Merge staging-next into master, closes #65497

pkgs/development/python-modules/Cython/default.nix

@@ -25,11 +25,11 @@ let
 
 in buildPythonPackage rec {
   pname = "Cython";
-  version = "0.29.10";
+  version = "0.29.13";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "26229570d6787ff3caa932fe9d802960f51a89239b990d275ae845405ce43857";
+    sha256 = "c29d069a4a30f472482343c866f7486731ad638ef9af92bfe5fca9c7323d638e";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/bcrypt/default.nix

@@ -4,12 +4,12 @@
 with stdenv.lib;
 
 buildPythonPackage rec {
-  version = "3.1.6";
+  version = "3.1.7";
   pname = "bcrypt";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "44636759d222baa62806bbceb20e96f75a015a6381690d1bc2eda91c01ec02ea";
+    sha256 = "0b0069c752ec14172c5f78208f1863d7ad6755a6fae6fe76ec2c80d13be41e42";
   };
   buildInputs = [ pycparser mock pytest py ];
   propagatedBuildInputs = [ six ] ++ optional (!isPyPy) cffi;

pkgs/development/python-modules/cairocffi/0_9.nix

@@ -1,4 +1,4 @@
-# FIXME: make gdk_pixbuf dependency optional
+# FIXME: make gdk-pixbuf dependency optional
 { stdenv
 , buildPythonPackage
 , pythonOlder
@@ -15,7 +15,7 @@
 , withXcffib ? false, xcffib
 , python
 , glib
-, gdk_pixbuf
+, gdk-pixbuf
 }@args:
 
 import ./generic.nix ({

pkgs/development/python-modules/cairocffi/default.nix

@@ -1,4 +1,4 @@
-# FIXME: make gdk_pixbuf dependency optional
+# FIXME: make gdk-pixbuf dependency optional
 { stdenv
 , buildPythonPackage
 , pythonOlder
@@ -15,7 +15,7 @@
 , withXcffib ? false, xcffib
 , python
 , glib
-, gdk_pixbuf
+, gdk-pixbuf
 }@args:
 
 import ./generic.nix ({

pkgs/development/python-modules/cairocffi/dlopen-paths-0.9.patch

@@ -3,7 +3,7 @@ Author: Alexander V. Nikolaev <avn@avnik.info>
 Date:   Sat Feb 6 08:09:06 2016 +0200
 
     Patch dlopen() to allow direct paths to all required libs
-    
+
     This patch is NixOS specific
 
 diff --git a/cairocffi/__init__.py b/cairocffi/__init__.py
@@ -13,15 +13,15 @@ index 718aa7f..1a1dcff 100644
 @@ -27,20 +27,22 @@ VERSION = '0.7.2'
  version = '1.10.0'
  version_info = (1, 10, 0)
- 
+
 +# Use hardcoded soname, because ctypes.util use gcc/objdump which shouldn't be required for runtime
 +_LIBS = {
 +    'cairo': '@cairo@/lib/libcairo@ext@',
 +    'glib-2.0': '@glib@/lib/libglib-2.0@ext@',
 +    'gobject-2.0': '@glib@/lib/libgobject-2.0@ext@',
-+    'gdk_pixbuf-2.0': '@gdk_pixbuf@/lib/libgdk_pixbuf-2.0@ext@',
++    'gdk-pixbuf-2.0': '@gdk_pixbuf@/lib/libgdk_pixbuf-2.0@ext@',
 +}
- 
+
 -def dlopen(ffi, *names):
 +def dlopen(ffi, name, *names):
      """Try various names for the same library, for different platforms."""
@@ -42,6 +42,6 @@ index 718aa7f..1a1dcff 100644
 +        if lib:
 +            return lib
 +    raise OSError("dlopen() failed to load a library: %s as %s" % (name, path))
- 
- 
+
+
  cairo = dlopen(ffi, 'cairo', 'cairo-2')

pkgs/development/python-modules/cairocffi/dlopen-paths.patch

@@ -3,7 +3,7 @@ Author: Alexander V. Nikolaev <avn@avnik.info>
 Date:   Sat Feb 6 08:09:06 2016 +0200
 
     Patch dlopen() to allow direct paths to all required libs
-    
+
     This patch is NixOS specific
 
 diff --git a/cairocffi/__init__.py b/cairocffi/__init__.py
@@ -13,15 +13,15 @@ index 6061973..3538a58 100644
 @@ -21,19 +21,22 @@ VERSION = __version__ = (Path(__file__).parent / 'VERSION').read_text().strip()
  version = '1.16.0'
  version_info = (1, 16, 0)
- 
+
 +# Use hardcoded soname, because ctypes.util use gcc/objdump which shouldn't be required for runtime
 +_LIBS = {
 +    'cairo': '@cairo@/lib/libcairo@ext@',
 +    'glib-2.0': '@glib@/lib/libglib-2.0@ext@',
 +    'gobject-2.0': '@glib@/lib/libgobject-2.0@ext@',
-+    'gdk_pixbuf-2.0': '@gdk_pixbuf@/lib/libgdk_pixbuf-2.0@ext@',
++    'gdk-pixbuf-2.0': '@gdk_pixbuf@/lib/libgdk_pixbuf-2.0@ext@',
 +}
- 
+
 -def dlopen(ffi, *names):
 +def dlopen(ffi, name, *names):
      """Try various names for the same library, for different platforms."""
@@ -41,6 +41,6 @@ index 6061973..3538a58 100644
 +        if lib:
 +            return lib
 +    raise OSError("dlopen() failed to load a library: %s as %s" % (name, path))
- 
- 
+
+
  cairo = dlopen(ffi, 'cairo', 'cairo-2', 'cairo-gobject-2', 'cairo.so.2')

pkgs/development/python-modules/cairocffi/generic.nix

@@ -31,13 +31,13 @@ buildPythonPackage rec {
   '';
 
   patches = [
-    # OSError: dlopen() failed to load a library: gdk_pixbuf-2.0 / gdk_pixbuf-2.0-0
+    # OSError: dlopen() failed to load a library: gdk-pixbuf-2.0 / gdk-pixbuf-2.0-0
     (substituteAll {
       src = dlopen_patch;
       ext = stdenv.hostPlatform.extensions.sharedLibrary;
       cairo = cairo.out;
       glib = glib.out;
-      gdk_pixbuf = gdk_pixbuf.out;
+      gdk_pixbuf = gdk-pixbuf.out;
     })
     ./fix_test_scaled_font.patch
   ];

pkgs/development/python-modules/certifi/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "certifi";
-  version = "2019.3.9";
+  version = "2019.6.16";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1bnpw7hrf9i1l9gfxjnzi45hkrvzz0pyn9ia8m4mw7sxhgb08qdj";
+    sha256 = "945e3ba63a0b9f577b1395204e13c3a231f9bc0223888be653286534e5873695";
   };
 
   meta = {

pkgs/development/python-modules/cytoolz/default.nix

@@ -10,22 +10,13 @@
 
 buildPythonPackage rec {
   pname = "cytoolz";
-  version = "0.9.0.1";
+  version = "0.10.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "84cc06fa40aa310f2df79dd440fc5f84c3e20f01f9f7783fc9c38d0a11ba00e5";
+    sha256 = "ed9f6a07c2bac70d6c597df360d0666d11d2adc90141d54c5c2db08b380a4fac";
   };
 
-  patches = [
-    # temporal fix for a test failure: https://github.com/pytoolz/cytoolz/issues/122
-    (fetchpatch {
-      name = "py37.patch";
-      url = https://salsa.debian.org/python-team/modules/python-cytoolz/raw/5ce4158deefc47475d1e76813f900e6c72ddcc6e/debian/patches/py37.patch;
-      sha256 = "1z29y7s5n751q3f74r3bz0f48yg6izvi68hc4pkwcalxmkq5r1n9";
-    })
-  ];
-
   # Extension types
   disabled = isPyPy;
 

pkgs/development/python-modules/glob2/default.nix

@@ -0,0 +1,26 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "glob2";
+  version = "0.7";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "135bj8gm6vn45vv0phrvhyir36kfm17y7kmasxinv8lagk8dphw5";
+  };
+
+  checkPhase = ''
+    ${python.interpreter} test.py
+  '';
+
+  meta = with lib; {
+    description = "Version of the glob module that can capture patterns and supports recursive wildcards";
+    homepage = https://github.com/miracle2k/python-glob2/;
+    license = licenses.bsd3;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/ipython/default.nix

@@ -22,25 +22,18 @@
 
 buildPythonPackage rec {
   pname = "ipython";
-  version = "7.5.0";
+  version = "7.6.1";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e840810029224b56cd0d9e7719dc3b39cf84d577f8ac686547c8ba7a06eeab26";
+    sha256 = "11067ab11d98b1e6c7f0993506f7a5f8a91af420f7e82be6575fcb7a6ca372a0";
   };
 
   prePatch = lib.optionalString stdenv.isDarwin ''
     substituteInPlace setup.py --replace "'gnureadline'" " "
   '';
 
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/ipython/ipython/commit/e1b53e9ef91a43b9e275bb9e48b4253218375d87.patch";
-      sha256 = "sha256:0q7zsgalwxss6aikhakbdkvvz0g4ac4sa3ncrklm74ksqh56rsgb";
-    })
-  ];
-
   buildInputs = [ glibcLocales ];
 
   checkInputs = [ nose pygments ];

pkgs/development/python-modules/ipywidgets/default.nix

@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "ipywidgets";
-  version = "7.4.2";
+  version = "7.5.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a3e224f430163f767047ab9a042fc55adbcab0c24bbe6cf9f306c4f89fdf0ba3";
+    sha256 = "cb263c6974aca902d00a435711823bb4aaf6614a5f997f517e15fa84151e8fa2";
   };
 
   # Tests are not distributed

pkgs/development/python-modules/jupyter_client/default.nix

@@ -16,11 +16,11 @@
 
 buildPythonPackage rec {
   pname = "jupyter_client";
-  version = "5.2.4";
+  version = "5.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b5f9cb06105c1d2d30719db5ffb3ea67da60919fb68deaefa583deccd8813551";
+    sha256 = "98e8af5edff5d24e4d31e73bc21043130ae9d955a91aa93fc0bc3b1d0f7b5880";
   };
 
   checkInputs = [ ipykernel ipython mock pytest ];

pkgs/development/python-modules/jupyter_core/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "jupyter_core";
-  version = "4.4.0";
+  version = "4.5.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ba70754aa680300306c699790128f6fbd8c306ee5927976cbe48adacf240c0b7";
+    sha256 = "2c6e7c1e9f2ac45b5c2ceea5730bc9008d92fe59d0725eac57b04c0edfba24f7";
   };
 
   checkInputs = [ pytest mock glibcLocales ];

pkgs/development/python-modules/nbval/default.nix

@@ -22,15 +22,27 @@ buildPythonPackage rec {
     sha256 = "0g8xl4158ngyhiynrkk72jpawnk4isznbijz0w085g269fps0vp2";
   };
 
-  LC_ALL = "en_US.UTF-8";
+  checkInputs = [
+    pytest
+    matplotlib
+    sympy
+    pytestcov
+  ];
 
   buildInputs = [ glibcLocales ];
-  checkInputs = [ matplotlib sympy pytestcov pytest ];
-  propagatedBuildInputs = [ coverage ipykernel jupyter_client nbformat pytest six ];
+
+  propagatedBuildInputs = [
+    coverage
+    ipykernel
+    jupyter_client
+    nbformat
+    pytest
+    six
+  ];
 
   # ignore impure tests
   checkPhase = ''
-    pytest tests --current-env --ignore tests/test_timeouts.py
+    pytest tests --ignore tests/test_timeouts.py
   '';
 
   meta = with lib; {

pkgs/development/python-modules/numba/default.nix

@@ -13,12 +13,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.44.0";
+  version = "0.45.0";
   pname = "numba";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "56421bfc62f3c7c996ff11d5db7fc410909564e41b55379a82b9188fa4aa22f9";
+    sha256 = "fcea8dc6f9e0f1ddf7bd52a207858539bc14e893c5ee66d8730c3e5b9344c4b3";
   };
 
   NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1";

pkgs/development/python-modules/numpy/default.nix

@@ -16,12 +16,12 @@ let
   };
 in buildPythonPackage rec {
   pname = "numpy";
-  version = "1.16.4";
+  version = "1.17.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "7242be12a58fec245ee9734e625964b97cf7e3f2f7d016603f9e56660ce479c7";
+    sha256 = "951fefe2fb73f84c620bec4e001e80a80ddaa1b84dce244ded7f1e0cbe0ed34a";
   };
 
   nativeBuildInputs = [ gfortran pytest ];
@@ -60,10 +60,9 @@ in buildPythonPackage rec {
     inherit blasImplementation cfg;
   };
 
-  # Disable two tests
-  # - test_f2py: f2py isn't yet on path.
+  # Disable test
   # - test_large_file_support: takes a long time and can cause the machine to run out of disk space
-  NOSE_EXCLUDE="test_f2py,test_large_file_support";
+  NOSE_EXCLUDE="test_large_file_support";
 
   meta = {
     description = "Scientific tools for Python";

pkgs/development/python-modules/pandas/2.nix

@@ -0,0 +1,122 @@
+# Python 2 expression
+
+{ buildPythonPackage
+, fetchPypi
+, python
+, stdenv
+, pytest
+, glibcLocales
+, cython
+, dateutil
+, scipy
+, moto
+, numexpr
+, pytz
+, xlrd
+, bottleneck
+, sqlalchemy
+, lxml
+, html5lib
+, beautifulsoup4
+, hypothesis
+, openpyxl
+, tables
+, xlwt
+, runtimeShell
+, libcxx ? null
+}:
+
+let
+  inherit (stdenv.lib) optional optionals optionalString;
+  inherit (stdenv) isDarwin;
+
+in buildPythonPackage rec {
+  pname = "pandas";
+  version = "0.24.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "18imlm8xbhcbwy4wa957a1fkamrcb0z988z006jpfda3ki09z4ag";
+  };
+
+  checkInputs = [ pytest glibcLocales moto hypothesis ];
+
+  nativeBuildInputs = [ cython ];
+  buildInputs = optional isDarwin libcxx;
+  propagatedBuildInputs = [
+    dateutil
+    scipy
+    numexpr
+    pytz
+    xlrd
+    bottleneck
+    sqlalchemy
+    lxml
+    html5lib
+    beautifulsoup4
+    openpyxl
+    tables
+    xlwt
+  ];
+
+  # For OSX, we need to add a dependency on libcxx, which provides
+  # `complex.h` and other libraries that pandas depends on to build.
+  postPatch = optionalString isDarwin ''
+    cpp_sdk="${libcxx}/include/c++/v1";
+    echo "Adding $cpp_sdk to the setup.py common_include variable"
+    substituteInPlace setup.py \
+      --replace "['pandas/src/klib', 'pandas/src']" \
+                "['pandas/src/klib', 'pandas/src', '$cpp_sdk']"
+  '';
+
+
+  disabledTests = stdenv.lib.concatMapStringsSep " and " (s: "not " + s) ([
+    # since dateutil 0.6.0 the following fails: test_fallback_plural, test_ambiguous_flags, test_ambiguous_compat
+    # was supposed to be solved by https://github.com/dateutil/dateutil/issues/321, but is not the case
+    "test_fallback_plural"
+    "test_ambiguous_flags"
+    "test_ambiguous_compat"
+    # Locale-related
+    "test_names"
+    "test_dt_accessor_datetime_name_accessors"
+    "test_datetime_name_accessors"
+    # Can't import from test folder
+    "test_oo_optimizable"
+    # Disable IO related tests because IO data is no longer distributed
+    "io"
+    # KeyError Timestamp
+    "test_to_excel"
+  ] ++ optionals isDarwin [
+    "test_locale"
+    "test_clipboard"
+  ]);
+
+  doCheck = !stdenv.isAarch64; # upstream doesn't test this architecture
+
+  checkPhase = ''
+    runHook preCheck
+  ''
+  # TODO: Get locale and clipboard support working on darwin.
+  #       Until then we disable the tests.
+  + optionalString isDarwin ''
+    # Fake the impure dependencies pbpaste and pbcopy
+    echo "#!${runtimeShell}" > pbcopy
+    echo "#!${runtimeShell}" > pbpaste
+    chmod a+x pbcopy pbpaste
+    export PATH=$(pwd):$PATH
+  '' + ''
+    LC_ALL="en_US.UTF-8" py.test $out/${python.sitePackages}/pandas --skip-slow --skip-network -k "$disabledTests"
+    runHook postCheck
+  '';
+
+  meta = {
+    # https://github.com/pandas-dev/pandas/issues/14866
+    # pandas devs are no longer testing i686 so safer to assume it's broken
+    broken = stdenv.isi686;
+    homepage = http://pandas.pydata.org/;
+    description = "Python Data Analysis Library";
+    license = stdenv.lib.licenses.bsd3;
+    maintainers = with stdenv.lib.maintainers; [ raskin knedlsepp ];
+    platforms = stdenv.lib.platforms.unix;
+  };
+}

pkgs/development/python-modules/pandas/default.nix

@@ -30,11 +30,11 @@ let
 
 in buildPythonPackage rec {
   pname = "pandas";
-  version = "0.24.2";
+  version = "0.25.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "18imlm8xbhcbwy4wa957a1fkamrcb0z988z006jpfda3ki09z4ag";
+    sha256 = "914341ad2d5b1ea522798efa4016430b66107d05781dbfe7cf05eba8f37df995";
   };
 
   checkInputs = [ pytest glibcLocales moto hypothesis ];

pkgs/development/python-modules/pycurl/default.nix

@@ -11,27 +11,34 @@
 
 buildPythonPackage rec {
   pname = "pycurl";
-  version = "7.43.0.2";
+  version = "7.43.0.3";
   disabled = isPyPy; # https://github.com/pycurl/pycurl/issues/208
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0f0cdfc7a92d4f2a5c44226162434e34f7d6967d3af416a6f1448649c09a25a4";
+    sha256 = "13nsvqhvnmnvfk75s8iynqsgszyv06cjp4drd3psi7zpbh63623g";
   };
 
-  buildInputs = [ curl openssl.out ];
-  nativeBuildInputs = [ curl ];
+  buildInputs = [
+    curl
+    openssl.out
+  ];
 
-  checkInputs = [ bottle pytest nose flaky ];
+  nativeBuildInputs = [
+    curl
+  ];
+
+  checkInputs = [
+    bottle
+    pytest
+    nose
+    flaky
+  ];
 
   checkPhase = ''
-    py.test -k "not ssh_key_cb_test \
-                and not test_libcurl_ssl_gnutls \
-                and not test_libcurl_ssl_nss \
-                and not test_libcurl_ssl_openssl \
-                and not test_libcurl_ssl_unrecognized \
-                and not test_request_with_verifypeer \
-                and not test_ssl_in_static_libs" tests
+    pytest tests -k "not test_ssl_in_static_libs \
+                     and not test_keyfunction \
+                     and not test_keyfunction_bogus_return"
   '';
 
   preConfigure = ''

pkgs/development/python-modules/pyglet/default.nix

@@ -7,7 +7,7 @@
 , pytest
 , glibc
 , gtk2-x11
-, gdk_pixbuf
+, gdk-pixbuf
 }:
 
 buildPythonPackage rec {
@@ -42,7 +42,7 @@ buildPythonPackage rec {
             elif name == 'gdk-x11-2.0':
                 path = '${gtk2-x11}/lib/libgdk-x11-2.0${ext}'
             elif name == 'gdk_pixbuf-2.0':
-                path = '${gdk_pixbuf}/lib/libgdk_pixbuf-2.0${ext}'
+                path = '${gdk-pixbuf}/lib/libgdk_pixbuf-2.0${ext}'
             if path is not None:
                 return ctypes.cdll.LoadLibrary(path)
         raise Exception("Could not load library {}".format(names))

pkgs/development/python-modules/pyopenssl/default.nix

@@ -46,6 +46,8 @@ let
     # These tests, we disable always.
     "test_set_default_verify_paths"
     "test_fallback_default_verify_paths"
+    # https://github.com/pyca/pyopenssl/issues/768
+    "test_wantWriteError"
   ] ++ (
     optionals (hasPrefix "libressl" openssl.meta.name) failingLibresslTests
   ) ++ (

pkgs/development/python-modules/pytest-annotate/default.nix

@@ -14,9 +14,20 @@ buildPythonPackage rec {
     sha256 = "03e4dece2d1aa91666034f1b2e8bb7a7b8c6be11baf3cf2929b26eea5c6e86f3";
   };
 
-  propagatedBuildInputs = [ pyannotate pytest ];
+  buildInputs = [
+    pytest
+  ];
 
-  # not testing for a testing module...
+  propagatedBuildInputs = [
+    pyannotate
+  ];
+
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "pytest>=3.2.0,<4.0.0" "pytest"
+  '';
+
+  # no testing in a testing module...
   doCheck = false;
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/pytest-mock/default.nix

@@ -1,4 +1,12 @@
-{ lib, buildPythonPackage, fetchPypi, fetchpatch, isPy3k, pytest, mock, setuptools_scm }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, fetchpatch
+, isPy3k
+, pytest
+, mock
+, setuptools_scm
+}:
 
 buildPythonPackage rec {
   pname = "pytest-mock";
@@ -10,7 +18,14 @@ buildPythonPackage rec {
   };
 
   propagatedBuildInputs = lib.optional (!isPy3k) mock;
-  nativeBuildInputs = [ setuptools_scm pytest ];
+
+  nativeBuildInputs = [
+   setuptools_scm
+  ];
+
+  checkInputs = [
+    pytest
+  ];
 
   patches = [
     # Fix tests for pytest 4.6. Remove with the next release
@@ -21,7 +36,9 @@ buildPythonPackage rec {
   ];
 
   checkPhase = ''
-    py.test
+    # remove disabled test on next release
+    # https://github.com/pytest-dev/pytest-mock/pull/151
+    pytest -k "not test_detailed_introspection"
   '';
 
   meta = with lib; {

pkgs/development/python-modules/pyyaml/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "PyYAML";
-  version = "5.1";
+  version = "5.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "436bc774ecf7c103814098159fbb84c2715d25980175292c648f2da143909f95";
+    sha256 = "b4bb4d3f5e232425e25dda21c070ce05168a786ac9eda43768ab7f3ac2770955";
   };
 
   # force regeneration using Cython

pkgs/development/python-modules/readme/default.nix

@@ -2,11 +2,7 @@
 , buildPythonPackage
 , fetchPypi
 , pytest
-, six
-, docutils
-, pygments
-, bleach
-, html5lib
+, readme_renderer
 }:
 
 buildPythonPackage rec {
@@ -18,20 +14,27 @@ buildPythonPackage rec {
     sha256 = "32fbe1538a437da160fa4e4477270bfdcd8876e2e364d0d12898302644496231";
   };
 
-  buildInputs = [ pytest ];
-  propagatedBuildInputs = [ six docutils pygments bleach html5lib ];
+  checkInputs = [
+    pytest
+  ];
+
+  propagatedBuildInputs = [
+    readme_renderer
+  ];
 
   checkPhase = ''
-    py.test
+    pytest
   '';
 
-  # Tests fail, possibly broken.
+  # tests are not included with pypi release
+  # package is not readme_renderer
   doCheck = false;
 
   meta = with stdenv.lib; {
     description = "Readme is a library for rendering readme descriptions for Warehouse";
     homepage = "https://github.com/pypa/readme";
     license = licenses.asl20;
+    maintainers = [ maintainers.costrouc ];
   };
 
 }

pkgs/development/python-modules/requests/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "requests";
-  version = "2.21.0";
+  version = "2.22.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "502a824f31acdacb3a35b6690b5fbf0bc41d63a24a45c4004352b0242707598e";
+    sha256 = "11e007a8a2aa0323f5a921e9e6a2d7e4e67d9877e85773fba9ba6419025cbeb4";
   };
 
   nativeBuildInputs = [ pytest ];

pkgs/development/python-modules/statsmodels/default.nix

@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "statsmodels";
-  version = "0.10.0";
+  version = "0.10.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1fhsq3bz5ya54ipa0cb8qgfj7gfgxprv4briig0ly4r11rj23wv5";
+    sha256 = "320659a80f916c2edf9dfbe83512d9004bb562b72eedb7d9374562038697fa10";
   };
 
   checkInputs = with self; [ nose ];

pkgs/development/python-modules/toolz/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec{
   pname = "toolz";
-  version = "0.9.0";
+  version = "0.10.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "929f0a7ea7f61c178bd951bdae93920515d3fbdbafc8e6caf82d752b9b3b31c9";
+    sha256 = "08fdd5ef7c96480ad11c12d472de21acd32359996f69a5259299b540feba4560";
   };
 
   checkInputs = [ nose ];

pkgs/development/python-modules/tqdm/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "tqdm";
-  version = "4.32.1";
+  version = "4.32.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0a860bf2683fdbb4812fe539a6c22ea3f1777843ea985cb8c3807db448a0f7ab";
+    sha256 = "25d4c0ea02a305a688e7e9c2cdc8f862f989ef2a4701ab28ee963295f5b109ab";
   };
 
   buildInputs = [ nose coverage glibcLocales flake8 ];

pkgs/development/python-modules/widgetsnbextension/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "widgetsnbextension";
-  version = "3.4.2";
+  version = "3.5.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fa618be8435447a017fd1bf2c7ae922d0428056cfc7449f7a8641edf76b48265";
+    sha256 = "8c9b4d73e388f2484296be18432d3cc0b8d59de243079a0db16a56c5571e1f86";
   };
 
   propagatedBuildInputs = [ notebook ];

pkgs/development/python-modules/xarray/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "xarray";
-  version = "0.12.2";
+  version = "0.12.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0wlpyzxdhcc043g9sjbrflky7xwdyq487v64i532zb2fpjskd59s";
+    sha256 = "9310e610af988acb57a2627b10025a250bcbe172e66d3750a6dd3b3c5357da56";
   };
 
   checkInputs = [ pytest ];