Merge master into staging-next

pkgs/development/python-modules/acme/default.nix

@@ -1,6 +1,6 @@
 { buildPythonPackage
 , certbot
-, nose
+, pytest
 , cryptography
 , pyasn1
 , pyopenssl
@@ -8,6 +8,7 @@
 , josepy
 , pytz
 , requests
+, requests-toolbelt
 , six
 , werkzeug
 , mock
@@ -20,13 +21,13 @@ buildPythonPackage rec {
   pname = "acme";
 
   propagatedBuildInputs = [
-    cryptography pyasn1 pyopenssl pyRFC3339 pytz requests six werkzeug mock
-    ndg-httpsclient josepy
+    cryptography pyasn1 pyopenssl pyRFC3339 pytz requests requests-toolbelt six
+    werkzeug mock ndg-httpsclient josepy
   ];
 
-  checkInputs = [ nose ];
+  checkInputs = [ pytest ];
 
-  postUnpack = "sourceRoot=\${sourceRoot}/acme";
+  sourceRoot = "source/${pname}";
 
   meta = certbot.meta // {
     description = "ACME protocol implementation in Python";

pkgs/development/python-modules/dateparser/default.nix

@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "dateparser";
-  version = "0.7.0";
+  version = "0.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "940828183c937bcec530753211b70f673c0a9aab831e43273489b310538dff86";
+    sha256 = "42d51be54e74a8e80a4d76d1fa6e4edd997098fce24ad2d94a2eab5ef247193e";
   };
 
   checkInputs = [ nose mock parameterized six glibcLocales ];

pkgs/development/python-modules/django/2_0.nix

@@ -1,43 +0,0 @@
-{ stdenv, buildPythonPackage, fetchPypi, substituteAll,
-  isPy3k,
-  geos, gdal, pytz,
-  withGdal ? false
-}:
-
-buildPythonPackage rec {
-  pname = "Django";
-  version = "2.0.10";
-
-  disabled = !isPy3k;
-
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "0292a7ad7d8ffc9cfc6a77f043d2e81f5bbc360c0c4a1686e130ef3432437d23";
-  };
-
-  patches = stdenv.lib.optionals withGdal [
-    (substituteAll {
-      src = ./1.10-gis-libs.template.patch;
-      geos = geos;
-      gdal = gdal;
-      extension = stdenv.hostPlatform.extensions.sharedLibrary;
-    })
-  ];
-
-  # patch only $out/bin to avoid problems with starter templates (see #3134)
-  postFixup = ''
-    wrapPythonProgramsIn $out/bin "$out $pythonPath"
-  '';
-
-  propagatedBuildInputs = [ pytz ];
-
-  # too complicated to setup
-  doCheck = false;
-
-  meta = with stdenv.lib; {
-    description = "A high-level Python Web framework";
-    homepage = https://www.djangoproject.com/;
-    license = licenses.bsd3;
-    maintainers = with maintainers; [ georgewhewell ];
-  };
-}

pkgs/development/python-modules/filetype/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "filetype";
-  version = "1.0.3";
+  version = "1.0.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "74ccbd9ca5c95aad5665eee2f173fb1930226a12f05b0bc7380b1d456a86fcdf";
+    sha256 = "366c50d0211798e696626f125134163ac2fff25a70131eec80a1d1a6196c1027";
   };
 
   checkPhase = ''

pkgs/development/python-modules/isbnlib/default.nix

@@ -1,21 +1,17 @@
 { lib
 , buildPythonPackage
-, fetchFromGitHub
+, fetchPypi
 , nose
 , coverage
 }:
 
 buildPythonPackage rec {
   pname = "isbnlib";
-  version = "3.9.4";
+  version = "3.9.5";
 
-  # PyPI tarball is missing LICENSE file
-  # See https://github.com/xlcnd/isbnlib/pull/53
-  src = fetchFromGitHub {
-    owner = "xlcnd";
-    repo = "isbnlib";
-    rev = "v${version}";
-    sha256 = "0gc0k5khf34b4zz56a9zc3rscdhj3bx849lbzgmzpji30sbyy1fh";
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "f500a0561b83a2982d3424d640243d05bda9716f4fe9a655e331f3a07ca02710";
   };
 
   checkInputs = [

pkgs/development/python-modules/mailman-rss/default.nix

@@ -0,0 +1,25 @@
+{ stdenv, python3Packages, withTwitter ? false}:
+
+python3Packages.buildPythonApplication rec {
+  pname = "mailman-rss";
+  version = "0.2.4";
+
+  src = python3Packages.fetchPypi {
+    inherit pname version;
+    sha256 = "1brrik70jyagxa9l0cfmlxvqpilwj1q655bphxnvjxyganxf4c00";
+  };
+
+  propagatedBuildInputs = with python3Packages; [ dateutil future requests beautifulsoup4 ]
+    ++ stdenv.lib.optional withTwitter python3Packages.twitter
+  ;
+
+  # No tests in Pypi Tarball
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Mailman archive -> rss converter";
+    homepage = https://github.com/kyamagu/mailman-rss;
+    license = licenses.mit;
+    maintainers = with maintainers; [ samueldr ];
+  };
+}

pkgs/development/python-modules/matplotlib/2.nix

@@ -1,6 +1,7 @@
 { stdenv, fetchPypi, python, buildPythonPackage, pycairo, backports_functools_lru_cache
 , which, cycler, dateutil, nose, numpy, pyparsing, sphinx, tornado, kiwisolver
 , freetype, libpng, pkgconfig, mock, pytz, pygobject3, functools32, subprocess32
+, fetchpatch
 , enableGhostscript ? false, ghostscript ? null, gtk3
 , enableGtk2 ? false, pygtk ? null, gobject-introspection
 , enableGtk3 ? false, cairo
@@ -47,9 +48,16 @@ buildPythonPackage rec {
     ++ stdenv.lib.optionals enableQt [ pyqt4 ]
     ++ stdenv.lib.optionals python.isPy2 [ functools32 subprocess32 ];
 
-  patches =
-    [ ./basedirlist.patch ] ++
-    stdenv.lib.optionals stdenv.isDarwin [ ./darwin-stdenv-2.2.3.patch ];
+  patches = [
+    ./basedirlist.patch
+
+    # https://github.com/matplotlib/matplotlib/pull/12478
+    (fetchpatch {
+      name = "numpy-1.16-compat.patch";
+      url = "https://github.com/matplotlib/matplotlib/commit/2980184d092382a40ab21f95b79582ffae6e19d6.patch";
+      sha256 = "1c0wj28zy8s5h6qiavx9zzbhlmhjwpzbc3fyyw9039mbnqk0spg2";
+    })
+  ] ++ stdenv.lib.optionals stdenv.isDarwin [ ./darwin-stdenv-2.2.3.patch ];
 
   # Matplotlib tries to find Tcl/Tk by opening a Tk window and asking the
   # corresponding interpreter object for its library paths. This fails if

pkgs/development/python-modules/moderngl/default.nix

@@ -0,0 +1,32 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, isPy3k
+, libGL
+, libX11
+}:
+
+buildPythonPackage rec {
+  pname = "moderngl";
+  version = "5.5.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0x8xblc3zybp7jw9cscpm4r5pmmilj9l4yi1rkxyf0y80kchlxq4";
+  };
+
+  disabled = !isPy3k;
+
+  buildInputs = [ libGL libX11 ];
+
+  # Tests need a display to run.
+  doCheck = false;
+
+  meta = with lib; {
+    homepage = https://github.com/cprogrammer1994/ModernGL;
+    description = "High performance rendering for Python 3";
+    license = licenses.mit;
+    platforms = platforms.linux; # should be mesaPlatforms, darwin build breaks.
+    maintainers = with maintainers; [ c0deaddict ];
+  };
+}

pkgs/development/python-modules/pybind11/default.nix

@@ -0,0 +1,26 @@
+{ lib, buildPythonPackage, fetchPypi }:
+
+buildPythonPackage rec {
+  pname = "pybind11";
+  version = "2.2.4";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1kz1z2cg3q901q9spkdhksmcfiskaghzmbb9ivr5mva856yvnak4";
+  };
+
+  # Current PyPi version does not include test suite
+  doCheck = false;
+
+  meta = {
+    homepage = https://github.com/pybind/pybind11;
+    description = "Seamless operability between C++11 and Python";
+    longDescription = ''
+      Pybind11 is a lightweight header-only library that exposes
+      C++ types in Python and vice versa, mainly to create Python
+      bindings of existing C++ code.
+    '';
+    license = lib.licenses.bsd3;
+    maintainers = [ lib.maintainers.yuriaisaka ];
+  };
+}

pkgs/development/python-modules/pyslurm/default.nix

@@ -1,4 +1,4 @@
-{ lib, fetchFromGitHub, buildPythonPackage, cython, slurm }:
+{ lib, fetchFromGitHub, fetchpatch, buildPythonPackage, cython, slurm }:
 
 buildPythonPackage rec {
   pname = "pyslurm";
@@ -11,6 +11,19 @@ buildPythonPackage rec {
     sha256 = "1rymx106xa99wd4n44s7jw0w41spg39y1ji4fgn01yk7wjfrdrwg";
   };
 
+  # Needed for patch below to apply
+  prePatch = ''
+    sed -i -e '/__max_slurm_hex_version__ = "0x1208/c__max_slurm_hex_version__ = "0x120804"' setup.py
+  '';
+
+  patches = [
+    # Implements a less strict slurm version check
+    (fetchpatch {
+      url = "https://github.com/PySlurm/pyslurm/commit/d3703f2d58b5177d29092fe1aae1f7a96da61765.diff";
+      sha256 = "1s41z9bhzhplgg08p1llc3i8zw20r1479s04y0l1vx0ak51b6w0k";
+    })
+  ];
+
   buildInputs = [ cython slurm ];
   setupPyBuildFlags = [ "--slurm-lib=${slurm}/lib" "--slurm-inc=${slurm.dev}/include" ];
 

pkgs/development/python-modules/pysnmp/default.nix

@@ -7,12 +7,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "4.4.8";
+  version = "4.4.9";
   pname = "pysnmp";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1c42qicrh56m49374kxna2s2nmdwna3yqgnz16frzj0dw7vxrrhk";
+    sha256 = "0h844s9p67z50bv83wdyf577759jg0xrj99fv4yrcvhjh2byblfm";
   };
 
   # NameError: name 'mibBuilder' is not defined
@@ -21,9 +21,9 @@ buildPythonPackage rec {
   propagatedBuildInputs = [ pyasn1 pycryptodomex pysmi ];
 
   meta = with stdenv.lib; {
-    homepage = http://pysnmp.sf.net;
+    homepage = http://snmplabs.com/pysnmp/index.html;
     description = "A pure-Python SNMPv1/v2c/v3 library";
     license = licenses.bsd2;
-    maintainers = with maintainers; [ koral ];
+    maintainers = with maintainers; [ primeos koral ];
   };
 }

pkgs/development/python-modules/scrapy/default.nix

@@ -1,8 +1,8 @@
 { stdenv, buildPythonPackage, fetchPypi, glibcLocales, mock, pytest, botocore,
   testfixtures, pillow, six, twisted, w3lib, lxml, queuelib, pyopenssl,
-  service-identity, parsel, pydispatcher, cssselect, lib, fetchpatch }:
+  service-identity, parsel, pydispatcher, cssselect, lib }:
 buildPythonPackage rec {
-  version = "1.5.1";
+  version = "1.6.0";
   pname = "Scrapy";
 
   checkInputs = [ glibcLocales mock pytest botocore testfixtures pillow ];
@@ -16,25 +16,21 @@ buildPythonPackage rec {
     # root and readonly. As a consequence scrapy can't edit the
     # project templates.
     ./permissions-fix.patch
-    # fix python37 issues. Remove with the next release
-    (fetchpatch {
-      url = https://github.com/scrapy/scrapy/commit/f4f39057cbbfa4daf66f82061e57101b88d88d05.patch;
-      sha256 = "1f761qkji362i20i5bzcxz44sihvl29prm02i5l2xyhgl1hp91hv";
-    })
   ];
 
   LC_ALL="en_US.UTF-8";
 
+  # Disable doctest plugin—enabled in the shipped pytest.ini—because it causes pytest to hang
   # Ignore proxy tests because requires mitmproxy
   # Ignore test_retry_dns_error because tries to resolve an invalid dns and weirdly fails with "Reactor was unclean"
   # Ignore xml encoding test on darwin because lxml can't find encodings https://bugs.launchpad.net/lxml/+bug/707396
   checkPhase = ''
-    pytest --ignore=tests/test_linkextractors_deprecated.py --ignore=tests/test_proxy_connect.py --deselect tests/test_crawl.py::CrawlTestCase::test_retry_dns_error ${lib.optionalString stdenv.isDarwin "--deselect tests/test_utils_iterators.py::LxmlXmliterTestCase::test_xmliter_encoding"}
+    pytest -p no:doctest --ignore=tests/test_linkextractors_deprecated.py --ignore=tests/test_proxy_connect.py --deselect tests/test_crawl.py::CrawlTestCase::test_retry_dns_error ${lib.optionalString stdenv.isDarwin "--deselect tests/test_utils_iterators.py::LxmlXmliterTestCase::test_xmliter_encoding"}
   '';
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5a398bf6818f87dcc817c919408a195f19ba46414ae12f259119336cfa862bb6";
+    sha256 = "558dfd10ac53cb324ecd7eefd3eac412161c7507c082b01b0bcd2c6e2e9f0766";
   };
 
   postInstall = ''

pkgs/development/python-modules/tornado/default.nix

@@ -42,6 +42,8 @@ buildPythonPackage rec {
     inherit pname sha256 version;
   };
 
+  __darwinAllowLocalNetworking = true;
+
   meta = {
     description = "A web framework and asynchronous networking library";
     homepage = http://www.tornadoweb.org/;