Merge pull request #71222 from NixOS/python-unstable

Python: package set updates primarily for Python 3.8 support

pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py

@@ -116,11 +116,45 @@ SEMVER = {
 }
 
 
+def _determine_latest_version(current_version, target, versions):
+    """Determine latest version, given `target`.
+    """
+    current_version = Version(current_version)
+
+    def _parse_versions(versions):
+        for v in versions:
+            try:
+                yield Version(v)
+            except InvalidVersion:
+                pass
+
+    versions = _parse_versions(versions)
+
+    index = SEMVER[target]
+
+    ceiling = list(current_version[0:index])
+    if len(ceiling) == 0:
+        ceiling = None
+    else:
+        ceiling[-1]+=1
+        ceiling = Version(".".join(map(str, ceiling)))
+
+    # We do not want prereleases
+    versions = SpecifierSet(prereleases=PRERELEASES).filter(versions)
+
+    if ceiling is not None:
+        versions = SpecifierSet(f"<{ceiling}").filter(versions)
+
+    return (max(sorted(versions))).raw_version
+
+
 def _get_latest_version_pypi(package, extension, current_version, target):
     """Get latest version and hash from PyPI."""
     url = "{}/{}/json".format(INDEX, package)
     json = _fetch_page(url)
-    version = json['info']['version']
+
+    versions = json['releases'].keys()
+    version = _determine_latest_version(current_version, target, versions)
 
     try:
         releases = json['releases'][version]
@@ -132,7 +166,6 @@ def _get_latest_version_pypi(package, extension, current_version, target):
             sha256 = release['digests']['sha256']
             break
     else:
-        logging.error("Release not found for extension: {}".format(extension))
         sha256 = None
     return version, sha256
 
@@ -194,6 +227,8 @@ def _determine_extension(text, fetcher):
                 src_format = 'setuptools'
             elif src_format == 'flit':
                 raise ValueError("Don't know how to update a Flit package.")
+            elif src_format == 'other':
+                raise ValueError("Don't know how to update a format='other' package.")
             extension = FORMATS[src_format]
 
     elif fetcher == 'fetchurl':
@@ -326,4 +361,4 @@ def main():
 
 
 if __name__ == '__main__':
-    main()
+    main()

pkgs/development/libraries/poppler/default.nix

@@ -8,7 +8,7 @@
 }:
 
 let # beware: updates often break cups-filters build
-  version = "0.79.0";
+  version = "0.81.0";
   mkFlag = optset: flag: "-DENABLE_${flag}=${if optset then "on" else "off"}";
 in
 stdenv.mkDerivation rec {
@@ -16,19 +16,11 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "${meta.homepage}/poppler-${version}.tar.xz";
-    sha256 = "1j18jlv1q6h21azb939gqjsgcbsh5qcd8dwxdmad54p5ixha91gr";
+    sha256 = "00pykc7nym3xg0wc60awv0i35zwdfyn0igb6jrnb6rsv0c5h4b91";
   };
 
   outputs = [ "out" "dev" ];
 
-  patches = [
-    (fetchpatch {
-      name = "CVE-2019-9959.patch";
-      url = "https://gitlab.freedesktop.org/poppler/poppler/commit/68ef84e5968a4249c2162b839ca6d7975048a557.patch";
-      sha256 = "17a3qs74fnnrhjys23f4aw5y7yfsk5d507jcj4hh1bndqv6dpwg1";
-    })
-  ];
-
   buildInputs = [ libiconv libintl ] ++ lib.optional withData poppler_data;
 
   # TODO: reduce propagation to necessary libs

pkgs/development/python-modules/GitPython/default.nix

@@ -1,12 +1,12 @@
 { lib, buildPythonPackage, fetchPypi, isPy27, substituteAll, git, gitdb2, mock, nose, ddt }:
 
 buildPythonPackage rec {
-  version = "2.1.11";
+  version = "2.1.14";
   pname = "GitPython";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8237dc5bfd6f1366abeee5624111b9d6879393d84745a507de0fda86043b65a8";
+    sha256 = "392f31eaadc19db35a54e3ab7285577fb4a86d96ecee08cf22a573f06633baab";
   };
 
   patches = [

pkgs/development/python-modules/Mako/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "Mako";
-  version = "1.0.12";
+  version = "1.0.14";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0cfa65de3a835e87eeca6ac856b3013aade55f49e32515f65d999f91a2324162";
+    sha256 = "f5a642d8c5699269ab62a68b296ff990767eb120f51e2e8f3d6afb16bdb57f4b";
   };
 
   checkInputs = [ markupsafe nose mock pytest ];

pkgs/development/python-modules/adal/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "adal";
-  version = "1.2.1";
+  version = "1.2.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b6edd095be66561382bdaa59d40b04490e93149fb3b7fa44c1fa5504eed5b8b9";
+    sha256 = "5a7f1e037c6290c6d7609cab33a9e5e988c2fbec5c51d1c4c649ee3faff37eaf";
   };
 
   propagatedBuildInputs =  [ requests pyjwt dateutil ];

pkgs/development/python-modules/aenum/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "aenum";
-  version = "2.1.2";
+  version = "2.1.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a3208e4b28db3a7b232ff69b934aef2ea1bf27286d9978e1e597d46f490e4687";
+    sha256 = "0644e5d19627beaaf01ca1a8349371f9de962eeb63c2b2c28045b2e674975b8c";
   };
 
   # For Python 3, locale has to be set to en_US.UTF-8 for

pkgs/development/python-modules/aiohttp/default.nix

@@ -19,29 +19,41 @@
 , pytest-mock
 , trustme
 , brotlipy
+, freezegun
 }:
 
 buildPythonPackage rec {
   pname = "aiohttp";
-  version = "3.5.4";
+  version = "3.6.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9c4c83f4fa1938377da32bc2d59379025ceeee8e24b89f72fcbccd8ca22dc9bf";
+    sha256 = "09pkw6f1790prnrq0k8cqgnf1qy57ll8lpmc6kld09q7zw4vi6i5";
   };
 
   disabled = pythonOlder "3.5";
 
   checkInputs = [
     pytestrunner pytest gunicorn pytest-timeout async_generator pytest_xdist
-    pytest-mock pytestcov trustme brotlipy
+    pytest-mock pytestcov trustme brotlipy freezegun
   ];
 
   propagatedBuildInputs = [ attrs chardet multidict async-timeout yarl ]
     ++ lib.optionals (pythonOlder "3.7") [ idna-ssl typing-extensions ];
 
+  # disable tests which attempt to do loopback connections
   checkPhase = ''
-    pytest -k "not test__get_valid_log_format_exc and not test_access_logger_atoms"
+    cd tests
+    pytest -k "not get_valid_log_format_exc \
+               and not test_access_logger_atoms \
+               and not aiohttp_request_coroutine \
+               and not server_close_keepalive_connection \
+               and not connector \
+               and not client_disconnect \
+               and not handle_keepalive_on_closed_connection \
+               and not partially_applied_handler \
+               and not middleware" \
+      --ignore=test_connector.py
   '';
 
   meta = with lib; {

pkgs/development/python-modules/aiohue/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "aiohue";
-  version = "1.9.1";
+  version = "1.9.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3c23aed8e82f398b732279f5f7ee7ed00949ff2db7009f7a2dc705f7c2d16783";
+    sha256 = "a7e545ae17658c10f2c5321e40b85426a8c284e5b33b5dfbe9171f9bdf37aa3e";
   };
 
   propagatedBuildInputs = [ aiohttp ];

pkgs/development/python-modules/aioresponses/default.nix

@@ -11,12 +11,12 @@
 
 buildPythonPackage rec {
   pname = "aioresponses";
-  version = "0.6.0";
+  version = "0.6.1";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0ii1jiwb8qa2y8cqa1zqn7mjax9l8bpf16k4clv616mxw1l0bvs6";
+    sha256 = "fab9607d11a2e05050ef766006b8fdd9424e7122c2bd6f34a5376be4c728e242";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/alembic/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "alembic";
-  version = "1.0.10";
+  version = "1.0.11";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "828dcaa922155a2b7166c4f36ec45268944e4055c86499bd14319b4c8c0094b7";
+    sha256 = "cdb7d98bd5cbf65acd38d70b1c05573c432e6473a82f955cdea541b5c153b0cc";
   };
 
   buildInputs = [ pytest pytestcov mock coverage ];

pkgs/development/python-modules/amqp/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "amqp";
-  version = "2.5.1";
+  version = "2.5.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0s2yxnnhhx9hww0n33yn22q6sgnbd6n2nw92050qv2qpc3i1ga8r";
+    sha256 = "77f1aef9410698d20eaeac5b73a87817365f457a507d82edf292e12cbb83b08d";
   };
 
   checkInputs = [ pytest case pytest-sugar ];

pkgs/development/python-modules/annoy/default.nix

@@ -5,12 +5,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.16.0";
+  version = "1.16.2";
   pname = "annoy";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0jnm38kg7aw63mkd5113i3pb2p9fp5cia91jwhyg9sazb45bzpv9";
+    sha256 = "41348e813fe7125eda3e2229a075eba3d065173ba6c5f20c545bb9c2932633fa";
   };
 
   checkInputs = [

pkgs/development/python-modules/ansible-runner/default.nix

@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "ansible-runner";
-  version = "1.4.1";
+  version = "1.4.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1j3jisiy93026ivd28j0c3p2j7ij6zm2k765yjknfx2gg3m5pk14";
+    sha256 = "9db56a69ad5d43fe7656ad8efb4083cb1800ea400f7828af6b20f44c0882404f";
   };
 
   checkInputs = [ pytest mock ];

pkgs/development/python-modules/ansible/default.nix

@@ -38,7 +38,7 @@ buildPythonPackage rec {
   '';
 
   propagatedBuildInputs = [
-    pycrypto paramiko jinja2 pyyaml httplib2 boto
+    pycrypto paramiko jinja2 pyyaml httplib2
     six netaddr dnspython jmespath dopy
   ] ++ lib.optional windowsSupport pywinrm;
 

pkgs/development/python-modules/apprise/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "apprise";
-  version = "0.8.0";
+  version = "0.8.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "02apbzckj158995k9ls0gr1m9hfk7nw3ck0bp7k41srl5wdys72i";
+    sha256 = "7a26fa03c4b83f03f17e8f8fc0b94d5502a12dc2e39b48e93a0ab0fd93151a95";
   };
 
   nativeBuildInputs = [ Babel ];

pkgs/development/python-modules/approvaltests/default.nix

@@ -1,7 +1,7 @@
 { stdenv, buildPythonPackage, fetchFromGitHub, isPy37, pyperclip }:
 
 buildPythonPackage rec {
-  version = "0.2.4";
+  version = "0.2.6";
   pname = "approvaltests";
 
   # no tests included in PyPI tarball
@@ -9,7 +9,7 @@ buildPythonPackage rec {
     owner = "approvals";
     repo = "ApprovalTests.Python";
     rev = version;
-    sha256 = "05lj5i13zpkgw1wdc1v81wj4zqj8bpzqiwycdnwlg08azcy7k7j1";
+    sha256 = "1k1bj8q1qm89a8xm4az6qk4qswwmgxw5jpdjcxmf93zh5hrcy9h9";
   };
 
   propagatedBuildInputs = [ pyperclip ];
@@ -19,16 +19,6 @@ buildPythonPackage rec {
       --replace "pyperclip==1.5.27" "pyperclip>=1.5.27"
   '';
 
-  # Tests fail on Python 3.7
-  # https://github.com/approvals/ApprovalTests.Python/issues/36
-  doCheck = !isPy37;
-
-  # Disable Linux failing test, because tries to use darwin/windows specific reporters
-  preCheck = stdenv.lib.optionalString stdenv.isLinux ''
-    substituteInPlace tests/test_genericdiffreporter.py \
-      --replace "test_find_working_reporter" "_find_working_reporter"
-  '';
-
   meta = with stdenv.lib; {
     description = "Assertion/verification library to aid testing";
     homepage = https://github.com/approvals/ApprovalTests.Python;

pkgs/development/python-modules/arpeggio/default.nix

@@ -2,21 +2,31 @@
 , buildPythonPackage
 , fetchPypi
 , glibcLocales
+, pytestrunner
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "Arpeggio";
-  version = "1.9.0";
+  version = "1.9.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a5258b84f76661d558492fa87e42db634df143685a0e51802d59cae7daad8732";
+    sha256 = "948ce06163a48a72c97f4fe79ad3d1c1330b6fec4f22ece182fb60ef60bd022b";
   };
 
   # Shall not be needed for next release
   LC_ALL = "en_US.UTF-8";
   buildInputs = [ glibcLocales ];
 
+  nativeBuildInputs = [ pytestrunner ];
+
+  checkInputs = [ pytestCheckHook ];
+
+  disabledTests = [ "test_examples" "test_issue_22" ];
+
+  dontUseSetuptoolsCheck = true;
+
   meta = {
     description = "Packrat parser interpreter";
     license = lib.licenses.mit;

pkgs/development/python-modules/astor/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi, pytest }:
+{ stdenv, buildPythonPackage, fetchPypi, isPy27, pytest, fetchpatch }:
 
 buildPythonPackage rec {
   pname = "astor";
@@ -9,6 +9,14 @@ buildPythonPackage rec {
     sha256 = "0qkq5bf13fqcwablg0nk7rx83izxdizysd42n26j5wbingcfx9ip";
   };
 
+  # fix packaging for setuptools>=41.4
+  patches = [
+    ( fetchpatch {
+        url = "https://github.com/berkerpeksag/astor/pull/163/commits/c908d1136cdfb058f5e9d81b4d3687931aa1ebfb.patch";
+        sha256 = "06mrx3qxfjyx9v76kxsj2b7zyqwrwlyd5z1fh77jbb8yl6m0nacd";
+    })
+  ];
+
   # disable tests broken with python3.6: https://github.com/berkerpeksag/astor/issues/89
   checkInputs = [ pytest ];
   checkPhase = ''

pkgs/development/python-modules/astroid/default.nix

@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "astroid";
-  version = "2.2.5";
+  version = "2.3.1";
 
   disabled = pythonOlder "3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1x5c8fiqa18frwwfdsw41lpqsyff3w4lxvjx9d5ccs4zfkhy2q35";
+    sha256 = "b7546ffdedbf7abcfbff93cd1de9e9980b1ef744852689decc5aeada324238c6";
   };
 
   # From astroid/__pkginfo__.py

pkgs/development/python-modules/astropy/default.nix

@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "astropy";
-  version = "3.2.1";
+  version = "3.2.2";
 
   disabled = !isPy3k; # according to setup.py
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "706c0457789c78285e5464a5a336f5f0b058d646d60f4e5f5ba1f7d5bf424b28";
+    sha256 = "8553f4a95e9938a0c7ae520633f7172356824b8eb324dd967fca6baf00ac19bf";
   };
 
   nativeBuildInputs = [ astropy-helpers ];

pkgs/development/python-modules/astroquery/default.nix

@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "astroquery";
-  version = "0.3.9";
+  version = "0.3.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0zw3xp2rfc6h2v569iqsyvzhfnzp7bfjb7jrj61is1hrqw1cqjrb";
+    sha256 = "1ce57a8792c7d5d74206d797d379de6da35d56be433ea5840c41a49f202e2fab";
   };
 
   # Fix tests using conftest.py from HEAD in the upstream GitHub

pkgs/development/python-modules/atomman/default.nix

@@ -13,12 +13,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.2.6";
+  version = "1.2.8";
   pname = "atomman";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "19501bfdf7e66090764a0ccbecf85a128b46333ea232c2137fa4345512b8b502";
+    sha256 = "0ed099fdceca2d733e81afb08d777e8e852a6e53660d6d268f3739b8d323ced9";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/attrs/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "attrs";
-  version = "18.2.0";
+  version = "19.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "10cbf6e27dbce8c30807caf056c8eb50917e0eaafe86347671b57254006c3e69";
+    sha256 = "f7b7ce16570fe9965acd6d30101a28f62fb4a7f9e926b3bbc9b61f8b04247e72";
   };
 
   # macOS needs clang for testing

pkgs/development/python-modules/aws-lambda-builders/default.nix

@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "aws-lambda-builders";
-  version = "0.3.0";
+  version = "0.4.0";
 
   # No tests available in PyPI tarball
   src = fetchFromGitHub {
     owner = "awslabs";
     repo = "aws-lambda-builders";
     rev = "v${version}";
-    sha256 = "1c3r3iz29s68mlmdsxbl65x5zqx25b89d40rir6729ck4gll4dyd";
+    sha256 = "1z2l9qm6mxp90zl64i9j2cmlzn8n7sc8yfpqh14fi9ay887ayjs1";
   };
 
   # Package is not compatible with Python 3.5
@@ -35,7 +35,7 @@ buildPythonPackage rec {
 
   checkPhase = ''
     export PATH=$out/bin:$PATH
-    pytest tests/functional
+    pytest tests/functional -k 'not can_invoke_pip'
   '';
 
   meta = with lib; {

pkgs/development/python-modules/azure-cli-core/default.nix

@@ -33,11 +33,11 @@
 
 buildPythonPackage rec {
   pname = "azure-cli-core";
-  version = "2.0.71";
+  version = "2.0.75";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "01pqdh16l2c9a6b1az9galmm1szvhg7fyf9shq872wanw1xx88dj";
+    sha256 = "6fde38f4448542c0cf7b13201b702c6927180e7294221b8f67e2c834f22ae1bc";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/azure-cli-telemetry/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "azure-cli-telemetry";
-  version = "1.0.3";
+  version = "1.0.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0sf27pcz653h0cnxsg47nndilhqlw9fl019aqbnji2vn967r9rnl";
+    sha256 = "1f239d544d309c29e827982cc20113eb57037dba16db6cdd2e0283e437e0e577";
   };
 
   propagatedBuildInputs = [
@@ -28,10 +28,10 @@ buildPythonPackage rec {
   # Remove overly restrictive version contraints and obsolete namespace setup
   prePatch = ''
     substituteInPlace setup.py \
-      --replace "applicationinsights>=0.11.1,<0.11.8" "applicationinsights" \
+      --replace "applicationinsights>=0.11.1,<0.12" "applicationinsights"
-      --replace "portalocker==1.2.1" "portalocker"
     substituteInPlace setup.cfg \
       --replace "azure-namespace-package = azure-cli-nspkg" ""
+    rm azure_bdist_wheel.py # we'll fix PEP420 namespacing
   '';
 
   # Prevent these __init__'s from violating PEP420, only needed for python2

pkgs/development/python-modules/azure-common/default.nix

@@ -9,14 +9,14 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.1.21";
+  version = "1.1.23";
   pname = "azure-common";
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "25d696d2affbf5fe9b13aebe66271fce545e673e7e1eeaaec2d73599ba639d63";
+    sha256 = "53b1195b8f20943ccc0e71a17849258f7781bc6db1c72edc7d6c055f79bd54e3";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/backports_lzma/default.nix

@@ -9,13 +9,13 @@
 
 if !(pythonOlder "3.3") then null else buildPythonPackage rec {
   pname = "backports.lzma";
-  version = "0.0.13";
+  version = "0.0.14";
 
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "50829db66f0445442f6c796bba0ca62d1f87f54760c4682b6d1489e729a43744";
+    sha256 = "16d8b68e4d3cd4e6c9ddb059850452946da3914c8a8e197a7f2b0954559f2df4";
   };
 
   buildInputs = [ lzma ];

pkgs/development/python-modules/bidict/default.nix

@@ -12,12 +12,12 @@
 
 buildPythonPackage rec {
   pname = "bidict";
-  version = "0.18.2";
+  version = "0.18.3";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0br3ljvd56nqifr1mbwksvl5jjk40pihrrjlyn7hmc40yq6m5bvh";
+    sha256 = "1742a25a9ef1b1ac4000683406879a3e1a6577faa02f31e482e6c84e2e3bf628";
   };
 
   nativeBuildInputs = [ setuptools_scm ];

pkgs/development/python-modules/billiard/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "billiard";
-  version = "3.6.0.0";
+  version = "3.6.1.0";
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "756bf323f250db8bf88462cd042c992ba60d8f5e07fc5636c24ba7d6f4261d84";
+    sha256 = "b8809c74f648dfe69b973c8e660bcec00603758c9db8ba89d7719f88d5f01f26";
   };
 
   checkInputs = [ pytest case psutil ];

pkgs/development/python-modules/blis/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "blis";
-  version = "0.4.0";
+  version = "0.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1khh02z6wryrnrxlx2wrxzhaqsg5hlgypy0643rvi4zcqanvdpym";
+    sha256 = "d69257d317e86f34a7f230a2fd1f021fd2a1b944137f40d8cdbb23bd334cd0c4";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/bootstrapped-pip/default.nix

@@ -13,20 +13,20 @@ let
   };
   setuptools_source = fetchPypi {
     pname = "setuptools";
-    version = "41.2.0";
+    version = "41.4.0";
     format = "wheel";
-    sha256 = "4380abcf2a4ffd1a5ba22d687c6d690dce83b2b51c70e9c6d09f7e8c7e8040dc";
+    sha256 = "8d01f7ee4191d9fdcd9cc5796f75199deccb25b154eba82d44d6a042cf873670";
   };
 
 in stdenv.mkDerivation rec {
   pname = "pip";
-  version = "19.2.3";
+  version = "19.3";
   name = "${python.libPrefix}-bootstrapped-${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
     format = "wheel";
-    sha256 = "340a0ba40fdeb16413914c0fcd8e0b4ebb0bf39a900ec80e11c05d836c05103f";
+    sha256 = "e100a7eccf085f0720b4478d3bb838e1c179b1e128ec01c0403f84e86e0e2dfb";
   };
 
   dontUseSetuptoolsBuild = true;

pkgs/development/python-modules/boto3/default.nix

@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname =  "boto3";
-  version = "1.9.205"; # N.B: if you change this, change botocore too
+  version = "1.9.250"; # N.B: if you change this, change botocore too
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1zxz1d6w3f4ip04bm26xplpxjhblc2vfmqcs5n63a9y1h43mk171";
+    sha256 = "95f70eda4bd6756e297a7c89739571cbc5cd474620142e5cbe19810529d6ec1f";
   };
 
   propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ];

pkgs/development/python-modules/botocore/default.nix

@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.12.205"; # N.B: if you change this, change boto3 and awscli to a matching version
+  version = "1.12.251"; # N.B: if you change this, change boto3 and awscli to a matching version
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "19ls7hdmcaqrrq8przqy05s8chsy8315ic2zg185k6m64pvr0qhd";
+    sha256 = "887a57b3dcfb1d29ae11e504a486cd8dbe1af4f5678980a804dbf02b36d1c4f8";
   };
 
   outputs = [ "out" "dev" ];

pkgs/development/python-modules/bottle/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "bottle";
-  version = "0.12.16";
+  version = "0.12.17";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9c310da61e7df2b6ac257d8a90811899ccb3a9743e77e947101072a2e3186726";
+    sha256 = "e9eaa412a60cc3d42ceb42f58d15864d9ed1b92e9d630b8130c871c5bb16107c";
   };
 
   propagatedBuildInputs = [ setuptools ];

pkgs/development/python-modules/breathe/default.nix

@@ -1,12 +1,12 @@
 { lib, fetchPypi, buildPythonPackage, docutils, six, sphinx, isPy3k }:
 
 buildPythonPackage rec {
-  version = "4.13.0";
+  version = "4.13.1";
   pname = "breathe";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "08xs1cqpvcv7735j19c35br34gbwzfn89rkg12n2yfz4af0x3xfp";
+    sha256 = "c6752345252f48092bf72a450fd9e84367bd5b4af99d86c92047f82c6c2287ab";
   };
 
   propagatedBuildInputs = [ docutils six sphinx ];

pkgs/development/python-modules/buildout-nix/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "zc.buildout";
-  version = "2.13.1";
+  version = "2.13.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3d14d07226963a517295dfad5879d2799e2e3b65b2c61c71b53cb80f5ab11484";
+    sha256 = "5dd4de86dda684c46ef8ee9cc84e335ca7f6275d4363a684de82225270d1e328";
   };
 
   patches = [ ./nix.patch ];

pkgs/development/python-modules/bumps/default.nix

@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "bumps";
-  version = "0.7.12";
+  version = "0.7.13";
 
   propagatedBuildInputs = [six];
 
@@ -12,7 +12,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0a8m56bwyi0gdrf3kgkdw3cajyxlr40qrj1xlh5yn4qqjbz7ym02";
+    sha256 = "fdcf335b800d892edfdbc87fdd539cb45166d8667edbec3dfbb1a3b5c3a35547";
   };
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/can/default.nix

@@ -16,11 +16,11 @@
 
 buildPythonPackage rec {
   pname = "python-can";
-  version = "3.3.1";
+  version = "3.3.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1giv9s6w90lalxsijgnxzynygkckcfyaxnxsldbwv0784vwy1jcd";
+    sha256 = "5fefb5c1e7e7f07faefc02c6eac79f9b58376f007048a04d8e7f325d48ec6b2e";
   };
 
   propagatedBuildInputs = [ wrapt pyserial aenum ] ++ lib.optional (pythonOlder "3.5") typing;

pkgs/development/python-modules/cerberus/default.nix

@@ -11,6 +11,10 @@ buildPythonPackage rec {
 
   checkInputs = [ pytestrunner pytest ];
 
+  checkPhase = ''
+    pytest -k 'not nested_oneofs'
+  '';
+
   meta = with stdenv.lib; {
     homepage = http://python-cerberus.org/;
     description = "Lightweight, extensible schema and data validation tool for Python dictionaries";

pkgs/development/python-modules/cheroot/default.nix

@@ -8,11 +8,11 @@ let inherit (stdenv) lib; in
 
 buildPythonPackage rec {
   pname = "cheroot";
-  version = "6.5.6";
+  version = "6.5.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b824f9961eb447809badeb051820a05770354e2f9ae5c355eecc21f22633c217";
+    sha256 = "427e7e3ce51ad5a6e5cf953252b5782d5dfbeb544c09910634971bc06df6621b";
   };
 
   patches = [ ./tests.patch ];

pkgs/development/python-modules/click-completion/default.nix

@@ -4,12 +4,12 @@
 
 buildPythonPackage rec {
   pname = "click-completion";
-  version = "0.5.1";
+  version = "0.5.2";
   disabled = (!isPy3k);
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1ysn6kzv3fgakn0y06i3cxynd8iaybarrygabk9a0pp2spn2w1vq";
+    sha256 = "5bf816b81367e638a190b6e91b50779007d14301b3f9f3145d68e3cade7bce86";
   };
 
   propagatedBuildInputs = [ click jinja2 shellingham six ];

pkgs/development/python-modules/cmd2/default.nix

@@ -6,11 +6,11 @@
 }:
 buildPythonPackage rec {
   pname = "cmd2";
-  version = "0.9.17";
+  version = "0.9.19";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0sp4m5xg8ms3ikps0c6qd51f9cab4ca9byl865bklm9vxc1adgkp";
+    sha256 = "c81284083d993af18b8fef57d89d854d49d051d4c2c8a8e12d0281e369ac3682";
   };
 
   LC_ALL="en_US.UTF-8";

pkgs/development/python-modules/coloredlogs/default.nix

@@ -19,7 +19,8 @@ buildPythonPackage rec {
   });
 
   checkPhase = ''
-    PATH=$PATH:$out/bin pytest . -k "not test_plain_text_output_format"
+    PATH=$PATH:$out/bin pytest . -k "not test_plain_text_output_format \
+                                     and not test_auto_install"
   '';
   checkInputs = [ pytest mock utillinux ];
 

pkgs/development/python-modules/commonmark/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "commonmark";
-  version = "0.8.1";
+  version = "0.9.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "abcbc854e0eae5deaf52ae5e328501b78b4a0758bf98ac8bb792fce993006084";
+    sha256 = "452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60";
   };
 
   preCheck = ''

pkgs/development/python-modules/configparser/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "configparser";
-  version = "3.7.4";
+  version = "3.7.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "da60d0014fd8c55eb48c1c5354352e363e2d30bbf7057e5e171a468390184c75";
+    sha256 = "9395033080372df999e206387b295946928e2886dd64c5fee7db7ff36c6c6f8e";
   };
 
   # No tests available

pkgs/development/python-modules/coverage/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "coverage";
-  version = "4.5.3";
+  version = "4.5.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9de60893fb447d1e797f6bf08fdf0dbcda0c1e34c1b06c92bd3a363c0ea8c609";
+    sha256 = "e07d9f1a23e9e93ab5c62902833bf3e4b1f65502927379148b6622686223125c";
   };
 
   # No tests in archive

pkgs/development/python-modules/dask-mpi/default.nix

@@ -9,12 +9,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.0.2";
+  version = "1.0.3";
   pname = "dask-mpi";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1apzzh90gl9jx43z0gjmgpniplhvqziafi2l8688a0g01vw7ibjv";
+    sha256 = "e81ca2269eb96f928b2c308aa5eb687e114e5b470924ca8d480fe3bc1b599c6b";
   };
 
   checkInputs = [ pytest requests ];

pkgs/development/python-modules/dask-xgboost/default.nix

@@ -9,12 +9,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.1.5";
+  version = "0.1.7";
   pname = "dask-xgboost";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1860d06965fe68def1c83b9195130a92050fd4bc28bf2be689898a3a74ee1316";
+    sha256 = "c4eb7989e0b4bcab956c5ab5f89c3419016615ad1ca8f6596ca471e402aae43b";
   };
 
   checkInputs = [ pytest scikitlearn ];

pkgs/development/python-modules/dask/default.nix

@@ -15,13 +15,13 @@
 
 buildPythonPackage rec {
   pname = "dask";
-  version = "2.2.0";
+  version = "2.6.0";
 
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0wkiqkckwy7fv6m86cs3m3g6jdikkkw84ki9hiwp60xpk5xngnf0";
+    sha256 = "81c7891f0d2e7ac03d1f7fabf1f639360a1db52c03a7155ba9b08e9ee6280f2b";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/datamodeldict/default.nix

@@ -5,12 +5,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.9.5";
+  version = "0.9.6";
   pname = "DataModelDict";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "afa15c137c09e7d937e31c8956fd8092be0251c9869a6b7c1d0f81c0901bc47d";
+    sha256 = "857d4bf33f0b26ca718bd821fda7502dd6fb15aa09201b1fbdfaf4dfc85b8f6c";
   };
 
   propagatedBuildInputs = [ xmltodict ];

pkgs/development/python-modules/dateparser/default.nix

@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "dateparser";
-  version = "0.7.1";
+  version = "0.7.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "42d51be54e74a8e80a4d76d1fa6e4edd997098fce24ad2d94a2eab5ef247193e";
+    sha256 = "e1eac8ef28de69a554d5fcdb60b172d526d61924b1a40afbbb08df459a36006b";
   };
 
   checkInputs = [ nose mock parameterized six glibcLocales ];

pkgs/development/python-modules/dbus/default.nix

@@ -1,22 +1,24 @@
-{ lib, fetchurl, buildPythonPackage, python, pkgconfig, dbus, dbus-glib, isPyPy
+{ lib, fetchPypi, buildPythonPackage, python, pkgconfig, dbus, dbus-glib, isPyPy
 , ncurses, pygobject3 }:
 
-if isPyPy then throw "dbus-python not supported for interpreter ${python.executable}" else buildPythonPackage rec {
+buildPythonPackage rec {
   pname = "dbus-python";
-  version = "1.2.4";
+  version = "1.2.12";
   format = "other";
 
-  outputs = [ "out" "dev" "doc" ];
+  outputs = [ "out" "dev" ];
 
-  src = fetchurl {
+  src = fetchPypi {
-    url = "https://dbus.freedesktop.org/releases/dbus-python/${pname}-${version}.tar.gz";
+    inherit pname version;
-    sha256 = "1k7rnaqrk7mdkg0k6n2jn3d1mxsl7s3i07g5a8va5yvl3y3xdwg2";
+    sha256 = "0q7jmldv0bxxqnbj63cd7i81vs6y85xys4r0n63z4n2y9wndxm6d";
   };
 
   patches = [
     ./fix-includedir.patch
   ];
 
+  disabled = isPyPy;
+
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [ dbus dbus-glib ]
     # My guess why it's sometimes trying to -lncurses.

pkgs/development/python-modules/debian/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "python-debian";
-  version = "0.1.34";
+  version = "0.1.36";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a02e073214e9f3a371f7ec0ff8b34dd82bd4941194dd69c49ad80b321b9d887e";
+    sha256 = "c953bb0c54e96887badd2324cc66e1887bf2734f301882cd4fe847a844b518a6";
   };
 
   propagatedBuildInputs = [ chardet six ];

pkgs/development/python-modules/deform/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "deform";
-  version = "2.0.7";
+  version = "2.0.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2ff29c32ebe544c0f0a77087e268b2cd9cb4b11fa35af3635d5b42913f88d74a";
+    sha256 = "8936b70c622406eb8c8259c88841f19eb2996dffcf2bac123126ada851da7271";
   };
 
   postPatch = ''

pkgs/development/python-modules/defusedxml/default.nix

@@ -2,10 +2,10 @@
 
 buildPythonPackage rec {
   pname = "defusedxml";
-  version = "0.5.0";
+  version = "0.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1x54n0h8hl92vvwyymx883fbqpqjwn2mc8fb383bcg3z9zwz5mr4";
+    sha256 = "f684034d135af4c6cbb949b8a4d2ed61634515257a67299e5f940fbaa34377f5";
   };
 }

pkgs/development/python-modules/dependency-injector/default.nix

@@ -9,11 +9,11 @@ in
 
 buildPythonPackage rec {
   pname = "dependency-injector";
-  version = "3.14.10";
+  version = "3.14.12";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1c475axh40f8s4n5dqm52qczx9g2g8b8wsy0qvghirk84ikpca5y";
+    sha256 = "c0b593d30a9dcafd71459075fac14ccf52fcefa2094d5062dfc2e174c469dc03";
   };
 
   propagatedBuildInputs = [ six ];

pkgs/development/python-modules/dftfit/default.nix

@@ -21,12 +21,12 @@
 
 buildPythonPackage rec {
   pname = "dftfit";
-  version = "0.5.0";
+  version = "0.5.1";
   disabled = (!isPy3k);
 
   src = fetchPypi {
      inherit pname version;
-     sha256 = "fd9e777157669d004e7c25adce3e7c697234283384c99aa0c23454173a14a7a8";
+     sha256 = "4dcbde48948835dcf2d49d6628c9df5747a8ec505d517e374b8d6c7fe95892df";
   };
 
   buildInputs = [ pytestrunner ];

pkgs/development/python-modules/diff_cover/default.nix

@@ -1,10 +1,23 @@
-{ stdenv, buildPythonPackage, fetchPypi, jinja2, jinja2_pluralize, pygments,
+{ stdenv, buildPythonPackage, fetchPypi
-  six, inflect, mock, nose, coverage, pycodestyle, flake8, pyflakes, git,
+, inflect
-  pylint, pydocstyle, fetchpatch, glibcLocales }:
+, jinja2
+, jinja2_pluralize
+, pygments
+, six
+# test dependencies
+, coverage
+, flake8
+, mock
+, nose
+, pycodestyle
+, pyflakes
+, pylint
+, pytest
+}:
 
 buildPythonPackage rec {
   pname = "diff_cover";
-  version = "1.0.2";
+  version = "2.3.0";
 
   preCheck = ''
     export LC_ALL=en_US.UTF-8;
@@ -12,20 +25,17 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1wbp0kfv2mjxwnq2jlqmwvb71fywwc4x4azxi7ll5dll6nhjyd61";
+    sha256 = "1kfv5icvnljh9c97i3fykh0zlba1zjz0rb3p9x06hdwh25n81915";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "tests-fix.patch";
-      url = "https://github.com/Bachmann1234/diff-cover/commit/85c30959c8ed2aa3848f400095a2418f15bb7777.patch";
-      sha256 = "0xni4syrxww9kdv8495f416vqgfdys4w2hgf5rdi35hy3ybfslh0";
-    })
-  ];
-
   propagatedBuildInputs = [ jinja2 jinja2_pluralize pygments six inflect ];
 
-  checkInputs = [ mock nose coverage pycodestyle flake8 pyflakes pylint pydocstyle git glibcLocales ];
+  checkInputs = [ mock coverage pytest nose pylint pyflakes pycodestyle ];
+
+  # ignore tests which try to write files
+  checkPhase = ''
+    pytest -k 'not added_file_pylint_console and not file_does_not_exist'
+  '';
 
   meta = with stdenv.lib; {
     description = "Automatically find diff lines that need test coverage";

pkgs/development/python-modules/django-cors-headers/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "django-cors-headers";
-  version = "3.1.0";
+  version = "3.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0g1vqhc36ay518vs67kkf6w76ay27dc73w145bpwgp9fky81r6z6";
+    sha256 = "5762ec9c2d59f38c76828dc1d4308baca4bc0d3e1d6f217683e7a24a1c4611a3";
   };
 
   propagatedBuildInputs = [ django ];

pkgs/development/python-modules/django-multiselectfield/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "django-multiselectfield";
-  version = "0.1.8";
+  version = "0.1.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "52483d23aecbf6b502f9e6806e97da9288d5d7f2a3f99f736390763de68c8fd7";
+    sha256 = "54fa3886884cbc5d9c2f523e0e4af2cc3b976bd077718b2b443a5be44eb481ec";
   };
 
   propagatedBuildInputs = [ django ];

pkgs/development/python-modules/django-pglocks/default.nix

@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "django-pglocks";
-  version = "1.0.2";
+  version = "1.0.3";
 
   meta = {
     description = "PostgreSQL locking context managers and functions for Django.";
@@ -12,7 +12,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1ks4k0bk4457wfl3xgzr4v7xb0lxmnkhxwhlp0bbnmzipdafw1cl";
+    sha256 = "daa3323de355b9057d8f37143e2ae8d283925fd25128ab66bb8c700d000111d9";
   };
 
   buildInputs = [ django ];

pkgs/development/python-modules/django-q/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "django-q";
-  version = "1.0.1";
+  version = "1.0.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "17mqxiacsp2yszak6j48fm7vx0w44pcg86flc63r9y5yhx490n5r";
+    sha256 = "70081f58c6d78748d8664acbf028fb641687c36df38d3d31e9f1b6fcfac1079f";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/django/2_1.nix

@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "Django";
-  version = "2.1.11";
+  version = "2.1.13";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1m9bs78sh91slsjxkhxgkg715gbsgph9ky7d74czs0z2mhg86h8s";
+    sha256 = "7a28a4eb0167eba491ccfafd7006843b5cdd26d8c93b955a74c2ea74f94efc2c";
   };
 
   patches = stdenv.lib.optionals withGdal [

pkgs/development/python-modules/django/2_2.nix

@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "Django";
-  version = "2.2.5";
+  version = "2.2.6";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0mpxmckd1mah0yrp6n8vjk6mq7hxf6d5xcbk6rcmi6z572h0mdyy";
+    sha256 = "a8ca1033acac9f33995eb2209a6bf18a4681c3e5269a878e9a7e0b7384ed1ca3";
   };
 
   patches = stdenv.lib.optional withGdal

pkgs/development/python-modules/djangoql/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "djangoql";
-  version = "0.13.0";
+  version = "0.13.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0hkg0zh8w6f4krbrv4nl66blrx48yixgc8ikf915415ghlqfsbjj";
+    sha256 = "366293d7d4e416f9f7d6e2b98775c2129222fbb4dc660f3e6c7b9e35a3cf3fce";
   };
 
   propagatedBuildInputs = [ ply ];

pkgs/development/python-modules/dkimpy/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "dkimpy";
-  version = "0.9.3";
+  version = "0.9.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1rnnax2blmwk6404yrnhswp50xbp2h192rd2l6mra5lh3rg36zvd";
+    sha256 = "6bf47aa71bc466f5d6a201042317fb415fbc45f3cae4f5dbe1e337e235549ff2";
 };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/docker/default.nix

@@ -9,19 +9,19 @@
 }:
 
 buildPythonPackage rec {
-  version = "4.0.2";
   pname = "docker";
+  version = "4.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0r1i46h8x1vfvadayyvmh5hc6mpzgv3vvp6pv4g1wavamya2wnyc";
+    sha256 = "1hdgics03fz2fbhalzys7a7kjj54jnl5a37h6lzdgym41gkwa1kf";
   };
 
   propagatedBuildInputs = [
-    six
-    requests
-    websocket_client
     paramiko
+    requests
+    six
+    websocket_client
   ] ++ stdenv.lib.optional isPy27 backports_ssl_match_hostname;
 
   checkInputs = [
@@ -36,7 +36,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "An API client for docker written in Python";
-    homepage = https://github.com/docker/docker-py;
+    homepage = "https://github.com/docker/docker-py";
     license = licenses.asl20;
     maintainers = with maintainers; [ jonringer ];
   };

pkgs/development/python-modules/docutils/default.nix

@@ -1,18 +1,19 @@
 { stdenv
 , lib
-, fetchurl
+, fetchPypi
 , buildPythonPackage
 , isPy3k
+, isPy38
 , python
 }:
 
 buildPythonPackage rec {
   pname = "docutils";
-  version = "0.14";
+  version = "0.15.2";
 
-  src = fetchurl {
+  src = fetchPypi {
-    url = "mirror://sourceforge/docutils/${pname}.tar.gz";
+    inherit pname version;
-    sha256 = "0x22fs3pdmr42kvz6c654756wja305qv6cx1zbhwlagvxgr4xrji";
+    sha256 = "168s5v7bff5ar9jspr6wn823q1sbn0jhnbp9clk41nl8j09fmbm2";
   };
 
   # Only Darwin needs LANG, but we could set it in general.
@@ -30,6 +31,10 @@ buildPythonPackage rec {
     done
   '';
 
+  # Four tests are broken with 3.8.
+  # test_writers.test_odt.DocutilsOdtTestCase
+  doCheck = !isPy38;
+
   meta = {
     description = "Docutils -- Python Documentation Utilities";
     homepage = http://docutils.sourceforge.net/;

pkgs/development/python-modules/drms/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "drms";
-  version = "0.5.6";
+  version = "0.5.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "95cac0e14532893a44eeab8e329ddb76150e6848153d8cb1e4e08ba55569e6af";
+    sha256 = "ab3ec6d072b1980f77dadf3b2cb0fe56c648eaf927ea381f606b4db66d4cbff2";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/dulwich/default.nix

@@ -4,12 +4,12 @@
 , git, glibcLocales }:
 
 buildPythonPackage rec {
-  version = "0.19.11";
+  version = "0.19.13";
   pname = "dulwich";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "afbe070f6899357e33f63f3f3696e601731fef66c64a489dea1bc9f539f4a725";
+    sha256 = "aa628449c5f594a9a282f4d9e5993fef65481ef5e3b9b6c52ff31200f8f5dc95";
   };
 
   LC_ALL = "en_US.UTF-8";

pkgs/development/python-modules/ecdsa/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "ecdsa";
-  version = "0.13.2";
+  version = "0.13.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5c034ffa23413ac923541ceb3ac14ec15a0d2530690413bff58c12b80e56d884";
+    sha256 = "163c80b064a763ea733870feb96f9dd9b92216cfcacd374837af18e4e8ec3d4d";
   };
 
   # Only needed for tests

pkgs/development/python-modules/elasticsearch/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage (rec {
   pname = "elasticsearch";
-  version = "7.0.2";
+  version = "7.0.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cbc73831c63fa2824538df76fcb2c4be007b43dbd9e7788ae70ea6d24109925b";
+    sha256 = "693935914d59a517dfffdaab547ff906712a386d9e25027517464960221cbd4c";
   };
 
   # Check is disabled because running them destroy the content of the local cluster!

pkgs/development/python-modules/enum-compat/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "enum-compat";
-  version = "0.0.2";
+  version = "0.0.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "14j1i963jic2vncbf9k5nq1vvv8pw2zsg7yvwhm7d9c6h7qyz74k";
+    sha256 = "3677daabed56a6f724451d585662253d8fb4e5569845aafa8bb0da36b1a8751e";
   };
 
   propagatedBuildInputs = [ enum34 ];

pkgs/development/python-modules/eve/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "Eve";
-  version = "0.9";
+  version = "0.9.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "18shfaxa1vqshnyiqx3jqsri2wxz9ibip3mdxaz8pljmk734r4b1";
+    sha256 = "0191ed42ef85d747758bba29df5ff1e296b8152fefddb2f75c3d778c2e6fb9d3";
   };
 
   propagatedBuildInputs = [
@@ -19,6 +19,11 @@ buildPythonPackage rec {
     werkzeug
   ];
 
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "werkzeug==0.15.4" "werkzeug"
+  '';
+
   # tests call a running mongodb instance
   doCheck = false;
 

pkgs/development/python-modules/execnet/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "execnet";
-  version = "1.7.0";
+  version = "1.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3839f3c1e9270926e7b3d9b0a52a57be89c302a3826a2b19c8d6e6c3d2b506d2";
+    sha256 = "cacb9df31c9680ec5f95553976c4da484d407e85e41c83cb812aa014f0eddc50";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/factory_boy/default.nix

@@ -1,8 +1,10 @@
-{ stdenv
+{ lib
 , buildPythonPackage
 , fetchPypi
+, isPy27
 , faker
 , python
+, ipaddress
 }:
 
 buildPythonPackage rec {
@@ -14,16 +16,12 @@ buildPythonPackage rec {
     sha256 = "0w53hjgag6ad5i2vmrys8ysk54agsqvgbjy9lg8g0d8pi9h8vx7s";
   };
 
-  propagatedBuildInputs = [ faker ];
+  propagatedBuildInputs = [ faker ] ++ lib.optionals isPy27 [ ipaddress ];
 
   # tests not included with pypi release
   doCheck = false;
 
-  checkPhase = ''
+  meta = with lib; {
-    ${python.interpreter} -m unittest
-  '';
-
-  meta = with stdenv.lib; {
     description = "A Python package to create factories for complex objects";
     homepage    = https://github.com/rbarrois/factory_boy;
     license     = licenses.mit;

pkgs/development/python-modules/faker/default.nix

@@ -10,26 +10,28 @@
   , pytestrunner
   , random2
   , ukpostcodeparser
+  , validators
 }:
 
 assert pythonOlder "3.3" -> ipaddress != null;
 
 buildPythonPackage rec {
   pname = "Faker";
-  version = "1.0.7";
+  version = "2.0.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1jins8jlqyxjwx6i2h2jknwwfpi0bpz1qggvw6xnbxl0g9spyiv0";
+    sha256 = "19zdcdmc11syjbmnbq98yny3dwb5jqw8cxcbq9g2scwzc5f7b32y";
   };
 
-  buildInputs = [ pytestrunner ];
+  nativeBuildInputs = [ pytestrunner ];
   checkInputs = [
     email_validator
     freezegun
     pytest
     random2
     ukpostcodeparser
+    validators
   ]
   ++ lib.optionals (pythonOlder "3.3") [ mock ]
   ++ lib.optionals (pythonOlder "3.0") [ more-itertools ];
@@ -38,18 +40,10 @@ buildPythonPackage rec {
     dateutil
     six
     text-unidecode
-  ] ++ lib.optional (pythonOlder "3.3") ipaddress;
+  ];
 
   postPatch = ''
     substituteInPlace setup.py --replace "pytest>=3.8.0,<3.9" "pytest"
-
-    # see https://github.com/joke2k/faker/pull/911, fine since we pin correct
-    # versions for python2
-    substituteInPlace setup.py --replace "more-itertools<6.0.0" "more-itertools"
-
-    # https://github.com/joke2k/faker/issues/970
-    substituteInPlace setup.py --replace "random2==1.0.1" "random2>=1.0.1"
-    substituteInPlace setup.py --replace "freezegun==0.3.11" "freezegun>=0.3.11"
   '';
 
   meta = with lib; {

pkgs/development/python-modules/flake8-debugger/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "flake8-debugger";
-  version = "3.1.0";
+  version = "3.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "be4fb88de3ee8f6dd5053a2d347e2c0a2b54bab6733a2280bb20ebd3c4ca1d97";
+    sha256 = "103d86d2ecb95f8aab90f90603446f4e2bb60e01f1593e4fec410074dedabac6";
   };
 
   nativeBuildInputs = [ pytestrunner ];

pkgs/development/python-modules/flake8/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "flake8";
-  version = "3.7.7";
+  version = "3.7.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "859996073f341f2670741b51ec1e67a01da142831aa1fdc6242dbf88dffbe661";
+    sha256 = "19241c1cbc971b9962473e4438a2ca19749a7dd002dd1a946eaba171b4114548";
   };
 
   checkInputs = [ pytest mock pytestrunner ];

pkgs/development/python-modules/flask-sqlalchemy/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Flask-SQLAlchemy";
-  version = "2.4.0";
+  version = "2.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0nnllf0ddbh9jlhngnyjj98lbxgxr1csaplllx0caw98syq0k5hc";
+    sha256 = "6974785d913666587949f7c2946f7001e4fa2cb2d19f4e69ead02e4b8f50b33d";
   };
 
   propagatedBuildInputs = [ flask sqlalchemy ];

pkgs/development/python-modules/fs-s3fs/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "fs-s3fs";
-  version = "1.1.0";
+  version = "1.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "49bfa4572bb11e37324dd43be935ab99376259eff652365aef0e4a747bb11418";
+    sha256 = "b57f8c7664460ff7b451b4b44ca2ea9623a374d74e1284c2d5e6df499dc7976c";
   };
 
   propagatedBuildInputs = [ fs six boto3 ];

pkgs/development/python-modules/fs/default.nix

@@ -19,11 +19,11 @@
 
 buildPythonPackage rec {
   pname = "fs";
-  version = "2.4.8";
+  version = "2.4.11";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5e19251e939b10d50e4b58b0cf2862851794abcf4aa4387b67c69dd61e97b3dc";
+    sha256 = "cc99d476b500f993df8ef697b96dc70928ca2946a455c396a566efe021126767";
   };
 
   buildInputs = [ glibcLocales ];

pkgs/development/python-modules/fsspec/default.nix

@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "fsspec";
-  version = "0.4.1";
+  version = "0.4.5";
 
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0fvm1kdnnbf0pppv23mlfdqh220gcldmv72w2rdxp6ks1rcphzg3";
+    sha256 = "824e406f5628cfde927ac945acf4ff70bc712b8bd204d7b99fe127993254db70";
   };
 
   # no tests

pkgs/development/python-modules/gensim/default.nix

@@ -11,12 +11,12 @@
 
 buildPythonPackage rec {
   pname = "gensim";
-  version = "3.8.0";
+  version = "3.8.1";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0rjpmxcd4hphq41y7frg6by6gwjjmrdbnim8jvx951ps5gzyfpgc";
+    sha256 = "33277fc0a8d7b0c7ce70fcc74bb82ad39f944c009b334856c6e86bf552b1dfdc";
   };
 
   propagatedBuildInputs = [ smart_open numpy six scipy ];

pkgs/development/python-modules/gitdb2/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "gitdb2";
-  version = "2.0.5";
+  version = "2.0.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "83361131a1836661a155172932a13c08bda2db3674e4caa32368aa6eb02f38c2";
+    sha256 = "1b6df1433567a51a4a9c1a5a0de977aa351a405cc56d7d35f3388bad1f630350";
   };
 
   propagatedBuildInputs = [ smmap2 ];

pkgs/development/python-modules/google-auth-oauthlib/default.nix

@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "google-auth-oauthlib";
-  version = "0.4.0";
+  version = "0.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1fl3w23c93hlgqf0l57cdy17wmvyhrv3bh133ksd2h490ir012va";
+    sha256 = "88d2cd115e3391eb85e1243ac6902e76e77c5fe438b7276b297fbe68015458dd";
   };
 
   checkInputs = [

pkgs/development/python-modules/google_api_core/default.nix

@@ -1,9 +1,10 @@
-{ lib, buildPythonPackage, fetchPypi, pythonOlder
+{ lib, buildPythonPackage, fetchPypi, pythonOlder, isPy27
 , google_auth, protobuf, googleapis_common_protos, requests, grpcio, futures, mock, pytest }:
 
 buildPythonPackage rec {
   pname = "google-api-core";
   version = "1.7.0";
+  disabled = isPy27; # google namespace no longer works on python2
 
   src = fetchPypi {
     inherit pname version;

pkgs/development/python-modules/google_cloud_bigquery/default.nix

@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-bigquery";
-  version = "1.9.0";
+  version = "1.9.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "169ffdb1b677f69f1f9d032bd38f724aed73e0565153ac17199472c083a3852f";
+    sha256 = "aacba434c54b1ecc83527d6fa06ffc0938a7af109e292ed1f2cfd56d567a0a29";
   };
 
   checkInputs = [ pytest mock ipython ];

pkgs/development/python-modules/google_cloud_storage/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-storage";
-  version = "1.15.1";
+  version = "1.15.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8032e576e2f91a1d3de2355118040c3bcd9916e0453a6b3f64c1b42ed151690a";
+    sha256 = "23e3d09f44f86128b754518c81492fac673ea39f7230356c126140f877c231c8";
   };
 
   checkInputs = [ pytest mock ];

pkgs/development/python-modules/google_resumable_media/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "google-resumable-media";
-  version = "0.3.2";
+  version = "0.3.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3e38923493ca0d7de0ad91c31acfefc393c78586db89364e91cb4f11990e51ba";
+    sha256 = "49493999cf046b5a02f648e201f0c2fc718c5969c53326b4d2c0693b01bdc8bb";
   };
 
   checkInputs = [ pytest mock ];

pkgs/development/python-modules/green/default.nix

@@ -1,18 +1,31 @@
-{ lib, buildPythonPackage, fetchPypi, isPy3k, colorama, coverage, termstyle, unidecode, mock, backports_shutil_get_terminal_size }:
+{ lib, buildPythonPackage, fetchPypi, isPy3k
+, colorama
+, coverage
+, termstyle
+, lxml
+, unidecode
+, mock
+, backports_shutil_get_terminal_size
+}:
 
 buildPythonPackage rec {
   pname = "green";
-  version = "2.13.1";
+  version = "3.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ea6e2699a2e58df834d2c845fb2b076c12d4835daecfcb658c6bd5583ebf4b7d";
+    sha256 = "17cfgq0s02p5cjrsvcicqxiq6kflahjsd9pm03f054x7lpvqi5cv";
   };
 
   propagatedBuildInputs = [
-    colorama coverage termstyle unidecode
+    colorama coverage termstyle unidecode lxml
   ] ++ lib.optionals (!isPy3k) [ mock backports_shutil_get_terminal_size ];
 
+  # let green run it's own test suite
+  checkPhase = ''
+    $out/bin/green green
+  '';
+
   meta = with lib; {
     description = "Python test runner";
     homepage = https://github.com/CleanCut/green;

pkgs/development/python-modules/grpcio-tools/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "grpcio-tools";
-  version = "1.23.0";
+  version = "1.23.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cbc35031ec2b29af36947d085a7fbbcd8b79b84d563adf6156103d82565f78db";
+    sha256 = "c2f5306153dee33bc04212802c898cf79539917e31cf07516f31c2943bea2160";
   };
 
   enableParallelBuilding = true;

pkgs/development/python-modules/guessit/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "guessit";
-  version = "3.0.4";
+  version = "3.0.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1h9f4car26mkck360dxaf9ccdff3inbvpqyz4la2w3zjsz03x01p";
+    sha256 = "3559c2f37575b048c3d8723cc7a8eedb83b6c411d1be0d64e8b54f4b90138ca2";
   };
 
   # Tests require more packages.

pkgs/development/python-modules/gym/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "gym";
-  version = "0.12.5";
+  version = "0.12.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "027422f59b662748eae3420b804e35bbf953f62d40cd96d2de9f842c08de822e";
+    sha256 = "90f53ec8291063abb4654eddeaac2a3a23152438a38c39830d3a3f3fc6a7ca59";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/hdbscan/default.nix

@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "hdbscan";
-  version = "0.8.22";
+  version = "0.8.23";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5cfdc25375123eb9a72363449979141cc928c1953f220f0f81d7baabcaccec2d";
+    sha256 = "ff60c66591452ceb6bdb7592c560a1ebc7e128a02dd3880e048861f7fea7f78d";
   };
 
   checkInputs = [ nose ];

pkgs/development/python-modules/heapdict/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "HeapDict";
-  version = "1.0.0";
+  version = "1.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0nhvxyjq6fp6zd7jzmk5x4fg6xhakqx9lhkp5yadzkqn0rlf7ja0";
+    sha256 = "8495f57b3e03d8e46d5f1b2cc62ca881aca392fd5cc048dc0aa2e1a6d23ecdb6";
   };
 
   doCheck = !isPy3k;

pkgs/development/python-modules/hiro/default.nix

@@ -1,11 +1,11 @@
 { stdenv, buildPythonPackage, fetchPypi, six, mock }:
 buildPythonPackage rec {
   pname = "hiro";
-  version = "0.5";
+  version = "0.5.1";
   src = fetchPypi {
     inherit pname version;
 
-    sha256 = "57d9dac63077f24c3d0132c02ac5c71e4bd1d79bdac30dccad4c83fadd49fa1c";
+    sha256 = "d10e3b7f27b36673b4fa1283cd38d610326ba1ff1291260d0275152f15ae4bc7";
   };
 
   propagatedBuildInputs = [ six mock ];

pkgs/development/python-modules/holoviews/default.nix

@@ -15,11 +15,11 @@
 
 buildPythonPackage rec {
   pname = "holoviews";
-  version = "1.12.5";
+  version = "1.12.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "15cay2fnhwqr42s4hiq37b8q87sir5k59p14g96mvg5p0gjnhg3w";
+    sha256 = "4f6ad184fb6136e5ee37a74b5276825fc3d5fce5033ff3c8db8831ec11ea2e75";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/hopcroftkarp/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "hopcroftkarp";
-  version = "1.2.4";
+  version = "1.2.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cc6fc7ad348bbe5c9451f8116845c46ae26290c92b2dd14690aae2d55ba5e3a6";
+    sha256 = "28a7887db81ad995ccd36a1b5164a4c542b16d2781e8c49334dc9d141968c0e7";
   };
 
   # tests fail due to bad package name