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igv: 2.4.19 -> 2.8.9

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Co-Authored-By: Silvan Mosberger <contact@infinisil.com>
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scalavision 2020-02-26 14:42:47 +01:00 committed by Silvan Mosberger
parent bee470ef9a
commit 78e89143d4
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1 changed files with 12 additions and 10 deletions
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22
pkgs/applications/science/biology/igv/default.nix
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@ -1,32 +1,34 @@
{ stdenv, fetchurl, unzip, jre }: { stdenv, fetchzip, jdk11 }:
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "igv"; pname = "igv";
version = "2.4.19"; version = "2.8.9";
src = fetchzip {
src = fetchurl { url = "https://data.broadinstitute.org/igv/projects/downloads/2.8/IGV_${version}.zip";
url = "https://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_${version}.zip"; sha256 = "1874w1xprv91caz1ymfxilq6inhj36xzx8j9m0mcyp0qfvfvyjp7";
sha256 = "048dgrhxcb854d24kyjkqz12bw04bsv49i5jawb75yzkswwfkb0z";
}; };
buildInputs = [ unzip jre ];
installPhase = '' installPhase = ''
mkdir -pv $out/{share,bin} mkdir -pv $out/{share,bin}
cp -Rv * $out/share/ cp -Rv * $out/share/
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
sed -i 's#java#${jre}/bin/java#g' $out/share/igv.sh sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools
ln -s $out/share/igv.sh $out/bin/igv ln -s $out/share/igv.sh $out/bin/igv
ln -s $out/share/igvtools $out/bin/igvtools
chmod +x $out/bin/igv chmod +x $out/bin/igv
chmod +x $out/bin/igvtools
''; '';
meta = with stdenv.lib; { meta = with stdenv.lib; {
homepage = https://www.broadinstitute.org/igv/; homepage = https://www.broadinstitute.org/igv/;
description = "A visualization tool for interactive exploration of genomic datasets"; description = "A visualization tool for interactive exploration of genomic datasets";
license = licenses.lgpl21; license = licenses.mit;
platforms = platforms.unix; platforms = platforms.unix;
maintainers = [ maintainers.mimame ]; maintainers = [ maintainers.mimame ];
}; };