diff --git a/pkgs/applications/science/biology/bedtools/default.nix b/pkgs/applications/science/biology/bedtools/default.nix new file mode 100644 index 00000000000..cd5c980b001 --- /dev/null +++ b/pkgs/applications/science/biology/bedtools/default.nix @@ -0,0 +1,25 @@ +{stdenv, fetchFromGitHub, zlib, python}: + +stdenv.mkDerivation rec { + name = "bedtools-${version}"; + version = "2.26.0"; + + src = fetchFromGitHub { + owner = "arq5x"; + repo = "bedtools2"; + rev = "v${version}"; + sha256 = "1j2ia68rmcw3qksjm5gvv1cb84bh76vmln59mvncr2an23f5a3ss"; + }; + + buildInputs = [ zlib python ]; + buildPhase = "make prefix=$out SHELL=${stdenv.shell} -j $NIX_BUILD_CORES"; + installPhase = "make prefix=$out SHELL=${stdenv.shell} install"; + + meta = with stdenv.lib; { + description = "A powerful toolset for genome arithmetic."; + license = licenses.gpl2; + homepage = https://bedtools.readthedocs.io/en/latest/; + maintainers = with maintainers; [ jbedo ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 12d9b13bc78..b3b78bf1827 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -16970,6 +16970,8 @@ with pkgs; stdenv = overrideCC stdenv gcc49; }; + bedtools = callPackage ../applications/science/biology/bedtools/default.nix { }; + bcftools = callPackage ../applications/science/biology/bcftools { }; ecopcr = callPackage ../applications/science/biology/ecopcr { };