From 89162cdd29ebffbe34595d67464bd4771b3b83a0 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Fri, 23 Feb 2018 17:00:21 +0100
Subject: [PATCH] sage: explicitly use gfortran6

The recent change from gfortran=gfortran6 to gfortran=gfortran7 broke
the build.
---
 .../science/math/sage/default.nix             | 19 +++++++++++++------
 1 file changed, 13 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/science/math/sage/default.nix b/pkgs/applications/science/math/sage/default.nix
index ee646fee2c2..007cb68177e 100644
--- a/pkgs/applications/science/math/sage/default.nix
+++ b/pkgs/applications/science/math/sage/default.nix
@@ -21,7 +21,7 @@
 , bash
 , fetchurl
 , perl
-, gfortran
+, gfortran6
 , python
 , autoreconfHook
 , gettext
@@ -94,13 +94,13 @@ stdenv.mkDerivation rec {
     bash # needed for the build
     perl # needed for the build
     python # needed for the build
-    gfortran # needed to build giac, openblas
+    gfortran6 # needed to build giac, openblas
     autoreconfHook # needed to configure sage with prefix
     gettext # needed to build the singular spkg
-    hevea # needed to build the docs of the giac spkg
     which # needed in configure of mpir
-    # needed to build the docs of the giac spkg
     texinfo # needed to build maxima
+  ] ++ stdenv.lib.optionals(buildDocs) [
+    hevea # needed to build the docs of the giac spkg
     (texlive.combine { inherit (texlive)
       scheme-basic
       collection-pstricks # needed by giac
@@ -111,7 +111,7 @@ stdenv.mkDerivation rec {
     })
   ];
 
-  nativeBuildInputs = [ gfortran perl which ];
+  nativeBuildInputs = [ gfortran6 perl which ];
 
   patches = [
     # fix usages of /bin/rm
@@ -153,13 +153,13 @@ stdenv.mkDerivation rec {
     cd ..
     mv "$dir" "$out/sage-root"
 
+    export SAGE_SPKG_INSTALL_DOCS='no'
     cd "$out/sage-root" # build in target dir, since `make` is also `make install`
   ''
   + stdenv.lib.optionalString (buildDocs) ''
     mkdir -p "$doc"
     export SAGE_DOC="$doc"
     export SAGE_DOCBUILD_OPTS="--no-pdf-links -k"
-    export SAGE_SPKG_INSTALL_DOCS='no'
   '';
 
   buildFlags = if (buildDocs) then "doc" else "build";
@@ -191,6 +191,13 @@ stdenv.mkDerivation rec {
     rm -f "$out/sage-root/config.status"
     rm -f "$out/sage-root/build/make/Makefile-auto"
     rm -f "$out/sage-home/.sage/gap/libgap-workspace-"*
+    # Make sure unnessessary packages don't end up in the build closure
+    find "$out" \
+        -iname 'config.log' \
+        -delete \
+        -or -iname 'Makefile' \
+        -delete
+    rm -f "$out/lib/R/etc/Renviron"
     # Make sure all shebangs are properly patched
     bash $patchSageShebangs $out
   '';