Merge branch 'master' into staging

pkgs/development/compilers/gcc/6/darwin-const-correct.patch

@@ -0,0 +1,25 @@
+From 5972cd58bde3bc8bacfe994e5b127c411241f255 Mon Sep 17 00:00:00 2001
+From: law <law@138bc75d-0d04-0410-961f-82ee72b054a4>
+Date: Tue, 3 Jan 2017 05:36:40 +0000
+Subject: [PATCH] 	* config/darwin-driver.c (darwin_driver_init):
+ Const-correctness 	fixes for first_period and second_period variables.
+
+git-svn-id: svn+ssh://gcc.gnu.org/svn/gcc/trunk@244010 138bc75d-0d04-0410-961f-82ee72b054a4
+---
+diff --git a/gcc/config/darwin-driver.c b/gcc/config/darwin-driver.c
+index 0c4f0cd..e3ed79d 100644
+--- a/gcc/config/darwin-driver.c
++++ b/gcc/config/darwin-driver.c
+@@ -299,10 +299,10 @@ darwin_driver_init (unsigned int *decoded_options_count,
+   if (vers_string != NULL)
+     {
+       char *asm_major = NULL;
+-      char *first_period = strchr(vers_string, '.');
++      const char *first_period = strchr(vers_string, '.');
+       if (first_period != NULL)
+ 	{
+-	  char *second_period = strchr(first_period+1, '.');
++	  const char *second_period = strchr(first_period+1, '.');
+ 	  if (second_period  != NULL)
+ 	    asm_major = xstrndup (vers_string, second_period-vers_string);
+ 	  else

pkgs/development/compilers/gcc/6/default.nix

@@ -73,7 +73,8 @@ let version = "6.3.0";
       # The GNAT Makefiles did not pay attention to CFLAGS_FOR_TARGET for its
       # target libraries and tools.
       ++ optional langAda ../gnat-cflags.patch
-      ++ optional langFortran ../gfortran-driving.patch;
+      ++ optional langFortran ../gfortran-driving.patch
+      ++ optional stdenv.isDarwin ./darwin-const-correct.patch; # Kill this after 6.3.0
 
     javaEcj = fetchurl {
       # The `$(top_srcdir)/ecj.jar' file is automatically picked up at

pkgs/development/libraries/itk/default.nix

@@ -1,13 +1,20 @@
-{ stdenv, fetchurl, cmake, libX11, libuuid, xz, vtk }:
+{ stdenv, fetchurl, fetchpatch, cmake, libX11, libuuid, xz, vtk }:
 
 stdenv.mkDerivation rec {
-  name = "itk-4.10.0";
+  name = "itk-4.11.0";
 
   src = fetchurl {
-    url = mirror://sourceforge/itk/InsightToolkit-4.10.0.tar.xz;
-    sha256 = "0pxijhqsnwcp9jv1d8p11hsj90k8ajpwxhrnn8kk8c56k7y1207a";
+    url = mirror://sourceforge/itk/InsightToolkit-4.11.0.tar.xz;
+    sha256 = "0axvyds0gads5914g0m70z5q16gzghr0rk0hy3qjpf1k9bkxvcq6";
   };
 
+  # Clang 4 dislikes signed comparisons of pointers against integers. Should no longer be
+  # necessary once we get past ITK 4.11.
+  patches = [ (fetchpatch {
+    url    = "https://github.com/InsightSoftwareConsortium/ITK/commit/d1407a55910ad9c232f3d241833cfd2e59024946.patch";
+    sha256 = "0h851afkv23fwgkibjss30fkbz4nkfg6rmmm4pfvkwpml23gzz7s";
+  }) ];
+
   cmakeFlags = [
     "-DBUILD_TESTING=OFF"
     "-DBUILD_EXAMPLES=OFF"

pkgs/development/libraries/podofo/default.nix

@@ -10,8 +10,12 @@ stdenv.mkDerivation rec {
   };
 
   propagatedBuildInputs = [ zlib freetype libjpeg libtiff fontconfig openssl libpng libidn expat ];
-  nativeBuildInputs = [ cmake gcc5 pkgconfig ];
-  buildInputs = [ lua5 stdenv.cc.libc ];
+
+  # Does Linux really need gcc5? Darwin doesn't seem to...
+  nativeBuildInputs = [ cmake pkgconfig ] ++ stdenv.lib.optional stdenv.isLinux gcc5;
+
+  # Does Linux really need libc here? Darwin doesn't seem to...
+  buildInputs = [ lua5 ] ++ stdenv.lib.optional stdenv.isLinux stdenv.cc.libc;
 
   crossAttrs = {
     propagatedBuildInputs = [ zlib.crossDrv freetype.crossDrv libjpeg.crossDrv

pkgs/development/tools/scalafmt/default.nix

@@ -1,13 +1,13 @@
 { stdenv, fetchurl, unzip, jre }:
 
 stdenv.mkDerivation rec {
-  version = "0.6.7";
+  version = "0.6.8";
   baseName = "scalafmt";
   name = "${baseName}-${version}";
 
   src = fetchurl {
     url = "https://github.com/scalameta/scalafmt/releases/download/v${version}/${baseName}.tar.gz";
-    sha256 = "122x4a5x8024s7qqqs7vx8kz1x18q2l6alcvpzvsqkc304ybhfmh";
+    sha256 = "1iaanrxk5lhxx1zj9gbxzgqbnyy1azfrab984mga7di5z1hs02s2";
   };
 
   unpackPhase = "tar xvzf $src";