Merge staging into staging-next

nixos/modules/hardware/opengl.nix

@@ -11,9 +11,9 @@ let
   videoDrivers = config.services.xserver.videoDrivers;
 
   makePackage = p: pkgs.buildEnv {
-    name = "mesa-drivers+txc-${p.mesa_drivers.version}";
+    name = "mesa-drivers+txc-${p.mesa.version}";
     paths =
-      [ p.mesa_drivers
+      [ p.mesa.drivers
         (if cfg.s3tcSupport then p.libtxc_dxtn else p.libtxc_dxtn_s2tc)
       ];
   };

pkgs/applications/graphics/fbida/default.nix

@@ -1,10 +1,10 @@
 { stdenv, fetchurl, libjpeg, libexif, libungif, libtiff, libpng, libwebp, libdrm
 , pkgconfig, freetype, fontconfig, which, imagemagick, curl, sane-backends, libXpm
-, epoxy, poppler, mesa_noglu, lirc }:
+, epoxy, poppler, mesa, lirc }:
 
 stdenv.mkDerivation rec {
   name = "fbida-2.14";
-  
+
   src = fetchurl {
     url = "http://dl.bytesex.org/releases/fbida/${name}.tar.gz";
     sha256 = "0f242mix20rgsqz1llibhsz4r2pbvx6k32rmky0zjvnbaqaw1dwm";
@@ -14,9 +14,9 @@ stdenv.mkDerivation rec {
   buildInputs = [
     libexif libjpeg libpng libungif freetype fontconfig libtiff libwebp
     imagemagick curl sane-backends libdrm libXpm epoxy poppler lirc
-    mesa_noglu
+    mesa
   ];
-  
+
   makeFlags = [ "prefix=$(out)" "verbose=yes" "STRIP=" "JPEG_VER=62" ];
 
   patchPhase = ''

pkgs/applications/misc/lutris/default.nix

@@ -54,7 +54,7 @@ let
     # Higan // TODO: "higan is not available for the x86_64 architecture"
 
     # Libretro
-    fluidsynth hidapi mesa_noglu libdrm
+    fluidsynth hidapi mesa libdrm
 
     # MAME
     qt48 fontconfig SDL2_ttf

pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix

@@ -1,6 +1,6 @@
-{fetchFromGitHub, libgit2_0_27, ...}:
+{fetchFromGitHub, libgit2, ...}:
 
-libgit2_0_27.overrideAttrs (oldAttrs: rec {
+libgit2.overrideAttrs (oldAttrs: rec {
   cmakeFlags = oldAttrs.cmakeFlags ++ [
     "-DUSE_BUNDLED_ZLIB=ON"
     "-DUSE_ICONV=OFF"

pkgs/applications/version-management/git-and-tools/grv/default.nix

@@ -1,11 +1,11 @@
-{ stdenv, buildGoPackage, fetchFromGitHub, curl, libgit2_0_27, ncurses, pkgconfig, readline }:
+{ stdenv, buildGoPackage, fetchFromGitHub, curl, libgit2, ncurses, pkgconfig, readline }:
 let
   version = "0.3.1";
 in
 buildGoPackage {
   name = "grv-${version}";
 
-  buildInputs = [ ncurses readline curl libgit2_0_27 ];
+  buildInputs = [ ncurses readline curl libgit2 ];
   nativeBuildInputs = [ pkgconfig ];
 
   goPackagePath = "github.com/rgburke/grv";

pkgs/applications/virtualization/qemu/default.nix

@@ -15,7 +15,7 @@
 , usbredirSupport ? spiceSupport, usbredir
 , xenSupport ? false, xen
 , cephSupport ? false, ceph
-, openGLSupport ? sdlSupport, mesa_noglu, epoxy, libdrm
+, openGLSupport ? sdlSupport, mesa, epoxy, libdrm
 , virglSupport ? openGLSupport, virglrenderer
 , smbdSupport ? false, samba
 , hostCpuOnly ? false
@@ -66,7 +66,7 @@ stdenv.mkDerivation rec {
     ++ optionals stdenv.isLinux [ alsaLib libaio libcap_ng libcap attr ]
     ++ optionals xenSupport [ xen ]
     ++ optionals cephSupport [ ceph ]
-    ++ optionals openGLSupport [ mesa_noglu epoxy libdrm ]
+    ++ optionals openGLSupport [ mesa epoxy libdrm ]
     ++ optionals virglSupport [ virglrenderer ]
     ++ optionals smbdSupport [ samba ];
 

pkgs/applications/window-managers/weston/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, meson, ninja, pkgconfig, wayland, libGL, mesa_noglu, libxkbcommon, cairo, libxcb
+{ stdenv, fetchurl, meson, ninja, pkgconfig, wayland, libGL, mesa, libxkbcommon, cairo, libxcb
 , libXcursor, xlibsWrapper, udev, libdrm, mtdev, libjpeg, pam, dbus, libinput, libevdev
 , colord, lcms2
 , pango ? null, libunwind ? null, freerdp ? null, vaapi ? null, libva ? null
@@ -18,7 +18,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ meson ninja pkgconfig ];
   buildInputs = [
-    wayland libGL mesa_noglu libxkbcommon cairo libxcb libXcursor xlibsWrapper udev libdrm
+    wayland libGL mesa libxkbcommon cairo libxcb libXcursor xlibsWrapper udev libdrm
     mtdev libjpeg pam dbus libinput libevdev pango libunwind freerdp vaapi libva
     libwebp wayland-protocols
     colord lcms2

pkgs/build-support/appimage/default.nix

@@ -149,7 +149,7 @@ rec {
       libidn
       tbb
       wayland
-      mesa_noglu
+      mesa
       libxkbcommon
 
       flac

pkgs/desktops/enlightenment/efl.nix

@@ -3,7 +3,7 @@
 , libsndfile, xorg, libdrm, libxkbcommon, udev, utillinux, bullet, luajit
 , python27Packages, openjpeg, doxygen, expat, harfbuzz, jbig2dec, librsvg
 , dbus, alsaLib, poppler, ghostscript, libraw, libspectre, xineLib, libwebp
-, curl, libinput, systemd, mesa_noglu, writeText, gtk3
+, curl, libinput, systemd, mesa, writeText, gtk3
 }:
 
 stdenv.mkDerivation rec {
@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ pkgconfig gtk3 ];
 
-  buildInputs = [ openssl zlib lz4 freetype fontconfig SDL libGL mesa_noglu
+  buildInputs = [ openssl zlib lz4 freetype fontconfig SDL libGL mesa
     giflib libpng libtiff glib gst_all_1.gstreamer gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good
     gst_all_1.gst-libav libpulseaudio libsndfile xorg.libXcursor xorg.xorgproto
     xorg.libX11 udev systemd ];

pkgs/desktops/enlightenment/enlightenment.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchurl, meson, ninja, pkgconfig, gettext, efl,
   xcbutilkeysyms, libXrandr, libXdmcp, libxcb, libffi, pam, alsaLib,
-  luajit, bzip2, libpthreadstubs, gdbm, libcap, mesa_noglu,
+  luajit, bzip2, libpthreadstubs, gdbm, libcap, mesa,
   xkeyboard_config, pcre
 }:
 
@@ -34,7 +34,7 @@ stdenv.mkDerivation rec {
     libpthreadstubs
     gdbm
     pcre
-    mesa_noglu
+    mesa
     xkeyboard_config
   ] ++
     stdenv.lib.optionals stdenv.isLinux [ libcap ];
@@ -46,7 +46,7 @@ stdenv.mkDerivation rec {
     # installer to try to do this, the file $out/e-wrappers.nix is created,
     # containing the needed configuration for wrapping those programs. It
     # can be used in the enlightenment module. The idea is:
-    # 
+    #
     #  1) rename the original binary adding the extension .orig
     #  2) wrap the renamed binary at /run/wrappers/bin/
     #  3) create a new symbolic link using the original binary name (in the

pkgs/desktops/enlightenment/ephoto.nix

@@ -1,9 +1,9 @@
-{ stdenv, fetchurl, pkgconfig, efl, pcre, mesa_noglu, makeWrapper }:
+{ stdenv, fetchurl, pkgconfig, efl, pcre, mesa, makeWrapper }:
 
 stdenv.mkDerivation rec {
   name = "ephoto-${version}";
   version = "1.5";
-  
+
   src = fetchurl {
     url = "http://www.smhouston.us/stuff/${name}.tar.gz";
     sha256 = "09kraa5zz45728h2dw1ssh23b87j01bkfzf977m48y1r507sy3vb";
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [
     (pkgconfig.override { vanilla = true; })
-    mesa_noglu.dev # otherwise pkg-config does not find gbm
+    mesa.dev # otherwise pkg-config does not find gbm
     makeWrapper
   ];
 

pkgs/desktops/enlightenment/rage.nix

@@ -1,9 +1,9 @@
-{ stdenv, fetchurl, meson, ninja, pkgconfig, efl, gst_all_1, pcre, mesa_noglu, wrapGAppsHook }:
+{ stdenv, fetchurl, meson, ninja, pkgconfig, efl, gst_all_1, pcre, mesa, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   name = "rage-${version}";
   version = "0.3.0";
-  
+
   src = fetchurl {
     url = "http://download.enlightenment.org/rel/apps/rage/${name}.tar.xz";
     sha256 = "0gfzdd4jg78bkmj61yg49w7bzspl5m1nh6agqgs8k7qrq9q26xqy";
@@ -13,7 +13,7 @@ stdenv.mkDerivation rec {
     meson
     ninja
     (pkgconfig.override { vanilla = true; })
-    mesa_noglu.dev
+    mesa.dev
     wrapGAppsHook
   ];
 

pkgs/desktops/enlightenment/terminology.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, meson, ninja, pkgconfig, efl, pcre, mesa_noglu, makeWrapper }:
+{ stdenv, fetchurl, meson, ninja, pkgconfig, efl, pcre, mesa, makeWrapper }:
 
 stdenv.mkDerivation rec {
   pname = "terminology";
@@ -19,7 +19,7 @@ stdenv.mkDerivation rec {
   buildInputs = [
     efl
     pcre
-    mesa_noglu
+    mesa
   ];
 
   meta = {

pkgs/development/compilers/halide/default.nix

@@ -1,5 +1,5 @@
 { llvmPackages, lib, fetchFromGitHub, cmake
-, libpng, libjpeg, mesa_noglu, eigen, openblas
+, libpng, libjpeg, mesa, eigen, openblas
 }:
 
 let
@@ -37,7 +37,7 @@ in llvmPackages.stdenv.mkDerivation {
   # Note: only openblas and not atlas part of this Nix expression
   # see pkgs/development/libraries/science/math/liblapack/3.5.0.nix
   # to get a hint howto setup atlas instead of openblas
-  buildInputs = [ llvmPackages.llvm libpng libjpeg mesa_noglu eigen openblas ];
+  buildInputs = [ llvmPackages.llvm libpng libjpeg mesa eigen openblas ];
 
   nativeBuildInputs = [ cmake ];
 

pkgs/development/interpreters/guile/default.nix

@@ -12,11 +12,11 @@
 
 (rec {
   name = "guile-${version}";
-  version = "2.2.3";
+  version = "2.2.4";
 
   src = fetchurl {
     url = "mirror://gnu/guile/${name}.tar.xz";
-    sha256 = "11j01agvnci2cx32wwpqs9078856yxmvs15gcsz7ganpkj2ahlw3";
+    sha256 = "07p3g0v2ba2vlfbfidqzlgbhnzdx46wh2rgc5gszq1mjyx5bks6r";
   };
 
   outputs = [ "out" "dev" "info" ];
@@ -42,7 +42,6 @@
 
   patches = [
     ./eai_system.patch
-    ./riscv.patch
   ] ++ stdenv.lib.optional (coverageAnalysis != null) ./gcov-file-name.patch
     ++ stdenv.lib.optional stdenv.isDarwin (fetchpatch {
       url = "https://gitlab.gnome.org/GNOME/gtk-osx/raw/52898977f165777ad9ef169f7d4818f2d4c9b731/patches/guile-clocktime.patch";

pkgs/development/libraries/SDL/default.nix

@@ -1,4 +1,5 @@
-{ stdenv, config, libGLSupported, fetchurl, fetchpatch, pkgconfig, audiofile, libcap, libiconv
+{ stdenv, config, fetchurl, fetchpatch, pkgconfig, audiofile, libcap, libiconv
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
 , openglSupport ? libGLSupported, libGL, libGLU
 , alsaSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid, alsaLib
 , x11Support ? !stdenv.isCygwin && !stdenv.hostPlatform.isAndroid

pkgs/development/libraries/SDL2/default.nix

@@ -1,4 +1,5 @@
-{ stdenv, config, libGLSupported, fetchurl, pkgconfig
+{ stdenv, config, fetchurl, pkgconfig
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
 , openglSupport ? libGLSupported, libGL
 , alsaSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid, alsaLib
 , x11Support ? !stdenv.isCygwin && !stdenv.hostPlatform.isAndroid

pkgs/development/libraries/boehm-gc/default.nix

@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchurl, pkgconfig, libatomic_ops
+{ lib, stdenv, fetchurl
 , enableLargeConfig ? false # doc: https://github.com/ivmai/bdwgc/blob/v7.6.6/doc/README.macros#L179
 }:
 
@@ -14,9 +14,6 @@ stdenv.mkDerivation rec {
     sha256 = "1798rp3mcfkgs38ynkbg2p47bq59pisrc6mn0l20pb5iczf0ssj3";
   };
 
-  buildInputs = [ libatomic_ops ];
-  nativeBuildInputs = [ pkgconfig ];
-
   outputs = [ "out" "dev" "doc" ];
   separateDebugInfo = stdenv.isLinux;
 
@@ -29,20 +26,12 @@ stdenv.mkDerivation rec {
     lib.optional stdenv.hostPlatform.isRiscV ./riscv.patch;
 
   configureFlags =
-    [ "--enable-cplusplus" ]
+    [ "--enable-cplusplus" "--with-libatomic-ops=none" ]
     ++ lib.optional enableLargeConfig "--enable-large-config"
-    ++ lib.optional (stdenv.hostPlatform.libc == "musl") "--disable-static"
+    ++ lib.optional (stdenv.hostPlatform.libc == "musl") "--disable-static";
-    # Configure script can't detect whether C11 atomic intrinsics are available
-    # when cross-compiling, so it links to libatomic_ops, which has to be
-    # propagated to all dependencies. To avoid this, assume that the intrinsics
-    # are available.
-    ++ lib.optional (stdenv.hostPlatform != stdenv.buildPlatform) "--with-libatomic-ops=none";
 
   doCheck = true; # not cross;
 
-  # Don't run the native `strip' when cross-compiling.
-  dontStrip = stdenv.hostPlatform != stdenv.buildPlatform;
-
   enableParallelBuilding = true;
 
   meta = {

pkgs/development/libraries/cairo/default.nix

@@ -3,7 +3,7 @@
 , x11Support? !stdenv.isDarwin, libXext, libXrender
 , gobjectSupport ? true, glib
 , xcbSupport ? x11Support, libxcb, xcbutil # no longer experimental since 1.12
-, libGLSupported
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
 , glSupport ? config.cairo.gl or (libGLSupported && stdenv.isLinux && !stdenv.isAarch32 && !stdenv.isMips)
 , libGL ? null # libGLU_combined is no longer a big dependency
 , pdfSupport ? true

pkgs/development/libraries/cogl/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchurl, fetchpatch, pkgconfig, libGL, glib, gdk_pixbuf, xorg, libintl
 , pangoSupport ? true, pango, cairo, gobject-introspection, wayland, gnome3
-, mesa_noglu
+, mesa
 , gstreamerSupport ? true, gst_all_1 }:
 
 let
@@ -44,7 +44,7 @@ in stdenv.mkDerivation rec {
     ++ stdenv.lib.optionals (!stdenv.isDarwin) [ "--enable-gles1" "--enable-gles2" ];
 
   propagatedBuildInputs = with xorg; [
-      glib gdk_pixbuf gobject-introspection wayland mesa_noglu
+      glib gdk_pixbuf gobject-introspection wayland mesa
       libGL libXrandr libXfixes libXcomposite libXdamage
     ]
     ++ stdenv.lib.optionals gstreamerSupport [ gst_all_1.gstreamer

pkgs/development/libraries/dbus/default.nix

@@ -6,8 +6,8 @@ assert x11Support -> libX11 != null
                   && libSM != null;
 
 let
-  version = "1.12.14";
+  version = "1.12.16";
-  sha256 = "13aca7gzgl7z1dfdipfs23773w8n6z01d4rj5kmssv4gms8c5ya4";
+  sha256 = "107ckxaff1cv4q6kmfdi2fb1nlsv03312a7kf6lb4biglhpjv8jl";
 
 self = stdenv.mkDerivation {
     name = "dbus-${version}";

pkgs/development/libraries/git2/0.27.nix

@@ -1,36 +0,0 @@
-{ stdenv, fetchFromGitHub, cmake, pkgconfig, python
-, zlib, libssh2, openssl, http-parser, curl
-, libiconv, Security
-}:
-
-stdenv.mkDerivation rec {
-  version = "0.27.8";
-  name = "libgit2-${version}";
-
-  src = fetchFromGitHub {
-    owner = "libgit2";
-    repo = "libgit2";
-    rev = "v${version}";
-    sha256 = "0wzx8nkyy9m7mx6cks58chjd4289vjsw97mxm9w6f1ggqsfnmbr9";
-  };
-
-  cmakeFlags = [ "-DTHREADSAFE=ON" ];
-
-  nativeBuildInputs = [ cmake python pkgconfig ];
-
-  buildInputs = [ zlib libssh2 openssl http-parser curl ]
-    ++ stdenv.lib.optional stdenv.isDarwin Security;
-
-  propagatedBuildInputs = stdenv.lib.optional (!stdenv.isLinux) libiconv;
-
-  enableParallelBuilding = true;
-
-  doCheck = false; # hangs. or very expensive?
-
-  meta = {
-    description = "The Git linkable library";
-    homepage = https://libgit2.github.com/;
-    license = stdenv.lib.licenses.gpl2;
-    platforms = with stdenv.lib.platforms; all;
-  };
-}

pkgs/development/libraries/git2/default.nix

@@ -1,18 +1,18 @@
-{ stdenv, fetchFromGitHub, pkgconfig, cmake
+{ stdenv, fetchFromGitHub, cmake, pkgconfig, python
-, zlib, python, libssh2, openssl, curl, http-parser
+, zlib, libssh2, openssl, http-parser, curl
 , libiconv, Security
 }:
 
-stdenv.mkDerivation (rec {
+stdenv.mkDerivation rec {
-  name = "libgit2-${version}";
+  pname = "libgit2";
-  version = "0.26.6";
+  version = "0.27.8";
   # keep the version in sync with pythonPackages.pygit2 and libgit2-glib
 
   src = fetchFromGitHub {
     owner = "libgit2";
     repo = "libgit2";
     rev = "v${version}";
-    sha256 = "17pjvprmdrx4h6bb1hhc98w9qi6ki7yl57f090n9kbhswxqfs7s3";
+    sha256 = "0wzx8nkyy9m7mx6cks58chjd4289vjsw97mxm9w6f1ggqsfnmbr9";
   };
 
   cmakeFlags = [ "-DTHREADSAFE=ON" ];
@@ -22,17 +22,16 @@ stdenv.mkDerivation (rec {
   buildInputs = [ zlib libssh2 openssl http-parser curl ]
     ++ stdenv.lib.optional stdenv.isDarwin Security;
 
-  propagatedBuildInputs = stdenv.lib.optional (!stdenv.isLinux) [ libiconv ];
+  propagatedBuildInputs = stdenv.lib.optional (!stdenv.isLinux) libiconv;
 
   enableParallelBuilding = true;
 
   doCheck = false; # hangs. or very expensive?
 
-  meta = with stdenv.lib; {
+  meta = {
     description = "The Git linkable library";
     homepage = https://libgit2.github.com/;
-    license = licenses.gpl2;
+    license = stdenv.lib.licenses.gpl2;
-    platforms = with platforms; all;
+    platforms = with stdenv.lib.platforms; all;
   };
-} // stdenv.lib.optionalAttrs (!stdenv.isLinux) {
+}
-})

pkgs/development/libraries/gtk+/3.x.nix

@@ -2,7 +2,7 @@
 , expat, glib, cairo, pango, gdk_pixbuf, atk, at-spi2-atk, gobject-introspection, fribidi
 , xorg, epoxy, json-glib, libxkbcommon, gmp, gnome3, autoreconfHook, gsettings-desktop-schemas
 , x11Support ? stdenv.isLinux
-, waylandSupport ? stdenv.isLinux, mesa_noglu, wayland, wayland-protocols
+, waylandSupport ? stdenv.isLinux, mesa, wayland, wayland-protocols
 , xineramaSupport ? stdenv.isLinux
 , cupsSupport ? stdenv.isLinux, cups ? null
 , AppKit, Cocoa
@@ -48,7 +48,7 @@ stdenv.mkDerivation rec {
     [ expat glib cairo pango gdk_pixbuf atk at-spi2-atk gsettings-desktop-schemas fribidi
       libXrandr libXrender libXcomposite libXi libXcursor libSM libICE ]
     ++ optional stdenv.isDarwin Cocoa  # explicitly propagated, always needed
-    ++ optionals waylandSupport [ mesa_noglu wayland wayland-protocols ]
+    ++ optionals waylandSupport [ mesa wayland wayland-protocols ]
     ++ optional xineramaSupport libXinerama
     ++ optional cupsSupport cups;
   #TODO: colord?

pkgs/development/libraries/libmicrohttpd/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "libmicrohttpd-${version}";
-  version = "0.9.63";
+  version = "0.9.64";
 
   src = fetchurl {
     url = "mirror://gnu/libmicrohttpd/${name}.tar.gz";
-    sha256 = "173lj66crwvhzwp1r812sc5h1hda7g6lb9l1y5zf7w3pw4dnzhrp";
+    sha256 = "03imzkd1hl2mkkpi84vg5xq9x6b58gwsv86ym85km0lhb7nxi4p7";
   };
 
   outputs = [ "out" "dev" "devdoc" "info" ];

pkgs/development/libraries/libva/1.0.0.nix

@@ -1,5 +1,5 @@
 { stdenv, lib, fetchurl, libX11, pkgconfig, libXext, libdrm, libXfixes, wayland, libffi
-, libGL, libGL_driver
+, libGL, mesa
 , minimal ? false, libva1-minimal
 }:
 
@@ -22,7 +22,7 @@ stdenv.mkDerivation rec {
 
   configureFlags =
     # Add FHS paths for non-NixOS applications.
-    [ "--with-drivers-path=${libGL_driver.driverLink}/lib/dri:/usr/lib/dri:/usr/lib32/dri" ] ++
+    [ "--with-drivers-path=${mesa.drivers.driverLink}/lib/dri:/usr/lib/dri:/usr/lib32/dri" ] ++
     lib.optionals (!minimal) [ "--enable-glx" ];
 
   installFlags = [ "dummy_drv_video_ladir=$(out)/lib/dri" ];

pkgs/development/libraries/libva/default.nix

@@ -1,6 +1,6 @@
 { stdenv, lib, fetchFromGitHub, autoreconfHook, pkgconfig
 , libXext, libdrm, libXfixes, wayland, libffi, libX11
-, libGL, libGL_driver
+, libGL, mesa
 , minimal ? false, libva-minimal
 }:
 
@@ -28,7 +28,7 @@ stdenv.mkDerivation rec {
 
   configureFlags = [
     # Add FHS paths for non-NixOS applications.
-    "--with-drivers-path=${libGL_driver.driverLink}/lib/dri:/usr/lib/dri:/usr/lib32/dri"
+    "--with-drivers-path=${mesa.drivers.driverLink}/lib/dri:/usr/lib/dri:/usr/lib32/dri"
   ] ++ lib.optionals (!minimal) [ "--enable-glx" ];
 
   installFlags = [

pkgs/development/libraries/libvdpau/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, pkgconfig, xorg, libGL_driver }:
+{ stdenv, fetchurl, pkgconfig, xorg, mesa }:
 
 stdenv.mkDerivation rec {
   name = "libvdpau-${version}";
@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
   propagatedBuildInputs = [ xorg.libX11 ];
 
   configureFlags = stdenv.lib.optional stdenv.isLinux
-    "--with-module-dir=${libGL_driver.driverLink}/lib/vdpau";
+    "--with-module-dir=${mesa.drivers.driverLink}/lib/vdpau";
 
   NIX_LDFLAGS = if stdenv.isDarwin then "-lX11" else null;
 

pkgs/development/libraries/mesa/default.nix

@@ -69,7 +69,7 @@ let
 in
 
 let self = stdenv.mkDerivation {
-  name = "mesa-noglu-${version}";
+  name = "mesa-${version}";
 
   src =  fetchurl {
     urls = [

pkgs/development/libraries/nghttp2/default.nix

@@ -18,11 +18,11 @@ let inherit (stdenv.lib) optional; in
 
 stdenv.mkDerivation rec {
   pname = "nghttp2";
-  version = "1.38.0";
+  version = "1.39.1";
 
   src = fetchurl {
     url = "https://github.com/${pname}/${pname}/releases/download/v${version}/${pname}-${version}.tar.bz2";
-    sha256 = "156r3myrglkmrdv4zh151g9zcr7b92zjn15wx5i9ypw0naanjc4g";
+    sha256 = "1vzmkh3pky3l3w6iaffhikh7hslp8zp0jsdqpd6knbflsmzp511a";
   };
 
   outputs = [ "bin" "out" "dev" "lib" ];

pkgs/development/libraries/qt-3/default.nix

@@ -6,8 +6,9 @@
 , cursorSupport ? true, libXcursor ? null
 , threadSupport ? true
 , mysqlSupport ? false, mysql ? null
-, libGLSupported
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
-, openglSupport ? libGLSupported, libGLU_combined ? null, libXmu ? null
+, openglSupport ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
+, libGLU_combined ? null, libXmu ? null
 , xlibsWrapper, xorgproto, zlib, libjpeg, libpng, which
 }:
 

pkgs/development/libraries/qt-4.x/4.8/default.nix

@@ -1,10 +1,11 @@
 { stdenv, lib, fetchurl, fetchpatch, substituteAll
 , libXrender, libXinerama, libXcursor, libXv, libXext
 , libXfixes, libXrandr, libSM, freetype, fontconfig, zlib, libjpeg, libpng
-, libmng, which, libGLSupported, libGLU, openssl, dbus, cups, pkgconfig
+, libmng, which, libGLU, openssl, dbus, cups, pkgconfig
 , libtiff, glib, icu, mysql, postgresql, sqlite, perl, coreutils, libXi
 , buildMultimedia ? stdenv.isLinux, alsaLib, gstreamer, gst-plugins-base
 , buildWebkit ? (stdenv.isLinux || stdenv.isDarwin)
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
 , flashplayerFix ? false, gdk_pixbuf
 , gtkStyle ? stdenv.hostPlatform == stdenv.buildPlatform, gtk2
 , gnomeStyle ? false, libgnomeui, GConf, gnome_vfs

pkgs/development/libraries/soil/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, unzip, mesa_noglu, libX11 }:
+{ stdenv, fetchurl, unzip, mesa, libX11 }:
 
 stdenv.mkDerivation rec {
   name = "soil";
@@ -8,8 +8,8 @@ stdenv.mkDerivation rec {
     sha256 = "00gpwp9dldzhsdhksjvmbhsd2ialraqbv6v6dpikdmpncj6mnc52";
   };
 
-  buildInputs = [ unzip mesa_noglu libX11 ];
+  buildInputs = [ unzip mesa libX11 ];
-  
+
   sourceRoot = "Simple OpenGL Image Library/projects/makefile";
   preBuild   = "mkdir obj";
   preInstall = "mkdir -p $out/lib $out/include";

pkgs/development/libraries/virglrenderer/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, pkgconfig, libGLU, epoxy, libX11, libdrm, mesa_noglu }:
+{ stdenv, fetchurl, pkgconfig, libGLU, epoxy, libX11, libdrm, mesa }:
 
 
 stdenv.mkDerivation rec {
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     sha256 = "041agg1d6i8hg250y30f08n3via0hs9rbijxdrfifb8ara805v0m";
   };
 
-  buildInputs = [ libGLU epoxy libX11 libdrm mesa_noglu ];
+  buildInputs = [ libGLU epoxy libX11 libdrm mesa ];
 
   nativeBuildInputs = [ pkgconfig ];
 

pkgs/development/libraries/wlc/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, cmake, pkgconfig
 , wayland, pixman, libxkbcommon, libinput, xcbutilwm, xcbutilimage, libGL
-, libX11, dbus, wayland-protocols, libdrm, mesa_noglu
+, libX11, dbus, wayland-protocols, libdrm, mesa
 , libpthreadstubs, libXdmcp, libXext, libXfixes
 , withOptionalPackages ? true, zlib, valgrind, doxygen
 }:
@@ -22,7 +22,7 @@ stdenv.mkDerivation rec {
   buildInputs = [
     wayland pixman libxkbcommon libinput xcbutilwm xcbutilimage libGL
     libX11 libXfixes dbus wayland-protocols
-    libpthreadstubs libXdmcp libXext libdrm mesa_noglu ]
+    libpthreadstubs libXdmcp libXext libdrm mesa ]
     ++ stdenv.lib.optionals withOptionalPackages [ zlib valgrind doxygen ];
 
   doCheck = true;

pkgs/development/libraries/wlroots/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, meson, ninja, pkgconfig
 , wayland, libGL, wayland-protocols, libinput, libxkbcommon, pixman
-, xcbutilwm, libX11, libcap, xcbutilimage, xcbutilerrors, mesa_noglu
+, xcbutilwm, libX11, libcap, xcbutilimage, xcbutilerrors, mesa
 , libpng, ffmpeg_4
 }:
 
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
 
   buildInputs = [
     wayland libGL wayland-protocols libinput libxkbcommon pixman
-    xcbutilwm libX11 libcap xcbutilimage xcbutilerrors mesa_noglu
+    xcbutilwm libX11 libcap xcbutilimage xcbutilerrors mesa
     libpng ffmpeg_4
   ];
 

pkgs/development/libraries/wxwidgets/2.8/default.nix

@@ -1,7 +1,8 @@
 { stdenv, fetchurl, pkgconfig, gtk2, libXinerama, libSM, libXxf86vm, xorgproto
 , gstreamer, gst-plugins-base, GConf, libX11, cairo
-, libGLSupported
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
-, withMesa ? libGLSupported, libGLU ? null, libGL ? null
+, withMesa ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
+, libGLU ? null, libGL ? null
 , compat24 ? false, compat26 ? true, unicode ? true,
 }:
 

pkgs/development/libraries/wxwidgets/2.9/default.nix

@@ -1,7 +1,8 @@
 { stdenv, fetchurl, pkgconfig, gtk2, libXinerama, libSM, libXxf86vm, xorgproto
 , gstreamer, gst-plugins-base, GConf, setfile
-, libGLSupported
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
-, withMesa ? libGLSupported, libGLU ? null, libGL ? null
+, withMesa ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
+, libGLU ? null, libGL ? null
 , compat24 ? false, compat26 ? true, unicode ? true
 , Carbon ? null, Cocoa ? null, Kernel ? null, QuickTime ? null, AGL ? null
 }:

pkgs/development/libraries/wxwidgets/3.0/default.nix

@@ -1,8 +1,9 @@
 { stdenv, fetchFromGitHub, fetchurl, pkgconfig
 , gtk2, gtk3, libXinerama, libSM, libXxf86vm
 , xorgproto, gstreamer, gst-plugins-base, GConf, setfile
-, libGLSupported
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
-, withMesa ? libGLSupported, libGLU ? null, libGL ? null
+, withMesa ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
+, libGLU ? null, libGL ? null
 , compat24 ? false, compat26 ? true, unicode ? true
 , withGtk2 ? true
 , withWebKit ? false, webkitgtk24x-gtk2 ? null, webkitgtk ? null

pkgs/development/python-modules/Mako/default.nix

@@ -4,20 +4,20 @@
 , markupsafe
 , nose
 , mock
-, pytest_3
+, pytest
 , isPyPy
 }:
 
 buildPythonPackage rec {
   pname = "Mako";
-  version = "1.0.10";
+  version = "1.0.12";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7165919e78e1feb68b4dbe829871ea9941398178fa58e6beedb9ba14acf63965";
+    sha256 = "0cfa65de3a835e87eeca6ac856b3013aade55f49e32515f65d999f91a2324162";
   };
 
-  checkInputs = [ markupsafe nose mock pytest_3 ];
+  checkInputs = [ markupsafe nose mock pytest ];
   propagatedBuildInputs = [ markupsafe ];
 
   doCheck = !isPyPy;  # https://bitbucket.org/zzzeek/mako/issue/238/2-tests-failed-on-pypy-24-25

pkgs/development/python-modules/antlr4-python2-runtime/default.nix

@@ -0,0 +1,18 @@
+{ stdenv, fetchPypi, buildPythonPackage, isPy3k }:
+
+buildPythonPackage rec {
+  pname = "antlr4-python2-runtime";
+  version = "4.7.2";
+  disabled = isPy3k;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "04ljic5wnqpizln8q3c78pqrckz6q5nb433if00j1mlyv2yja22q";
+  };
+
+  meta = {
+    description = "Runtime for ANTLR";
+    homepage = "https://www.antlr.org/";
+    license = stdenv.lib.licenses.bsd3;
+  };
+}

pkgs/development/python-modules/apipkg/default.nix

@@ -1,5 +1,5 @@
 { stdenv, buildPythonPackage, fetchPypi
-, pytest_3, setuptools_scm }:
+, pytest, setuptools_scm }:
 
 buildPythonPackage rec {
   pname = "apipkg";
@@ -11,7 +11,13 @@ buildPythonPackage rec {
   };
 
   nativeBuildInputs = [ setuptools_scm ];
-  checkInputs = [ pytest_3 ];
+  checkInputs = [ pytest ];
+
+  # Fix pytest 4 support. See: https://github.com/pytest-dev/apipkg/issues/14
+  postPatch = ''
+    substituteInPlace "test_apipkg.py" \
+      --replace "py.test.ensuretemp('test_apipkg')" "py.path.local('test_apipkg')"
+  '';
 
   checkPhase = ''
     py.test
@@ -19,7 +25,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Namespace control and lazy-import mechanism";
-    homepage = https://bitbucket.org/hpk42/apipkg;
+    homepage = "https://github.com/pytest-dev/apipkg";
     license = licenses.mit;
   };
 }

pkgs/development/python-modules/azure-cli-core/default.nix

@@ -0,0 +1,93 @@
+{ stdenv
+, lib
+, python
+, buildPythonPackage
+, fetchPypi
+, adal
+, antlr4-python3-runtime
+, argcomplete
+, azure-cli-telemetry
+, colorama
+, jmespath
+, humanfriendly
+, knack
+, msrest
+, msrestazure
+, paramiko
+, pygments
+, pyjwt
+, pyopenssl
+, pyyaml
+, requests
+, six
+, tabulate
+, azure-mgmt-resource
+, pyperclip
+, psutil
+, enum34
+, futures
+, antlr4-python2-runtime
+, ndg-httpsclient
+, isPy3k
+}:
+
+buildPythonPackage rec {
+  pname = "azure-cli-core";
+  version = "2.0.66";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0fp6b2x1l9bg07pca7asm80rnjlc4kkm061s3nrb55yj6awsnim5";
+  };
+
+  propagatedBuildInputs = [
+    adal
+    argcomplete
+    azure-cli-telemetry
+    colorama
+    jmespath
+    humanfriendly
+    knack
+    msrest
+    msrestazure
+    paramiko
+    pygments
+    pyjwt
+    pyopenssl
+    pyyaml
+    requests
+    six
+    tabulate
+    azure-mgmt-resource
+    pyperclip
+    psutil
+  ]
+  ++ lib.optionals isPy3k [ antlr4-python3-runtime ]
+  ++ lib.optionals (!isPy3k) [ enum34 futures antlr4-python2-runtime ndg-httpsclient ];
+
+  # Remove overly restrictive version contraints and obsolete namespace setup
+  prePatch = ''
+    substituteInPlace setup.py \
+      --replace "wheel==0.30.0" "wheel" \
+      --replace "azure-mgmt-resource==2.1.0" "azure-mgmt-resource"
+    substituteInPlace setup.cfg \
+      --replace "azure-namespace-package = azure-cli-nspkg" ""
+  '';
+
+  # Prevent these __init__'s from violating PEP420, only needed for python2
+  postInstall = lib.optionalString isPy3k ''
+    rm $out/${python.sitePackages}/azure/__init__.py \
+       $out/${python.sitePackages}/azure/cli/__init__.py
+  '';
+
+  # Tests are not included in sdist package
+  doCheck = false;
+
+  meta = with lib; {
+    homepage = https://github.com/Azure/azure-cli;
+    description = "Next generation multi-platform command line experience for Azure";
+    platforms = platforms.all;
+    license = licenses.mit;
+    maintainers = with maintainers; [ jonringer ];
+  };
+}

pkgs/development/python-modules/azure-cli-telemetry/default.nix

@@ -0,0 +1,50 @@
+{ stdenv
+, lib
+, buildPythonPackage
+, fetchPypi
+, isPy3k
+, python
+, applicationinsights
+, portalocker
+}:
+
+buildPythonPackage rec {
+  pname = "azure-cli-telemetry";
+  version = "1.0.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "14wmxdsrrlnixaj52q37rrvp9wg5b54gf5wn2z1vq68kxpg1s560";
+  };
+
+  propagatedBuildInputs = [
+    applicationinsights
+    portalocker
+  ];
+
+  # tests are not published to pypi
+  doCheck = false;
+
+  # Remove overly restrictive version contraints and obsolete namespace setup
+  prePatch = ''
+    substituteInPlace setup.py \
+      --replace "applicationinsights>=0.11.1,<0.11.8" "applicationinsights" \
+      --replace "portalocker==1.2.1" "portalocker"
+    substituteInPlace setup.cfg \
+      --replace "azure-namespace-package = azure-cli-nspkg" ""
+  '';
+
+  # Prevent these __init__'s from violating PEP420, only needed for python2
+  postInstall = lib.optionalString isPy3k ''
+    rm $out/${python.sitePackages}/azure/__init__.py \
+       $out/${python.sitePackages}/azure/cli/__init__.py
+  '';
+
+  meta = with lib; {
+    homepage = https://github.com/Azure/azure-cli;
+    description = "Next generation multi-platform command line experience for Azure";
+    platforms = platforms.all;
+    license = licenses.mit;
+    maintainers = with maintainers; [ jonringer ];
+  };
+}

pkgs/development/python-modules/chardet/default.nix

@@ -1,5 +1,5 @@
-{ stdenv, buildPythonPackage, fetchPypi
+{ stdenv, buildPythonPackage, fetchPypi, fetchpatch
-, pytest_3, pytestrunner, hypothesis }:
+, pytest, pytestrunner, hypothesis }:
 
 buildPythonPackage rec {
   pname = "chardet";
@@ -10,7 +10,15 @@ buildPythonPackage rec {
     sha256 = "1bpalpia6r5x1kknbk11p1fzph56fmmnp405ds8icksd3knr5aw4";
   };
 
-  checkInputs = [ pytest_3 pytestrunner hypothesis ];
+  patches = [
+    # Add pytest 4 support. See: https://github.com/chardet/chardet/pull/174
+    (fetchpatch {
+      url = "https://github.com/chardet/chardet/commit/0561ddcedcd12ea1f98b7ddedb93686ed8a5ffa4.patch";
+      sha256 = "1y1xhjf32rdhq9sfz58pghwv794f3w2f2qcn8p6hp4pc8jsdrn2q";
+    })
+  ];
+
+  checkInputs = [ pytest pytestrunner hypothesis ];
 
   meta = with stdenv.lib; {
     homepage = https://github.com/chardet/chardet;

pkgs/development/python-modules/execnet/default.nix

@@ -3,21 +3,21 @@
 , buildPythonPackage
 , isPyPy
 , fetchPypi
-, pytest_3
+, pytest
 , setuptools_scm
 , apipkg
 }:
 
 buildPythonPackage rec {
   pname = "execnet";
-  version = "1.5.0";
+  version = "1.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a7a84d5fa07a089186a329528f127c9d73b9de57f1a1131b82bb5320ee651f6a";
+    sha256 = "752a3786f17416d491f833a29217dda3ea4a471fc5269c492eebcee8cc4772d3";
   };
 
-  checkInputs = [ pytest_3 ];
+  checkInputs = [ pytest ];
   nativeBuildInputs = [ setuptools_scm ];
   propagatedBuildInputs = [ apipkg ];
 
@@ -34,15 +34,12 @@ buildPythonPackage rec {
     py.test testing
   '';
 
-  # not yet compatible with pytest 4
-  doCheck = false;
-
   __darwinAllowLocalNetworking = true;
 
   meta = with stdenv.lib; {
     description = "Rapid multi-Python deployment";
     license = licenses.gpl2;
-    homepage = "http://codespeak.net/execnet";
+    homepage = "https://execnet.readthedocs.io/";
     maintainers = with maintainers; [ nand0p ];
   };
 

pkgs/development/python-modules/importlib-metadata/default.nix

@@ -13,12 +13,12 @@
 
 buildPythonPackage rec {
   pname = "importlib-metadata";
-  version = "0.8";
+  version = "0.18";
 
   src = fetchPypi {
     pname = "importlib_metadata";
     inherit version;
-    sha256 = "b50191ead8c70adfa12495fba19ce6d75f2e0275c14c5a7beb653d6799b512bd";
+    sha256 = "cb6ee23b46173539939964df59d3d72c3e0c1b5d54b84f1d8a7e912fe43612db";
   };
 
   nativeBuildInputs = [ setuptools_scm ];
@@ -28,6 +28,9 @@ buildPythonPackage rec {
 
   checkInputs = [ importlib-resources packaging ];
 
+  # Two failing tests: https://gitlab.com/python-devs/importlib_metadata/issues/72
+  doCheck = false;
+
   meta = with lib; {
     description = "Read metadata from Python packages";
     homepage = https://importlib-metadata.readthedocs.io/;

pkgs/development/python-modules/knack/default.nix

@@ -0,0 +1,55 @@
+{ stdenv
+, lib
+, buildPythonPackage
+, fetchPypi
+, argcomplete
+, colorama
+, jmespath
+, knack
+, pygments
+, pyyaml
+, six
+, tabulate
+, mock
+, vcrpy
+, pytest
+}:
+
+buildPythonPackage rec {
+  pname = "knack";
+  version = "0.6.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1kxxj9m2mvva9rz11m6pgdg0mi712d28faj4633rl23qa53sh7i8";
+  };
+
+  propagatedBuildInputs = [
+    argcomplete
+    colorama
+    jmespath
+    pygments
+    pyyaml
+    six
+    tabulate
+  ];
+
+  checkInputs = [
+    mock
+    vcrpy
+    pytest
+  ];
+
+  # tries to make a '/homeless-shelter' dir
+  checkPhase = ''
+    pytest -k 'not test_cli_exapp1'
+  '';
+
+  meta = with lib; {
+    homepage = https://github.com/microsoft/knack;
+    description = "A Command-Line Interface framework";
+    platforms = platforms.all;
+    license = licenses.mit;
+    maintainers = with maintainers; [ jonringer ];
+  };
+}

pkgs/development/python-modules/packaging/default.nix

@@ -18,6 +18,9 @@ buildPythonPackage rec {
     py.test tests
   '';
 
+  # Prevent circular dependency
+  doCheck = false;
+
   meta = with stdenv.lib; {
     description = "Core utilities for Python packages";
     homepage = https://github.com/pypa/packaging;

pkgs/development/python-modules/pluggy/default.nix

@@ -2,15 +2,16 @@
 , lib
 , fetchPypi
 , setuptools_scm
+, importlib-metadata
 }:
 
 buildPythonPackage rec {
   pname = "pluggy";
-  version = "0.8.1";
+  version = "0.12.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8ddc32f03971bfdf900a81961a48ccf2fb677cf7715108f85295c67405798616";
+    sha256 = "0825a152ac059776623854c1543d65a4ad408eb3d33ee114dff91e57ec6ae6fc";
   };
 
   checkPhase = ''
@@ -20,11 +21,13 @@ buildPythonPackage rec {
   # To prevent infinite recursion with pytest
   doCheck = false;
 
-  buildInputs = [ setuptools_scm ];
+  nativeBuildInputs = [ setuptools_scm ];
+
+  propagatedBuildInputs = [ importlib-metadata ];
 
   meta = {
     description = "Plugin and hook calling mechanisms for Python";
-    homepage = "https://pypi.python.org/pypi/pluggy";
+    homepage = "https://github.com/pytest-dev/pluggy";
     license = lib.licenses.mit;
     maintainers = with lib.maintainers; [ ];
   };

pkgs/development/python-modules/psutil/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "psutil";
-  version = "5.5.1";
+  version = "5.6.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "045qaqvn6k90bj5bcy259yrwcd2afgznaav3sfhphy9b8ambzkkj";
+    sha256 = "863a85c1c0a5103a12c05a35e59d336e1d665747e531256e061213e2e90f63f3";
   };
 
   # No tests in archive

pkgs/development/python-modules/pygit2/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, lib, buildPythonPackage, fetchPypi, fetchpatch, isPyPy, libgit2_0_27, six, cffi }:
+{ stdenv, lib, buildPythonPackage, fetchPypi, fetchpatch, isPyPy, libgit2, six, cffi }:
 
 buildPythonPackage rec {
   pname = "pygit2";
@@ -10,7 +10,7 @@ buildPythonPackage rec {
   };
 
   preConfigure = lib.optionalString stdenv.isDarwin ''
-    export DYLD_LIBRARY_PATH="${libgit2_0_27}/lib"
+    export DYLD_LIBRARY_PATH="${libgit2}/lib"
   '';
 
   patches = [ (fetchpatch {
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     sha256 = "18x1fpmywhjjr4lvakwmy34zpxfqi8pqqj48g1wcib39lh3s7l4f";
   }) ];
 
-  propagatedBuildInputs = [ libgit2_0_27 six ] ++ lib.optional (!isPyPy) cffi;
+  propagatedBuildInputs = [ libgit2 six ] ++ lib.optional (!isPyPy) cffi;
 
   preCheck = ''
     # disable tests that require networking

pkgs/development/python-modules/pytest-fixture-config/default.nix

@@ -1,18 +1,18 @@
 { stdenv, buildPythonPackage, fetchPypi
-, setuptools-git, pytest_3 }:
+, setuptools-git, pytest }:
 
 buildPythonPackage rec {
   pname = "pytest-fixture-config";
-  version = "1.4.0";
+  version = "1.7.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "839d70343c87d6dda5bca88e3ab06e7b2027998dc1ec452c14d50be5725180a3";
+    sha256 = "13i1qpz22w3x4dmw8vih5jdnbqfqvl7jiqs0dg764s0zf8bp98a1";
   };
 
   nativeBuildInputs = [ setuptools-git ];
 
-  buildInputs = [ pytest_3 ];
+  buildInputs = [ pytest ];
 
   doCheck = false;
 

pkgs/development/python-modules/pytest-server-fixtures/default.nix

@@ -1,17 +1,17 @@
 { stdenv, buildPythonPackage, fetchPypi
-, pytest_3, pytest-shutil, pytest-fixture-config, psutil
+, pytest, pytest-shutil, pytest-fixture-config, psutil
 , requests, future, retry }:
 
 buildPythonPackage rec {
   pname = "pytest-server-fixtures";
-  version = "1.6.2";
+  version = "1.7.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c89f9532f62cf851489082ece1ec692b6ed5b0f88f20823bea25e2a963ebee8f";
+    sha256 = "07vdv3y89qzv89ws0y48h92yplqsx208b9cizx80w644dazb398g";
   };
 
-  buildInputs = [ pytest_3 ];
+  buildInputs = [ pytest ];
   propagatedBuildInputs = [ pytest-shutil pytest-fixture-config psutil requests future retry ];
 
   # RuntimeError: Unable to find a free server number to start Xvfb

pkgs/development/python-modules/pytest-shutil/default.nix

@@ -1,19 +1,19 @@
 { stdenv, lib, isPyPy, buildPythonPackage, fetchPypi
-, pytest_3, cmdline, pytestcov, coverage, setuptools-git, mock, pathpy, execnet
+, pytest, cmdline, pytestcov, coverage, setuptools-git, mock, pathpy, execnet
 , contextlib2, termcolor }:
 
 buildPythonPackage rec {
   pname = "pytest-shutil";
-  version = "1.6.0";
+  version = "1.7.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "efe615b7709637ec8828abebee7fc2ad033ae0f1fc54145f769a8b5e8cc3b4ca";
+    sha256 = "0q8j0ayzmnvlraml6i977ybdq4xi096djhf30n2m1rvnvrhm45nq";
   };
 
-  checkInputs = [ cmdline pytest_3 ];
+  checkInputs = [ cmdline pytest ];
   propagatedBuildInputs = [ pytestcov coverage setuptools-git mock pathpy execnet contextlib2 termcolor ];
-  nativeBuildInputs = [ pytest_3 ];
+  nativeBuildInputs = [ pytest ];
 
   checkPhase = ''
     py.test ${lib.optionalString isPyPy "-k'not (test_run or test_run_integration)'"}

pkgs/development/python-modules/pytest-virtualenv/default.nix

@@ -1,20 +1,20 @@
 { stdenv, buildPythonPackage, fetchPypi
-, pytest_3, pytestcov, mock, cmdline, pytest-fixture-config, pytest-shutil }:
+, pytest, pytestcov, mock, cmdline, pytest-fixture-config, pytest-shutil, virtualenv }:
 
 buildPythonPackage rec {
   pname = "pytest-virtualenv";
-  version = "1.6.0";
+  version = "1.7.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d281725d10848773cb2b495d1255dd0a42fc9179e34a274c22e1c35837721f19";
+    sha256 = "03w2zz3crblj1p6i8nq17946hbn3zqp9z7cfnifw47hi4a4fww12";
   };
 
-  checkInputs = [ pytest_3 pytestcov mock cmdline ];
+  checkInputs = [ pytest pytestcov mock cmdline ];
-  propagatedBuildInputs = [ pytest-fixture-config pytest-shutil ];
+  propagatedBuildInputs = [ pytest-fixture-config pytest-shutil virtualenv ];
   checkPhase = '' py.test tests/unit '';
 
-  nativeBuildInputs = [ pytest_3 ];
+  nativeBuildInputs = [ pytest ];
 
   meta = with stdenv.lib; {
     description = "Create a Python virtual environment in your test that cleans up on teardown. The fixture has utility methods to install packages and list what’s installed.";

pkgs/development/python-modules/pytest-xdist/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pytest-xdist";
-  version = "1.26.1";
+  version = "1.28.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d03d1ff1b008458ed04fa73e642d840ac69b4107c168e06b71037c62d7813dd4";
+    sha256 = "f83a485293e81fd57c8a5a85a3f12473a532c5ca7dec518857cbb72766bb526c";
   };
 
   nativeBuildInputs = [ setuptools_scm pytest ];

pkgs/development/python-modules/pytest/default.nix

@@ -1,9 +1,9 @@
 { stdenv, buildPythonPackage, pythonOlder, fetchPypi, attrs, hypothesis, py
 , setuptools_scm, setuptools, six, pluggy, funcsigs, isPy3k, more-itertools
-, atomicwrites, mock, writeText, pathlib2
+, atomicwrites, mock, writeText, pathlib2, wcwidth, packaging
 }:
 buildPythonPackage rec {
-  version = "4.2.1";
+  version = "4.6.3";
   pname = "pytest";
 
   preCheck = ''
@@ -13,12 +13,12 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c2396a15726218a2dfef480861c4ba37bd3952ebaaa5b0fede3fc23fddcd7f8c";
+    sha256 = "4a784f1d4f2ef198fe9b7aef793e9fa1a3b2f84e822d9b3a64a181293a572d45";
   };
 
   checkInputs = [ hypothesis mock ];
   buildInputs = [ setuptools_scm ];
-  propagatedBuildInputs = [ attrs py setuptools six pluggy more-itertools atomicwrites]
+  propagatedBuildInputs = [ attrs py setuptools six pluggy more-itertools atomicwrites wcwidth packaging ]
     ++ stdenv.lib.optionals (!isPy3k) [ funcsigs ]
     ++ stdenv.lib.optionals (pythonOlder "3.6") [ pathlib2 ];
 

pkgs/development/python-modules/scikit-build/default.nix

@@ -17,13 +17,14 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [ wheel setuptools packaging ];
   checkInputs = [ 
-    cmake ninja cython codecov coverage six virtualenv pathpy
+    cmake ninja cython codecov coverage six pathpy
     pytest pytestcov pytest-mock pytest-virtualenv pytestrunner
     requests flake8
   ];
 
   disabledTests = lib.concatMapStringsSep " and " (s: "not " + s) ([
     "test_hello_develop" # tries setuptools develop install
+    "test_source_distribution" # pip has no way to install missing dependencies
     "test_wheel" # pip has no way to install missing dependencies
     "test_fortran_compiler" # passes if gfortran is available
     "test_install_command" # tries to alter out path

pkgs/development/python-modules/scikitlearn/default.nix

@@ -1,22 +1,23 @@
-{ stdenv, buildPythonPackage, fetchPypi
+{ stdenv, buildPythonPackage, fetchPypi, python
-, gfortran, glibcLocales
+, gfortran, glibcLocales, joblib, pythonOlder
-, numpy, scipy, pytest, pillow
+, numpy, scipy, pytest, pillow, cython
 }:
 
 buildPythonPackage rec {
   pname = "scikit-learn";
-  version = "0.20.3";
+  version = "0.21.2";
   # UnboundLocalError: local variable 'message' referenced before assignment
-  disabled = stdenv.isi686;  # https://github.com/scikit-learn/scikit-learn/issues/5534
+  disabled = stdenv.isi686 || (pythonOlder "3.5");  # https://github.com/scikit-learn/scikit-learn/issues/5534
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c503802a81de18b8b4d40d069f5e363795ee44b1605f38bc104160ca3bfe2c41";
+    sha256 = "0aafc312a55ebf58073151b9308761a5fcfa45b7f7730cea4b1f066f824c72db";
   };
 
   buildInputs = [ pillow gfortran glibcLocales ];
-  propagatedBuildInputs = [ numpy scipy numpy.blas ];
+  propagatedBuildInputs = [ numpy scipy numpy.blas joblib ];
   checkInputs = [ pytest ];
+  nativeBuildInputs = [ cython ];
 
   LC_ALL="en_US.UTF-8";
 

pkgs/development/python-modules/txaio/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi, pytest_3, mock, six, twisted,isPy37 }:
+{ stdenv, buildPythonPackage, fetchPypi, pytest, mock, six, twisted,isPy37 }:
 
 buildPythonPackage rec {
   pname = "txaio";
@@ -9,7 +9,7 @@ buildPythonPackage rec {
     sha256 = "67e360ac73b12c52058219bb5f8b3ed4105d2636707a36a7cdafb56fe06db7fe";
   };
 
-  checkInputs = [ pytest_3 mock ];
+  checkInputs = [ pytest mock ];
 
   propagatedBuildInputs = [ six twisted ];
 
@@ -17,8 +17,8 @@ buildPythonPackage rec {
     py.test -k "not test_sdist"
   '';
 
-  # Needs some fixing for 3.7
+  # Needs some fixing
-  doCheck = !isPy37;
+  doCheck = false;
 
   meta = with stdenv.lib; {
     description = "Utilities to support code that runs unmodified on Twisted and asyncio.";

pkgs/development/python-modules/wcwidth/default.nix

@@ -11,6 +11,9 @@ buildPythonPackage rec {
 
   checkInputs = [ pytest ];
 
+  # To prevent infinite recursion with pytest
+  doCheck = false;
+
   checkPhase = ''
     pytest
   '';

pkgs/development/python-modules/werkzeug/default.nix

@@ -14,19 +14,12 @@ buildPythonPackage rec {
   propagatedBuildInputs = [ itsdangerous ];
   checkInputs = [ pytest requests hypothesis ];
 
-  # Hi! New version of Werkzeug? Please double-check that this commit is
-  # inclucded, and then remove the following patch.
-  # https://github.com/pallets/werkzeug/commit/1cfdcf9824cb20e362979e8f7734012926492165
-  patchPhase = ''
-    substituteInPlace "tests/test_serving.py" --replace "'python'" "sys.executable"
-  '';
-
   checkPhase = ''
     pytest ${stdenv.lib.optionalString stdenv.isDarwin "-k 'not test_get_machine_id'"}
   '';
 
   meta = with stdenv.lib; {
-    homepage = http://werkzeug.pocoo.org/;
+    homepage = "https://palletsprojects.com/p/werkzeug/";
     description = "A WSGI utility library for Python";
     license = licenses.bsd3;
   };

pkgs/development/python-modules/whoosh/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi, pytest_3 }:
+{ stdenv, buildPythonPackage, fetchPypi, pytest }:
 
 buildPythonPackage rec {
   pname = "Whoosh";
@@ -8,11 +8,12 @@ buildPythonPackage rec {
     sha256 = "10qsqdjpbc85fykc1vgcs8xwbgn4l2l52c8d83xf1q59pwyn79bw";
   };
 
-  checkInputs = [ pytest_3 ];
+  checkInputs = [ pytest ];
 
   # Wrong encoding
   postPatch = ''
     rm tests/test_reading.py
+    substituteInPlace setup.cfg --replace "[pytest]" "[tool:pytest]"
   '';
   checkPhase =  ''
     # FIXME: test_minimize_dfa fails on python 3.6
@@ -25,6 +26,5 @@ checking library.";
     homepage    = https://bitbucket.org/mchaput/whoosh;
     license     = licenses.bsd2;
     maintainers = with maintainers; [ nand0p ];
-    platforms   = platforms.all;
   };
 }

pkgs/development/python-modules/zeep/default.nix

@@ -26,11 +26,11 @@
 
 buildPythonPackage rec {
   pname = "zeep";
-  version = "3.3.1";
+  version = "3.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f58328e36264a2fda2484dd20bb1695f4102a9cc918178d60c4d7cf8339c65d0";
+    sha256 = "0e98669cfeb60756231ae185498f9ae21b30b2681786b8de58ed34c3b93e41dd";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/zipp/default.nix

@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "zipp";
-  version = "0.3.3";
+  version = "0.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "55ca87266c38af6658b84db8cfb7343cdb0bf275f93c7afaea0d8e7a209c7478";
+    sha256 = "ca943a7e809cc12257001ccfb99e3563da9af99d52f261725e96dfe0f9275bc3";
   };
 
   nativeBuildInputs = [ setuptools_scm ];
@@ -23,6 +23,9 @@ buildPythonPackage rec {
     pytest
   '';
 
+  # Prevent infinite recursion with pytest
+  doCheck = false;
+
   meta = with lib; {
     description = "Pathlib-compatible object wrapper for zip files";
     homepage = https://github.com/jaraco/zipp;

pkgs/development/tools/parsing/bison/3.x.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "bison";
-  version = "3.3.2";
+  version = "3.4.1";
 
   src = fetchurl {
     url = "mirror://gnu/${pname}/${pname}-${version}.tar.gz";
-    sha256 = "1lfvns1f6xamz9905fakzkxh4zmk1wa9w33vxcq78fc5841ivnhg";
+    sha256 = "15ah05gharrzcxs8q5pm9mli5dp5lw19nd95apzzmyqnqa4zq1vh";
   };
 
   nativeBuildInputs = [ m4 perl ] ++ stdenv.lib.optional stdenv.isSunOS help2man;

pkgs/games/residualvm/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchurl, SDL, zlib, libmpeg2, libmad, libogg, libvorbis, flac, alsaLib
-, libGLSupported
+, libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
 , openglSupport ? libGLSupported, libGLU_combined ? null
 }:
 

pkgs/games/steam/chrootenv.nix

@@ -138,7 +138,7 @@ in buildFHSUserEnv rec {
     libidn
     tbb
     wayland
-    mesa_noglu
+    mesa
     libxkbcommon
 
     # Other things from runtime

pkgs/games/tdm/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, binutils-unwrapped, scons, gnum4, p7zip, glibc_multi, mesa_noglu
+{ stdenv, fetchurl, binutils-unwrapped, scons, gnum4, p7zip, glibc_multi, mesa
 , xorg, libGLU_combined, openal
 , lib, makeWrapper, makeDesktopItem }:
 
@@ -27,7 +27,7 @@ in stdenv.mkDerivation {
     p7zip scons gnum4 makeWrapper
   ];
   buildInputs = [
-    glibc_multi mesa_noglu.dev xorg.libX11.dev openal
+    glibc_multi mesa.dev xorg.libX11.dev openal
     xorg.libXext.dev xorg.libXxf86vm.dev
     libGLU_combined
   ];

pkgs/misc/emulators/wine/base.nix

@@ -51,7 +51,7 @@ stdenv.mkDerivation ((lib.optionalAttrs (buildScript != null) {
   ++ lib.optionals openclSupport [ pkgs.opencl-headers pkgs.ocl-icd ]
   ++ lib.optionals xmlSupport    [ pkgs.libxml2 pkgs.libxslt ]
   ++ lib.optionals tlsSupport    [ pkgs.openssl pkgs.gnutls ]
-  ++ lib.optionals openglSupport [ pkgs.libGLU_combined pkgs.mesa_noglu.osmesa pkgs.libdrm ]
+  ++ lib.optionals openglSupport [ pkgs.libGLU_combined pkgs.mesa.osmesa pkgs.libdrm ]
   ++ lib.optionals stdenv.isDarwin (with pkgs.buildPackages.darwin.apple_sdk.frameworks; [
      CoreServices Foundation ForceFeedback AppKit OpenGL IOKit DiskArbitration Security
      ApplicationServices AudioToolbox CoreAudio AudioUnit CoreMIDI OpenAL OpenCL Cocoa Carbon

pkgs/os-specific/linux/bluez/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchurl, pkgconfig, dbus, glib, alsaLib,
-  python3, readline, udev, libical, systemd,
+  python3, readline, udev, libical, systemd, fetchpatch,
   enableWiimote ? false, enableMidi ? false, enableSixaxis ? false }:
 
 stdenv.mkDerivation rec {
@@ -23,7 +23,19 @@ stdenv.mkDerivation rec {
 
   outputs = [ "out" "dev" "test" ];
 
-  patches = [ ./bluez-5.37-obexd_without_systemd-1.patch ];
+  patches = [
+    ./bluez-5.37-obexd_without_systemd-1.patch
+    (fetchpatch {
+      url = "https://git.kernel.org/pub/scm/bluetooth/bluez.git/patch/?id=1880b299086659844889cdaf687133aca5eaf102";
+      name = "CVE-2018-10910-1.patch";
+      sha256 = "17spsxza27gif8jpxk7360ynvwii1llfdfwg35rwywjjmvww0qj4";
+    })
+    (fetchpatch {
+      url = "https://git.kernel.org/pub/scm/bluetooth/bluez.git/patch/?id=9213ff7642a33aa481e3c61989ad60f7985b9984";
+      name = "CVE-2018-10910-2.patch";
+      sha256 = "0j7klbhym64yhn86dbsmybqmwx47bviyyhx931izl1p29z2mg8hn";
+    })
+  ];
 
   postConfigure = ''
     substituteInPlace tools/hid2hci.rules \

pkgs/os-specific/linux/kmscube/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchgit, autoreconfHook, libdrm, libX11, libGL, mesa_noglu, pkgconfig }:
+{ stdenv, fetchgit, autoreconfHook, libdrm, libX11, libGL, mesa, pkgconfig }:
 
 stdenv.mkDerivation rec {
   name = "kmscube-2018-06-17";
@@ -10,7 +10,7 @@ stdenv.mkDerivation rec {
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
-  buildInputs = [ libdrm libX11 libGL mesa_noglu ];
+  buildInputs = [ libdrm libX11 libGL mesa ];
 
   meta = with stdenv.lib; {
     description = "Example OpenGL app using KMS/GBM";

pkgs/servers/x11/xorg/default.nix

@@ -1768,7 +1768,7 @@ lib.makeScope newScope (self: with self; {
     meta.platforms = stdenv.lib.platforms.unix;
   }) {};
 
-  xf86videoamdgpu = callPackage ({ stdenv, pkgconfig, fetchurl, xorgproto, mesa_noglu, libGL, libdrm, udev, xorgserver }: stdenv.mkDerivation {
+  xf86videoamdgpu = callPackage ({ stdenv, pkgconfig, fetchurl, xorgproto, mesa, libGL, libdrm, udev, xorgserver }: stdenv.mkDerivation {
     name = "xf86-video-amdgpu-19.0.1";
     builder = ./builder.sh;
     src = fetchurl {
@@ -1777,7 +1777,7 @@ lib.makeScope newScope (self: with self; {
     };
     hardeningDisable = [ "bindnow" "relro" ];
     nativeBuildInputs = [ pkgconfig ];
-    buildInputs = [ xorgproto mesa_noglu libGL libdrm udev xorgserver ];
+    buildInputs = [ xorgproto mesa libGL libdrm udev xorgserver ];
     meta.platforms = stdenv.lib.platforms.unix;
   }) {};
 
@@ -1820,7 +1820,7 @@ lib.makeScope newScope (self: with self; {
     meta.platforms = stdenv.lib.platforms.unix;
   }) {};
 
-  xf86videoati = callPackage ({ stdenv, pkgconfig, fetchurl, xorgproto, mesa_noglu, libGL, libdrm, udev, libpciaccess, xorgserver }: stdenv.mkDerivation {
+  xf86videoati = callPackage ({ stdenv, pkgconfig, fetchurl, xorgproto, mesa, libGL, libdrm, udev, libpciaccess, xorgserver }: stdenv.mkDerivation {
     name = "xf86-video-ati-19.0.1";
     builder = ./builder.sh;
     src = fetchurl {
@@ -1829,7 +1829,7 @@ lib.makeScope newScope (self: with self; {
     };
     hardeningDisable = [ "bindnow" "relro" ];
     nativeBuildInputs = [ pkgconfig ];
-    buildInputs = [ xorgproto mesa_noglu libGL libdrm udev libpciaccess xorgserver ];
+    buildInputs = [ xorgproto mesa libGL libdrm udev libpciaccess xorgserver ];
     meta.platforms = stdenv.lib.platforms.unix;
   }) {};
 

pkgs/servers/x11/xorg/generate-expr-from-tarballs.pl

@@ -36,7 +36,7 @@ $pcMap{"uuid"} = "libuuid";
 $pcMap{"libudev"} = "udev";
 $pcMap{"gl"} = "libGL";
 $pcMap{"GL"} = "libGL";
-$pcMap{"gbm"} = "mesa_noglu";
+$pcMap{"gbm"} = "mesa";
 $pcMap{"\$PIXMAN"} = "pixman";
 $pcMap{"\$RENDERPROTO"} = "xorgproto";
 $pcMap{"\$DRI3PROTO"} = "xorgproto";

pkgs/servers/x11/xorg/overrides.nix

@@ -3,7 +3,7 @@
   automake, autoconf, gettext, libiconv, libtool, intltool,
   freetype, tradcpp, fontconfig, meson, ninja,
   libGL, spice-protocol, zlib, libGLU, dbus, libunwind, libdrm,
-  mesa_noglu, udev, bootstrap_cmds, bison, flex, clangStdenv, autoreconfHook,
+  mesa, udev, bootstrap_cmds, bison, flex, clangStdenv, autoreconfHook,
   mcpp, epoxy, openssl, pkgconfig, llvm_6,
   cf-private, ApplicationServices, Carbon, Cocoa, Xplugin
 }:
@@ -382,7 +382,7 @@ self: super:
   });
 
   xf86videovmware = super.xf86videovmware.overrideAttrs (attrs: {
-    buildInputs =  attrs.buildInputs ++ [ mesa_noglu llvm_6 ]; # for libxatracker
+    buildInputs =  attrs.buildInputs ++ [ mesa llvm_6 ]; # for libxatracker
     meta = attrs.meta // {
       platforms = ["i686-linux" "x86_64-linux"];
     };
@@ -507,7 +507,7 @@ self: super:
       if (!isDarwin)
       then {
         outputs = [ "out" "dev" ];
-        buildInputs = commonBuildInputs ++ [ libdrm mesa_noglu ];
+        buildInputs = commonBuildInputs ++ [ libdrm mesa ];
         propagatedBuildInputs = [ libpciaccess epoxy ] ++ commonPropagatedBuildInputs ++ lib.optionals stdenv.isLinux [
           udev
         ];

pkgs/tools/X11/primus/lib.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, fetchpatch
-, libX11, libGL, mesa_noglu
+, libX11, libGL, mesa
 , nvidia_x11 ? null
 , libglvnd
 }:
@@ -33,7 +33,7 @@ in stdenv.mkDerivation {
   makeFlags = [ "LIBDIR=$(out)/lib"
                 "PRIMUS_libGLa=${aPackage}/lib/libGL.so"
                 "PRIMUS_libGLd=${libGL}/lib/libGL.so"
-                "PRIMUS_LOAD_GLOBAL=${mesa_noglu}/lib/libglapi.so"
+                "PRIMUS_LOAD_GLOBAL=${mesa}/lib/libglapi.so"
               ];
 
   installPhase = ''

pkgs/tools/graphics/asymptote/default.nix

@@ -1,6 +1,6 @@
 {stdenv, fetchurl, fetchpatch
   , freeglut, ghostscriptX, imagemagick, fftw
-  , boehmgc, libGLU, libGL, mesa_noglu, ncurses, readline, gsl, libsigsegv
+  , boehmgc, libGLU, libGL, mesa, ncurses, readline, gsl, libsigsegv
   , python, zlib, perl, texLive, texinfo, xz
 , darwin
 }:
@@ -20,7 +20,7 @@ let
    boehmgc ncurses readline gsl libsigsegv
    python zlib perl texLive texinfo xz ]
    ++ stdenv.lib.optionals stdenv.isLinux
-     [ freeglut libGLU libGL mesa_noglu.osmesa ]
+     [ freeglut libGLU libGL mesa.osmesa ]
    ++ stdenv.lib.optionals stdenv.isDarwin
      (with darwin.apple_sdk.frameworks; [ OpenGL GLUT Cocoa ])
    ;

pkgs/tools/graphics/glmark2/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, pkgconfig, libjpeg, libpng, xorg, libX11, libGL, libdrm,
-  python27, wayland, udev, mesa_noglu, wafHook }:
+  python27, wayland, udev, mesa, wafHook }:
 
 stdenv.mkDerivation rec {
   name = "glmark2-${version}";
@@ -14,7 +14,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ pkgconfig wafHook ];
   buildInputs = [
-    libjpeg libpng xorg.libxcb libX11 libGL libdrm python27 wayland udev mesa_noglu
+    libjpeg libpng xorg.libxcb libX11 libGL libdrm python27 wayland udev mesa
   ];
 
   wafConfigureFlags = ["--with-flavors=x11-gl,x11-glesv2,drm-gl,drm-glesv2,wayland-gl,wayland-glesv2"];

pkgs/tools/misc/coreutils/default.nix

@@ -36,6 +36,10 @@ stdenv.mkDerivation rec {
     sed '2i echo Skipping rm deep-2 test && exit 77' -i ./tests/rm/deep-2.sh
     sed '2i echo Skipping du long-from-unreadable test && exit 77' -i ./tests/du/long-from-unreadable.sh
 
+    # Some target platforms, especially when building inside a container have
+    # issues with the inotify test.
+    sed '2i echo Skipping tail inotify dir recreate test && exit 77' -i ./tests/tail-2/inotify-dir-recreate.sh
+
     # sandbox does not allow setgid
     sed '2i echo Skipping chmod setgid test && exit 77' -i ./tests/chmod/setgid.sh
     substituteInPlace ./tests/install/install-C.sh \

pkgs/tools/misc/less/default.nix

@@ -1,11 +1,12 @@
 { stdenv, fetchurl, ncurses, lessSecure ? false }:
 
 stdenv.mkDerivation rec {
-  name = "less-530";
+  pname = "less";
+  version = "551";
 
   src = fetchurl {
-    url = "http://www.greenwoodsoftware.com/less/${name}.tar.gz";
+    url = "http://www.greenwoodsoftware.com/${pname}/${pname}-${version}.tar.gz";
-    sha256 = "1qpj2z38c53qmvqn8jaa0kq26q989cfbfjj4y0s6z17l1amr2gsh";
+    sha256 = "0ggyjl3yzn7c450zk1rixi9ls6asdhgqynhk34zsd0ckhmsm45pz";
   };
 
   configureFlags = [ "--sysconfdir=/etc" ] # Look for ‘sysless’ in /etc.
@@ -18,6 +19,6 @@ stdenv.mkDerivation rec {
     description = "A more advanced file pager than ‘more’";
     platforms = platforms.unix;
     license = licenses.gpl3;
-    maintainers = [ maintainers.eelco ];
+    maintainers = with maintainers; [ eelco dtzWill ];
   };
 }

pkgs/tools/networking/network-manager/default.nix

@@ -11,11 +11,11 @@ let
   pythonForDocs = python3.withPackages (pkgs: with pkgs; [ pygobject3 ]);
 in stdenv.mkDerivation rec {
   name = "network-manager-${version}";
-  version = "1.18.0";
+  version = "1.18.1";
 
   src = fetchurl {
     url = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "19lb5afx4iq8dgfsy26x9j4194v8f64vwr3nq6dk1ix3wljxzs66";
+    sha256 = "07vg2ryyjaxs5h8kmkwqhk4ki750c4di98g0i7h7zglfs16psiqd";
   };
 
   outputs = [ "out" "dev" "devdoc" "man" "doc" ];

pkgs/tools/networking/openconnect/default.nix

@@ -4,13 +4,13 @@ assert (openssl != null) == (gnutls == null);
 
 stdenv.mkDerivation rec {
   pname = "openconnect";
-  version = "8.02";
+  version = "8.03";
 
   src = fetchurl {
     urls = [
       "ftp://ftp.infradead.org/pub/openconnect/${pname}-${version}.tar.gz"
     ];
-    sha256 = "04p0vzc1791h68hd9803wsyb64zrwm8qpdqx0szhj9pig71g5a0w";
+    sha256 = "1wlypi68kqqg2mdck8wvf6aanhrmf9i7z6lngyxvcrp23jdzz34h";
   };
 
   outputs = [ "out" "dev" ];

pkgs/tools/security/enpass/default.nix

@@ -2,7 +2,7 @@
 , glib, libGLU_combined, libpulseaudio, zlib, dbus, fontconfig, freetype
 , gtk3, pango
 , makeWrapper , python, pythonPackages, lib
-, lsof, curl, libuuid, cups, mesa_drivers
+, lsof, curl, libuuid, cups, mesa
 }:
 
 let
@@ -18,7 +18,7 @@ let
 
   # used of both wrappers and libpath
   libPath = lib.makeLibraryPath (with xorg; [
-    mesa_drivers
+    mesa.drivers
     libGLU_combined
     fontconfig
     freetype

pkgs/top-level/aliases.nix

@@ -174,6 +174,7 @@ mapAliases ({
   libgnome_keyring = libgnome-keyring; # added 2018-02-25
   libgnome_keyring3 = libgnome-keyring3; # added 2018-02-25
   libgumbo = gumbo; # added 2018-01-21
+  libGL_driver = mesa.drivers;
   libintlOrEmpty = stdenv.lib.optional (!stdenv.isLinux || stdenv.hostPlatform.libc != "glibc") gettext; # added 2018-03-14
   libjson_rpc_cpp = libjson-rpc-cpp; # added 2017-02-28
   liblapackWithoutAtlas = liblapack; # added 2018-11-05
@@ -193,6 +194,12 @@ mapAliases ({
   man_db = man-db; # added 2016-05
   manpages = man-pages; # added 2015-12-06
   memtest86 = memtest86plus; # added 2019-05-08
+  mesa_noglu = mesa; # added 2019-05-28
+  # NOTE: 2018-07-12: legacy alias:
+  # gcsecurity bussiness is done: https://www.theregister.co.uk/2018/02/08/bruce_perens_grsecurity_anti_slapp/
+  # floating point textures patents are expired,
+  # so package reduced to alias
+  mesa_drivers = mesa.drivers;
   midoriWrapper = midori; # added 2015-01
   mlt-qt5 = libsForQt5.mlt;  # added 2015-12-19
   mobile_broadband_provider_info = mobile-broadband-provider-info; # added 2018-02-25

pkgs/top-level/all-packages.nix

@@ -1083,9 +1083,7 @@ in
 
   blockdiag = with python3Packages; toPythonApplication blockdiag;
 
-  blsd = callPackage ../tools/misc/blsd {
+  blsd = callPackage ../tools/misc/blsd { };
-    libgit2 = libgit2_0_27;
-  };
 
   bluez-alsa = callPackage ../tools/bluetooth/bluez-alsa { };
 
@@ -10216,7 +10214,7 @@ in
   # Multi-arch "drivers" which we want to build for i686.
   driversi686Linux = recurseIntoAttrs {
     inherit (pkgsi686Linux)
-      mesa_drivers
+      mesa
       vaapiIntel
       libvdpau-va-gl
       vaapiVdpau
@@ -10512,10 +10510,6 @@ in
     inherit (darwin.apple_sdk.frameworks) Security;
   };
 
-  libgit2_0_27 = callPackage ../development/libraries/git2/0.27.nix {
-    inherit (darwin.apple_sdk.frameworks) Security;
-  };
-
   libgit2-glib = callPackage ../development/libraries/libgit2-glib { };
 
   glbinding = callPackage ../development/libraries/glbinding { };
@@ -12236,7 +12230,7 @@ in
   # libGL.so/libEGL.so/... to link agains them. Android NDK provides
   # an OpenGL implementation, we can just use that.
   libGL = if stdenv.hostPlatform.useAndroidPrebuilt then stdenv
-          else mesa_noglu.stubs;
+          else mesa.stubs;
 
   # Default libGLU
   libGLU = mesa_glu;
@@ -12251,29 +12245,17 @@ in
     extraOutputsToInstall = [ "dev" ];
   };
 
-  # Default derivation with libGL.so.1 to link into /run/opengl-drivers (if need)
+  mesa = callPackage ../development/libraries/mesa {
-  libGL_driver = mesa_drivers;
-
-  libGLSupported = lib.elem stdenv.hostPlatform.system lib.platforms.mesaPlatforms;
-
-  mesa_noglu = callPackage ../development/libraries/mesa {
     # 7 is the default, but only on Linux, so keep this for now
     llvmPackages = llvmPackages_7;
     inherit (darwin.apple_sdk.frameworks) OpenGL;
     inherit (darwin.apple_sdk.libs) Xplugin;
   };
-  mesa = mesa_noglu;
 
   mesa_glu =  callPackage ../development/libraries/mesa-glu {
     inherit (darwin.apple_sdk.frameworks) ApplicationServices;
   };
 
-  # NOTE: 2018-07-12: legacy alias:
-  # gcsecurity bussiness is done: https://www.theregister.co.uk/2018/02/08/bruce_perens_grsecurity_anti_slapp/
-  # floating point textures patents are expired,
-  # so package reduced to alias
-  mesa_drivers = mesa_noglu.drivers;
-
   ## End libGL/libGLU/Mesa stuff
 
   meterbridge = callPackage ../applications/audio/meterbridge { };

pkgs/top-level/python-packages.nix

@@ -250,6 +250,10 @@ in {
 
   azure-nspkg = callPackage ../development/python-modules/azure-nspkg { };
 
+  azure-cli-core = callPackage ../development/python-modules/azure-cli-core { };
+
+  azure-cli-telemetry = callPackage ../development/python-modules/azure-cli-telemetry { };
+
   azure-common = callPackage ../development/python-modules/azure-common { };
 
   azure-cosmos = callPackage ../development/python-modules/azure-cosmos { };
@@ -1090,6 +1094,8 @@ in {
 
   amqplib = callPackage ../development/python-modules/amqplib {};
 
+  antlr4-python2-runtime = callPackage ../development/python-modules/antlr4-python2-runtime {};
+
   antlr4-python3-runtime = callPackage ../development/python-modules/antlr4-python3-runtime {};
 
   apipkg = callPackage ../development/python-modules/apipkg {};
@@ -1688,9 +1694,9 @@ in {
 
   pyhepmc = callPackage ../development/python-modules/pyhepmc { };
 
-  pytest = self.pytest_42;
+  pytest = self.pytest_4;
 
-  pytest_42 = callPackage ../development/python-modules/pytest {
+  pytest_4 = callPackage ../development/python-modules/pytest {
     # hypothesis tests require pytest that causes dependency cycle
     hypothesis = self.hypothesis.override { doCheck = false; };
   };
@@ -3158,6 +3164,8 @@ in {
 
   kitchen = callPackage ../development/python-modules/kitchen { };
 
+  knack = callPackage ../development/python-modules/knack { };
+
   kubernetes = callPackage ../development/python-modules/kubernetes { };
 
   pylast = callPackage ../development/python-modules/pylast { };