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Merge pull request #10343 from michelk/r-modules/patch 

R: fix some modules with configure-shebang-error
This commit is contained in:
Peter Simons 2015-10-12 10:15:35 +02:00
parent d21347a919 ec8f31d26c
commit 538c1f4a60
1 changed files with 4 additions and 5 deletions
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9
pkgs/development/r-modules/default.nix
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@ -999,7 +999,6 @@ let
"DESeq" # broken build "DESeq" # broken build
"DESP" # broken build "DESP" # broken build
"destiny" # depends on broken package VIM-4.3.0 "destiny" # depends on broken package VIM-4.3.0
"devtools" # broken build
"DEXSeq" # depends on broken package Rsamtools-1.21.8 "DEXSeq" # depends on broken package Rsamtools-1.21.8
"dexus" # broken build "dexus" # broken build
"DFP" # broken build "DFP" # broken build
@ -1573,7 +1572,6 @@ let
"npIntFactRep" # depends on broken package nlopt-2.4.2 "npIntFactRep" # depends on broken package nlopt-2.4.2
"NSM3" # broken build "NSM3" # broken build
"nucleR" # depends on broken package Rsamtools-1.21.8 "nucleR" # depends on broken package Rsamtools-1.21.8
"oai" # depends on broken package r-xml2-0.1.2
"OCplus" # broken build "OCplus" # broken build
"OGSA" # broken build "OGSA" # broken build
"oligoClasses" # depends on broken package affyio-1.37.0 "oligoClasses" # depends on broken package affyio-1.37.0
@ -1934,7 +1932,6 @@ let
"RUVnormalize" # Build Is Broken "RUVnormalize" # Build Is Broken
"RUVSeq" # depends on broken package Rsamtools-1.21.8 "RUVSeq" # depends on broken package Rsamtools-1.21.8
"RVAideMemoire" # depends on broken package nlopt-2.4.2 "RVAideMemoire" # depends on broken package nlopt-2.4.2
"rversions" # broken build
"rvest" # broken build "rvest" # broken build
"RVFam" # depends on broken package nlopt-2.4.2 "RVFam" # depends on broken package nlopt-2.4.2
"RVideoPoker" # depends on broken package rpanel-1.1-3 "RVideoPoker" # depends on broken package rpanel-1.1-3
@ -2153,7 +2150,6 @@ let
"XDE" # broken build "XDE" # broken build
"x_ent" # broken build "x_ent" # broken build
"xergm" # depends on broken package nlopt-2.4.2 "xergm" # depends on broken package nlopt-2.4.2
"xml2" # broken build
"xps" # build is broken "xps" # build is broken
"XVector" # broken build "XVector" # broken build
"yaqcaffy" # depends on broken package affyio-1.37.0 "yaqcaffy" # depends on broken package affyio-1.37.0
@ -2177,7 +2173,10 @@ let
}); });
xml2 = old.xml2.overrideDerivation (attrs: { xml2 = old.xml2.overrideDerivation (attrs: {
preConfigure = "export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2"; preConfigure = ''
export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2
patchShebangs configure
'';
}); });
curl = old.curl.overrideDerivation (attrs: { curl = old.curl.overrideDerivation (attrs: {