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Merge pull request #64289 from tadeokondrak/kallisto/update/0.46.0

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kallisto: 0.43.1 -> 0.46.0
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worldofpeace 2019-08-31 23:06:06 -04:00 committed by GitHub
commit 732c0a0d53
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1 changed files with 11 additions and 8 deletions
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17
pkgs/applications/science/biology/kallisto/default.nix
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@ -1,25 +1,28 @@
{ stdenv, fetchFromGitHub, cmake, hdf5, zlib }: { stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "kallisto"; pname = "kallisto";
version = "0.43.1"; version = "0.46.0";
src = fetchFromGitHub { src = fetchFromGitHub {
repo = "kallisto"; repo = "kallisto";
owner = "pachterlab"; owner = "pachterlab";
rev = "v${version}"; rev = "v${version}";
sha256 = "04697pf7jvy7vw126s1rn09q4iab9223jvb1nb0jn7ilwkq7pgwz"; sha256 = "09vgdqwpigl4x3sdw5vjfyknsllkli339mh8xapbf7ldm0jldfn9";
}; };
nativeBuildInputs = [ cmake ]; nativeBuildInputs = [ autoconf cmake ];
buildInputs = [ hdf5 zlib ]; buildInputs = [ hdf5 zlib ];
# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
enableParallelBuilding = false;
meta = with stdenv.lib; { meta = with stdenv.lib; {
description = "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data"; description = "Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data";
homepage = https://pachterlab.github.io/kallisto; homepage = "https://pachterlab.github.io/kallisto";
license = licenses.bsd2; license = licenses.bsd2;
platforms = platforms.linux; platforms = platforms.linux;
maintainers = [ maintainers.arcadio ]; maintainers = with maintainers; [ arcadio ];
}; };
} }