + "GDAtools" # Requires Nlopt "GeneticTools" # requires snpStats + "genridge" # requires nlopt "geojsonio" # requires V8 to build "GExMap" # requires Biobase and multtest + "gimme" # requires DiagrammeR to build "gitter" # requires EBImage "glmgraph" # test suite says: "undefined symbol: dgemv_" "gmatrix" # depends on proprietary cudatoolkit "gMCP" # fails self-test "GOGANPA" # requires WGCNA + "gplm" # requires nlopt "gputools" # depends on proprietary cudatoolkit "gRain" # requires gRbase + "granova" # requires nlopt "gRapHD" # requires graph + "graphicalVAR" # requires DiagrammeR to build + "GraphPCA" # Requires Nlopt "gRbase" # requires RBGL, and graph "gRc" # requires gRbase "gridDebug" # requires gridGraphviz @@ -748,51 +842,101 @@ let "gRim" # requires gRbase "GSAgm" # requires edgeR "GUIDE" # requires rpanel + "GWAF" # REQUIRES NLOPT "h2o" # tries to download some h2o.jar during its build + "h5" # depends on missing h5 system library "hasseDiagram" # requires Rgraphviz + "hbsae" # requires nlopt "hddplot" # requires multtest + "heplots" # requires nlopt + "HH" # REQUIRES NLOPT "HierO" # requires rneos "HiPLARM" # requires MAGMA or PLASMA + "HistDAWass" # Requires Nlopt + "HLMdiag" # Requires Nlopt "hpoPlot" # requires Rgraphviz "hsdar" # fails to build "HTSCluster" # requires edgeR + "hysteresis" # requires nlopt + "IATscores" # requires DiagrammeR to build + "ibd" # requires nlopt + "iccbeta" # requires nlopt "iFes" # depends on proprietary cudatoolkit "imputeLCMD" # requires pcaMethods, and impute + "imputeR" # requires nlopt + "in2extRemes" # requires nlopt + "incReg" # requires nlopt + "inferference" # requires nlopt + "influence_ME" # requires nlopt "intamapInteractive" # requires spatstat "interval" # requires Icens "ionflows" # requires Biostrings "iRefR" # requires graph, and RBGL + "IsingFit" # requires DiagrammeR to build "IsoGene" # requires Biobase, and affy "isva" # requires qvalue + "ivpack" # requires nlopt + "JAGUAR" # REQUIRES NLOPT "jomo" # linking errors "js" # requires broken V8 "KANT" # requires affy, and Biobase "ktspair" # requires Biobase "latticeDensity" # requires spatstat + "lawn" # requires DiagrammeR to build + "lawn" # requires V8 to build "leapp" # requires sva + "learnstats" # requires nlopt "lefse" # SDMTools.so: undefined symbol: X + "lessR" # requires nlopt "lfe" # fails to compile "lgcp" # requires rpanel "LinRegInteractive" # requires Rpanel + "lme4" # requires nlopt + "LMERConvenienceFunctions" # Requires Nlopt + "lmerTest" # requires nlopt + "lmSupport" # requires nlopt "LogisticDx" # requires gRbase + "longpower" # requires nlopt "LOST" # requires pcaMethods "ltsk" # requires Rlapack and Rblas - "magma" # requires MAGMA "MAMA" # requires metaMA + "marked" # requires nlopt + "MaxPro" # Requires Nlopt + "mbest" # requires nlopt + "meboot" # requires nlopt "MEET" # requires pcaMethods, and seqLogo + "MEMSS" # REQUIRES NLOPT "metabolomics" # depends on broken crmn "MetaDE" # requires impute, and Biobase + "metagear" # build is broken "MetaLandSim" # requires Biobase "metaMA" # requires limma "metaMix" # requires MPI running. HELP WANTED! + "metaplus" # requires nlopt + "metaSEM" # requires OpenMx + "Metatron" # Requires Nlopt "mGSZ" # requires Biobase, and limma + "miceadds" # requires DiagrammeR to build + "micEconAids" # requires nlopt + "micEconCES" # requires nlopt + "micEconSNQP" # requires nlopt "MigClim" # SDMTools.So: Undefined Symbol: X + "migui" # requires nlopt "minimist" # requires broken V8 + "mi" # requires nlopt "miRtest" # requires globaltest, GlobalAncova, and limma + "missMDA" # requires nlopt + "mixAK" # requires nlopt "MixGHD" # requires mixture to build + "mixlm" # requires nlopt + "MixMAP" # Requires Nlopt "mixture" # mixture.so: undefined symbol: dtrmm_ + "mlmRev" # requires nlopt + "mlVAR" # requires DiagrammeR to build + "MM2S" # BUILD IS BROKEN "moduleColor" # requires impute "mongolite" # doesn't find OpenSSL + "mosaic" # requires nlopt "msarc" # requires AnnotationDbi "MSeasy" # requires mzR, and xcms "MSeasyTkGUI" # requires MSeasyTkGUI @@ -800,106 +944,209 @@ let "msSurv" # requires graph "muir" # requires DiagrammeR to build "multiDimBio" # requires pcaMethods + "MultiRR" # Requires Nlopt + "muma" # requires nlopt "mutossGUI" # requires mutoss "mutoss" # requires multtest + "mvinfluence" # requires nlopt "MXM" # depends on broken gRbase "NBPSeq" # requires qvalue + "nCal" # requires nlopt "NCmisc" # requires BiocInstaller "netClass" # requires samr "nettools" # requires WGCNA "netweavers" # requires BiocGenerics, Biobase, and limma + "NHPoisson" # Requires Nlopt + "nloptr" # requires nlopt "NLPutils" # requires qdap + "nonrandom" # requires nlopt "NORRRM" # can't load SDMTools properly + "npIntFactRep" # requires nlopt "NSA" # requires aroma_core "OpenCL" # FIXME: requires CL/opencl.h + "OpenMx" # Build Is Broken "optBiomarker" # requires rpanel "ora" # requires ROracle + "ordBTL" # requires nlopt "orQA" # requires genefilter + "OUwie" # Requires Nlopt "PairViz" # requires graph + "pamm" # requires nlopt "PANDA" # requires GO.db + "pander" # build is broken + "panelAR" # requires nlopt + "papeR" # requires nlopt + "parboost" # requires nlopt "ParDNAcopy" # requires DNAcopy + "parma" # requires nlopt "pathClass" # requires affy, and Biobase "PatternClass" # SDMTools.So: Undefined Symbol: X "pbdBASE" # requires pbdMPI "pbdDEMO" # requires pbdMPI "pbdDMAT" # requires pbdMPI "pbdSLAP" # requires pbdMPI + "PBImisc" # Requires Nlopt + "pbkrtest" # requires nlopt "PBSddesolve" # fails its test suite for unclear reasons "PBSmapping" # fails its test suite for unclear reasons "pcaL1" # requires clp "pcalg" # requires graph, and RBGL "PCGSE" # requires safe "PCS" # requires multtest + "pedigreemm" # requires nlopt + "pedometrics" # requires nlopt "PepPrep" # requires biomaRt + "pequod" # requires nlopt "PerfMeas" # requires limma, graph, and RBGL "permGPU" # requires Biobase + "phia" # requires nlopt "PhViD" # requires LBE + "phylocurve" # requires nlopt + "phyloTop" # requires nlopt "pi0" # requires qvalue "plmDE" # requires limma + "plsRbeta" # requires nlopt "plsRcox" # requires survcomp + "plsRglm" # requires nlopt "PMA" # requires impute "pmcgd" # depends on broken mixture "pmclust" # requires MPI running. HELP WANTED! "polyCub" # requires spatstat + "polytomous" # requires nlopt + "pomp" # requires nlopt "ppiPre" # requires AnnotationDbi, GOSemSim, GO.db + "predictmeans" # requires nlopt "pRF" # requires multtest + "prLogistic" # requires nlopt "propOverlap" # requires Biobase "protiq" # requires graph, and RBGL + "PSAboot" # Requires Nlopt "PSCBS" # requires DNAcopy "pubmed_mineR" # requires SSOAP "PubMedWordcloud" # requires GOsummaries "qdap" # requires gender + "qgraph" # requires DiagrammeR to build + "qtbase" # build is broken "qtlnet" # requires pcalg "qtpaint" # can't find QtCore libraries + "qtutils" # requires qtbase "QuACN" # requires graph, RBGL "quanteda" # fails to build + "quantification" # requires nlopt "QuasiSeq" # requires edgeR + "R2STATS" # REQUIRES NLOPT "RADami" # requires Biostrings + "radiant" # requires nlopt "raincpc" # SDMTools.so: undefined symbol: X "rainfreq" # SDMTools.so: undefined symbol: X "RAM" # requires Heatplus "RapidPolygonLookup" # depends on broken PBSmapping "RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges + "rasclass" # requires nlopt "RbioRXN" # requires fmcsR, and KEGGREST + "RcmdrMisc" # Requires Nlopt + "RcmdrPlugin_BCA" # Requires Nlopt + "RcmdrPlugin_coin" # requires nlopt + "RcmdrPlugin_depthTools" # requires nlopt + "RcmdrPlugin_DoE" # Requires Nlopt + "RcmdrPlugin_doex" # requires nlopt + "RcmdrPlugin_EACSPIR" # Requires Nlopt + "RcmdrPlugin_EBM" # Requires Nlopt + "RcmdrPlugin_EcoVirtual" # Requires Nlopt + "RcmdrPlugin_epack" # requires nlopt + "RcmdrPlugin_EZR" # Requires Nlopt + "RcmdrPlugin_FactoMineR" # Requires Nlopt + "RcmdrPlugin_HH" # Requires Nlopt + "RcmdrPlugin_IPSUR" # Requires Nlopt + "RcmdrPlugin_KMggplot2" # Requires Nlopt + "RcmdrPlugin_lfstat" # requires nlopt + "RcmdrPlugin_MA" # Requires Nlopt + "RcmdrPlugin_mosaic" # requires nlopt + "RcmdrPlugin_MPAStats" # Requires Nlopt + "RcmdrPlugin_NMBU" # Requires Nlopt + "RcmdrPlugin_orloca" # requires nlopt + "RcmdrPlugin_plotByGroup" # requires nlopt + "RcmdrPlugin_pointG" # requires nlopt + "RcmdrPlugin_qual" # requires nlopt + "RcmdrPlugin_RMTCJags" # Requires Nlopt + "RcmdrPlugin_ROC" # Requires Nlopt + "RcmdrPlugin_sampling" # requires nlopt + "RcmdrPlugin_SCDA" # Requires Nlopt "RcmdrPlugin_seeg" # requires seeg + "RcmdrPlugin_SLC" # Requires Nlopt + "RcmdrPlugin_SM" # Requires Nlopt + "RcmdrPlugin_sos" # requires nlopt + "RcmdrPlugin_StatisticalURV" # Requires Nlopt + "RcmdrPlugin_steepness" # requires nlopt + "RcmdrPlugin_survival" # requires nlopt + "RcmdrPlugin_TeachingDemos" # Requires Nlopt + "RcmdrPlugin_temis" # requires nlopt + "RcmdrPlugin_UCA" # Requires Nlopt + "Rcmdr" # Requires Nlopt "Rcplex" # requires cplexAPI "RcppAPT" # configure script depends on /bin/sh + "RcppOctave" # Build Is Broken "RcppRedis" # requires Hiredis + "rdd" # requires nlopt "rDEA" # no such file or directory "RDieHarder" # requires libdieharder "reader" # requires NCmisc "REBayes" # requires Rmosek + "referenceIntervals" # requires nlopt "RefFreeEWAS" # requires isva + "refund" # requires nlopt + "REST" # REQUIRES NLOPT "retistruct" # depends on broken RImageJROI + "rgbif" # requires V8 to build "rgp" # fails self-test "rgpui" # depends on broken rgp "RImageJROI" # requires spatstat "rjade" # requires V8 to build "rJPSGCS" # requires chopsticks "rLindo" # requires LINDO API + "rmgarch" # requires nlopt + "rminer" # requires nlopt "Rmosek" # requires mosek "RnavGraph" # requires graph, and RBGL "rneos" # requires XMLRPC "RNeXML" # requres taxize "RobLoxBioC" # requires Biobase "RobLox" # requires Biobase + "robustlmm" # requires nlopt + "rockchalk" # requires nlopt "RockFab" # requires EBImage "ROI_plugin_symphony" # depends on broken Rsymphony "ROracle" # requires OCI "rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED! + "rpubchem" # requires nlopt "RQuantLib" # requires QuantLib + "rr" # requires nlopt "RSAP" # requires SAPNWRFCSDK + "rscala" # build is broken + "RSDA" # REQUIRES NLOPT "RSeed" # requires RBGL, and graph "rsig" # requires survcomp "RSNPset" # requires qvalue "Rsymphony" # FIXME: requires SYMPHONY + "rugarch" # requires nlopt + "RVAideMemoire" # Requires Nlopt + "RVFam" # Requires Nlopt "RVideoPoker" # requires Rpanel + "ryouready" # requires nlopt "rysgran" # requires soiltexture + "sampleSelection" # requires nlopt "samr" # requires impute + "sdcMicroGUI" # requires nlopt + "sdcMicro" # requires nlopt "SDD" # requires rpanel "seeg" # requires spatstat "selectspm" # depends on broken ecespa + "semdiag" # requires DiagrammeR to build + "semGOF" # requires DiagrammeR to build "semiArtificial" # requires RSNNS + "semPlot" # requires DiagrammeR to build + "sem" # requires DiagrammeR to build + "SensoMineR" # Requires Nlopt "SeqFeatR" # requires Biostrings, qvalue, and widgetTools "SeqGrapheR" # depends on Biostrings "sequenza" # requires copynumber @@ -909,6 +1156,8 @@ let "SimRAD" # requires Biostrings, and ShortRead "SimSeq" # requires edgeR "siplab" # requires spatstat + "sirt" # requires DiagrammeR to build + "sjPlot" # requires nlopt "smart" # requires PMA "snpEnrichment" # requires snpStats "snplist" # requires biomaRt @@ -916,41 +1165,60 @@ let "SNPtools" # requires IRanges, GenomicRanges, Biostrings, and Rsamtools "SOD" # depends on proprietary cudatoolkit "soilphysics" # requires rpanel + "spacom" # requires nlopt "sparr" # requires spatstat "spatialsegregation" # requires spatstat "SpatialVx" # requires spatstat "speaq" # requires MassSpecWavelet + "specificity" # requires nlopt "spocc" # requires leafletR "SQDA" # requires limma + "ssizeRNA" # depends on missing 'Biobase', 'edgeR', 'limma', 'qvalue' + "ssmrob" # requires nlopt "stagePop" # depends on broken PBSddesolve "statar" # depends on broken lfe "Statomica" # requires Biobase, multtest + "stcm" # requires nlopt + "stepp" # requires nlopt "stpp" # requires spatstat "structSSI" # requires multtest "strum" # requires Rgraphviz "superbiclust" # requires fabia + "Surrogate" # Requires Nlopt "surveillance" # requires polyCub + "survJamda" # depends on missing survcomp "swamp" # requires impute + "switchr" # build is broken + "switchrGist" # requires switchr "sybilSBML" # requires libSBML + "systemfit" # requires nlopt "taxize" # requres bold "TcGSA" # requires multtest + "TDMR" # REQUIRES NLOPT + "tigerstats" # requires nlopt + "timeSeq" # depends on missing edgeR "topologyGSA" # requires gRbase "TR8" # requres taxize + "TriMatch" # Requires Nlopt "trip" # requires spatstat "TROM" # misses undeclared dependencies topGO', 'AnnotationDbi', 'GO.db' "ttScreening" # requires sva, and limma + "userfriendlyscience" # requires nlopt "V8" # compilation error + "VIMGUI" # REQUIRES NLOPT + "VIM" # REQUIRES NLOPT "vmsbase" # depends on broken PBSmapping "vows" # requires rpanel + "wfe" # requires nlopt "WGCNA" # requires impute "wgsea" # requires snpStats "WideLM" # depends on proprietary cudatoolkit "x_ent" # requires opencpu + "xergm" # requires nlopt + "xml2" # build is broken + "ZeligMultilevel" # Requires Nlopt + "zetadiv" # requires nlopt "zoib" # tarball is invalid on server - "timeSeq" # depends on missing edgeR - "survJamda" # depends on missing survcomp - "ssizeRNA" # depends on missing 'Biobase', 'edgeR', 'limma', 'qvalue' - "h5" # depends on missing h5 system library ]; otherOverrides = old: new: { From 9fc5317055059cbad38a3163805d39838668721c Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 12:01:43 +0200 Subject: [PATCH 54/90] r-modules: fix curl --- pkgs/development/r-modules/default.nix | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 34e50d08413..d2ef6f5daa8 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -216,7 +216,7 @@ let CARramps = [ pkgs.linuxPackages.nvidia_x11 pkgs.liblapack ]; chebpol = [ pkgs.fftw ]; cit = [ pkgs.gsl ]; - curl = [ pkgs.curl pkgs.openldap ]; + curl = [ pkgs.curl ]; devEMF = [ pkgs.xlibs.libXft ]; diversitree = [ pkgs.gsl pkgs.fftw ]; EMCluster = [ pkgs.liblapack ]; @@ -737,7 +737,6 @@ let "Crossover" # fails self-test "CrypticIBDcheck" # requires rJPSGCS "cudaBayesreg" # requres Rmath - "curl" # build is broken "curvHDR" # requires flowCore "D2C" # requires gRbase "DAAGbio" # requires limma @@ -1230,7 +1229,7 @@ let }); curl = old.curl.overrideDerivation (attrs: { - preConfigure = "export CURL_INCLUDES=${pkgs.curl}/include/curl"; + preConfigure = "export CURL_INCLUDES=${pkgs.curl}/include"; }); iFes = old.iFes.overrideDerivation (attrs: { From 8ac6350ce77a73559ca7e0b53c1c042a92432af9 Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 12:06:07 +0200 Subject: [PATCH 55/90] r-modules: fix pander --- pkgs/development/r-modules/default.nix | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index d2ef6f5daa8..00565e0905d 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -199,6 +199,7 @@ let packagesWithRDepends = { FactoMineR = [ self.car ]; + pander = [ self.codetools ]; }; packagesWithNativeBuildInputs = { @@ -244,6 +245,7 @@ let nloptr = [ pkgs.nlopt ]; openssl = [ pkgs.openssl ]; outbreaker = [ pkgs.gsl ]; + pander = [ pkgs.pandoc pkgs.which ]; pbdMPI = [ pkgs.openmpi ]; pbdNCDF4 = [ pkgs.netcdf ]; pbdPROF = [ pkgs.openmpi ]; @@ -265,9 +267,9 @@ let RcppZiggurat = [ pkgs.gsl ]; rgdal = [ pkgs.proj pkgs.gdal ]; rgeos = [ pkgs.geos ]; + rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ]; rgl = [ pkgs.mesa pkgs.x11 ]; Rglpk = [ pkgs.glpk ]; - rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ]; RGtk2 = [ pkgs.gtk2 ]; Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ]; ridge = [ pkgs.gsl ]; @@ -972,7 +974,6 @@ let "PairViz" # requires graph "pamm" # requires nlopt "PANDA" # requires GO.db - "pander" # build is broken "panelAR" # requires nlopt "papeR" # requires nlopt "parboost" # requires nlopt From ccd6988b3d4226be2a516945d5b459146c6678da Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 12:11:26 +0200 Subject: [PATCH 56/90] r-modules: fix xml2 --- pkgs/development/r-modules/default.nix | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 00565e0905d..283e38bd80b 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -325,6 +325,7 @@ let VBmix = [ pkgs.gsl pkgs.fftw pkgs.qt4 ]; WhopGenome = [ pkgs.zlib ]; XBRL = [ pkgs.zlib pkgs.libxml2 ]; + xml2 = [ pkgs.libxml2 ]; XML = [ pkgs.libtool pkgs.libxml2 pkgs.xmlsec pkgs.libxslt ]; }; @@ -1215,7 +1216,6 @@ let "WideLM" # depends on proprietary cudatoolkit "x_ent" # requires opencpu "xergm" # requires nlopt - "xml2" # build is broken "ZeligMultilevel" # Requires Nlopt "zetadiv" # requires nlopt "zoib" # tarball is invalid on server @@ -1223,10 +1223,7 @@ let otherOverrides = old: new: { xml2 = old.xml2.overrideDerivation (attrs: { - preConfigure = '' - export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2 - export LIBXML_LIBDIR=${pkgs.libxml2}/lib - ''; + preConfigure = "export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2"; }); curl = old.curl.overrideDerivation (attrs: { From 21c18c4f0a3e47a860cfd57d4269ee2cb582480c Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 12:28:19 +0200 Subject: [PATCH 57/90] r-modules: fix rapport --- pkgs/development/r-modules/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 283e38bd80b..134e9299b68 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -258,6 +258,7 @@ let R2GUESS = [ pkgs.gsl ]; R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ]; RAppArmor = [ pkgs.libapparmor ]; + rapport = [ pkgs.which ]; rbamtools = [ pkgs.zlib ]; RCA = [ pkgs.gmp ]; rcdd = [ pkgs.gmp ]; From 362e60a5dcea491d60673b4e620e4c7169e69a57 Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 12:29:02 +0200 Subject: [PATCH 58/90] r-modules: fix rapportools --- pkgs/development/r-modules/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 134e9299b68..1dc6019f42a 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -259,6 +259,7 @@ let R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ]; RAppArmor = [ pkgs.libapparmor ]; rapport = [ pkgs.which ]; + rapportools = [ pkgs.which ]; rbamtools = [ pkgs.zlib ]; RCA = [ pkgs.gmp ]; rcdd = [ pkgs.gmp ]; From 19c5b0a8cdf5a6053141864985fa0ad0bcfe2180 Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Mon, 15 Jun 2015 20:45:08 +0200 Subject: [PATCH 59/90] hackage-packages.nix: update to https://github.com/commercialhaskell/all-cabal-files/commit/a6e45bb640861b6f3281828c92d392e7c53c284d with hackage2nix revision 6c4694e3e3d2f6135be35b967f6f459a01789604 --- .../haskell-modules/hackage-packages.nix | 342 +++++++++++++++--- 1 file changed, 299 insertions(+), 43 deletions(-) diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 75d61b83d96..2d24211870d 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -3192,6 +3192,29 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "DSA" = callPackage + ({ mkDerivation, base, binary, bytestring, crypto-api + , crypto-pubkey-types, DRBG, ghc-prim, HUnit, integer-gmp + , QuickCheck, SHA, tagged, test-framework, test-framework-hunit + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "DSA"; + version = "1"; + sha256 = "0js67dj7dls7ivvdw1hvxc1cw0rl4bvnfip16ygmgwg98344bfwl"; + buildDepends = [ + base binary bytestring crypto-api crypto-pubkey-types ghc-prim + integer-gmp SHA tagged + ]; + testDepends = [ + base binary bytestring crypto-api crypto-pubkey-types DRBG ghc-prim + HUnit integer-gmp QuickCheck SHA tagged test-framework + test-framework-hunit test-framework-quickcheck2 + ]; + description = "Implementation of DSA, based on the description of FIPS 186-4"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "DSH" = callPackage ({ mkDerivation, aeson, algebra-dag, ansi-wl-pprint, base , bytestring, containers, Decimal, dlist, either, hashable, HUnit @@ -14088,10 +14111,9 @@ self: { ({ mkDerivation, base, directory, mtl, syb, transformers }: mkDerivation { pname = "Strafunski-StrategyLib"; - version = "5.0.0.7"; - sha256 = "0dsa3zg24rk52zyyh2y13sb0fnh01vwq0y2yybyiy3vkc7pznjvq"; + version = "5.0.0.8"; + sha256 = "09k9lcrrdzj6p7ywagc6mw17g4x9i743np36p4dkdp37q48j0mac"; buildDepends = [ base directory mtl syb transformers ]; - jailbreak = true; description = "Library for strategic programming"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -17366,8 +17388,8 @@ self: { }: mkDerivation { pname = "aeson-better-errors"; - version = "0.7.0.0"; - sha256 = "01kfbbpf0kdjidgiscljg6mx0x4qk89n5jl44lhg52i3ni3wr28x"; + version = "0.8.0"; + sha256 = "1synbykzdkrkdys9xl0y9yarbi7ya0ij62smambi9ndz474ngb95"; buildDepends = [ aeson base bytestring dlist mtl scientific text transformers transformers-compat unordered-containers vector void @@ -20084,6 +20106,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "app-lens" = callPackage + ({ mkDerivation, base, containers, lens, mtl }: + mkDerivation { + pname = "app-lens"; + version = "0.1.0.0"; + revision = "1"; + sha256 = "0gizjnc7x1ggryfrm4d87xiyjz9yw6c5y3zp23x40bgmw49zl318"; + editedCabalFile = "a143bd5aec7a06285e0ef56e76f31e0d8b69f277da57ce4d88a7688355ca86a6"; + buildDepends = [ base containers lens mtl ]; + jailbreak = true; + homepage = "https://bitbucket.org/kztk/app-lens"; + description = "applicative (functional) bidirectional programming beyond composition chains"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "app-settings" = callPackage ({ mkDerivation, base, containers, directory, hspec, HUnit, mtl , parsec, text @@ -21696,8 +21734,8 @@ self: { ({ mkDerivation, attoparsec, base, transformers }: mkDerivation { pname = "attoparsec-trans"; - version = "0.1.0.3"; - sha256 = "11a743qgh9rwjyf1hng5jg139xr11dsjj1bisqaaayb17addd2xx"; + version = "0.1.1.0"; + sha256 = "0lsbl7hhirr13jmn6fc4g5443j73p4rxjgxvv967n5dsp7xrjaa7"; buildDepends = [ attoparsec base transformers ]; homepage = "https://github.com/srijs/haskell-attoparsec-trans"; description = "Interleaved effects for attoparsec parsers"; @@ -25872,6 +25910,7 @@ self: { homepage = "https://github.com/tebello-thejane/bitx-haskell"; description = "A Haskell library for working with the BitX bitcoin exchange"; license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "bk-tree" = callPackage @@ -29652,6 +29691,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "cased" = callPackage + ({ mkDerivation, base, text }: + mkDerivation { + pname = "cased"; + version = "0.1.0.0"; + sha256 = "08xdc0mpp6b6inaxh6cr6ni08sy2ahfcbq8xbs3m4cfqbrqfd543"; + buildDepends = [ base text ]; + homepage = "https://github.com/jb55/cased"; + description = "Track string casing in its type"; + license = stdenv.lib.licenses.mit; + }) {}; + "cases" = callPackage ({ mkDerivation, attoparsec, base, base-prelude, HTF, HUnit , loch-th, placeholders, QuickCheck, text @@ -40428,6 +40479,7 @@ self: { homepage = "https://github.com/kryoxide/delta"; description = "A library for detecting file changes"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "delta-h" = callPackage @@ -43301,12 +43353,14 @@ self: { mkDerivation { pname = "dozens"; version = "0.1.1"; + revision = "1"; sha256 = "1hvsdc69ag4x8rp2pzr3cxjfbl4fh9bdj4bwlkfvpr755qdi45ky"; + editedCabalFile = "08e6297d7be6ec753261aa5cb8f265a6ba6c369f44d25f46f9784ae1d8a88e52"; buildDepends = [ aeson base bytestring data-default-class http-client http-types reflection scientific text transformers ]; - homepage = "https://github.com/philopon/apiary"; + homepage = "https://github.com/philopon/dozens-hs"; description = "dozens api library"; license = stdenv.lib.licenses.mit; }) {}; @@ -45732,8 +45786,8 @@ self: { ({ mkDerivation, base, bytestring, unix }: mkDerivation { pname = "entropy"; - version = "0.3.6"; - sha256 = "1sfv930hvdmf018ngdl15jac2bgj75941w0ndlh78n1jgmf04jhn"; + version = "0.3.7"; + sha256 = "1vzg9fi597dbrcbjsr71y47rvmhiih7lg5rjnb297fzdlbmj1w0z"; buildDepends = [ base bytestring unix ]; homepage = "https://github.com/TomMD/entropy"; description = "A platform independent entropy source"; @@ -65943,8 +65997,8 @@ self: { ({ mkDerivation, base, binary, gsl, hmatrix, storable-complex }: mkDerivation { pname = "hmatrix-gsl-stats"; - version = "0.3.0.3"; - sha256 = "0zrh3knwqkaqlgajza22jfg3xhsxhiaf8qmiwnd9qjbasnm5a1lp"; + version = "0.4"; + sha256 = "08rrvn833psl0fic1zvhgv2ymgj16cdrfwv003fiapphnqxcpj9a"; buildDepends = [ base binary hmatrix storable-complex ]; pkgconfigDepends = [ gsl ]; homepage = "http://code.haskell.org/hmatrix-gsl-stats"; @@ -75067,8 +75121,8 @@ self: { }: mkDerivation { pname = "inline-c"; - version = "0.5.3.2"; - sha256 = "0sihzjscdrk02z2d22j0fcqgk05nhpg16zy2cdkxjj4cp09nbaac"; + version = "0.5.3.4"; + sha256 = "1hn1diaxvg0658j9wy9nsa4fhjzjk4g9f161gb26n5cfymsjnnc3"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -79305,6 +79359,7 @@ self: { homepage = "https://github.com/nikita-volkov/laika"; description = "Minimalistic type-checked compile-time template engine"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "lambda-ast" = callPackage @@ -81394,8 +81449,8 @@ self: { }: mkDerivation { pname = "lentil"; - version = "0.1.1.2"; - sha256 = "06k0vvxp8vd43bbslm78lmmmc89q3b9ghwfj0chvaw32m0hd8l0z"; + version = "0.1.1.3"; + sha256 = "0m2k3ba4b9dxd5ql8z3m9lmbc9lbxl1d2vi0k0024mjlpp0kdwwm"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -88816,8 +88871,8 @@ self: { ({ mkDerivation, base, containers, ghc-prim }: mkDerivation { pname = "monad-skeleton"; - version = "0.1.2"; - sha256 = "13lkbbvajfl4lr6r5plmxvqk6bxn7mp6acsyfxwh2yr6krzdlb82"; + version = "0.1.2.1"; + sha256 = "0sg1yj4cp7ac26ydwhpc05j9bs3scaj25b9sb0xr1gw1qasnyi76"; buildDepends = [ base containers ghc-prim ]; homepage = "https://github.com/fumieval/monad-skeleton"; description = "An undead monad"; @@ -89345,8 +89400,8 @@ self: { }: mkDerivation { pname = "mono-traversable"; - version = "0.9.2"; - sha256 = "1cw8bsf6ayalsx0l0xwb2f2j2rg6zpfsvci174fr4xiyr646mpd6"; + version = "0.9.2.1"; + sha256 = "1vs2nl3c0gdhaxxh013ri3l9n13yl9nawiynpsyq6zp495xq5hrl"; buildDepends = [ base bytestring comonad containers dlist dlist-instances hashable semigroupoids semigroups text transformers unordered-containers @@ -93751,6 +93806,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "notzero" = callPackage + ({ mkDerivation, base, bifunctors, directory, doctest, filepath + , lens, mtl, QuickCheck, semigroupoids, semigroups + , template-haskell, transformers + }: + mkDerivation { + pname = "notzero"; + version = "0.0.1"; + sha256 = "1sk7hq3qpfrimgpg4r22lzl749yazv1hka3si4921gg61w4bdx8l"; + buildDepends = [ + base bifunctors lens mtl semigroupoids semigroups transformers + ]; + testDepends = [ + base directory doctest filepath QuickCheck template-haskell + ]; + homepage = "https://github.com/NICTA/notzero"; + description = "A data type for representing numeric values, except zero"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "np-extras" = callPackage ({ mkDerivation, base, containers, numeric-prelude, primes }: mkDerivation { @@ -105160,6 +105235,7 @@ self: { homepage = "https://github.com/nikita-volkov/record-aeson"; description = "Instances of \"aeson\" classes for the \"record\" types"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "record-gl" = callPackage @@ -105183,6 +105259,7 @@ self: { ]; description = "Utilities for working with OpenGL's GLSL shading language and Nikita Volkov's \"Record\"s"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "record-preprocessor" = callPackage @@ -105201,6 +105278,7 @@ self: { homepage = "https://github.com/nikita-volkov/record-preprocessor"; description = "Compiler preprocessor introducing a syntactic extension for anonymous records"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "record-syntax" = callPackage @@ -105223,6 +105301,7 @@ self: { homepage = "https://github.com/nikita-volkov/record-syntax"; description = "A library for parsing and processing the Haskell syntax sprinkled with anonymous records"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "records" = callPackage @@ -106389,22 +106468,20 @@ self: { }) {}; "relational-query" = callPackage - ({ mkDerivation, array, base, bytestring, Cabal, cabal-test-compat - , containers, dlist, names-th, persistable-record, sql-words + ({ mkDerivation, array, base, bytestring, containers, dlist + , names-th, persistable-record, quickcheck-simple, sql-words , template-haskell, text, time, time-locale-compat, transformers }: mkDerivation { pname = "relational-query"; - version = "0.5.0.1"; - sha256 = "1yhcdc0m839pdwhb2vv25wz1vbhk5ynfkb9d6xgkjymsjvqlp78n"; + version = "0.5.0.2"; + sha256 = "1n9x0yrfjgyf49b19vjp0n57h88vvj6bzc8nz0c9z0568cdb9fsh"; buildDepends = [ array base bytestring containers dlist names-th persistable-record sql-words template-haskell text time time-locale-compat transformers ]; - testDepends = [ - base Cabal cabal-test-compat containers transformers - ]; + testDepends = [ base containers quickcheck-simple transformers ]; homepage = "http://khibino.github.io/haskell-relational-record/"; description = "Typeful, Modular, Relational, algebraic query engine"; license = stdenv.lib.licenses.bsd3; @@ -111796,6 +111873,158 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "serversession" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , containers, data-default, hashable, hspec, nonce, path-pieces + , QuickCheck, text, time, transformers, unordered-containers + }: + mkDerivation { + pname = "serversession"; + version = "1.0"; + sha256 = "0g56lqcrfhl9mrzqcd0sckyc98friqlfjxl1ws1j2zsc1z153x1a"; + buildDepends = [ + aeson base base64-bytestring bytestring data-default hashable nonce + path-pieces text time transformers unordered-containers + ]; + testDepends = [ + aeson base base64-bytestring bytestring containers data-default + hspec nonce path-pieces QuickCheck text time transformers + unordered-containers + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Secure, modular server-side sessions"; + license = stdenv.lib.licenses.mit; + }) {}; + + "serversession-backend-acid-state" = callPackage + ({ mkDerivation, acid-state, base, containers, hspec, mtl, safecopy + , serversession, unordered-containers + }: + mkDerivation { + pname = "serversession-backend-acid-state"; + version = "1.0"; + sha256 = "122mp6vcc89f44vijlncywmbsim76hhhlzw38snnsmsfn0q96ln1"; + buildDepends = [ + acid-state base containers mtl safecopy serversession + unordered-containers + ]; + testDepends = [ + acid-state base containers hspec mtl safecopy serversession + unordered-containers + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Storage backend for serversession using acid-state"; + license = stdenv.lib.licenses.mit; + }) {}; + + "serversession-backend-persistent" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring, cereal + , hspec, monad-logger, path-pieces, persistent + , persistent-postgresql, persistent-sqlite, persistent-template + , QuickCheck, resource-pool, serversession, tagged, text, time + , transformers, unordered-containers + }: + mkDerivation { + pname = "serversession-backend-persistent"; + version = "1.0"; + sha256 = "1rcfff45qm8akjbby1j64lmc8gff96gzssk2jaw8x5k5nn2pdgq0"; + buildDepends = [ + aeson base base64-bytestring bytestring cereal path-pieces + persistent serversession tagged text time transformers + unordered-containers + ]; + testDepends = [ + aeson base base64-bytestring bytestring cereal hspec monad-logger + path-pieces persistent persistent-postgresql persistent-sqlite + persistent-template QuickCheck resource-pool serversession text + time transformers unordered-containers + ]; + jailbreak = true; + homepage = "https://github.com/yesodweb/serversession"; + description = "Storage backend for serversession using persistent and an RDBMS"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "serversession-backend-redis" = callPackage + ({ mkDerivation, base, bytestring, hedis, hspec, path-pieces + , serversession, tagged, text, time, transformers + , unordered-containers + }: + mkDerivation { + pname = "serversession-backend-redis"; + version = "1.0"; + sha256 = "0r1zr25zw80s4psscdwscf7wlm8qfw4dyk0kkczzvj5434jnxnj2"; + buildDepends = [ + base bytestring hedis path-pieces serversession tagged text time + transformers unordered-containers + ]; + testDepends = [ + base bytestring hedis hspec path-pieces serversession text time + transformers unordered-containers + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Storage backend for serversession using Redis"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "serversession-frontend-snap" = callPackage + ({ mkDerivation, base, bytestring, nonce, path-pieces + , serversession, snap, snap-core, text, time, transformers + , unordered-containers + }: + mkDerivation { + pname = "serversession-frontend-snap"; + version = "1.0"; + sha256 = "1n29c3jfv61fz9kfc4zjwj7df1fll74l2kqccxmg4id8jpsrywci"; + buildDepends = [ + base bytestring nonce path-pieces serversession snap snap-core text + time transformers unordered-containers + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Snap bindings for serversession"; + license = stdenv.lib.licenses.mit; + }) {}; + + "serversession-frontend-wai" = callPackage + ({ mkDerivation, base, bytestring, cookie, data-default + , path-pieces, serversession, text, time, transformers + , unordered-containers, vault, wai, wai-session + }: + mkDerivation { + pname = "serversession-frontend-wai"; + version = "1.0"; + sha256 = "0rxifhjirhmhk1x14m6lvpv6dl32g179i4i3xi3dq59r7l716j0b"; + buildDepends = [ + base bytestring cookie data-default path-pieces serversession text + time transformers unordered-containers vault wai wai-session + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "wai-session bindings for serversession"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "serversession-frontend-yesod" = callPackage + ({ mkDerivation, base, bytestring, containers, cookie, data-default + , path-pieces, serversession, text, time, transformers + , unordered-containers, wai, yesod-core + }: + mkDerivation { + pname = "serversession-frontend-yesod"; + version = "1.0"; + sha256 = "0lv7gkj4inks98g44n5kqvx5s4c66lmxf7gqfdly54znggglcf86"; + buildDepends = [ + base bytestring containers cookie data-default path-pieces + serversession text time transformers unordered-containers wai + yesod-core + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Yesod bindings for serversession"; + license = stdenv.lib.licenses.mit; + }) {}; + "servius" = callPackage ({ mkDerivation, base, blaze-builder, blaze-html, bytestring , cmdargs, containers, directory, hamlet, http-types, mime-types @@ -114852,8 +115081,8 @@ self: { ({ mkDerivation, acid-state, base, mtl, snap, text, transformers }: mkDerivation { pname = "snaplet-acid-state"; - version = "0.2.6.2"; - sha256 = "0p4cfc5llz2z0jfmkj225nxi8abdncjl53g1rjwc86yfgld0wwm9"; + version = "0.2.7"; + sha256 = "0vjqcmcp0p8vmh7vzwv62bigbx1ck2vnaxlkqmg5wddn0mhfm6gx"; buildDepends = [ acid-state base mtl snap text transformers ]; homepage = "https://github.com/mightybyte/snaplet-acid-state"; description = "acid-state snaplet for Snap Framework"; @@ -116505,8 +116734,8 @@ self: { }: mkDerivation { pname = "species"; - version = "0.3.3"; - sha256 = "0cy6l4gvzydl9k2ijxkxhr6jqjbf85z71v6zrvbdajc3xip99w6i"; + version = "0.3.4"; + sha256 = "1j1bf1l5hg67kagbzwyjw8fnli2axi6ny4zb8fdd1m8zqqrajxr4"; buildDepends = [ base containers multiset-comb np-extras numeric-prelude template-haskell @@ -117075,13 +117304,13 @@ self: { }) {}; "sql-words" = callPackage - ({ mkDerivation, base, Cabal, cabal-test-compat, QuickCheck }: + ({ mkDerivation, base, QuickCheck, quickcheck-simple }: mkDerivation { pname = "sql-words"; - version = "0.1.3.0"; - sha256 = "03r6lk4rgk55idxqifazrq673hnkzr089b34qjv1x3yk160xnmz8"; + version = "0.1.3.1"; + sha256 = "17dma51naynrxhvljwp7s3sadnmfqgallxsq7l763z6d0a25zkn9"; buildDepends = [ base ]; - testDepends = [ base Cabal cabal-test-compat QuickCheck ]; + testDepends = [ base QuickCheck quickcheck-simple ]; homepage = "http://khibino.github.io/haskell-relational-record/"; description = "Simple idea SQL keywords data constructor into OverloadedString"; license = stdenv.lib.licenses.bsd3; @@ -117111,8 +117340,8 @@ self: { }: mkDerivation { pname = "sqlite-simple"; - version = "0.4.8.0"; - sha256 = "098d1s80wlvsp307422f79bm3a9knvgw5ni6jap62fl4rpa7fsmz"; + version = "0.4.9.0"; + sha256 = "18v03yqq9jxyvxq93rh20sxak4ffsshhpq9v9lrz1lk9vnhy9pw1"; buildDepends = [ attoparsec base blaze-builder blaze-textual bytestring containers direct-sqlite text time transformers @@ -123182,7 +123411,9 @@ test/package-dump/ghc-7.10.txt"; mkDerivation { pname = "text-position"; version = "0.1.0.0"; + revision = "1"; sha256 = "0cdi5kwpwvzmadhgkgnwax4jhllm6gjrsg1y3f3fp12x28nml1g8"; + editedCabalFile = "45fd633a94e0a13dbaeeb1791725a72d185f54027569e967f8006f07df67d586"; buildDepends = [ base regex-applicative ]; testDepends = [ base QuickCheck regex-applicative ]; jailbreak = true; @@ -133818,6 +134049,32 @@ test/package-dump/ghc-7.10.txt"; license = stdenv.lib.licenses.bsd3; }) {}; + "wolf" = callPackage + ({ mkDerivation, aeson, amazonka, amazonka-s3, amazonka-swf, base + , bytestring, conduit, conduit-extra, cryptohash, exceptions + , fast-logger, http-conduit, lens, monad-control, monad-logger, mtl + , optparse-applicative, safe, shelly, text, transformers + , transformers-base, unordered-containers, uuid, yaml + }: + mkDerivation { + pname = "wolf"; + version = "0.1.0"; + sha256 = "1b51gb7waxv0i7l3phz0h24n5jpir51b7zycs75kb1wn8qmm8ia3"; + isLibrary = true; + isExecutable = true; + buildDepends = [ + aeson amazonka amazonka-s3 amazonka-swf base bytestring conduit + conduit-extra cryptohash exceptions fast-logger http-conduit lens + monad-control monad-logger mtl optparse-applicative safe shelly + text transformers transformers-base unordered-containers uuid yaml + ]; + jailbreak = true; + homepage = "https://github.com/swift-nav/wolf"; + description = "Amazon Simple Workflow Service Wrapper"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "word-trie" = callPackage ({ mkDerivation, base, binary, containers, hspec, QuickCheck }: mkDerivation { @@ -137055,13 +137312,13 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-crud-persist"; - version = "0.1.0.0"; - sha256 = "0kzigyggzxv4ps8a15bhk8ngxn15inp630x0v3kn0j1xdmj7inpw"; + version = "0.1.1"; + sha256 = "171papb9hns62jswqxkg4q41wb8sb72714i4wghx7g8svh17lv28"; buildDepends = [ base lens persistent text transformers wai yesod-core yesod-form yesod-persistent ]; - homepage = "google.com"; + homepage = "https://github.com/andrewthad/yesod-crud-persist"; description = "Flexible CRUD subsite usable with Yesod and Persistent"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -137818,10 +138075,9 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-table"; - version = "0.1.1"; - sha256 = "0glbdm19bf0pxp0y2831yi0yxjwc3b9xfhsdimxyc5ppm2dqdxsj"; + version = "0.1.2"; + sha256 = "1415y7q45s65cklqyrvcgsqi6v07p698024d5wfghcjnv9qylwmi"; buildDepends = [ base containers contravariant text yesod-core ]; - jailbreak = true; homepage = "https://github.com/andrewthad/yesod-table"; description = "HTML tables for Yesod"; license = stdenv.lib.licenses.mit; From 614769a9ede25991cd79d71f00813c3fb7e9d43d Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 11:12:14 +0200 Subject: [PATCH 60/90] haskell-serversession: disable failing test suite --- pkgs/development/haskell-modules/configuration-common.nix | 3 +++ 1 file changed, 3 insertions(+) diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index d42c05fad28..29bca6c99d0 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -873,4 +873,7 @@ self: super: { # Doesn't work with recent versions of mtl. cron-compat = markBroken super.cron-compat; + # https://github.com/yesodweb/serversession/issues/1 + serversession = dontCheck super.serversession; + } From 6390ea5026b45a77b4290795d0ea2d7c75a46d09 Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 11:42:29 +0200 Subject: [PATCH 61/90] haskell-serversession-backend-redis: disable failing test suite --- pkgs/development/haskell-modules/configuration-common.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 29bca6c99d0..a1038d3cb4b 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -334,6 +334,7 @@ self: super: { wreq = dontCheck super.wreq; # http://hydra.cryp.to/build/501895/nixlog/1/raw wreq-sb = dontCheck super.wreq-sb; # http://hydra.cryp.to/build/783948/log/raw wuss = dontCheck super.wuss; # http://hydra.cryp.to/build/875964/nixlog/2/raw + serversession-backend-redis = dontCheck super.serversession-backend-redis; # https://github.com/NICTA/digit/issues/3 digit = dontCheck super.digit; From 90c3d380d1aacf19368549182452541348dda2dd Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 11:42:39 +0200 Subject: [PATCH 62/90] haskell-wai-session: package is broken --- pkgs/development/haskell-modules/configuration-common.nix | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index a1038d3cb4b..2a5231aef21 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -877,4 +877,8 @@ self: super: { # https://github.com/yesodweb/serversession/issues/1 serversession = dontCheck super.serversession; + # https://github.com/singpolyma/wai-session/issues/8 + wai-session = markBroken super.wai-session; + serversession-frontend-wai = dontDistribute super.serversession-frontend-wai; + } From fbe153989ccd8ba4955e16bd44e2ffcc9a9710cc Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 12:32:21 +0200 Subject: [PATCH 63/90] ghcjs: mark broken The build has been failing for quite some time. --- pkgs/development/compilers/ghcjs/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/compilers/ghcjs/default.nix b/pkgs/development/compilers/ghcjs/default.nix index 696415f4562..06588ec949b 100644 --- a/pkgs/development/compilers/ghcjs/default.nix +++ b/pkgs/development/compilers/ghcjs/default.nix @@ -127,4 +127,5 @@ in mkDerivation (rec { license = stdenv.lib.licenses.bsd3; platforms = ghc.meta.platforms; maintainers = with stdenv.lib.maintainers; [ jwiegley cstrahan ]; + broken = true; # configure fails: "aeson >=0.7 && <0.9, syb ==0.4.*, text-binary ==0.1.*" }) From 8a8ed5fa1b7746caeed463963719e1c6744e69c4 Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Tue, 16 Jun 2015 12:32:46 +0200 Subject: [PATCH 64/90] ghcjs: unbreak syntax highlighting in Emacs --- pkgs/development/compilers/ghcjs/default.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pkgs/development/compilers/ghcjs/default.nix b/pkgs/development/compilers/ghcjs/default.nix index 06588ec949b..65988901de7 100644 --- a/pkgs/development/compilers/ghcjs/default.nix +++ b/pkgs/development/compilers/ghcjs/default.nix @@ -103,7 +103,7 @@ in mkDerivation (rec { # Make the patches be relative their corresponding package's directory. # See: https://github.com/ghcjs/ghcjs-boot/pull/12 - for patch in $topDir/ghcjs-boot/patches/*.patch; do + for patch in "$topDir/ghcjs-boot/patches/"*.patch; do echo "fixing patch: $patch" sed -i -e 's@ \(a\|b\)/boot/[^/]\+@ \1@g' $patch done From d5628c982df2fad1ec42c0e6471c90bd3556a90d Mon Sep 17 00:00:00 2001 From: Luca Bruno Date: Tue, 16 Jun 2015 11:20:20 +0000 Subject: [PATCH 65/90] Bypass /etc/gdm/Xsession. Closes #8351 --- nixos/modules/services/x11/display-managers/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/nixos/modules/services/x11/display-managers/default.nix b/nixos/modules/services/x11/display-managers/default.nix index c5012dbb5e3..1fb7f20893d 100644 --- a/nixos/modules/services/x11/display-managers/default.nix +++ b/nixos/modules/services/x11/display-managers/default.nix @@ -165,6 +165,7 @@ let Type=XSession TryExec=${cfg.displayManager.session.script} Exec=${cfg.displayManager.session.script} '${n}' + X-GDM-BypassXsession=true Name=${n} Comment= EODESKTOP From d2ad04cd382e097eb72f4084deee9842aa362ba1 Mon Sep 17 00:00:00 2001 From: Pascal Wittmann Date: Tue, 16 Jun 2015 14:56:15 +0200 Subject: [PATCH 66/90] add california, a calendar application for gnome --- pkgs/desktops/gnome-3/3.16/default.nix | 2 + ...d-with-evolution-data-server-3.13.90.patch | 39 +++++++++++++++++++ .../gnome-3/3.16/misc/california/default.nix | 39 +++++++++++++++++++ 3 files changed, 80 insertions(+) create mode 100644 pkgs/desktops/gnome-3/3.16/misc/california/0002-Build-with-evolution-data-server-3.13.90.patch create mode 100644 pkgs/desktops/gnome-3/3.16/misc/california/default.nix diff --git a/pkgs/desktops/gnome-3/3.16/default.nix b/pkgs/desktops/gnome-3/3.16/default.nix index 2dee0cefd92..da3527d8ceb 100644 --- a/pkgs/desktops/gnome-3/3.16/default.nix +++ b/pkgs/desktops/gnome-3/3.16/default.nix @@ -279,6 +279,8 @@ let #### Misc -- other packages on http://ftp.gnome.org/pub/GNOME/sources/ + california = callPackage ./misc/california { }; + geary = callPackage ./misc/geary { webkitgtk = webkitgtk24x; }; diff --git a/pkgs/desktops/gnome-3/3.16/misc/california/0002-Build-with-evolution-data-server-3.13.90.patch b/pkgs/desktops/gnome-3/3.16/misc/california/0002-Build-with-evolution-data-server-3.13.90.patch new file mode 100644 index 00000000000..c229cc96094 --- /dev/null +++ b/pkgs/desktops/gnome-3/3.16/misc/california/0002-Build-with-evolution-data-server-3.13.90.patch @@ -0,0 +1,39 @@ +diff --git a/configure.ac b/configure.ac +index 8a94642..1ca6426 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -27,7 +27,7 @@ AC_SUBST(LDFLAGS) + GLIB_REQUIRED=2.38.0 + GTK_REQUIRED=3.12.2 + GEE_REQUIRED=0.10.5 +-ECAL_REQUIRED=3.8.5 ++ECAL_REQUIRED=3.13.90 + LIBSOUP_REQUIRED=2.44 + GDATA_REQUIRED=0.14.0 + GOA_REQUIRED=3.8.3 +diff --git a/src/backing/eds/backing-eds-calendar-source.vala b/src/backing/eds/backing-eds-calendar-source.vala +index ee6a572..5009b5d 100644 +--- a/src/backing/eds/backing-eds-calendar-source.vala ++++ b/src/backing/eds/backing-eds-calendar-source.vala +@@ -256,7 +256,7 @@ internal class EdsCalendarSource : CalendarSource { + + // Invoked by EdsStore prior to making it available outside of unit + internal async void open_async(Cancellable? cancellable) throws Error { +- client = (E.CalClient) yield E.CalClient.connect(eds_source, E.CalClientSourceType.EVENTS, ++ client = (E.CalClient) yield E.CalClient.connect(eds_source, E.CalClientSourceType.EVENTS, 1, + cancellable); + + client.bind_property("readonly", this, PROP_READONLY, BindingFlags.SYNC_CREATE); +diff --git a/vapi/libecal-1.2.vapi b/vapi/libecal-1.2.vapi +index 6ead3ec..46fd711 100644 +--- a/vapi/libecal-1.2.vapi ++++ b/vapi/libecal-1.2.vapi +@@ -23,7 +23,7 @@ namespace E { + public bool check_save_schedules (); + public static bool check_timezones (iCal.icalcomponent comp, GLib.List comps, GLib.Callback tzlookup, void* ecalclient, GLib.Cancellable cancellable) throws GLib.Error; + [CCode (finish_name = "e_cal_client_connect_finish")] +- public static async unowned E.Client connect (E.Source source, E.CalClientSourceType source_type, GLib.Cancellable cancellable) throws GLib.Error; ++ public static async unowned E.Client connect (E.Source source, E.CalClientSourceType source_type, uint32 wait_for_connected_seconds, GLib.Cancellable cancellable) throws GLib.Error; + public static unowned E.Client connect_sync (E.Source source, E.CalClientSourceType source_type, GLib.Cancellable cancellable) throws GLib.Error; + [CCode (finish_name = "e_cal_client_create_object_finish")] + public async void create_object (iCal.icalcomponent icalcomp, GLib.Cancellable? cancellable, out string out_uid) throws GLib.Error; diff --git a/pkgs/desktops/gnome-3/3.16/misc/california/default.nix b/pkgs/desktops/gnome-3/3.16/misc/california/default.nix new file mode 100644 index 00000000000..4bdeeb23a91 --- /dev/null +++ b/pkgs/desktops/gnome-3/3.16/misc/california/default.nix @@ -0,0 +1,39 @@ +{ stdenv, fetchurl, intltool, pkgconfig, gtk3, vala, makeWrapper +, gnome3, glib, libsoup, libgdata, sqlite, itstool, xdg_utils }: + +let + majorVersion = "0.4"; +in +stdenv.mkDerivation rec { + name = "california-${majorVersion}.0"; + + src = fetchurl { + url = "mirror://gnome/sources/california/${majorVersion}/${name}.tar.xz"; + sha256 = "1dky2kllv469k8966ilnf4xrr7z35pq8mdvs7kwziy59cdikapxj"; + }; + + propagatedUserEnvPkgs = [ gnome3.gnome_themes_standard ]; + + buildInputs = [ makeWrapper intltool pkgconfig vala glib gtk3 gnome3.libgee + libsoup libgdata gnome3.gnome_online_accounts gnome3.evolution_data_server + sqlite itstool xdg_utils gnome3.gsettings_desktop_schemas ]; + + preFixup = '' + wrapProgram "$out/bin/california" \ + --set GDK_PIXBUF_MODULE_FILE "$GDK_PIXBUF_MODULE_FILE" \ + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS:${gnome3.defaultIconTheme}/share:${gnome3.gnome_themes_standard}/share:$out/share:$GSETTINGS_SCHEMAS_PATH:${gnome3.gsettings_desktop_schemas}/share" + ''; + + enableParallelBuilding = true; + + # Apply fedoras patch to build with evolution-data-server >3.13 + patches = [ ./0002-Build-with-evolution-data-server-3.13.90.patch ]; + + meta = with stdenv.lib; { + homepage = https://wiki.gnome.org/Apps/California; + description = "Calendar application for GNOME 3"; + maintainers = with maintainers; [ pSub ]; + license = licenses.lgpl21; + platforms = platforms.linux; + }; +} From 55227b330fc7fb3c9f4f56cd11895810b05825fd Mon Sep 17 00:00:00 2001 From: Jascha Geerds Date: Tue, 16 Jun 2015 15:12:37 +0200 Subject: [PATCH 67/90] khal: 0.4.0 -> 0.5.0 --- pkgs/applications/misc/khal/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/misc/khal/default.nix b/pkgs/applications/misc/khal/default.nix index 7f7f1308eb1..2652af9bed9 100644 --- a/pkgs/applications/misc/khal/default.nix +++ b/pkgs/applications/misc/khal/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, pkgs, pythonPackages }: pythonPackages.buildPythonPackage rec { - version = "0.4.0"; + version = "0.5.0"; name = "khal-${version}"; src = fetchurl { url = "https://github.com/geier/khal/archive/v${version}.tar.gz"; - sha256 = "0d32miq55cly4q3raxkw3xpq4d5y3hvzaqvy066nv35bdlpafxi1"; + sha256 = "1rjs5s8ky4n628rs6l5ggaj2abb4kq2avvxmimjjgxz3zh9xlz6s"; }; propagatedBuildInputs = with pythonPackages; [ From de142fe63efd117a998edbdb23b64e0203552e34 Mon Sep 17 00:00:00 2001 From: Luca Bruno Date: Tue, 16 Jun 2015 15:02:58 +0000 Subject: [PATCH 68/90] gtk-vnc: add new lib for gnome --- .../gnome-3/3.16/core/gtk-vnc/default.nix | 30 +++++++++++++++++++ pkgs/desktops/gnome-3/3.16/default.nix | 2 ++ 2 files changed, 32 insertions(+) create mode 100644 pkgs/desktops/gnome-3/3.16/core/gtk-vnc/default.nix diff --git a/pkgs/desktops/gnome-3/3.16/core/gtk-vnc/default.nix b/pkgs/desktops/gnome-3/3.16/core/gtk-vnc/default.nix new file mode 100644 index 00000000000..ebe7370aba7 --- /dev/null +++ b/pkgs/desktops/gnome-3/3.16/core/gtk-vnc/default.nix @@ -0,0 +1,30 @@ +{ stdenv, fetchurl, gdk_pixbuf, pkgconfig, gtk3, cyrus_sasl +, gnutls, gobjectIntrospection, vala, intltool, libgcrypt }: + +stdenv.mkDerivation rec { + versionMajor = "0.5"; + versionMinor = "4"; + moduleName = "gtk-vnc"; + + name = "${moduleName}-${versionMajor}.${versionMinor}"; + + src = fetchurl { + url = "mirror://gnome/sources/${moduleName}/${versionMajor}/${name}.tar.xz"; + sha256 = "1rwwdh7lb16xdmy76ca6mpqfc3zfl3a4bkcr0qb6hs6ffrxak2j8"; + }; + + buildInputs = [ pkgconfig gtk3 gdk_pixbuf gnutls cyrus_sasl + gobjectIntrospection vala intltool libgcrypt ]; + + configureFlags = [ "--with-gtk=3.0" ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = https://wiki.gnome.org/Projects/gtk-vnc; + description = "A VNC viewer widget for GTK+"; + license = licenses.lgpl2; + maintainers = with maintainers; [ lethalman ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/desktops/gnome-3/3.16/default.nix b/pkgs/desktops/gnome-3/3.16/default.nix index da3527d8ceb..d7e6d04614e 100644 --- a/pkgs/desktops/gnome-3/3.16/default.nix +++ b/pkgs/desktops/gnome-3/3.16/default.nix @@ -151,6 +151,8 @@ let gtksourceview = callPackage ./core/gtksourceview { }; + gtk-vnc = callPackage ./core/gtk-vnc { }; + gucharmap = callPackage ./core/gucharmap { }; gvfs = pkgs.gvfs.override { gnome = gnome3; gnomeSupport = true; }; From 3b2c44fc745afca3b14c22f87d58b9d74caf0508 Mon Sep 17 00:00:00 2001 From: Luca Bruno Date: Tue, 16 Jun 2015 15:13:26 +0000 Subject: [PATCH 69/90] vinagre: add new gnome app --- .../gnome-3/3.16/apps/vinagre/default.nix | 29 +++++++++++++++++++ pkgs/desktops/gnome-3/3.16/default.nix | 4 ++- 2 files changed, 32 insertions(+), 1 deletion(-) create mode 100644 pkgs/desktops/gnome-3/3.16/apps/vinagre/default.nix diff --git a/pkgs/desktops/gnome-3/3.16/apps/vinagre/default.nix b/pkgs/desktops/gnome-3/3.16/apps/vinagre/default.nix new file mode 100644 index 00000000000..38263ac73f8 --- /dev/null +++ b/pkgs/desktops/gnome-3/3.16/apps/vinagre/default.nix @@ -0,0 +1,29 @@ +{ stdenv, fetchurl, pkgconfig, gtk3, gnome3, vte, libxml2, gtk-vnc, intltool +, libsecret, itstool, makeWrapper, librsvg }: + +stdenv.mkDerivation rec { + name = "vinagre-${version}"; + + majVersion = gnome3.version; + version = "${majVersion}.1"; + + src = fetchurl { + url = "mirror://gnome/sources/vinagre/${majVersion}/${name}.tar.xz"; + sha256 = "0gs8sqd4r6jlgxn1b7ggyfcisig50z79p0rmigpzwpjjx1bh0z6p"; + }; + + buildInputs = [ pkgconfig gtk3 vte libxml2 gtk-vnc intltool libsecret + itstool makeWrapper gnome3.defaultIconTheme librsvg ]; + + preFixup = '' + wrapProgram "$out/bin/vinagre" \ + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS:$GSETTINGS_SCHEMAS_PATH:$out/share" + ''; + + meta = with stdenv.lib; { + homepage = https://wiki.gnome.org/Apps/Vinagre; + description = "Remote desktop viewer for GNOME"; + platforms = platforms.linux; + maintainers = [ maintainers.lethalman ]; + }; +} diff --git a/pkgs/desktops/gnome-3/3.16/default.nix b/pkgs/desktops/gnome-3/3.16/default.nix index d7e6d04614e..77f45d681a0 100644 --- a/pkgs/desktops/gnome-3/3.16/default.nix +++ b/pkgs/desktops/gnome-3/3.16/default.nix @@ -28,7 +28,7 @@ let gnome-shell-extensions gnome-system-log gnome-system-monitor gnome_terminal gnome-user-docs bijiben evolution file-roller gedit gnome-clocks gnome-music gnome-tweak-tool gnome-photos - nautilus-sendto dconf-editor + nautilus-sendto dconf-editor vinagre ]; inherit (pkgs) libsoup glib gtk2 webkitgtk24x gtk3 gtkmm3 libcanberra; @@ -273,6 +273,8 @@ let pomodoro = callPackage ./apps/pomodoro { }; + vinagre = callPackage ./apps/vinagre { }; + #### Dev http://ftp.gnome.org/pub/GNOME/devtools/ anjuta = callPackage ./devtools/anjuta { }; From e37340b49a874e7fd5357fbc0f001d6e642903a0 Mon Sep 17 00:00:00 2001 From: Luca Bruno Date: Tue, 16 Jun 2015 15:26:37 +0000 Subject: [PATCH 70/90] gnome-pomodoro: move from apps to misc --- pkgs/desktops/gnome-3/3.16/default.nix | 4 ++-- .../desktops/gnome-3/3.16/{apps => misc}/pomodoro/default.nix | 0 2 files changed, 2 insertions(+), 2 deletions(-) rename pkgs/desktops/gnome-3/3.16/{apps => misc}/pomodoro/default.nix (100%) diff --git a/pkgs/desktops/gnome-3/3.16/default.nix b/pkgs/desktops/gnome-3/3.16/default.nix index 77f45d681a0..0c3d49f769f 100644 --- a/pkgs/desktops/gnome-3/3.16/default.nix +++ b/pkgs/desktops/gnome-3/3.16/default.nix @@ -271,8 +271,6 @@ let seahorse = callPackage ./apps/seahorse { }; - pomodoro = callPackage ./apps/pomodoro { }; - vinagre = callPackage ./apps/vinagre { }; #### Dev http://ftp.gnome.org/pub/GNOME/devtools/ @@ -311,6 +309,8 @@ let gtkhtml = callPackage ./misc/gtkhtml { }; + pomodoro = callPackage ./misc/pomodoro { }; + }; in self; # pkgsFun diff --git a/pkgs/desktops/gnome-3/3.16/apps/pomodoro/default.nix b/pkgs/desktops/gnome-3/3.16/misc/pomodoro/default.nix similarity index 100% rename from pkgs/desktops/gnome-3/3.16/apps/pomodoro/default.nix rename to pkgs/desktops/gnome-3/3.16/misc/pomodoro/default.nix From b73a9a0b6860203f7a38f1cec6c859c56bb13cb2 Mon Sep 17 00:00:00 2001 From: Pascal Wittmann Date: Tue, 16 Jun 2015 20:10:57 +0200 Subject: [PATCH 71/90] add libgringotts, a library to encapsulate data in an encrypted structure --- .../libraries/libgringotts/default.nix | 21 +++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 ++ 2 files changed, 23 insertions(+) create mode 100644 pkgs/development/libraries/libgringotts/default.nix diff --git a/pkgs/development/libraries/libgringotts/default.nix b/pkgs/development/libraries/libgringotts/default.nix new file mode 100644 index 00000000000..93ad88f0021 --- /dev/null +++ b/pkgs/development/libraries/libgringotts/default.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, pkgconfig, zlib, bzip2, libmcrypt, libmhash }: + +stdenv.mkDerivation rec { + name = "libgringotts-${version}"; + version = "1.1.2"; + + src = fetchurl { + url = "http://libgringotts.sourceforge.net/current/${name}.tar.bz2"; + sha256 = "1bzfnpf2gwc2bisbrw06s63g9z9v4mh1n9ksqr6pbgj2prz7bvlk"; + }; + + buildInputs = [ pkgconfig zlib bzip2 libmcrypt libmhash ]; + + meta = with stdenv.lib; { + description = "A small library to encapsulate data in an encrypted structure"; + homepage = http://libgringotts.sourceforge.net/; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ pSub ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 2bba940c49a..0552921ddcd 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -6771,6 +6771,8 @@ let libgnurl = callPackage ../development/libraries/libgnurl { }; + libgringotts = callPackage ../development/libraries/libgringotts { }; + libgroove = callPackage ../development/libraries/libgroove { }; libseccomp = callPackage ../development/libraries/libseccomp { }; From 7d7a5e9f0e14106e660cf26860c0d1f4efe7cc74 Mon Sep 17 00:00:00 2001 From: Pascal Wittmann Date: Tue, 16 Jun 2015 20:12:22 +0200 Subject: [PATCH 72/90] add osmo, a handy personal organizer --- pkgs/applications/office/osmo/default.nix | 23 +++++++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 ++ 2 files changed, 25 insertions(+) create mode 100644 pkgs/applications/office/osmo/default.nix diff --git a/pkgs/applications/office/osmo/default.nix b/pkgs/applications/office/osmo/default.nix new file mode 100644 index 00000000000..81f5773a453 --- /dev/null +++ b/pkgs/applications/office/osmo/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchurl, pkgconfig, gtk, libxml2, gettext, libical, libnotify +, libarchive, gtkspell, webkitgtk2, libgringotts }: + +stdenv.mkDerivation rec { + name = "osmo-${version}"; + version = "0.2.12"; + + src = fetchurl { + url = "mirror://sourceforge/osmo-pim/${name}.tar.gz"; + sha256 = "0y3bpsi18v3dxb3vsy0dr7cgf692g4p62l84hj9l2bpr2hbabgck"; + }; + + buildInputs = [ pkgconfig gtk libxml2 gettext libical libnotify libarchive + gtkspell webkitgtk2 libgringotts ]; + + meta = with stdenv.lib; { + description = "A handy personal organizer"; + homepage = http://clayo.org/osmo/; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ pSub ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 0552921ddcd..59090e1ced9 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -12060,6 +12060,8 @@ let opusTools = callPackage ../applications/audio/opus-tools { }; + osmo = callPackage ../applications/office/osmo { }; + pamixer = callPackage ../applications/audio/pamixer { }; pan = callPackage ../applications/networking/newsreaders/pan { From f8df92efbe5a99d4f5e196d5d548917c3ef062e0 Mon Sep 17 00:00:00 2001 From: Pascal Wittmann Date: Tue, 16 Jun 2015 20:22:55 +0200 Subject: [PATCH 73/90] scala-mode2: fix hash --- pkgs/applications/editors/emacs-modes/scala-mode/v2.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pkgs/applications/editors/emacs-modes/scala-mode/v2.nix b/pkgs/applications/editors/emacs-modes/scala-mode/v2.nix index 75861b0a988..ed3ac0e3da0 100644 --- a/pkgs/applications/editors/emacs-modes/scala-mode/v2.nix +++ b/pkgs/applications/editors/emacs-modes/scala-mode/v2.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation { src = fetchurl { url = "https://github.com/hvesalai/scala-mode2/archive/c154f1623f4696d26e1c88d19170e67bf6825837.zip"; - sha256 = "0fyxdpwz55n4c87v4ijqlbv6w1rybg5qrgsc40f6bs6sd747scy5"; + sha256 = "0im2ajb1iagjldh52j8wz4yby68rs3h7shrdf1pqy5ds7s4fa8cc"; }; buildInputs = [ unzip emacs ]; From 21bb2caf78fedeb77993b1f47187218f39cbb20a Mon Sep 17 00:00:00 2001 From: Andraz Brodnik Date: Tue, 16 Jun 2015 21:02:48 +0200 Subject: [PATCH 74/90] Update scrolls client (src hash change) --- pkgs/games/scrolls/default.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pkgs/games/scrolls/default.nix b/pkgs/games/scrolls/default.nix index da4a34cfec8..0f252a5043f 100644 --- a/pkgs/games/scrolls/default.nix +++ b/pkgs/games/scrolls/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation { src = fetchurl { url = "http://download.scrolls.com/client/linux.tar.gz"; - sha256 = "0gpwb8f1wrj6dfd9ffxga07whnxdgk66bj7j9gkbxlvrx3sj8zbp"; + sha256 = "164d13ce5b81b215a58bae5a0d024b4cf6e32c986ca57a2c9d4e80326edb5004"; }; libPath = stdenv.lib.makeLibraryPath [ From 6cd67cb218441255f8e130a48b4d2261222aa9a9 Mon Sep 17 00:00:00 2001 From: Bob van der Linden Date: Tue, 16 Jun 2015 21:26:47 +0200 Subject: [PATCH 75/90] goPackages: grpc: fix dependencies so that grpc builds --- pkgs/top-level/go-packages.nix | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/pkgs/top-level/go-packages.nix b/pkgs/top-level/go-packages.nix index 1181d8e2b60..b60ccfdb0de 100644 --- a/pkgs/top-level/go-packages.nix +++ b/pkgs/top-level/go-packages.nix @@ -652,6 +652,12 @@ let buildInputs = [ net oauth2 protobuf google-api-go-client grpc ]; }; + gcloud-golang-compute-metadata = buildGoPackage rec { + inherit (gcloud-golang) rev name goPackagePath src; + subPackages = [ "compute/metadata" ]; + buildInputs = [ net ]; + }; + ginkgo = buildGoPackage rec { rev = "5ed93e443a4b7dfe9f5e95ca87e6082e503021d2"; name = "ginkgo-${stdenv.lib.strings.substring 0 7 rev}"; @@ -1378,6 +1384,7 @@ let sha256 = "07dfpwwk68rrhxmqj69gq2ncsf3kfmn0zhlwscda0gc5gb57n5x1"; }; + buildInputs = [ gcloud-golang-compute-metadata ]; propagatedBuildInputs = [ http2 glog net protobuf oauth2 ]; }; From 01c2ad2525f2f5bc7c2790b8d10f0629bb793dbd Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Tue, 16 Jun 2015 14:28:12 -0700 Subject: [PATCH 76/90] screen: 4.2.1 -> 4.3.0 --- pkgs/tools/misc/screen/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/misc/screen/default.nix b/pkgs/tools/misc/screen/default.nix index d4377c14fad..e8a39623d9a 100644 --- a/pkgs/tools/misc/screen/default.nix +++ b/pkgs/tools/misc/screen/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, ncurses, pam ? null }: stdenv.mkDerivation rec { - name = "screen-4.2.1"; + name = "screen-4.3.0"; src = fetchurl { url = "mirror://gnu/screen/${name}.tar.gz"; - sha256 = "105hp6qdd8rl71p81klmxiz4mlb60kh9r7czayrx40g38x858s2l"; + sha256 = "0ilccnwszaxr9wbrx0swh4fisha2rj2jiq76fwqikmv0rjdyhr2i"; }; preConfigure = '' From bc4e1f3c1a628396632f491b465d15dd3a8b92c4 Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Tue, 16 Jun 2015 15:20:28 -0700 Subject: [PATCH 77/90] inetutils: 1.9.3 -> 1.9.4 --- pkgs/tools/networking/inetutils/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/networking/inetutils/default.nix b/pkgs/tools/networking/inetutils/default.nix index 251462ecc27..eca416b53d4 100644 --- a/pkgs/tools/networking/inetutils/default.nix +++ b/pkgs/tools/networking/inetutils/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, ncurses }: stdenv.mkDerivation rec { - name = "inetutils-1.9.3"; + name = "inetutils-1.9.4"; src = fetchurl { url = "mirror://gnu/inetutils/${name}.tar.gz"; - sha256 = "06dshajjpyi9sxi7qfki9gnp5r3nxvyvf81r81gx0x2qkqzqcxlj"; + sha256 = "05n65k4ixl85dc6rxc51b1b732gnmm8xnqi424dy9f1nz7ppb3xy"; }; buildInputs = [ ncurses /* for `talk' */ ]; From af21595ecaf0003496933b46beb9c841d828ca4e Mon Sep 17 00:00:00 2001 From: Charles Strahan Date: Tue, 2 Jun 2015 19:30:32 -0400 Subject: [PATCH 78/90] ghcjs: fix/bump git refs --- pkgs/development/compilers/ghcjs/default.nix | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) diff --git a/pkgs/development/compilers/ghcjs/default.nix b/pkgs/development/compilers/ghcjs/default.nix index 65988901de7..e4288b9a2cb 100644 --- a/pkgs/development/compilers/ghcjs/default.nix +++ b/pkgs/development/compilers/ghcjs/default.nix @@ -41,22 +41,22 @@ let version = "0.1.0"; ghcjsBoot = fetchgit { url = git://github.com/ghcjs/ghcjs-boot.git; - rev = "5c3ca2db12bd3e92d3eeaead8bcb6b347174a30f"; # 7.10 branch - sha256 = "0rpfb73bd0maccg3bjf51l23byy0h2i47wph99wblmkdp8ywxkpf"; + rev = "d3581514d0a5073f8220a2f5baafe6866faa35a0"; # 7.10 branch + sha256 = "1p13ifidpi7y1mjq5qv9229isfnsiklizci7i55sf83mp6wqdyvr"; fetchSubmodules = true; }; shims = fetchgit { url = git://github.com/ghcjs/shims.git; - rev = "6ada4bf1a084d1b80b993303d35ed863d219b031"; # master branch - sha256 = "0dhfnjj3rxdbb2m1pbnjc2yp4xcgsfdrsinljgdmg0hpqkafp4vc"; + rev = "9b196ff5ff13a24997011009b37c980c5534e24f"; # master branch + sha256 = "1zsfxka692fr3zb710il7g1sj64xwaxmasimciylb4wx84h7c30w"; }; in mkDerivation (rec { pname = "ghcjs"; inherit version; src = fetchgit { url = git://github.com/ghcjs/ghcjs.git; - rev = "15b7a34ddc11075a335e097f6109ad57ca03edab"; # master branch - sha256 = "0h6jdwd7lh3rkfsqpq3s6iavqkz1a88grzcxrcqj4rjilzdw288q"; + rev = "c1b6239b0289371dc6b8d17dfd845c14bd4dc490"; # master branch + sha256 = "0ncbk7m1l7cpdgmabm14d7f97fw3vy0hmpj4vs4kkwhhfjf6kp8s"; }; isLibrary = true; isExecutable = true; @@ -127,5 +127,4 @@ in mkDerivation (rec { license = stdenv.lib.licenses.bsd3; platforms = ghc.meta.platforms; maintainers = with stdenv.lib.maintainers; [ jwiegley cstrahan ]; - broken = true; # configure fails: "aeson >=0.7 && <0.9, syb ==0.4.*, text-binary ==0.1.*" }) From 061887e38a37e31521a67a02f575dd413b5eeddc Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Tue, 16 Jun 2015 23:36:58 -0700 Subject: [PATCH 79/90] xf86-video-intel: Kernel 4.0 match --- pkgs/servers/x11/xorg/overrides.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/servers/x11/xorg/overrides.nix b/pkgs/servers/x11/xorg/overrides.nix index e7a5bdb1018..b5b58ab320c 100644 --- a/pkgs/servers/x11/xorg/overrides.nix +++ b/pkgs/servers/x11/xorg/overrides.nix @@ -417,6 +417,7 @@ in xf86videointel = attrs: attrs // { buildInputs = attrs.buildInputs ++ [xorg.libXfixes]; + patches = [ ./xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch ]; }; xwd = attrs: attrs // { From 8310045b14a50b246378ed9ad934a03b47646fb9 Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Tue, 16 Jun 2015 23:56:15 -0700 Subject: [PATCH 80/90] Add missing patch --- ...tel-2.99.917-libdrm-kernel-4_0-crash.patch | 65 +++++++++++++++++++ 1 file changed, 65 insertions(+) create mode 100644 pkgs/servers/x11/xorg/xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch diff --git a/pkgs/servers/x11/xorg/xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch b/pkgs/servers/x11/xorg/xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch new file mode 100644 index 00000000000..ea3aa30ed13 --- /dev/null +++ b/pkgs/servers/x11/xorg/xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch @@ -0,0 +1,65 @@ +From 7fe2b2948652443ff43d907855bd7a051d54d309 Mon Sep 17 00:00:00 2001 +From: Chris Wilson +Date: Thu, 19 Mar 2015 23:14:17 +0000 +Subject: sna: Protect against ABI breakage in recent versions of libdrm + +Signed-off-by: Chris Wilson + +diff --git a/src/sna/kgem.c b/src/sna/kgem.c +index 11f0828..6f16cba 100644 +--- a/src/sna/kgem.c ++++ b/src/sna/kgem.c +@@ -182,6 +182,15 @@ struct local_i915_gem_caching { + #define LOCAL_IOCTL_I915_GEM_SET_CACHING DRM_IOW(DRM_COMMAND_BASE + LOCAL_I915_GEM_SET_CACHING, struct local_i915_gem_caching) + #define LOCAL_IOCTL_I915_GEM_GET_CACHING DRM_IOW(DRM_COMMAND_BASE + LOCAL_I915_GEM_GET_CACHING, struct local_i915_gem_caching) + ++struct local_i915_gem_mmap { ++ uint32_t handle; ++ uint32_t pad; ++ uint64_t offset; ++ uint64_t size; ++ uint64_t addr_ptr; ++}; ++#define LOCAL_IOCTL_I915_GEM_MMAP DRM_IOWR(DRM_COMMAND_BASE + DRM_I915_GEM_MMAP, struct local_i915_gem_mmap) ++ + struct local_i915_gem_mmap2 { + uint32_t handle; + uint32_t pad; +@@ -514,15 +523,15 @@ retry_wc: + + static void *__kgem_bo_map__cpu(struct kgem *kgem, struct kgem_bo *bo) + { +- struct drm_i915_gem_mmap mmap_arg; ++ struct local_i915_gem_mmap arg; + int err; + + retry: +- VG_CLEAR(mmap_arg); +- mmap_arg.handle = bo->handle; +- mmap_arg.offset = 0; +- mmap_arg.size = bytes(bo); +- if ((err = do_ioctl(kgem->fd, DRM_IOCTL_I915_GEM_MMAP, &mmap_arg))) { ++ VG_CLEAR(arg); ++ arg.handle = bo->handle; ++ arg.offset = 0; ++ arg.size = bytes(bo); ++ if ((err = do_ioctl(kgem->fd, LOCAL_IOCTL_I915_GEM_MMAP, &arg))) { + assert(err != EINVAL); + + if (__kgem_throttle_retire(kgem, 0)) +@@ -536,10 +545,10 @@ retry: + return NULL; + } + +- VG(VALGRIND_MAKE_MEM_DEFINED(mmap_arg.addr_ptr, bytes(bo))); ++ VG(VALGRIND_MAKE_MEM_DEFINED(arg.addr_ptr, bytes(bo))); + + DBG(("%s: caching CPU vma for %d\n", __FUNCTION__, bo->handle)); +- return bo->map__cpu = (void *)(uintptr_t)mmap_arg.addr_ptr; ++ return bo->map__cpu = (void *)(uintptr_t)arg.addr_ptr; + } + + static int gem_write(int fd, uint32_t handle, +-- +cgit v0.10.2 + From fcd7b6829b4dee251b36153259d954c2731af0d7 Mon Sep 17 00:00:00 2001 From: Peter Simons Date: Wed, 17 Jun 2015 11:11:25 +0200 Subject: [PATCH 81/90] nix-repl: bump version to add support for current versions of Nix --- pkgs/tools/package-management/nix-repl/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/package-management/nix-repl/default.nix b/pkgs/tools/package-management/nix-repl/default.nix index 35f4f36b473..feba569d398 100644 --- a/pkgs/tools/package-management/nix-repl/default.nix +++ b/pkgs/tools/package-management/nix-repl/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, nix, readline, boehmgc }: -let rev = "f92408136ed08804bab14b3e2a2def9b8effd7eb"; in +let rev = "45c6405a30bd1b2cb8ad6a94b23be8b10cf52069"; in stdenv.mkDerivation { name = "nix-repl-${lib.getVersion nix}-${lib.substring 0 7 rev}"; @@ -9,7 +9,7 @@ stdenv.mkDerivation { owner = "edolstra"; repo = "nix-repl"; inherit rev; - sha256 = "1vl36d3n7hrw4vy2n358zx210ygkj4lmd8zsiifna6x7w7q388bj"; + sha256 = "0c6sifpz8j898xznvy9dvm44w4nysqprrhs553in19jwwkf7kryp"; }; buildInputs = [ nix readline ]; From bb2d249706fd010c2850b159d701bbc4037fc23a Mon Sep 17 00:00:00 2001 From: Andrew Kelley Date: Wed, 17 Jun 2015 00:55:16 -0700 Subject: [PATCH 82/90] expose librhash --- pkgs/tools/security/rhash/default.nix | 19 +++++++++++++++++-- 1 file changed, 17 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/security/rhash/default.nix b/pkgs/tools/security/rhash/default.nix index 6a2710869bf..643053d9cac 100644 --- a/pkgs/tools/security/rhash/default.nix +++ b/pkgs/tools/security/rhash/default.nix @@ -1,7 +1,8 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "rhash-1.3.3"; + version = "1.3.3"; + name = "rhash-${version}"; src = fetchurl { url = "mirror://sourceforge/rhash/${name}-src.tar.gz"; @@ -10,9 +11,23 @@ stdenv.mkDerivation rec { installFlags = [ "DESTDIR=$(out)" "PREFIX=/" ]; + # we build the static library because of two makefile bugs + # * .h files installed for static library target only + # * .so.0 -> .so link only created in the static library install target + buildPhase = '' + make lib-shared lib-static build-shared + ''; + + # we don't actually want the static library, so we remove it after it + # gets installed + installPhase = '' + make DESTDIR="$out" PREFIX="/" install-shared install-lib-shared install-lib-static + rm $out/lib/librhash.a + ''; + meta = with stdenv.lib; { homepage = http://rhash.anz.ru; - description = "Console utility for computing and verifying hash sums of files"; + description = "Console utility and library for computing and verifying hash sums of files"; platforms = platforms.linux; }; } From d7530a0630f454ab77e82ea9de133976defb1aaf Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Wed, 17 Jun 2015 14:03:16 +0200 Subject: [PATCH 83/90] nxproxy: nxcomp: fix "negotiation in stage 10" error Apply backported upstream patch. --- pkgs/tools/admin/nxproxy/default.nix | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/pkgs/tools/admin/nxproxy/default.nix b/pkgs/tools/admin/nxproxy/default.nix index 6da78f60630..e9fe8f8f9c7 100644 --- a/pkgs/tools/admin/nxproxy/default.nix +++ b/pkgs/tools/admin/nxproxy/default.nix @@ -17,6 +17,10 @@ stdenv.mkDerivation { maintainers = with maintainers; [ nckx ]; }; + patches = [ + ./0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch + ]; + buildInputs = [ autoreconfHook libxcomp ]; preAutoreconf = '' From 6563dd251fee81b50f5c27bc6e44c91829b51649 Mon Sep 17 00:00:00 2001 From: Mateusz Kowalczyk Date: Wed, 17 Jun 2015 14:44:44 +0100 Subject: [PATCH 84/90] tibia: update to 10.79 --- pkgs/games/tibia/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/games/tibia/default.nix b/pkgs/games/tibia/default.nix index 1e4d1ad7f3f..4d759c5f889 100644 --- a/pkgs/games/tibia/default.nix +++ b/pkgs/games/tibia/default.nix @@ -3,11 +3,11 @@ with stdenv.lib; assert stdenv.isi686; stdenv.mkDerivation { - name = "tibia-10.78"; + name = "tibia-10.79"; src = fetchurl { - url = http://static.tibia.com/download/tibia1078.tgz; - sha256 = "087yi8jzi8bn1fp3b8lpp913bzdwf5nszv5p5gr6hx9xyhjj97ax"; + url = http://static.tibia.com/download/tibia1079.tgz; + sha256 = "04wpg5hdfhcp12kk2va3jdijr2p9jfmfivgqrn3cnbblxi83k2sn"; }; shell = stdenv.shell; From f93d8425c3897467798742d5f9ba871dca4a8e47 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Wed, 17 Jun 2015 15:40:46 +0200 Subject: [PATCH 85/90] Installer test: Fix booting from SCSI This is required by the GRUB 1 test. --- nixos/modules/virtualisation/qemu-vm.nix | 25 ++++++++++++++++++++---- nixos/tests/installer.nix | 5 ++++- 2 files changed, 25 insertions(+), 5 deletions(-) diff --git a/nixos/modules/virtualisation/qemu-vm.nix b/nixos/modules/virtualisation/qemu-vm.nix index dcb498493fa..15b0da3bab7 100644 --- a/nixos/modules/virtualisation/qemu-vm.nix +++ b/nixos/modules/virtualisation/qemu-vm.nix @@ -62,7 +62,7 @@ let extraDisks="" ${flip concatMapStrings cfg.emptyDiskImages (size: '' ${pkgs.qemu_kvm}/bin/qemu-img create -f qcow2 "empty$idx.qcow2" "${toString size}M" - extraDisks="$extraDisks -drive index=$idx,file=$(pwd)/empty$idx.qcow2,if=virtio,werror=report" + extraDisks="$extraDisks -drive index=$idx,file=$(pwd)/empty$idx.qcow2,if=${cfg.qemu.diskInterface},werror=report" idx=$((idx + 1)) '')} @@ -76,14 +76,14 @@ let -virtfs local,path=$TMPDIR/xchg,security_model=none,mount_tag=xchg \ -virtfs local,path=''${SHARED_DIR:-$TMPDIR/xchg},security_model=none,mount_tag=shared \ ${if cfg.useBootLoader then '' - -drive index=0,id=drive1,file=$NIX_DISK_IMAGE,if=virtio,cache=writeback,werror=report \ + -drive index=0,id=drive1,file=$NIX_DISK_IMAGE,if=${cfg.qemu.diskInterface},cache=writeback,werror=report \ -drive index=1,id=drive2,file=$TMPDIR/disk.img,media=disk \ ${if cfg.useEFIBoot then '' -pflash $TMPDIR/bios.bin \ '' else '' ''} '' else '' - -drive index=0,id=drive1,file=$NIX_DISK_IMAGE,if=virtio,cache=writeback,werror=report \ + -drive index=0,id=drive1,file=$NIX_DISK_IMAGE,if=${cfg.qemu.diskInterface},cache=writeback,werror=report \ -kernel ${config.system.build.toplevel}/kernel \ -initrd ${config.system.build.toplevel}/initrd \ -append "$(cat ${config.system.build.toplevel}/kernel-params) init=${config.system.build.toplevel}/init regInfo=${regInfo} ${kernelConsole} $QEMU_KERNEL_PARAMS" \ @@ -207,7 +207,7 @@ in virtualisation.bootDevice = mkOption { type = types.str; - default = "/dev/vda"; + example = "/dev/vda"; description = '' The disk to be used for the root filesystem. @@ -318,6 +318,17 @@ in to keep the default runtime behaviour. ''; }; + + diskInterface = + mkOption { + default = "virtio"; + example = "scsi"; + type = types.str; + description = '' + The interface used for the virtual hard disks + (virtio or scsi). + ''; + }; }; virtualisation.useBootLoader = @@ -393,6 +404,12 @@ in fi ''; + boot.initrd.availableKernelModules = + optional (cfg.qemu.diskInterface == "scsi") "sym53c8xx"; + + virtualisation.bootDevice = + mkDefault (if cfg.qemu.diskInterface == "scsi" then "/dev/sda" else "/dev/vda"); + virtualisation.pathsInNixDB = [ config.system.build.toplevel ]; virtualisation.qemu.options = [ "-vga std" "-usbdevice tablet" ]; diff --git a/nixos/tests/installer.nix b/nixos/tests/installer.nix index 4feed56cd67..32be1ea23b9 100644 --- a/nixos/tests/installer.nix +++ b/nixos/tests/installer.nix @@ -175,7 +175,10 @@ let # installer. This ensures the target disk (/dev/vda) is # the same during and after installation. virtualisation.emptyDiskImages = [ 512 ]; - virtualisation.bootDevice = "/dev/vdb"; + virtualisation.bootDevice = + if grubVersion == 1 then "/dev/sdb" else "/dev/vdb"; + virtualisation.qemu.diskInterface = + if grubVersion == 1 then "scsi" else "virtio"; hardware.enableAllFirmware = mkForce false; From ee3768b9ba78fed67c95b8baa67355cd0304fe5c Mon Sep 17 00:00:00 2001 From: rushmorem Date: Wed, 17 Jun 2015 17:01:31 +0200 Subject: [PATCH 86/90] Make it possible to boot NixOS from a SCSI Disk on KVM Currently NixOS can't boot from a SCSI disk as a KVM Guest. I found this out while installing it on the new [Linode KVM platform](https://www.linode.com/docs/platform/kvm#custom-kernel-configuration). --- nixos/modules/profiles/qemu-guest.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nixos/modules/profiles/qemu-guest.nix b/nixos/modules/profiles/qemu-guest.nix index 79890aa7f17..759fdb7f8e5 100644 --- a/nixos/modules/profiles/qemu-guest.nix +++ b/nixos/modules/profiles/qemu-guest.nix @@ -4,7 +4,7 @@ { config, pkgs, ... }: { - boot.initrd.availableKernelModules = [ "virtio_net" "virtio_pci" "virtio_blk" "9p" "9pnet_virtio" ]; + boot.initrd.availableKernelModules = [ "virtio_net" "virtio_pci" "virtio_blk" "virtio_scsi" "9p" "9pnet_virtio" ]; boot.initrd.kernelModules = [ "virtio_balloon" "virtio_console" "virtio_rng" ]; boot.initrd.postDeviceCommands = From 3d2a2fdd6ff836219c0003e9a105e5c8258bde3e Mon Sep 17 00:00:00 2001 From: Rok Garbas Date: Wed, 17 Jun 2015 17:50:53 +0200 Subject: [PATCH 87/90] pythonPackages: pelican upgrade to 3.6.0 and added ghp-import package - added ghc-import, smartypants and typogrify packages. last 2 needed as a dependency for pelican buildInputs - updated pelican to 3.6.0 and enable tests - added myself (garbas) as maintainer to bunch of packages which I use. - removed usage if python.isPypy and replace it with isPyPy --- pkgs/top-level/python-packages.nix | 117 +++++++++++++++++++++++------ 1 file changed, 94 insertions(+), 23 deletions(-) diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 9d2d1add713..e829be5a21e 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -1305,6 +1305,7 @@ let homepage = http://pythonhosted.org/blinker/; description = "Fast, simple object-to-object and broadcast signaling"; license = licenses.mit; + maintainers = with maintainers; [ garbas ]; }; }; @@ -4904,8 +4905,9 @@ let doCheck = false; meta = { - homepage = http://docutils.sourceforge.net/; description = "An open-source text processing system for processing plaintext documentation into useful formats, such as HTML or LaTeX"; + homepage = http://docutils.sourceforge.net/; + maintainers = with maintainers; [ garbas ]; }; }; @@ -5089,8 +5091,9 @@ let propagatedBuildInputs = with self; [ six pytz ]; meta = { - homepage = https://github.com/dmdm/feedgenerator-py3k.git; description = "Standalone version of django.utils.feedgenerator, compatible with Py3k"; + homepage = https://github.com/dmdm/feedgenerator-py3k.git; + maintainers = with maintainers; [ garbas ]; }; }); @@ -6430,7 +6433,7 @@ let sha256 = "2e24ac5d004db5714976a04ac0e80c6df6e47e98c354cb2c0d82f8879d4f8fdb"; }; - propagatedBuildInputs = with self; [ self.markupsafe ]; + propagatedBuildInputs = with self; [ markupsafe ]; meta = { homepage = http://jinja.pocoo.org/; @@ -6442,7 +6445,7 @@ let an optional sandboxed environment. ''; platforms = platforms.all; - maintainers = with maintainers; [ pierron ]; + maintainers = with maintainers; [ pierron garbas ]; }; }; @@ -6856,8 +6859,8 @@ let meta = { description = "Implements a XML/HTML/XHTML Markup safe string"; homepage = http://dev.pocoo.org; - license = "BSD"; - maintainers = with maintainers; [ iElectric ]; + license = licenses.bsd3; + maintainers = with maintainers; [ iElectric garbas ]; }; }; @@ -8434,33 +8437,46 @@ let pelican = buildPythonPackage rec { name = "pelican-${version}"; - version = "3.5.0"; + version = "3.6.0"; + disabled = isPy26; - src = pkgs.fetchurl { - url = "https://pypi.python.org/packages/source/p/pelican/${name}.tar.gz"; - sha256 = "0dl8i26sa20iijlg3z9gxn3p6f1d9v44b9742929xfaqwj4amvdp"; + src = pkgs.fetchFromGitHub { + owner = "getpelican"; + repo = "pelican"; + rev = version; + sha256 = "0a9r90d85rn2cvl6yyk6q5i5kwz9igfj8fdwi37zsx4ijhmn2b5j"; }; - preConfigure = '' - export LC_ALL="en_US.UTF-8" - ''; - - # Test data not provided - #buildInputs = [nose mock]; - doCheck = false; - - buildInputs = [ pkgs.glibcLocales ]; + buildInputs = with self; [ + pkgs.glibcLocales + pkgs.pandoc + pkgs.git + mock + nose + markdown + beautifulsoup4 + lxml + typogrify + ]; propagatedBuildInputs = with self; [ jinja2 pygments docutils pytz unidecode six dateutil feedgenerator blinker pillow beautifulsoup4 markupsafe ]; + postPatch= '' + sed -i -e "s|'git'|'${pkgs.git}/bin/git'|" pelican/tests/test_pelican.py + ''; + + preConfigure = '' + export LC_ALL="en_US.UTF-8" + ''; + meta = { - homepage = http://getpelican.com/; description = "A tool to generate a static blog from reStructuredText or Markdown input files"; + homepage = "http://getpelican.com/"; license = licenses.agpl3; - maintainers = with maintainers; [ offline prikhi ]; + maintainers = with maintainers; [ offline prikhi garbas ]; }; }; @@ -9635,7 +9651,7 @@ let homepage = http://pygments.org/; description = "A generic syntax highlighter"; license = licenses.bsd2; - maintainers = with maintainers; [ nckx ]; + maintainers = with maintainers; [ nckx garbas ]; }; }; @@ -14191,7 +14207,7 @@ let md5 = "6c73c5b668a67fdc116a25b884058ed9"; }; - doCheck = !(python.isPypy or false); + doCheck = !isPyPy; propagatedBuildInputs = with self; [ zope_interface zope_exceptions zope_location ]; @@ -15889,4 +15905,59 @@ let }; }; + ghp-import = buildPythonPackage rec { + version = "0.4.1"; + name = "ghp-import-${version}"; + src = pkgs.fetchurl { + url = "https://pypi.python.org/packages/source/g/ghp-import/${name}.tar.gz"; + md5 = "99e018372990c03ab355aa62c34965c5"; + }; + disabled = isPyPy; + buildInputs = [ pkgs.glibcLocales ]; + preConfigure = '' + export LC_ALL="en_US.UTF-8" + ''; + meta = { + description = "Copy your docs directly to the gh-pages branch."; + homepage = "http://github.com/davisp/ghp-import"; + license = "Tumbolia Public License"; + maintainers = with maintainers; [ garbas ]; + }; + }; + + typogrify = buildPythonPackage rec { + name = "typogrify-2.0.7"; + src = pkgs.fetchurl { + url = "https://pypi.python.org/packages/source/t/typogrify/${name}.tar.gz"; + md5 = "63f38f80531996f187d2894cc497ba08"; + }; + disabled = isPyPy; + propagatedBuildInputs = with self; [ smartypants ]; + meta = { + description = "Filters to enhance web typography, including support for Django & Jinja templates"; + homepage = "https://github.com/mintchaos/typogrify"; + license = licenses.bsd3; + maintainers = with maintainers; [ garbas ]; + }; + }; + + smartypants = buildPythonPackage rec { + version = "1.8.6"; + name = "smartypants-${version}"; + src = pkgs.fetchhg { + url = "https://bitbucket.org/livibetter/smartypants.py"; + rev = "v${version}"; + sha256 = "1cmzz44d2hm6y8jj2xcq1wfr26760gi7iq92ha8xbhb1axzd7nq6"; + }; + disabled = isPyPy; + buildInputs = with self; [ ]; #docutils pygments ]; + meta = { + description = "Python with the SmartyPants"; + homepage = "https://bitbucket.org/livibetter/smartypants.py"; + license = licenses.bsd3; + maintainers = with maintainers; [ garbas ]; + }; + }; + + }; in pythonPackages From 8170e74d9f3bad81dfc8dbe7ba0ef4dd760a6f8b Mon Sep 17 00:00:00 2001 From: Rushmore Mushambi Date: Wed, 17 Jun 2015 19:13:08 +0200 Subject: [PATCH 88/90] Revert "Make it possible to boot NixOS from a SCSI Disk on KVM" --- nixos/modules/profiles/qemu-guest.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nixos/modules/profiles/qemu-guest.nix b/nixos/modules/profiles/qemu-guest.nix index 759fdb7f8e5..79890aa7f17 100644 --- a/nixos/modules/profiles/qemu-guest.nix +++ b/nixos/modules/profiles/qemu-guest.nix @@ -4,7 +4,7 @@ { config, pkgs, ... }: { - boot.initrd.availableKernelModules = [ "virtio_net" "virtio_pci" "virtio_blk" "virtio_scsi" "9p" "9pnet_virtio" ]; + boot.initrd.availableKernelModules = [ "virtio_net" "virtio_pci" "virtio_blk" "9p" "9pnet_virtio" ]; boot.initrd.kernelModules = [ "virtio_balloon" "virtio_console" "virtio_rng" ]; boot.initrd.postDeviceCommands = From d9c56c696f2b05571a6b9b8db1f7e0d83081e852 Mon Sep 17 00:00:00 2001 From: rushmorem Date: Wed, 17 Jun 2015 19:26:17 +0200 Subject: [PATCH 89/90] Replaces https://github.com/NixOS/nixpkgs/pull/8368 --- nixos/modules/profiles/all-hardware.nix | 2 +- nixos/modules/profiles/qemu-guest.nix | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nixos/modules/profiles/all-hardware.nix b/nixos/modules/profiles/all-hardware.nix index 6385ee69500..99b45228ce4 100644 --- a/nixos/modules/profiles/all-hardware.nix +++ b/nixos/modules/profiles/all-hardware.nix @@ -40,7 +40,7 @@ "ohci1394" "sbp2" # Virtio (QEMU, KVM etc.) support. - "virtio_net" "virtio_pci" "virtio_blk" "virtio_balloon" "virtio_console" + "virtio_net" "virtio_pci" "virtio_blk" "virtio_scsi" "virtio_balloon" "virtio_console" # Keyboards "usbhid" "hid_apple" "hid_logitech_dj" "hid_lenovo_tpkbd" "hid_roccat" diff --git a/nixos/modules/profiles/qemu-guest.nix b/nixos/modules/profiles/qemu-guest.nix index 79890aa7f17..759fdb7f8e5 100644 --- a/nixos/modules/profiles/qemu-guest.nix +++ b/nixos/modules/profiles/qemu-guest.nix @@ -4,7 +4,7 @@ { config, pkgs, ... }: { - boot.initrd.availableKernelModules = [ "virtio_net" "virtio_pci" "virtio_blk" "9p" "9pnet_virtio" ]; + boot.initrd.availableKernelModules = [ "virtio_net" "virtio_pci" "virtio_blk" "virtio_scsi" "9p" "9pnet_virtio" ]; boot.initrd.kernelModules = [ "virtio_balloon" "virtio_console" "virtio_rng" ]; boot.initrd.postDeviceCommands = From d4fc2b4d99122ba6592835aa84f659b22aeea433 Mon Sep 17 00:00:00 2001 From: "William A. Kennington III" Date: Wed, 17 Jun 2015 11:47:36 -0700 Subject: [PATCH 90/90] nixos/install-grub: Fix grub1 installation --- .../modules/system/boot/loader/grub/install-grub.pl | 12 ++++++++++-- 1 file changed, 10 insertions(+), 2 deletions(-) diff --git a/nixos/modules/system/boot/loader/grub/install-grub.pl b/nixos/modules/system/boot/loader/grub/install-grub.pl index 9db4c4003c9..cad9013bf5a 100644 --- a/nixos/modules/system/boot/loader/grub/install-grub.pl +++ b/nixos/modules/system/boot/loader/grub/install-grub.pl @@ -502,6 +502,14 @@ my $efiDiffer = ($efiTarget eq \$prevGrubState->efi); my $efiMountPointDiffer = ($efiSysMountPoint eq \$prevGrubState->efiMountPoint); my $requireNewInstall = $devicesDiffer || $versionDiffer || $efiDiffer || $efiMountPointDiffer || (($ENV{'NIXOS_INSTALL_GRUB'} // "") eq "1"); +# install a symlink so that grub can detect the boot drive when set +# as the root directory +if (! -l "$bootPath/boot") { + if (-e "$bootPath/boot") { + unlink "$bootPath/boot"; + } + symlink ".", "$bootPath/boot"; +} # install non-EFI GRUB if (($requireNewInstall != 0) && ($efiTarget eq "no" || $efiTarget eq "both")) { @@ -509,10 +517,10 @@ if (($requireNewInstall != 0) && ($efiTarget eq "no" || $efiTarget eq "both")) { next if $dev eq "nodev"; print STDERR "installing the GRUB $grubVersion boot loader on $dev...\n"; if ($grubTarget eq "") { - system("$grub/sbin/grub-install", "--recheck", "--boot-directory=$bootPath", Cwd::abs_path($dev)) == 0 + system("$grub/sbin/grub-install", "--recheck", "--root-directory=$bootPath", Cwd::abs_path($dev)) == 0 or die "$0: installation of GRUB on $dev failed\n"; } else { - system("$grub/sbin/grub-install", "--recheck", "--boot-directory=$bootPath", "--target=$grubTarget", Cwd::abs_path($dev)) == 0 + system("$grub/sbin/grub-install", "--recheck", "--root-directory=$bootPath", "--target=$grubTarget", Cwd::abs_path($dev)) == 0 or die "$0: installation of GRUB on $dev failed\n"; } }