diff --git a/pkgs/applications/science/biology/aragorn/default.nix b/pkgs/applications/science/biology/aragorn/default.nix new file mode 100644 index 00000000000..a5f0ebc18ab --- /dev/null +++ b/pkgs/applications/science/biology/aragorn/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchurl }: + +stdenv.mkDerivation rec { + version = "1.2.38"; + pname = "aragorn"; + + src = fetchurl { + url = "http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/${pname}${version}.tgz"; + sha256 = "09i1rg716smlbnixfm7q1ml2mfpaa2fpn3hwjg625ysmfwwy712b"; + }; + + buildPhase = '' + gcc -O3 -ffast-math -finline-functions -o aragorn aragorn${version}.c + ''; + + installPhase = '' + mkdir -p $out/bin && cp aragorn $out/bin + mkdir -p $out/man/1 && cp aragorn.1 $out/man/1 + ''; + + meta = with stdenv.lib; { + description = "Detects tRNA, mtRNA, and tmRNA genes in nucleotide sequences"; + homepage = http://mbio-serv2.mbioekol.lu.se/ARAGORN/; + license = licenses.gpl2; + maintainers = [ maintainers.bzizou ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index ac1d8bb4a02..e030f78c46b 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -21941,6 +21941,8 @@ in ants = callPackage ../applications/science/biology/ants { }; + aragorn = callPackage ../applications/science/biology/aragorn { }; + archimedes = callPackage ../applications/science/electronics/archimedes { stdenv = overrideCC stdenv gcc49; };