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Merge pull request #23376 from bcdarwin/ants 

ANTs: init at 2.1.0 (0gyys1lf) and update ITK accordingly
This commit is contained in:
Michael Raskin 2017-03-18 18:42:24 +01:00 committed by GitHub
parent 452cc25e5b f02ac9588f
commit 4d5f33deff
4 changed files with 41 additions and 2 deletions
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4
pkgs/applications/graphics/seg3d/default.nix
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@ -48,4 +48,8 @@ stdenv.mkDerivation {
''; '';
buildInputs = [ cmake wxGTK itk mesa libXft libXext libXi zlib libXmu libuuid ]; buildInputs = [ cmake wxGTK itk mesa libXft libXext libXi zlib libXmu libuuid ];
meta = {
broken = true;
};
} }

30
pkgs/applications/science/biology/ants/default.nix Normal file
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@ -0,0 +1,30 @@
{ stdenv, fetchFromGitHub, cmake, itk, vtk }:
stdenv.mkDerivation rec {
_name = "ANTs";
_version = "2.1.0";
name = "${_name}-${_version}";
src = fetchFromGitHub {
owner = "stnava";
repo = "ANTs";
rev = "4e02aa76621698e3513330dd9e863e22917e14b7";
sha256 = "0gyys1lf69bl3569cskxc8r5llwcr0dsyzvlby5skhfpsyw0dh8r";
};
nativeBuildInputs = [ cmake ];
buildInputs = [ itk vtk ];
cmakeFlags = [ "-DANTS_SUPERBUILD=FALSE" "-DUSE_VTK=TRUE" ];
checkPhase = "ctest";
doCheck = false;
meta = with stdenv.lib; {
homepage = https://github.com/stnava/ANTs;
description = "Advanced normalization toolkit for medical image registration and other processing";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.bsd3;
};
}

7
pkgs/development/libraries/itk/default.nix
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@ -1,4 +1,4 @@
{stdenv, fetchurl, cmake, libX11, libuuid, xz}: { stdenv, fetchurl, cmake, libX11, libuuid, xz, vtk }:
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
name = "itk-4.10.0"; name = "itk-4.10.0";
@ -12,12 +12,15 @@ stdenv.mkDerivation rec {
"-DBUILD_TESTING=OFF" "-DBUILD_TESTING=OFF"
"-DBUILD_EXAMPLES=OFF" "-DBUILD_EXAMPLES=OFF"
"-DBUILD_SHARED_LIBS=ON" "-DBUILD_SHARED_LIBS=ON"
"-DModule_ITKIOMINC=ON"
"-DModule_ITKVtkGlue=ON"
"-DModule_ITKReview=ON"
]; ];
enableParallelBuilding = true; enableParallelBuilding = true;
nativeBuildInputs = [ cmake xz ]; nativeBuildInputs = [ cmake xz ];
buildInputs = [ libX11 libuuid ]; buildInputs = [ libX11 libuuid vtk ];
meta = { meta = {
description = "Insight Segmentation and Registration Toolkit"; description = "Insight Segmentation and Registration Toolkit";

2
pkgs/top-level/all-packages.nix
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@ -17063,6 +17063,8 @@ with pkgs;
alliance = callPackage ../applications/science/electronics/alliance { }; alliance = callPackage ../applications/science/electronics/alliance { };
ants = callPackage ../applications/science/biology/ants { };
archimedes = callPackage ../applications/science/electronics/archimedes { archimedes = callPackage ../applications/science/electronics/archimedes {
stdenv = overrideCC stdenv gcc49; stdenv = overrideCC stdenv gcc49;
}; };