public/nixpkgs
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Merge pull request #108432 from jbedo/fastp

Browse Source 
fastp: init 0.20.1
This commit is contained in:
Sandro 2021-01-07 21:44:33 +01:00 committed by GitHub
commit 7ae17783a7
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
2 changed files with 32 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

30
pkgs/applications/science/biology/fastp/default.nix Normal file
View File

@ -0,0 +1,30 @@
{ stdenv
, fetchFromGitHub
, zlib
}:
stdenv.mkDerivation rec {
pname = "fastp";
version = "0.20.1";
src = fetchFromGitHub {
owner = "OpenGene";
repo = "fastp";
rev = "v${version}";
sha256 = "sha256-pANwppkO9pfV9vctB7HmNCzYRtf+Xt+5HMKzvFuvyFM=";
};
buildInputs = [ zlib ];
installPhase = ''
install -D fastp $out/bin/fastp
'';
meta = with stdenv.lib; {
description = "Ultra-fast all-in-one FASTQ preprocessor";
license = licenses.mit;
homepage = "https://github.com/OpenGene/fastp";
maintainers = with maintainers; [ jbedo ];
platforms = platforms.x86_64;
};
}

2
pkgs/top-level/all-packages.nix
View File

@ -27005,6 +27005,8 @@ in
exonerate = callPackage ../applications/science/biology/exonerate { }; exonerate = callPackage ../applications/science/biology/exonerate { };
fastp = callPackage ../applications/science/biology/fastp { };
hisat2 = callPackage ../applications/science/biology/hisat2 { }; hisat2 = callPackage ../applications/science/biology/hisat2 { };
htslib = callPackage ../development/libraries/science/biology/htslib { }; htslib = callPackage ../development/libraries/science/biology/htslib { };