diff --git a/pkgs/applications/science/logic/coq/configure.patch b/pkgs/applications/science/logic/coq/configure.patch
index 3989ea5c601..431cccac4b0 100644
--- a/pkgs/applications/science/logic/coq/configure.patch
+++ b/pkgs/applications/science/logic/coq/configure.patch
@@ -1,7 +1,7 @@
-diff -Nuar coq-8.3/configure coq-8.3.nixos/configure
---- coq-8.3/configure 2010-10-14 16:02:46.000000000 +0200
-+++ coq-8.3.nixos/configure 2010-11-04 09:57:16.000000000 +0100
-@@ -394,7 +394,6 @@
+diff -Nuar coq-8.3pl3-orig/configure coq-8.3pl3/configure
+--- coq-8.3pl3-orig/configure 2011-12-19 22:57:30.000000000 +0100
++++ coq-8.3pl3/configure 2012-03-17 16:38:16.000000000 +0100
+@@ -395,7 +395,6 @@
ocamlyaccexec=$CAMLBIN/ocamlyacc
ocamlmktopexec=$CAMLBIN/ocamlmktop
ocamlmklibexec=$CAMLBIN/ocamlmklib
@@ -9,12 +9,1104 @@ diff -Nuar coq-8.3/configure coq-8.3.nixos/configure
esac
if test ! -f "$CAMLC" ; then
-@@ -637,7 +636,7 @@
+@@ -628,7 +627,7 @@
no) LABLGTKLIB=+lablgtk2 # Pour le message
LABLGTKINCLUDES="-I $LABLGTKLIB";; # Pour le makefile
yes) LABLGTKLIB="$lablgtkdir" # Pour le message
- LABLGTKINCLUDES="-I \"$LABLGTKLIB\"";; # Pour le makefile
-+ LABLGTKINCLUDES="-I $LABLGTKLIB";; # Pour le makefile
++ LABLGTKINCLUDES="-I $LABLGTKLIB";; # Pour le makefile
esac;;
no) LABLGTKINCLUDES="";;
esac
+diff -Nuar coq-8.3pl3-orig/configure~ coq-8.3pl3/configure~
+--- coq-8.3pl3-orig/configure~ 1970-01-01 01:00:00.000000000 +0100
++++ coq-8.3pl3/configure~ 2011-12-19 22:57:30.000000000 +0100
+@@ -0,0 +1,1088 @@
++#!/bin/sh
++
++##################################
++#
++# Configuration script for Coq
++#
++##################################
++
++VERSION=8.3pl3
++VOMAGIC=08300
++STATEMAGIC=58300
++DATE=`LANG=C date +"%B %Y"`
++
++# Create the bin/ directory if non-existent
++test -d bin || mkdir bin
++
++# a local which command for sh
++which () {
++IFS=":" # set words separator in PATH to be ':' (it allows spaces in dirnames)
++for i in $PATH; do
++ if test -z "$i"; then i=.; fi
++ if [ -f "$i/$1" ] ; then
++ IFS=" "
++ echo "$i/$1"
++ break
++ fi
++done
++}
++
++usage () {
++ printf "Available options for configure are:\n"
++ echo "-help"
++ printf "\tDisplays this help page\n"
++ echo "-prefix
"
++ printf "\tSet installation directory to \n"
++ echo "-local"
++ printf "\tSet installation directory to the current source tree\n"
++ echo "-coqrunbyteflags"
++ printf "\tSet link flags for VM-dependent bytecode (coqtop)\n"
++ echo "-coqtoolsbyteflags"
++ printf "\tSet link flags for VM-independant bytecode (coqdep, coqdoc, ...)\n"
++ echo "-custom"
++ printf "\tGenerate all bytecode executables with -custom (not recommended)\n"
++ echo "-src"
++ printf "\tSpecifies the source directory\n"
++ echo "-bindir"
++ echo "-libdir"
++ echo "-mandir"
++ echo "-docdir"
++ printf "\tSpecifies where to install bin/lib/man/doc files resp.\n"
++ echo "-emacslib"
++ echo "-emacs"
++ printf "\tSpecifies where emacs files are to be installed\n"
++ echo "-coqdocdir"
++ printf "\tSpecifies where Coqdoc style files are to be installed\n"
++ echo "-camldir"
++ printf "\tSpecifies the path to the OCaml library\n"
++ echo "-lablgtkdir"
++ printf "\tSpecifies the path to the Lablgtk library\n"
++ echo "-camlp5dir"
++ printf "\tSpecifies where to look for the Camlp5 library and tells to use it\n"
++ echo "-arch"
++ printf "\tSpecifies the architecture\n"
++ echo "-opt"
++ printf "\tSpecifies whether or not to use OCaml *.opt optimized compilers\n"
++ echo "-natdynlink (yes|no)"
++ printf "\tSpecifies whether or not to use dynamic loading of native code\n"
++ echo "-coqide (opt|byte|no)"
++ printf "\tSpecifies whether or not to compile Coqide\n"
++ echo "-browser "
++ printf "\tUse to open URL %%s\n"
++ echo "-with-doc (yes|no)"
++ printf "\tSpecifies whether or not to compile the documentation\n"
++ echo "-with-geoproof (yes|no)"
++ printf "\tSpecifies whether or not to use Geoproof binding\n"
++ echo "-with-cc "
++ echo "-with-ar "
++ echo "-with-ranlib "
++ printf "\tTells configure where to find gcc/ar/ranlib executables\n"
++ echo "-byte-only"
++ printf "\tCompiles only bytecode version of Coq\n"
++ echo "-debug"
++ printf "\tAdd debugging information in the Coq executables\n"
++ echo "-profile"
++ printf "\tAdd profiling information in the Coq executables\n"
++ echo "-annotate"
++ printf "\tCompiles Coq with -dtypes option\n"
++}
++
++
++# Default OCaml binaries
++bytecamlc=ocamlc
++nativecamlc=ocamlopt
++ocamlmklibexec=ocamlmklib
++ocamlexec=ocaml
++ocamldepexec=ocamldep
++ocamldocexec=ocamldoc
++ocamllexexec=ocamllex
++ocamlyaccexec=ocamlyacc
++ocamlmktopexec=ocamlmktop
++camlp4oexec=camlp4o
++
++
++coq_debug_flag=
++coq_debug_flag_opt=
++coq_profile_flag=
++coq_annotate_flag=
++best_compiler=opt
++cflags="-fno-defer-pop -Wall -Wno-unused"
++natdynlink=yes
++
++gcc_exec=gcc
++ar_exec=ar
++ranlib_exec=ranlib
++
++local=false
++coqrunbyteflags_spec=no
++coqtoolsbyteflags_spec=no
++custom_spec=no
++src_spec=no
++prefix_spec=no
++bindir_spec=no
++libdir_spec=no
++mandir_spec=no
++docdir_spec=no
++emacslib_spec=no
++emacs_spec=no
++camldir_spec=no
++lablgtkdir_spec=no
++coqdocdir_spec=no
++arch_spec=no
++coqide_spec=no
++browser_spec=no
++wwwcoq_spec=no
++with_geoproof=false
++with_doc=all
++with_doc_spec=no
++force_caml_version=no
++force_caml_version_spec=no
++
++COQSRC=`pwd`
++
++# Parse command-line arguments
++
++while : ; do
++ case "$1" in
++ "") break;;
++ -help|--help) usage
++ exit;;
++ -prefix|--prefix) prefix_spec=yes
++ prefix="$2"
++ shift;;
++ -local|--local) local=true;;
++ -coqrunbyteflags|--coqrunbyteflags) coqrunbyteflags_spec=yes
++ coqrunbyteflags="$2"
++ shift;;
++ -coqtoolsbyteflags|--coqtoolsbyteflags) coqtoolsbyteflags_spec=yes
++ coqtoolsbyteflags="$2"
++ shift;;
++ -custom|--custom) custom_spec=yes
++ shift;;
++ -src|--src) src_spec=yes
++ COQSRC="$2"
++ shift;;
++ -bindir|--bindir) bindir_spec=yes
++ bindir="$2"
++ shift;;
++ -libdir|--libdir) libdir_spec=yes
++ libdir="$2"
++ shift;;
++ -mandir|--mandir) mandir_spec=yes
++ mandir="$2"
++ shift;;
++ -docdir|--docdir) docdir_spec=yes
++ docdir="$2"
++ shift;;
++ -emacslib|--emacslib) emacslib_spec=yes
++ emacslib="$2"
++ shift;;
++ -emacs |--emacs) emacs_spec=yes
++ emacs="$2"
++ shift;;
++ -coqdocdir|--coqdocdir) coqdocdir_spec=yes
++ coqdocdir="$2"
++ shift;;
++ -camldir|--camldir) camldir_spec=yes
++ camldir="$2"
++ shift;;
++ -lablgtkdir|--lablgtkdir) lablgtkdir_spec=yes
++ lablgtkdir="$2"
++ shift;;
++ -camlp5dir|--camlp5dir)
++ camlp5dir="$2"
++ shift;;
++ -arch|--arch) arch_spec=yes
++ arch=$2
++ shift;;
++ -opt|--opt) bytecamlc=ocamlc.opt
++ camlp4oexec=camlp4o # can't add .opt since dyn load'll be required
++ nativecamlc=ocamlopt.opt;;
++ -natdynlink|--natdynlink) case "$2" in
++ yes) natdynlink=yes;;
++ *) natdynlink=no
++ esac
++ shift;;
++ -coqide|--coqide) coqide_spec=yes
++ case "$2" in
++ byte|opt) COQIDE=$2;;
++ *) COQIDE=no
++ esac
++ shift;;
++ -browser|--browser) browser_spec=yes
++ BROWSER=$2
++ shift;;
++ -coqwebsite|--coqwebsite) wwwcoq_spec=yes
++ WWWCOQ=$2
++ shift;;
++ -with-doc|--with-doc) with_doc_spec=yes
++ case "$2" in
++ yes|all) with_doc=all;;
++ *) with_doc=no
++ esac
++ shift;;
++ -with-geoproof|--with-geoproof)
++ case "$2" in
++ yes) with_geoproof=true;;
++ no) with_geoproof=false;;
++ esac
++ shift;;
++ -with-cc|-with-gcc|--with-cc|--with-gcc)
++ gcc_spec=yes
++ gcc_exec=$2
++ shift;;
++ -with-ar|--with-ar)
++ ar_spec=yes
++ ar_exec=$2
++ shift;;
++ -with-ranlib|--with-ranlib)
++ ranlib_spec=yes
++ ranlib_exec=$2
++ shift;;
++ -byte-only|-byteonly|--byteonly|--byte-only) best_compiler=byte;;
++ -debug|--debug) coq_debug_flag=-g;;
++ -profile|--profile) coq_profile_flag=-p;;
++ -annotate|--annotate) coq_annotate_flag=-dtypes;;
++ -force-caml-version|--force-caml-version|-force-ocaml-version|--force-ocaml-version)
++ force_caml_version_spec=yes
++ force_caml_version=yes;;
++ *) echo "Unknown option \"$1\"." 1>&2; usage; exit 2;;
++ esac
++ shift
++done
++
++if [ $prefix_spec = yes -a $local = true ] ; then
++ echo "Options -prefix and -local are incompatible."
++ echo "Configure script failed!"
++ exit 1
++fi
++
++# compile date
++DATEPGM=`which date`
++case $DATEPGM in
++ "") echo "I can't find the program \"date\" in your path."
++ echo "Please give me the current date"
++ read COMPILEDATE;;
++ *) COMPILEDATE=`date +"%h %d %Y %H:%M:%S"`;;
++esac
++
++# Architecture
++
++case $arch_spec in
++ no)
++ # First we test if we are running a Cygwin system
++ if [ `uname -s | cut -c -6` = "CYGWIN" ] ; then
++ ARCH="win32"
++ else
++ # If not, we determine the architecture
++ if test -x /bin/arch ; then
++ ARCH=`/bin/arch`
++ elif test -x /usr/bin/arch ; then
++ ARCH=`/usr/bin/arch`
++ elif test -x /usr/ucb/arch ; then
++ ARCH=`/usr/ucb/arch`
++ elif test -x /bin/uname ; then
++ ARCH=`/bin/uname -s`
++ elif test -x /usr/bin/uname ; then
++ ARCH=`/usr/bin/uname -s`
++ else
++ echo "I can not automatically find the name of your architecture."
++ printf "%s"\
++ "Give me a name, please [win32 for Win95, Win98 or WinNT]: "
++ read ARCH
++ fi
++ fi;;
++ yes) ARCH=$arch
++esac
++
++# executable extension
++
++case $ARCH in
++ win32)
++ EXE=".exe"
++ DLLEXT=".dll";;
++ *) EXE=""
++ DLLEXT=".so"
++esac
++
++# Is the source tree checked out from a recognised
++# version control system ?
++if test -e .svn/entries ; then
++ checkedout=svn
++elif [ -d '{arch}' ]; then
++ checkedout=gnuarch
++elif [ -z "${GIT_DIR}" ] && [ -d .git ] || [ -d "${GIT_DIR}" ]; then
++ checkedout=git
++else
++ checkedout=0
++fi
++
++# make command
++
++MAKE=`which make`
++if [ "$MAKE" != "" ]; then
++ MAKEVERSION=`$MAKE -v | head -1 | cut -d" " -f3`
++ MAKEVERSIONMAJOR=`echo $MAKEVERSION | cut -d. -f1`
++ MAKEVERSIONMINOR=`echo $MAKEVERSION | cut -d. -f2`
++ if [ "$MAKEVERSIONMAJOR" -eq 3 -a "$MAKEVERSIONMINOR" -ge 81 ]; then
++ echo "You have GNU Make $MAKEVERSION. Good!"
++ else
++ OK="no"
++ if [ -x ./make ]; then
++ MAKEVERSION=`./make -v | head -1`
++ if [ "$MAKEVERSION" = "GNU Make 3.81" ]; then OK="yes"; fi
++ fi
++ if [ $OK = "no" ]; then
++ echo "GNU Make >= 3.81 is needed."
++ echo "Make 3.81 can be downloaded from ftp://ftp.gnu.org/gnu/make/make-3.81.tar.gz"
++ echo "then locally installed on a Unix-style system by issuing:"
++ echo " tar xzvf make-3.81.tar.gz"
++ echo " cd make-3.81"
++ echo " ./configure"
++ echo " make"
++ echo " mv make .."
++ echo " cd .."
++ echo "Restart then the configure script and later use ./make instead of make."
++ exit 1
++ else
++ echo "You have locally installed GNU Make 3.81. Good!"
++ fi
++ fi
++else
++ echo "Cannot find GNU Make >= 3.81."
++fi
++
++# Browser command
++
++if [ "$browser_spec" = "no" ]; then
++ case $ARCH in
++ win32) BROWSER='C:\PROGRA~1\INTERN~1\IEXPLORE %s' ;;
++ *) BROWSER='firefox -remote "OpenURL(%s,new-tab)" || firefox %s &' ;;
++ esac
++fi
++
++if [ "$wwwcoq_spec" = "no" ]; then
++ WWWCOQ="http://coq.inria.fr/"
++fi
++
++#########################################
++# Objective Caml programs
++
++case $camldir_spec in
++ no) CAMLC=`which $bytecamlc`
++ case "$CAMLC" in
++ "") echo "$bytecamlc is not present in your path!"
++ echo "Give me manually the path to the $bytecamlc executable [/usr/local/bin by default]: "
++ read CAMLC
++
++ case "$CAMLC" in
++ "") CAMLC=/usr/local/bin/$bytecamlc;;
++ */ocamlc|*/ocamlc.opt) true;;
++ */) CAMLC="${CAMLC}"$bytecamlc;;
++ *) CAMLC="${CAMLC}"/$bytecamlc;;
++ esac
++ esac
++ CAMLBIN=`dirname "$CAMLC"`;;
++ yes) CAMLC=$camldir/$bytecamlc
++
++ CAMLBIN=`dirname "$CAMLC"`
++ bytecamlc="$CAMLC"
++ nativecamlc=$CAMLBIN/$nativecamlc
++ ocamlexec=$CAMLBIN/ocaml
++ ocamldepexec=$CAMLBIN/ocamldep
++ ocamldocexec=$CAMLBIN/ocamldoc
++ ocamllexexec=$CAMLBIN/ocamllex
++ ocamlyaccexec=$CAMLBIN/ocamlyacc
++ ocamlmktopexec=$CAMLBIN/ocamlmktop
++ ocamlmklibexec=$CAMLBIN/ocamlmklib
++ camlp4oexec=$CAMLBIN/camlp4o
++esac
++
++if test ! -f "$CAMLC" ; then
++ echo "I can not find the executable '$CAMLC'. Have you installed it?"
++ echo "Configuration script failed!"
++ exit 1
++fi
++
++# Under Windows, OCaml only understands Windows filenames (C:\...)
++case $ARCH in
++ win32) CAMLBIN=`cygpath -m ${CAMLBIN}`;;
++esac
++
++CAMLVERSION=`"$bytecamlc" -version`
++
++case $CAMLVERSION in
++ 1.*|2.*|3.00|3.01|3.02|3.03|3.03alpha|3.04|3.05beta|3.05|3.06|3.07*|3.08*|3.09*)
++ echo "Your version of Objective-Caml is $CAMLVERSION."
++ if [ "$force_caml_version" = "yes" ]; then
++ echo "*Warning* You are compiling Coq with an outdated version of Objective-Caml."
++ else
++ echo " You need Objective-Caml 3.10.2 or later."
++ echo " Configuration script failed!"
++ exit 1
++ fi;;
++ ?*)
++ CAMLP4COMPAT="-loc loc"
++ echo "You have Objective-Caml $CAMLVERSION. Good!";;
++ *)
++ echo "I found the Objective-Caml compiler but cannot find its version number!"
++ echo "Is it installed properly?"
++ echo "Configuration script failed!"
++ exit 1;;
++esac
++
++CAMLTAG=OCAML`echo $CAMLVERSION | sed -e "s/\([1-9]\)\.\([0-9]*\).*/\1\2/g"`
++
++# For coqmktop & bytecode compiler
++
++case $ARCH in
++ win32) # Awfull trick to get around a ^M problem at the end of CAMLLIB
++ CAMLLIB=`"$CAMLC" -where | sed -e 's/^\(.*\)$/\1/'` ;;
++ *)
++ CAMLLIB=`"$CAMLC" -where`
++esac
++
++if [ "$coq_debug_flag" = "-g" ]; then
++ case $CAMLTAG in
++ OCAML31*)
++ # Compilation debug flag
++ coq_debug_flag_opt="-g"
++ ;;
++ esac
++fi
++
++# Native dynlink
++if [ "$natdynlink" = "yes" -a -f `"$CAMLC" -where`/dynlink.cmxa ]; then
++ HASNATDYNLINK=true
++else
++ HASNATDYNLINK=false
++fi
++
++case $HASNATDYNLINK,`uname -s`,`uname -r`,$CAMLVERSION in
++ true,Darwin,9.*,3.11.*) # ocaml 3.11.0 dynlink on MacOS 10.5 is buggy
++ NATDYNLINKFLAG=os5fixme;;
++ #Possibly a problem on 10.6.0/10.6.1/10.6.2
++ #May just be a 32 vs 64 problem for all 10.6.*
++ true,Darwin,10.0.*,3.11.*) # Possibly a problem on 10.6.0
++ NATDYNLINKFLAG=os5fixme;;
++ true,Darwin,10.1.*,3.11.*) # Possibly a problem on 10.6.1
++ NATDYNLINKFLAG=os5fixme;;
++ true,Darwin,10.2.*,3.11.*) # Possibly a problem on 10.6.2
++ NATDYNLINKFLAG=os5fixme;;
++ true,Darwin,10.*,3.11.*)
++ if [ `getconf LONG_BIT` = "32" ]; then
++ # Still a problem for x86_32
++ NATDYNLINKFLAG=os5fixme
++ else
++ # Not a problem for x86_64
++ NATDYNLINKFLAG=$HASNATDYNLINK
++ fi;;
++ *)
++ NATDYNLINKFLAG=$HASNATDYNLINK;;
++esac
++
++# Camlp4 / Camlp5 configuration
++
++if [ "$camlp5dir" != "" ]; then
++ CAMLP4=camlp5
++ CAMLP4LIB=$camlp5dir
++ if [ ! -f $camlp5dir/camlp5.cma ]; then
++ echo "Cannot find camlp5 libraries in $camlp5dir (camlp5.cma not found)."
++ echo "Configuration script failed!"
++ exit 1
++ fi
++ camlp4oexec=`echo $camlp4oexec | sed -e 's/4/5/'`
++else
++ case $CAMLTAG in
++ OCAML31*)
++ if [ -x "${CAMLLIB}/camlp5" ]; then
++ CAMLP4LIB=+camlp5
++ elif [ -x "${CAMLLIB}/site-lib/camlp5" ]; then
++ CAMLP4LIB=+site-lib/camlp5
++ else
++ echo "Objective Caml $CAMLVERSION found but no Camlp5 installed."
++ echo "Configuration script failed!"
++ exit 1
++ fi
++ CAMLP4=camlp5
++ camlp4oexec=`echo $camlp4oexec | sed -e 's/4/5/'`
++ ;;
++ *)
++ CAMLP4=camlp4
++ CAMLP4LIB=+camlp4
++ ;;
++ esac
++fi
++
++if [ "$CAMLP4" = "camlp5" ] && `$camlp4oexec -v 2>&1 | grep -q 5.00`; then
++ echo "Camlp5 version 5.00 not supported: versions 4.0x or >= 5.01 are OK"
++ echo "(depending also on your ocaml version)."
++ echo "Configuration script failed!"
++ exit 1
++fi
++
++
++case $CAMLP4LIB in
++ +*) FULLCAMLP4LIB=$CAMLLIB/`echo $CAMLP4LIB | cut -b 2-`;;
++ *) FULLCAMLP4LIB=$CAMLP4LIB;;
++esac
++
++# Assume that camlp(4|5) binaries are at the same place as ocaml ones
++# (this should become configurable some day)
++CAMLP4BIN=${CAMLBIN}
++
++# do we have a native compiler: test of ocamlopt and its version
++
++if [ "$best_compiler" = "opt" ] ; then
++ if test -e "$nativecamlc" || test -e "`which $nativecamlc`"; then
++ CAMLOPTVERSION=`"$nativecamlc" -v | sed -n -e 's|.*version* *\(.*\)$|\1|p' `
++ if [ "`uname -s`" = "Darwin" -a "$ARCH" = "i386" ]; then
++ case $CAMLOPTVERSION in
++ 3.09.3|3.1?*) ;;
++ *) echo "Native compilation on MacOS X Pentium requires Objective-Caml >= 3.09.3,"
++ best_compiler=byte
++ echo "only the bytecode version of Coq will be available."
++ esac
++ elif [ ! -f $FULLCAMLP4LIB/gramlib.cmxa ]; then
++ best_compiler=byte
++ echo "Cannot find native-code $CAMLP4,"
++ echo "only the bytecode version of Coq will be available."
++ else
++ if [ "$CAMLOPTVERSION" != "$CAMLVERSION" ] ; then
++ echo "Native and bytecode compilers do not have the same version!"
++ fi
++ echo "You have native-code compilation. Good!"
++ fi
++ else
++ best_compiler=byte
++ echo "You have only bytecode compilation."
++ fi
++fi
++
++# OS dependent libraries
++
++case $ARCH in
++ sun4*) OS=`uname -r`
++ case $OS in
++ 5*) OS="Sun Solaris $OS"
++ OSDEPLIBS="-cclib -lunix -cclib -lnsl -cclib -lsocket";;
++ *) OS="Sun OS $OS"
++ OSDEPLIBS="-cclib -lunix"
++ esac;;
++ alpha) OSDEPLIBS="-cclib -lunix";;
++ win32) OS="Win32"
++ OSDEPLIBS="-cclib -lunix"
++ cflags="-mno-cygwin $cflags";;
++ *) OSDEPLIBS="-cclib -lunix"
++esac
++
++# lablgtk2 and CoqIDE
++
++# -byte-only should imply -coqide byte, unless the user decides otherwise
++
++if [ "$best_compiler" = "byte" -a "$coqide_spec" = "no" ]; then
++ coqide_spec=yes
++ COQIDE=byte
++fi
++
++# Which coqide is asked ? which one is possible ?
++
++if [ "$coqide_spec" = "yes" -a "$COQIDE" = "no" ]; then
++ echo "CoqIde disabled as requested."
++else
++ case $lablgtkdir_spec in
++ no)
++ if [ -f "${CAMLLIB}/lablgtk2/glib.mli" ]; then
++ lablgtkdir=${CAMLLIB}/lablgtk2
++ elif [ -f "${CAMLLIB}/site-lib/lablgtk2/glib.mli" ]; then
++ lablgtkdir=${CAMLLIB}/site-lib/lablgtk2
++ fi;;
++ yes)
++ if [ ! -f "$lablgtkdir/glib.mli" ]; then
++ echo "Incorrect LablGtk2 library (glib.mli not found)."
++ echo "Configuration script failed!"
++ exit 1
++ fi;;
++ esac
++ if [ "$lablgtkdir" = "" ]; then
++ echo "LablGtk2 not found: CoqIde will not be available."
++ COQIDE=no
++ elif [ -z "`grep -w convert_with_fallback "$lablgtkdir/glib.mli"`" ]; then
++ echo "LablGtk2 found but too old: CoqIde will not be available."
++ COQIDE=no;
++ elif [ "$coqide_spec" = "yes" -a "$COQIDE" = "byte" ]; then
++ echo "LablGtk2 found, bytecode CoqIde will be used as requested."
++ COQIDE=byte
++ elif [ ! -f "${CAMLLIB}/threads/threads.cmxa" ]; then
++ echo "LablGtk2 found, no native threads: bytecode CoqIde will be available."
++ COQIDE=byte
++ else
++ echo "LablGtk2 found, native threads: native CoqIde will be available."
++ COQIDE=opt
++ fi
++fi
++
++case $COQIDE in
++ byte|opt)
++ case $lablgtkdir_spec in
++ no) LABLGTKLIB=+lablgtk2 # Pour le message
++ LABLGTKINCLUDES="-I $LABLGTKLIB";; # Pour le makefile
++ yes) LABLGTKLIB="$lablgtkdir" # Pour le message
++ LABLGTKINCLUDES="-I \"$LABLGTKLIB\"";; # Pour le makefile
++ esac;;
++ no) LABLGTKINCLUDES="";;
++esac
++
++# strip command
++
++case $ARCH in
++ win32)
++ # true -> strip : it exists under cygwin !
++ STRIPCOMMAND="strip";;
++ *)
++ if [ "$coq_profile_flag" = "-p" ] || [ "$coq_debug_flag" = "-g" ] ||
++ [ "`uname -s`" = "Darwin" -a "$HASNATDYNLINK" = "true" ]
++ then
++ STRIPCOMMAND="true"
++ else
++ STRIPCOMMAND="strip"
++ fi
++esac
++
++# mktexlsr
++#MKTEXLSR=`which mktexlsr`
++#case $MKTEXLSR in
++# "") MKTEXLSR=true;;
++#esac
++
++# "
++### Test if documentation can be compiled (latex, hevea)
++
++if test "$with_doc" = "all"
++then
++ for cmd in "latex" "hevea" ; do
++ if test ! -x "`which $cmd`"
++ then
++ echo "$cmd was not found; documentation will not be available"
++ with_doc=no
++ break
++ fi
++ done
++fi
++
++###########################################
++# bindir, libdir, mandir, docdir, etc.
++
++case $src_spec in
++ no) COQTOP=${COQSRC}
++esac
++
++# OCaml only understand Windows filenames (C:\...)
++case $ARCH in
++ win32) COQTOP=`cygpath -m ${COQTOP}`
++esac
++
++case $ARCH in
++ win32)
++ bindir_def='C:\coq\bin'
++ libdir_def='C:\coq\lib'
++ mandir_def='C:\coq\man'
++ docdir_def='C:\coq\doc'
++ emacslib_def='C:\coq\emacs'
++ coqdocdir_def='C:\coq\latex';;
++ *)
++ bindir_def=/usr/local/bin
++ libdir_def=/usr/local/lib/coq
++ mandir_def=/usr/local/man
++ docdir_def=/usr/local/share/doc/coq
++ emacslib_def=/usr/local/share/emacs/site-lisp
++ coqdocdir_def=/usr/local/share/texmf/tex/latex/misc;;
++esac
++
++emacs_def=emacs
++
++case $bindir_spec/$prefix_spec/$local in
++ yes/*/*) BINDIR=$bindir ;;
++ */yes/*) BINDIR=$prefix/bin ;;
++ */*/true) BINDIR=$COQTOP/bin ;;
++ *) printf "Where should I install the Coq binaries [$bindir_def]? "
++ read BINDIR
++ case $BINDIR in
++ "") BINDIR=$bindir_def;;
++ *) true;;
++ esac;;
++esac
++
++case $libdir_spec/$prefix_spec/$local in
++ yes/*/*) LIBDIR=$libdir;;
++ */yes/*)
++ case $ARCH in
++ win32) LIBDIR=$prefix ;;
++ *) LIBDIR=$prefix/lib/coq ;;
++ esac ;;
++ */*/true) LIBDIR=$COQTOP ;;
++ *) printf "Where should I install the Coq library [$libdir_def]? "
++ read LIBDIR
++ case $LIBDIR in
++ "") LIBDIR=$libdir_def;;
++ *) true;;
++ esac;;
++esac
++
++case $mandir_spec/$prefix_spec/$local in
++ yes/*/*) MANDIR=$mandir;;
++ */yes/*) MANDIR=$prefix/man ;;
++ */*/true) MANDIR=$COQTOP/man ;;
++ *) printf "Where should I install the Coq man pages [$mandir_def]? "
++ read MANDIR
++ case $MANDIR in
++ "") MANDIR=$mandir_def;;
++ *) true;;
++ esac;;
++esac
++
++case $docdir_spec/$prefix_spec/$local in
++ yes/*/*) DOCDIR=$docdir; HTMLREFMANDIR=$DOCDIR/html/refman;;
++ */yes/*) DOCDIR=$prefix/share/doc/coq; HTMLREFMANDIR=$DOCDIR/html/refman;;
++ */*/true) DOCDIR=$COQTOP/doc; HTMLREFMANDIR=$DOCDIR/refman/html;;
++ *) printf "Where should I install the Coq documentation [$docdir_def]? "
++ read DOCDIR
++ case $DOCDIR in
++ "") DOCDIR=$docdir_def; HTMLREFMANDIR=$DOCDIR/html/refman;;
++ *) true;;
++ esac;;
++esac
++
++case $emacslib_spec/$prefix_spec/$local in
++ yes/*/*) EMACSLIB=$emacslib;;
++ */yes/*)
++ case $ARCH in
++ win32) EMACSLIB=$prefix/emacs ;;
++ *) EMACSLIB=$prefix/share/emacs/site-lisp ;;
++ esac ;;
++ */*/true) EMACSLIB=$COQTOP/tools/emacs ;;
++ *) printf "Where should I install the Coq Emacs mode [$emacslib_def]? "
++ read EMACSLIB
++ case $EMACSLIB in
++ "") EMACSLIB=$emacslib_def;;
++ *) true;;
++ esac;;
++esac
++
++case $coqdocdir_spec/$prefix_spec/$local in
++ yes/*/*) COQDOCDIR=$coqdocdir;;
++ */yes/*)
++ case $ARCH in
++ win32) COQDOCDIR=$prefix/latex ;;
++ *) COQDOCDIR=$prefix/share/emacs/site-lisp ;;
++ esac ;;
++ */*/true) COQDOCDIR=$COQTOP/tools/coqdoc ;;
++ *) printf "Where should I install Coqdoc TeX/LaTeX files [$coqdocdir_def]? "
++ read COQDOCDIR
++ case $COQDOCDIR in
++ "") COQDOCDIR=$coqdocdir_def;;
++ *) true;;
++ esac;;
++esac
++
++# Determine if we enable -custom by default (Windows and MacOS)
++CUSTOM_OS=no
++if [ "$ARCH" = "win32" ] || [ "`uname -s`" = "Darwin" ]; then
++ CUSTOM_OS=yes
++fi
++
++BUILDLDPATH="# you might want to set CAML_LD_LIBRARY_PATH by hand!"
++case $coqrunbyteflags_spec/$local/$custom_spec/$CUSTOM_OS in
++ yes/*/*/*) COQRUNBYTEFLAGS="$coqrunbyteflags";;
++ */*/yes/*|*/*/*/yes) COQRUNBYTEFLAGS="-custom";;
++ */true/*/*) COQRUNBYTEFLAGS="-dllib -lcoqrun -dllpath '$COQTOP'/kernel/byterun";;
++ *)
++ COQRUNBYTEFLAGS="-dllib -lcoqrun -dllpath '$LIBDIR'"
++ BUILDLDPATH="export CAML_LD_LIBRARY_PATH='$COQTOP'/kernel/byterun";;
++esac
++case $coqtoolsbyteflags_spec/$custom_spec/$CUSTOM_OS in
++ yes/*/*) COQTOOLSBYTEFLAGS="$coqtoolsbyteflags";;
++ */yes/*|*/*/yes) COQTOOLSBYTEFLAGS="-custom";;
++ *) COQTOOLSBYTEFLAGS="";;
++esac
++
++# case $emacs_spec in
++# no) printf "Which Emacs command should I use to compile coq.el [$emacs_def]? "
++# read EMACS
++
++# case $EMACS in
++# "") EMACS=$emacs_def;;
++# *) true;;
++# esac;;
++# yes) EMACS=$emacs;;
++# esac
++
++
++
++###########################################
++# Summary of the configuration
++
++echo ""
++echo " Coq top directory : $COQTOP"
++echo " Architecture : $ARCH"
++if test ! -z "$OS" ; then
++ echo " Operating system : $OS"
++fi
++echo " Coq VM bytecode link flags : $COQRUNBYTEFLAGS"
++echo " Coq tools bytecode link flags : $COQTOOLSBYTEFLAGS"
++echo " OS dependent libraries : $OSDEPLIBS"
++echo " Objective-Caml/Camlp4 version : $CAMLVERSION"
++echo " Objective-Caml/Camlp4 binaries in : $CAMLBIN"
++echo " Objective-Caml library in : $CAMLLIB"
++echo " Camlp4 library in : $CAMLP4LIB"
++if test "$best_compiler" = opt ; then
++echo " Native dynamic link support : $HASNATDYNLINK"
++fi
++if test "$COQIDE" != "no"; then
++echo " Lablgtk2 library in : $LABLGTKLIB"
++fi
++if test "$with_doc" = "all"; then
++echo " Documentation : All"
++else
++echo " Documentation : None"
++fi
++echo " CoqIde : $COQIDE"
++echo " Web browser : $BROWSER"
++echo " Coq web site : $WWWCOQ"
++echo ""
++
++echo " Paths for true installation:"
++echo " binaries will be copied in $BINDIR"
++echo " library will be copied in $LIBDIR"
++echo " man pages will be copied in $MANDIR"
++echo " documentation will be copied in $DOCDIR"
++echo " emacs mode will be copied in $EMACSLIB"
++echo ""
++
++##################################################
++# Building the $COQTOP/dev/ocamldebug-coq file
++##################################################
++
++OCAMLDEBUGCOQ=$COQSRC/dev/ocamldebug-coq
++
++if test "$coq_debug_flag" = "-g" ; then
++ rm -f $OCAMLDEBUGCOQ
++ sed -e "s|COQTOPDIRECTORY|$COQTOP|" \
++ -e "s|COQLIBDIRECTORY|$LIBDIR|" \
++ -e "s|CAMLBINDIRECTORY|$CAMLBIN|" \
++ -e "s|CAMLP4LIBDIRECTORY|$FULLCAMLP4LIB|"\
++ $OCAMLDEBUGCOQ.template > $OCAMLDEBUGCOQ
++ chmod a-w,a+x $OCAMLDEBUGCOQ
++fi
++
++####################################################
++# Fixing lablgtk types (before/after 2.6.0)
++####################################################
++
++if [ ! "$COQIDE" = "no" ]; then
++ if grep "class view " "$lablgtkdir/gText.mli" | grep -q "\[>" ; then
++ if grep -q "?accepts_tab:bool" "$lablgtkdir/gText.mli" ; then
++ cp -f ide/undo_lablgtk_ge212.mli ide/undo.mli
++ else
++ cp -f ide/undo_lablgtk_ge26.mli ide/undo.mli
++ fi
++ else
++ cp -f ide/undo_lablgtk_lt26.mli ide/undo.mli
++ fi
++fi
++
++##############################################
++# Creation of configuration files
++##############################################
++
++mlconfig_file="$COQSRC/config/coq_config.ml"
++config_file="$COQSRC/config/Makefile"
++config_template="$COQSRC/config/Makefile.template"
++
++
++### Warning !!
++### After this line, be careful when using variables,
++### since some of them (e.g. $COQSRC) will be escaped
++
++
++# An escaped version of a variable
++escape_var () {
++"$ocamlexec" 2>&1 1>/dev/null < $mlconfig_file
++(* DO NOT EDIT THIS FILE: automatically generated by ../configure *)
++
++let local = $local
++let coqrunbyteflags = "$COQRUNBYTEFLAGS"
++let coqlib = "$LIBDIR"
++let coqsrc = "$COQSRC"
++let ocaml = "$ocamlexec"
++let ocamlc = "$bytecamlc"
++let ocamlopt = "$nativecamlc"
++let ocamlmklib = "$ocamlmklibexec"
++let ocamldep = "$ocamldepexec"
++let ocamldoc = "$ocamldocexec"
++let ocamlyacc = "$ocamlyaccexec"
++let ocamllex = "$ocamllexexec"
++let camlbin = "$CAMLBIN"
++let camllib = "$CAMLLIB"
++let camlp4 = "$CAMLP4"
++let camlp4o = "$camlp4oexec"
++let camlp4bin = "$CAMLP4BIN"
++let camlp4lib = "$CAMLP4LIB"
++let camlp4compat = "$CAMLP4COMPAT"
++let coqideincl = "$LABLGTKINCLUDES"
++let cflags = "$cflags"
++let best = "$best_compiler"
++let arch = "$ARCH"
++let has_coqide = "$COQIDE"
++let has_natdynlink = $HASNATDYNLINK
++let natdynlinkflag = "$NATDYNLINKFLAG"
++let osdeplibs = "$OSDEPLIBS"
++let version = "$VERSION"
++let caml_version = "$CAMLVERSION"
++let date = "$DATE"
++let compile_date = "$COMPILEDATE"
++let vo_magic_number = $VOMAGIC
++let state_magic_number = $STATEMAGIC
++let exec_extension = "$EXE"
++let with_geoproof = ref $with_geoproof
++let browser = "$BROWSER"
++let wwwcoq = "$WWWCOQ"
++let wwwrefman = wwwcoq ^ "distrib/" ^ version ^ "/refman/"
++let wwwstdlib = wwwcoq ^ "distrib/" ^ version ^ "/stdlib/"
++let localwwwrefman = "file://$HTMLREFMANDIR/"
++
++END_OF_COQ_CONFIG
++
++# to be sure printf is found on windows when spaces occur in PATH variable
++PRINTF=`which printf`
++
++# Subdirectories of theories/ added in coq_config.ml
++subdirs () {
++ (cd $1; find * \( -name .svn -prune \) -o \( -type d -exec $PRINTF "\"%s\";\n" {} \; \) >> "$mlconfig_file")
++}
++
++echo "let theories_dirs = [" >> "$mlconfig_file"
++subdirs theories
++echo "]" >> "$mlconfig_file"
++
++echo "let plugins_dirs = [" >> "$mlconfig_file"
++subdirs plugins
++echo "]" >> "$mlconfig_file"
++
++chmod a-w "$mlconfig_file"
++
++
++###############################################
++# Building the $COQTOP/config/Makefile file
++###############################################
++
++rm -f "$config_file"
++
++sed -e "s|LOCALINSTALLATION|$local|" \
++ -e "s|XCOQRUNBYTEFLAGS|$COQRUNBYTEFLAGS|" \
++ -e "s|XCOQTOOLSBYTEFLAGS|$COQTOOLSBYTEFLAGS|" \
++ -e "s|COQSRCDIRECTORY|$COQSRC|" \
++ -e "s|COQVERSION|$VERSION|" \
++ -e "s|BINDIRDIRECTORY|$BINDIR|" \
++ -e "s|COQLIBDIRECTORY|$LIBDIR|" \
++ -e "s|BUILDLDPATH=|$BUILDLDPATH|" \
++ -e "s|MANDIRDIRECTORY|$MANDIR|" \
++ -e "s|DOCDIRDIRECTORY|$DOCDIR|" \
++ -e "s|EMACSLIBDIRECTORY|$EMACSLIB|" \
++ -e "s|EMACSCOMMAND|$EMACS|" \
++ -e "s|COQDOCDIRECTORY|$COQDOCDIR|" \
++ -e "s|MKTEXLSRCOMMAND|$MKTEXLSR|" \
++ -e "s|ARCHITECTURE|$ARCH|" \
++ -e "s|OSDEPENDENTLIBS|$OSDEPLIBS|" \
++ -e "s|OSDEPENDENTP4OPTFLAGS|$OSDEPP4OPTFLAGS|" \
++ -e "s|CAMLLIBDIRECTORY|$CAMLLIB|" \
++ -e "s|CAMLTAG|$CAMLTAG|" \
++ -e "s|CAMLP4BINDIRECTORY|$CAMLP4BIN|" \
++ -e "s|CAMLP4LIBDIRECTORY|$CAMLP4LIB|" \
++ -e "s|CAMLP4TOOL|$camlp4oexec|" \
++ -e "s|CAMLP4COMPATFLAGS|$CAMLP4COMPAT|" \
++ -e "s|LABLGTKINCLUDES|$LABLGTKINCLUDES|" \
++ -e "s|COQDEBUGFLAGOPT|$coq_debug_flag_opt|" \
++ -e "s|COQDEBUGFLAG|$coq_debug_flag|" \
++ -e "s|COQPROFILEFLAG|$coq_profile_flag|" \
++ -e "s|CAMLANNOTATEFLAG|$coq_annotate_flag|" \
++ -e "s|CCOMPILEFLAGS|$cflags|" \
++ -e "s|BESTCOMPILER|$best_compiler|" \
++ -e "s|DLLEXTENSION|$DLLEXT|" \
++ -e "s|EXECUTEEXTENSION|$EXE|" \
++ -e "s|BYTECAMLC|$bytecamlc|" \
++ -e "s|OCAMLMKLIBEXEC|$ocamlmklibexec|" \
++ -e "s|NATIVECAMLC|$nativecamlc|" \
++ -e "s|OCAMLEXEC|$ocamlexec|" \
++ -e "s|OCAMLDEPEXEC|$ocamldepexec|" \
++ -e "s|OCAMLDOCEXEC|$ocamldocexec|" \
++ -e "s|OCAMLLEXEXEC|$ocamllexexec|" \
++ -e "s|OCAMLYACCEXEC|$ocamlyaccexec|" \
++ -e "s|CAMLMKTOPEXEC|$ocamlmktopexec|" \
++ -e "s|CCEXEC|$gcc_exec|" \
++ -e "s|AREXEC|$ar_exec|" \
++ -e "s|RANLIBEXEC|$ranlib_exec|" \
++ -e "s|STRIPCOMMAND|$STRIPCOMMAND|" \
++ -e "s|COQIDEOPT|$COQIDE|" \
++ -e "s|CHECKEDOUTSOURCETREE|$checkedout|" \
++ -e "s|WITHDOCOPT|$with_doc|" \
++ -e "s|HASNATIVEDYNLINK|$NATDYNLINKFLAG|" \
++ "$config_template" > "$config_file"
++
++chmod a-w "$config_file"
++
++##################################################
++# The end
++####################################################
++
++echo "If anything in the above is wrong, please restart './configure'."
++echo
++echo "*Warning* To compile the system for a new architecture"
++echo " don't forget to do a 'make archclean' before './configure'."
++
++# $Id: configure 14833 2011-12-19 21:57:30Z notin $
diff --git a/pkgs/applications/science/logic/coq/coq-8.3-make-3.82-compat.patch b/pkgs/applications/science/logic/coq/coq-8.3-make-3.82-compat.patch
deleted file mode 100644
index 5176aa33ec8..00000000000
--- a/pkgs/applications/science/logic/coq/coq-8.3-make-3.82-compat.patch
+++ /dev/null
@@ -1,84 +0,0 @@
-From: glondu
-Date: Tue, 19 Oct 2010 13:22:08 +0000 (+0000)
-Subject: Fix mixed implicit and normal rules
-X-Git-Url: https://gforge.inria.fr/plugins/scmgit/cgi-bin/gitweb.cgi?p=coq%2Fcoq-svn.git;a=commitdiff_plain;h=86eb08bad450dd3fa77b11e4a34d2f493ab80d85
-
-Fix mixed implicit and normal rules
-
-This fixes build with GNU Make 3.82. See threads:
-
- https://sympa-roc.inria.fr/wws/arc/coqdev/2010-10/msg00025.html
- http://thread.gmane.org/gmane.comp.gnu.make.bugs/4912
-
-git-svn-id: svn+ssh://scm.gforge.inria.fr/svn/coq/branches/v8.3@13566 85f007b7-540e-0410-9357-904b9bb8a0f7
----
-
-diff --git a/Makefile b/Makefile
-index b1edc01..ea73c51 100644
---- a/Makefile
-+++ b/Makefile
-@@ -160,9 +160,19 @@ else
- stage1 $(STAGE1_TARGETS) : always
- $(call stage-template,1)
-
-+ifneq (,$(STAGE1_IMPLICITS))
-+$(STAGE1_IMPLICITS) : always
-+ $(call stage-template,1)
-+endif
-+
- stage2 $(STAGE2_TARGETS) : stage1
- $(call stage-template,2)
-
-+ifneq (,$(STAGE2_IMPLICITS))
-+$(STAGE2_IMPLICITS) : stage1
-+ $(call stage-template,2)
-+endif
-+
- # Nota:
- # - world is one of the targets in $(STAGE2_TARGETS), hence launching
- # "make" or "make world" leads to recursion into stage1 then stage2
-diff --git a/Makefile.common b/Makefile.common
-index cc38980..46bf217 100644
---- a/Makefile.common
-+++ b/Makefile.common
-@@ -365,7 +365,7 @@ DATE=$(shell LANG=C date +"%B %Y")
-
- SOURCEDOCDIR=dev/source-doc
-
--CAML_OBJECT_PATTERNS:=%.cmo %.cmx %.cmi %.cma %.cmxa %.cmxs %.dep.ps %.dot
-+CAML_OBJECT_PATTERNS:=%.cmo %.cmx %.o %.cmi %.cma %.cmxa %.a %.cmxs %.dep.ps %.dot
-
- ### Targets forwarded by Makefile to a specific stage:
-
-@@ -374,10 +374,12 @@ CAML_OBJECT_PATTERNS:=%.cmo %.cmx %.cmi %.cma %.cmxa %.cmxs %.dep.ps %.dot
- STAGE1_TARGETS:= $(STAGE1) $(COQDEPBOOT) \
- $(GENFILES) \
- source-doc revision toplevel/mltop.byteml toplevel/mltop.optml \
-- $(STAGE1_ML4:.ml4=.ml4-preprocessed) %.o
-+ $(STAGE1_ML4:.ml4=.ml4-preprocessed)
-+
-+STAGE1_IMPLICITS:=
-
- ifdef CM_STAGE1
-- STAGE1_TARGETS+=$(CAML_OBJECT_PATTERNS)
-+ STAGE1_IMPLICITS+=$(CAML_OBJECT_PATTERNS)
- endif
-
- ## Enumeration of targets that require being done at stage2
-@@ -402,12 +404,13 @@ STAGE2_TARGETS:=$(COQBINARIES) lib kernel byterun library proofs tactics \
- printers debug initplugins plugins \
- world install coqide coqide-files coq coqlib \
- coqlight states check init theories theories-light \
-- $(DOC_TARGETS) $(VO_TARGETS) validate \
-- %.vo %.glob states/% install-% %.ml4-preprocessed \
-+ $(DOC_TARGETS) $(VO_TARGETS) validate
-+
-+STAGE2_IMPLICITS:= %.vo %.glob states/% install-% %.ml4-preprocessed \
- $(DOC_TARGET_PATTERNS)
-
- ifndef CM_STAGE1
-- STAGE2_TARGETS+=$(CAML_OBJECT_PATTERNS)
-+ STAGE2_IMPLICITS+=$(CAML_OBJECT_PATTERNS)
- endif
-
-
diff --git a/pkgs/applications/science/logic/coq/default.nix b/pkgs/applications/science/logic/coq/default.nix
index ce285418ad8..3fef10b44fb 100644
--- a/pkgs/applications/science/logic/coq/default.nix
+++ b/pkgs/applications/science/logic/coq/default.nix
@@ -29,8 +29,7 @@ stdenv.mkDerivation {
buildFlags = "world"; # Debug with "world VERBOSE=1";
- #patches = [ ./configure.patch ./coq-8.3-make-3.82-compat.patch ];
- patches = [ /root/configure.patch ];
+ patches = [ ./configure.patch ];
postPatch = ''
UNAME=$(type -tp uname)