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elastix: update for ITK 5.1.0 

- fetch patches to build elastix 5.0 with ITK 5.1
- update 'platforms': builds on Darwin, fails on aarch64
This commit is contained in:
Ben Darwin 2020-04-27 15:04:43 -04:00
parent 6f1430a802
commit 5caa76705b
1 changed files with 17 additions and 3 deletions
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20
pkgs/development/libraries/science/biology/elastix/default.nix
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@ -1,4 +1,4 @@
{ stdenv, fetchFromGitHub, cmake, itk, python3 }: { stdenv, fetchFromGitHub, fetchpatch, cmake, itk, python3 }:
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "elastix"; pname = "elastix";
@ -11,10 +11,24 @@ stdenv.mkDerivation rec {
sha256 = "1zrl7rz4lwsx88b2shnl985f3a97lmp4ksbd437h9y0hfjq8l0lj"; sha256 = "1zrl7rz4lwsx88b2shnl985f3a97lmp4ksbd437h9y0hfjq8l0lj";
}; };
patches = [
(fetchpatch {
name = "itk-5.1-compat.patch";
url = "https://github.com/SuperElastix/elastix/commit/402e9a26f22f805b8f2db00c00e59f75fa1783ad.patch";
sha256 = "1il6gc1lgy78i0w6gkkppr61nh6g0yjspbfk19hcz20778m5jhz9";
})
(fetchpatch {
name = "fix-osx-build.patch";
url = "https://github.com/SuperElastix/elastix/commit/52e1dc3928046f9fbb85d4b2ecd0d5175fa9695d.patch";
sha256 = "1hf7kgx1jv497pf0x5wj79sy1wncxcvhrkix9w086lcr8zwxvn9q";
})
];
nativeBuildInputs = [ cmake python3 ]; nativeBuildInputs = [ cmake python3 ];
buildInputs = [ itk ]; buildInputs = [ itk ];
doCheck = true; doCheck = !stdenv.isDarwin; # usual dynamic linker issues
preCheck = " preCheck = "
export LD_LIBRARY_PATH=$(pwd)/bin export LD_LIBRARY_PATH=$(pwd)/bin
@ -24,7 +38,7 @@ stdenv.mkDerivation rec {
homepage = "http://elastix.isi.uu.nl/"; homepage = "http://elastix.isi.uu.nl/";
description = "Image registration toolkit based on ITK"; description = "Image registration toolkit based on ITK";
maintainers = with maintainers; [ bcdarwin ]; maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.linux; platforms = platforms.x86_64; # libitkpng linker issues with ITK 5.1
license = licenses.asl20; license = licenses.asl20;
}; };
} }