diff --git a/pkgs/applications/science/biology/minc-tools/default.nix b/pkgs/applications/science/biology/minc-tools/default.nix new file mode 100644 index 00000000000..41813dcda14 --- /dev/null +++ b/pkgs/applications/science/biology/minc-tools/default.nix @@ -0,0 +1,26 @@ +{ stdenv, fetchurl, perl, cmake, flex, bison, libminc }: + +stdenv.mkDerivation rec { + _name = "minc-tools"; + name = "${_name}-2.3.00"; + + src = fetchurl { + url = "https://github.com/BIC-MNI/${_name}/archive/${_name}-2-3-00.tar.gz"; + sha256 = "1d457vrwy2fl6ga2axnwn1cchkx2rmgixfzyb1zjxb06cxkfj1dm"; + }; + + nativeBuildInputs = [ cmake flex bison ] ++ (if doCheck then [ perl ] else [ ]); + buildInputs = [ libminc ]; + + cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" ]; + + checkPhase = "ctest"; + doCheck = true; + + meta = with stdenv.lib; { + homepage = https://github.com/BIC-MNI/minc-tools; + description = "Command-line utilities for working with MINC files"; + maintainers = with maintainers; [ bcdarwin ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index c7af2126a86..ffc27d76da5 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -15181,6 +15181,8 @@ let mrbayes = callPackage ../applications/science/biology/mrbayes { }; + minc_tools = callPackage ../applications/science/biology/minc-tools { }; + ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { }; paml = callPackage ../applications/science/biology/paml { };