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python3Packages.hdbscan: unbreak

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This commit is contained in:
Robert T. McGibbon 2021-03-23 18:30:55 -04:00
parent 7865db274b
commit 877c070415
1 changed files with 15 additions and 3 deletions
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18
pkgs/development/python-modules/hdbscan/default.nix
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@ -1,8 +1,9 @@
{ lib { lib
, buildPythonPackage , buildPythonPackage
, fetchpatch
, cython , cython
, numpy , numpy
, nose , pytestCheckHook
, scipy , scipy
, scikitlearn , scikitlearn
, fetchPypi , fetchPypi
@ -18,11 +19,22 @@ buildPythonPackage rec {
inherit pname version; inherit pname version;
sha256 = "e3a418d0d36874f7b6a1bf0b7461f3857fc13a525fd48ba34caed2fe8973aa26"; sha256 = "e3a418d0d36874f7b6a1bf0b7461f3857fc13a525fd48ba34caed2fe8973aa26";
}; };
patches = [
checkInputs = [ nose ]; # This patch fixes compatibility with numpy 1.20. It will be in the next release
# after 0.8.27
(fetchpatch {
url = "https://github.com/scikit-learn-contrib/hdbscan/commit/5b67a4fba39c5aebe8187a6a418da677f89a63e0.patch";
sha256 = "07d7jdwk0b8kgaqkifd529sarji01j1jiih7cfccc5kxmlb5py9h";
})
];
nativeBuildInputs = [ cython ]; nativeBuildInputs = [ cython ];
propagatedBuildInputs = [ numpy scipy scikitlearn joblib six ]; propagatedBuildInputs = [ numpy scipy scikitlearn joblib six ];
preCheck = ''
cd hdbscan/tests
rm __init__.py
'';
checkInputs = [ pytestCheckHook ];
meta = with lib; { meta = with lib; {
description = "Hierarchical Density-Based Spatial Clustering of Applications with Noise, a clustering algorithm with a scikit-learn compatible API"; description = "Hierarchical Density-Based Spatial Clustering of Applications with Noise, a clustering algorithm with a scikit-learn compatible API";