public/nixpkgs
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Try to update slr

Browse Source 
Still fails to build because atlas doesn't provide full blas.

svn path=/nixpkgs/trunk/; revision=33164
This commit is contained in:
Yury G. Kudryashov 2012-03-16 17:15:52 +00:00
parent eefb2b6531
commit 75207a6a90
2 changed files with 7 additions and 15 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

18
pkgs/applications/science/biology/slr/default.nix
View File

@ -1,22 +1,16 @@
{stdenv, fetchurl, liblapack}: {stdenv, fetchurl, liblapack}:
stdenv.mkDerivation { stdenv.mkDerivation {
name = "slr"; name = "slr-1.4.2";
src = fetchurl { src = fetchurl {
url = http://www.ebi.ac.uk/goldman-srv/SLR/download/current/slr_source.tgz; url = http://www.ebi.ac.uk/goldman-srv/SLR/download/v1.4.2/slr_source.tgz;
sha256 = "0i81fv201p187mim4zakipxnhzqdvd3p5a9qa59xznc6458r2zsn"; sha256 = "03ak7jsz89zism6gx8fr1dwlwjgcmnrr9m6xgqpr0xzikxid02jp";
}; };
buildInputs = [ liblapack ]; buildInputs = [ liblapack ];
buildPhase = '' preConfigure = "mkdir bin; cd src";
cd src makeFlags = "-f Makefile.linux";
ls
make -fMakefile.linux
'';
installPhase = ''
mkdir -p $out/bin
cp -v ../Slr $out/bin
'';
meta = { meta = {
description = "Phylogenetic Analysis by Maximum Likelihood (PAML)"; description = "Phylogenetic Analysis by Maximum Likelihood (PAML)";

4
pkgs/top-level/all-packages.nix
View File

@ -8104,9 +8104,7 @@ let
paml = callPackage ../applications/science/biology/paml { }; paml = callPackage ../applications/science/biology/paml { };
/* slr = import ../applications/science/biology/slr { /* slr = callPackage ../applications/science/biology/slr { }; */
inherit fetchurl stdenv liblapack;
}; */
pal2nal = callPackage ../applications/science/biology/pal2nal { }; pal2nal = callPackage ../applications/science/biology/pal2nal { };