R: unmark edgeR and limma as broken
This commit is contained in:
Justin Bedo
parent
4bb8727284
commit
4c2d75f58c
@ -801,272 +801,6 @@ let
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"AnthropMMD" # depends on broken package euroMix
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"AnthropMMD" # depends on broken package euroMix
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"ilc" # depends on broken package demography
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"ilc" # depends on broken package demography
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"demography" # broken build
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"demography" # broken build
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"webbioc" # depends on broken package limma
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"davidTiling" # depends on broken package limma
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"tilingArray" # depends on broken package limma
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"NAPPA" # depends on broken package limma
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"NanoStringNorm" # depends on broken package limma
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"synapterdata" # depends on broken package limma
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"synapter" # depends on broken package limma
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"RforProteomics" # depends on broken package limma
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"pRolocdata" # depends on broken package limma
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"ProCoNA" # depends on broken package limma
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"Pbase" # depends on broken package limma
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"MSnID" # depends on broken package limma
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"msmsEDA" # depends on broken package limma
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"MSnbase" # depends on broken package limma
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"staRank" # depends on broken package limma
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"phenoDist" # depends on broken package limma
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"imageHTS" # depends on broken package limma
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"Mulder2012" # depends on broken package limma
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"HTSanalyzeR" # depends on broken package limma
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"gespeR" # depends on broken package limma
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"cellHTS2" # depends on broken package limma
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"affyPara" # depends on broken package limma
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"vsn" # depends on broken package limma
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"ttScreening" # depends on broken package limma
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"metaX" # depends on broken package limma
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"SSPA" # depends on broken package limma
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"SQDA" # depends on broken package limma
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"ADaCGH2" # depends on broken package limma
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"snapCGH" # depends on broken package limma
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"SafeQuant" # depends on broken package limma
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"RTopper" # depends on broken package limma
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"RTCGAToolbox" # depends on broken package limma
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"RPPanalyzer" # depends on broken package limma
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"Rnits" # depends on broken package limma
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"RNAinteractMAPK" # depends on broken package limma
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"RNAinteract" # depends on broken package limma
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"SimBindProfiles" # depends on broken package limma
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"ccTutorial" # depends on broken package limma
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"Ringo" # depends on broken package limma
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"rCGH" # depends on broken package limma
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"qusage" # depends on broken package limma
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"qpcrNorm" # depends on broken package limma
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"prot2D" # depends on broken package limma
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"polyester" # depends on broken package limma
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"plmDE" # depends on broken package limma
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"phenoTest" # depends on broken package limma
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"RANKS" # depends on broken package limma
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"PerfMeas" # depends on broken package limma
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"pepStat" # depends on broken package limma
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"PECA" # depends on broken package limma
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"PADOG" # depends on broken package limma
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"OGSA" # depends on broken package limma
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"nethet" # depends on broken package limma
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"lpNet" # depends on broken package limma
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"nem" # depends on broken package limma
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"monocle" # depends on broken package limma
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"MmPalateMiRNA" # depends on broken package limma
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"miRtest" # depends on broken package limma
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"miRLAB" # depends on broken package limma
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"mGSZ" # depends on broken package limma
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"MAMA" # depends on broken package limma
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"metaMA" # depends on broken package limma
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"msd16s" # depends on broken package limma
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"metagenomeSeq" # depends on broken package limma
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"metabolomics" # depends on broken package limma
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"maSigPro" # depends on broken package limma
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"timecourse" # depends on broken package limma
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"stepNorm" # depends on broken package limma
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"RBM" # depends on broken package limma
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"saps" # depends on broken package limma
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"piano" # depends on broken package limma
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"OLINgui" # depends on broken package limma
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"OLIN" # depends on broken package limma
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"nnNorm" # depends on broken package limma
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"ListerEtAlBSseq" # depends on broken package limma
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"compEpiTools" # depends on broken package limma
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"methylPipe" # depends on broken package limma
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"dyebiasexamples" # depends on broken package limma
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"dyebias" # depends on broken package limma
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"CluMix" # depends on broken package limma
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"HCsnip" # depends on broken package limma
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"sigaR" # depends on broken package limma
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"plrs" # depends on broken package limma
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"CGHregions" # depends on broken package limma
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"QDNAseq_mm10" # depends on broken package limma
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"QDNAseq_hg19" # depends on broken package limma
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"QDNAseq" # depends on broken package limma
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"GeneBreak" # depends on broken package limma
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"focalCall" # depends on broken package limma
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"CGHnormaliter" # depends on broken package limma
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"CGHcall" # depends on broken package limma
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"CGHbase" # depends on broken package limma
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"beta7" # depends on broken package limma
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"marray" # depends on broken package limma
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"LVSmiRNA" # depends on broken package limma
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"lmdme" # depends on broken package limma
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"limmaGUI" # depends on broken package limma
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"InPAS" # depends on broken package limma
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"iChip" # depends on broken package limma
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"unifiedWMWqPCR" # depends on broken package limma
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"nondetects" # depends on broken package limma
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"HTqPCR" # depends on broken package limma
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"HD2013SGI" # depends on broken package limma
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"vtpnet" # depends on broken package limma
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"gwascat" # depends on broken package limma
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"gQTLstats" # depends on broken package limma
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"GOsummaries" # depends on broken package limma
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"yri1kgv" # depends on broken package limma
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"hmyriB36" # depends on broken package limma
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"cheung2010" # depends on broken package limma
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"GGtools" # depends on broken package limma
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"GGdata" # depends on broken package limma
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"encoDnaseI" # depends on broken package limma
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"dsQTL" # depends on broken package limma
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"ceuhm3" # depends on broken package limma
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"ceu1kgv" # depends on broken package limma
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"ceu1kg" # depends on broken package limma
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"GGBase" # depends on broken package limma
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"GeneSelector" # depends on broken package limma
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"GeneSelectMMD" # depends on broken package limma
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"gCMAPWeb" # depends on broken package limma
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"gCMAP" # depends on broken package limma
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"flowBin" # depends on broken package limma
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"Fletcher2013a" # depends on broken package limma
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"FEM" # depends on broken package limma
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"explorase" # depends on broken package limma
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"ExiMiR" # depends on broken package limma
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"tweeDEseq" # depends on broken package limma
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"tRanslatome" # depends on broken package limma
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"ToPASeq" # depends on broken package limma
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"timeSeq" # depends on broken package limma
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"TCGAbiolinks" # depends on broken package limma
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"TCC" # depends on broken package limma
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"systemPipeR" # depends on broken package limma
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"STATegRa" # depends on broken package limma
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"ssizeRNA" # depends on broken package limma
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"RUVSeq" # depends on broken package limma
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"RnaSeqSampleSizeData" # depends on broken package limma
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"RnaSeqSampleSize" # depends on broken package limma
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"rnaSeqMap" # depends on broken package limma
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"ReportingTools" # depends on broken package limma
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"QuasiSeq" # depends on broken package limma
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"PROPER" # depends on broken package limma
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"myTAI" # depends on broken package limma
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"msmsTests" # depends on broken package limma
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"methylMnM" # depends on broken package limma
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"metaseqR" # depends on broken package limma
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"MEDIPS" # depends on broken package limma
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"manta" # depends on broken package limma
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"HTSFilter" # depends on broken package limma
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"HTSCluster" # depends on broken package limma
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"GSAgm" # depends on broken package limma
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"fdrDiscreteNull" # depends on broken package limma
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"erccdashboard" # depends on broken package limma
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"EnrichmentBrowser" # depends on broken package limma
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"edgeRun" # depends on broken package limma
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"EDDA" # depends on broken package limma
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"RnaSeqTutorial" # depends on broken package limma
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"easyRNASeq" # depends on broken package limma
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"DEGreport" # depends on broken package limma
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"Imetagene" # depends on broken package limma
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"metagene" # depends on broken package limma
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"DBChIP" # depends on broken package limma
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"babel" # depends on broken package limma
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"apmsWAPP" # depends on broken package limma
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"ampliQueso" # depends on broken package limma
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"edgeR" # depends on broken package limma
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"MMDiff" # depends on broken package limma
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"ChIPQC" # depends on broken package limma
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"DiffBind" # depends on broken package limma
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"DCGL" # depends on broken package limma
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"Prostar" # depends on broken package limma
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"DAPAR" # depends on broken package limma
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"DAAGbio" # depends on broken package limma
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"csaw" # depends on broken package limma
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"cp4p" # depends on broken package limma
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"coRNAi" # depends on broken package limma
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"Cormotif" # depends on broken package limma
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"CORM" # depends on broken package limma
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"TurboNorm" # depends on broken package limma
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"maigesPack" # depends on broken package limma
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"convert" # depends on broken package limma
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"compcodeR" # depends on broken package limma
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"codelink" # depends on broken package limma
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"clippda" # depends on broken package limma
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"REDseq" # depends on broken package limma
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"GUIDEseq" # depends on broken package limma
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"FunciSNP" # depends on broken package limma
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"ChIPpeakAnno" # depends on broken package limma
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"ChIPComp" # depends on broken package limma
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"ChimpHumanBrainData" # depends on broken package limma
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"charmData" # depends on broken package limma
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"charm" # depends on broken package limma
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"cghMCR" # depends on broken package limma
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"CCl4" # depends on broken package limma
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"casper" # depends on broken package limma
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"CancerMutationAnalysis" # depends on broken package limma
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"CALIB" # depends on broken package limma
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"quantro" # depends on broken package limma
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"RnBeads" # depends on broken package limma
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"mvoutData" # depends on broken package limma
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"MineICA" # depends on broken package limma
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"methyAnalysis" # depends on broken package limma
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"MAQCsubsetILM" # depends on broken package limma
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"MAQCsubset" # depends on broken package limma
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"lumiRatIDMapping" # depends on broken package limma
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"lumiMouseIDMapping" # depends on broken package limma
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"lumiHumanIDMapping" # depends on broken package limma
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"lumiBarnes" # depends on broken package limma
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"iCheck" # depends on broken package limma
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"ffpeExampleData" # depends on broken package limma
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"arrayMvout" # depends on broken package limma
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"lumi" # depends on broken package limma
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"ffpe" # depends on broken package limma
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"methylumi" # depends on broken package limma
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"shinyMethyl" # depends on broken package limma
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"MethylAidData" # depends on broken package limma
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"MethylAid" # depends on broken package limma
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"IlluminaHumanMethylation450kmanifest" # depends on broken package limma
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"skewr" # depends on broken package limma
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"wateRmelon" # depends on broken package limma
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"missMethyl" # depends on broken package limma
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"minfiData" # depends on broken package limma
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"IlluminaHumanMethylation450kanno_ilmn12_hg19" # depends on broken package limma
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"IlluminaHumanMethylation27kmanifest" # depends on broken package limma
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"FlowSorted_DLPFC_450k" # depends on broken package limma
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"FlowSorted_Blood_450k" # depends on broken package limma
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"ENmix" # depends on broken package limma
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"ELMER" # depends on broken package limma
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"MEAL" # depends on broken package limma
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"DMRcate" # depends on broken package limma
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"CopyNumber450kData" # depends on broken package limma
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"CopyNumber450k" # depends on broken package limma
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"conumee" # depends on broken package limma
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"ChAMP" # depends on broken package limma
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"minfi" # depends on broken package limma
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"regionReport" # depends on broken package limma
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"derfinderPlot" # depends on broken package limma
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"derfinder" # depends on broken package limma
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"bumphunter" # depends on broken package limma
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"birta" # depends on broken package limma
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"betr" # depends on broken package limma
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"beadarrayMSV" # depends on broken package limma
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"RobLoxBioC" # depends on broken package limma
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"maGUI" # depends on broken package limma
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"epigenomix" # depends on broken package limma
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"blima" # depends on broken package limma
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"BeadArrayUseCases" # depends on broken package limma
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"beadarrayFilter" # depends on broken package limma
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"beadarrayExampleData" # depends on broken package limma
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"beadarray" # depends on broken package limma
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"ballgown" # depends on broken package limma
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"attract" # depends on broken package limma
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"ArrayTools" # depends on broken package limma
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"arrayQuality" # depends on broken package limma
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"DrugVsDisease" # depends on broken package limma
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"ArrayExpress" # depends on broken package limma
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"oneChannelGUI" # depends on broken package limma
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"affylmGUI" # depends on broken package limma
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"AffyExpress" # depends on broken package limma
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"AgiMicroRna" # depends on broken package limma
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"affycoretools" # depends on broken package limma
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"ABSSeq" # depends on broken package limma
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"a4" # depends on broken package limma
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"a4Base" # depends on broken package limma
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"limma" # broken build
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"TransView" # broken build
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"TransView" # broken build
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"Starr" # broken build
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"Starr" # broken build
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"SICtools" # broken build
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"SICtools" # broken build
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@ -1285,7 +1019,6 @@ let
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"DEGraph" # depends on broken package RCytoscape
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"DEGraph" # depends on broken package RCytoscape
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"destiny" # depends on broken package VIM
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"destiny" # depends on broken package VIM
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"DiagTest3Grp" # depends on broken package nlopt
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"DiagTest3Grp" # depends on broken package nlopt
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"diffHic" # depends on broken package edgeR
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"difR" # depends on broken package nlopt
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"difR" # depends on broken package nlopt
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"DirichletMultinomial" # Build Is Broken
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"DirichletMultinomial" # Build Is Broken
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"DistatisR" # depends on broken package nlopt
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"DistatisR" # depends on broken package nlopt
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@ -1300,7 +1033,6 @@ let
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"easyanova" # depends on broken package nlopt
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"easyanova" # depends on broken package nlopt
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"ecd" # depends on broken package polynom
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"ecd" # depends on broken package polynom
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"edge" # depends on broken package nlopt
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"edge" # depends on broken package nlopt
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"edgeR" # broken url
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"eeptools" # depends on broken package nlopt
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"eeptools" # depends on broken package nlopt
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"EffectLiteR" # depends on broken package nlopt
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"EffectLiteR" # depends on broken package nlopt
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"effects" # depends on broken package nlopt
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"effects" # depends on broken package nlopt
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