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lumpy: 0.3.0 -> 0.3.1

This commit is contained in:
Renato Alves 2020-10-29 13:27:45 +01:00
parent a28e5b0a4f
commit 6e19ed0a52
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GPG Key ID: C5D065FC72082AE9
1 changed files with 6 additions and 3 deletions
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9
pkgs/applications/science/biology/lumpy/default.nix
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@ -7,13 +7,14 @@ let
in stdenv.mkDerivation rec { in stdenv.mkDerivation rec {
pname = "lumpy"; pname = "lumpy";
version = "0.3.0"; version = "0.3.1";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "arq5x"; owner = "arq5x";
repo = "lumpy-sv"; repo = "lumpy-sv";
rev = version; rev = "v${version}";
sha256 = "0azhzvmh9az9jcq0xprlzdz6w16azgszv4kshb903bwbnqirmk18"; sha256 = "0r71sg7qch8r6p6dw995znrqdj6q49hjdylhzbib2qmv8nvglhs9";
fetchSubmodules = true;
}; };
nativeBuildInputs = [ which ]; nativeBuildInputs = [ which ];
@ -26,6 +27,8 @@ in stdenv.mkDerivation rec {
# Use Nix htslib over bundled version # Use Nix htslib over bundled version
sed -i 's/lumpy_filter: htslib/lumpy_filter:/' Makefile sed -i 's/lumpy_filter: htslib/lumpy_filter:/' Makefile
sed -i 's|../../lib/htslib/libhts.a|-lhts|' src/filter/Makefile sed -i 's|../../lib/htslib/libhts.a|-lhts|' src/filter/Makefile
# Also make sure we use the includes from Nix's htslib
sed -i 's|../../lib/htslib/|${htslib}|' src/filter/Makefile
''; '';
# Upstream's makefile doesn't have an install target # Upstream's makefile doesn't have an install target