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mpi: use mpi attribute consistently as the default MPI implementations

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Use the attribute mpi to provide a system wide default MPI
implementation. The default is openmpi (as before).
This now allows for overriding the MPI implentation by using
the overlay mechanism. Build all packages with mpich instead
of the default openmpi can now be achived like this:
self: super:
 {
   mpi = super.mpich;
 }

All derivations that have been using "mpi ? null" to provide optional
building with MPI have been change in the following way to allow for
optional builds with MPI:
{ ...
, mpi
, useMpi ? false
}
This commit is contained in:
Markus Kowalewski
2021-01-10 13:40:19 +01:00
parent f6a583eeec
commit 6dba41fbcb
27 changed files with 90 additions and 102 deletions
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10
pkgs/development/r-modules/default.nix
View File

@@ -237,7 +237,7 @@ let
BayesSAE = [ pkgs.gsl_1 ];
BayesVarSel = [ pkgs.gsl_1 ];
BayesXsrc = [ pkgs.readline.dev pkgs.ncurses ];
bigGP = [ pkgs.openmpi ];
bigGP = [ pkgs.mpi ];
bio3d = [ pkgs.zlib ];
BiocCheck = [ pkgs.which ];
Biostrings = [ pkgs.zlib ];
@@ -284,8 +284,8 @@ let
n1qn1 = [ pkgs.gfortran ];
odbc = [ pkgs.unixODBC ];
pander = [ pkgs.pandoc pkgs.which ];
pbdMPI = [ pkgs.openmpi ];
pbdPROF = [ pkgs.openmpi ];
pbdMPI = [ pkgs.mpi ];
pbdPROF = [ pkgs.mpi ];
pbdZMQ = lib.optionals stdenv.isDarwin [ pkgs.which ];
pdftools = [ pkgs.poppler.dev ];
phytools = [ pkgs.which ];
@@ -309,14 +309,14 @@ let
RGtk2 = [ pkgs.gtk2.dev ];
rhdf5 = [ pkgs.zlib ];
Rhdf5lib = [ pkgs.zlib ];
Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.openmpi pkgs.pcre.dev ];
Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.mpi pkgs.pcre.dev ];
Rhtslib = [ pkgs.zlib.dev pkgs.automake pkgs.autoconf pkgs.bzip2.dev pkgs.lzma.dev pkgs.curl.dev ];
rjags = [ pkgs.jags ];
rJava = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.jdk pkgs.libzip ];
Rlibeemd = [ pkgs.gsl_1 ];
rmatio = [ pkgs.zlib.dev ];
Rmpfr = [ pkgs.gmp pkgs.mpfr.dev ];
Rmpi = [ pkgs.openmpi ];
Rmpi = [ pkgs.mpi ];
RMySQL = [ pkgs.zlib pkgs.libmysqlclient pkgs.openssl.dev ];
RNetCDF = [ pkgs.netcdf pkgs.udunits ];
RODBC = [ pkgs.libiodbc ];