Merge master into staging-next

maintainers/maintainer-list.nix

@@ -1707,6 +1707,12 @@
     githubId = 3086255;
     name = "Barry Moore II";
   };
+  chivay = {
+    email = "hubert.jasudowicz@gmail.com";
+    github = "chivay";
+    githubId = 14790226;
+    name = "Hubert Jasudowicz";
+  };
   chkno = {
     email = "chuck@intelligence.org";
     github = "chkno";

pkgs/applications/graphics/fig2dev/default.nix

@@ -13,11 +13,11 @@
 
 stdenv.mkDerivation rec {
   pname = "fig2dev";
-  version = "3.2.8";
+  version = "3.2.8a";
 
   src = fetchurl {
     url = "mirror://sourceforge/mcj/fig2dev-${version}.tar.xz";
-    sha256 = "0zg29yqknfafyzmmln4k7kydfb2dapk3r8ffvlqhj3cm8fp5h4lk";
+    sha256 = "1bm75lf9j54qpbjx8hzp6ixaayp1x9w4v3yxl6vxyw8g5m4sqdk3";
   };
 
   nativeBuildInputs = [ makeWrapper ];

pkgs/applications/graphics/pdfcpu/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "pdfcpu";
-  version = "0.3.9";
+  version = "0.3.11";
 
   src = fetchFromGitHub {
     owner = "pdfcpu";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-btkGn/67KVFB272j7u5MKZCeby2fyRthLLeXj8VgX7s=";
+    sha256 = "sha256-kLRxZW89Bm2N/KxFYetIq+auPBW/vFoUnB8uaEcM8Yo=";
   };
 
-  vendorSha256 = "sha256-/SsDDFveovJfuEdnOkxHAWccS8PJW5k9IHSxSJAgHMQ=";
+  vendorSha256 = "sha256-p/2Bu5h2P3ebgvSC12jdR2Zpd27xCFwtB/KZV0AULAM=";
 
   # No tests
   doCheck = false;

pkgs/applications/graphics/xfig/default.nix

@@ -14,11 +14,11 @@
 
 stdenv.mkDerivation rec {
   pname = "xfig";
-  version = "3.2.8";
+  version = "3.2.8a";
 
   src = fetchurl {
     url = "mirror://sourceforge/mcj/xfig-${version}.tar.xz";
-    sha256 = "1czamqp0xn0j6qjnasa3fjnrzi072v6qknylr6jrs4gwsfw4ybyw";
+    sha256 = "0y45i1gqg3r0aq55jk047l1hnv90kqis6ld9lppx6c5jhpmc0hxs";
   };
 
   nativeBuildInputs = [ makeWrapper ];

pkgs/applications/networking/cluster/octant/desktop.nix

@@ -2,7 +2,7 @@
 
 let
   pname = "octant-desktop";
-  version = "0.18.0";
+  version = "0.19.0";
   name = "${pname}-${version}";
 
   inherit (stdenv.hostPlatform) system;
@@ -15,8 +15,8 @@ let
   src = fetchurl {
     url = "https://github.com/vmware-tanzu/octant/releases/download/v${version}/Octant-${version}.${suffix}";
     sha256 = {
-      x86_64-linux = "sha256-sQxplTJ3xfHELepx+t7FtMpPTxTDoqTAL8oUz4sLaW0=";
+      x86_64-linux = "sha256-1XFb0zuyOy8XEUd9hoexItjq4assuWlWIzqw7pZxHx0=";
-      x86_64-darwin = "sha256-ov9j+SgGXCwUjQaX3eCxVvPwPgUIwtHJ6Lmx2crOfIM=";
+      x86_64-darwin = "sha256-e3v5BFX7wnx4sAQrOq+dBIDVPJYzQZKKvKjSX+dis2U=";
     }.${system};
   };
 

pkgs/applications/networking/syncthing/add-stcli-target.patch

@@ -1,17 +0,0 @@
-diff --git a/build.go b/build.go
-index c8a5c1cf..d75a8491 100644
---- a/build.go
-+++ b/build.go
-@@ -202,6 +202,12 @@ var targets = map[string]target{
- 			{src: "AUTHORS", dst: "deb/usr/share/doc/syncthing-relaypoolsrv/AUTHORS.txt", perm: 0644},
- 		},
- 	},
-+	"stcli": {
-+		name:        "stcli",
-+		description: "Syncthing CLI",
-+		buildPkgs:   []string{"github.com/syncthing/syncthing/cmd/stcli"},
-+		binaryName:  "stcli",
-+	},
- }
- 
- // These are repos we need to clone to run "go generate"

pkgs/applications/networking/syncthing/default.nix

@@ -3,23 +3,20 @@
 let
   common = { stname, target, postInstall ? "" }:
     buildGoModule rec {
-      version = "1.14.0";
+      pname = stname;
-      name = "${stname}-${version}";
+      version = "1.15.1";
 
       src = fetchFromGitHub {
         owner  = "syncthing";
         repo   = "syncthing";
         rev    = "v${version}";
-        sha256 = "1nkjbikin341v74fcwdaa2v5f3zhd8xr6pjhpka1fdw6vvnn4lnd";
+        sha256 = "sha256-d7b1hqW0ZWg74DyW1ZYMT7sIR7H89Ph38XE2Mhh7ySg=";
       };
 
-      vendorSha256 = "1kr6yyigi7bbi4xwpk009q801wvmf3aaw4m40ki0s6gjn0wjl4j3";
+      vendorSha256 = "sha256-00DdGJNCZ94Wj6yvVXJYNJZEiGxYbqTkX6wwon0O1tc=";
 
       doCheck = false;
 
-      patches = [
-        ./add-stcli-target.patch
-      ];
       BUILD_USER="nix";
       BUILD_HOST="nix";
 
@@ -83,12 +80,6 @@ in {
     '';
   };
 
-  syncthing-cli = common {
-    stname = "syncthing-cli";
-
-    target = "stcli";
-  };
-
   syncthing-discovery = common {
     stname = "syncthing-discovery";
     target = "stdiscosrv";

pkgs/applications/office/fava/default.nix

@@ -13,17 +13,17 @@ python3.pkgs.buildPythonApplication rec {
 
   propagatedBuildInputs = with python3.pkgs; [
     Babel
-    cheroot
-    flaskbabel
-    flask
-    jinja2
     beancount
+    cheroot
     click
+    flask
+    flaskbabel
+    jaraco_functools
+    jinja2
     markdown2
     ply
     simplejson
     werkzeug
-    jaraco_functools
   ];
 
   checkInputs = with python3.pkgs; [
@@ -39,10 +39,11 @@ python3.pkgs.buildPythonApplication rec {
     "test_cli"
   ];
 
-  meta = {
+  meta = with lib; {
-    homepage = "https://beancount.github.io/fava";
     description = "Web interface for beancount";
-    license = lib.licenses.mit;
+    homepage = "https://beancount.github.io/fava";
-    maintainers = with lib.maintainers; [ matthiasbeyer ];
+    changelog = "https://beancount.github.io/fava/changelog.html";
+    license = licenses.mit;
+    maintainers = with maintainers; [ bhipple ];
   };
 }

pkgs/desktops/gnome-3/extensions/unite/default.nix

@@ -1,13 +1,13 @@
 { lib, stdenv, gnome3, fetchFromGitHub, xprop, glib }:
 stdenv.mkDerivation rec {
   pname = "gnome-shell-extension-unite";
-  version = "48";
+  version = "49";
 
   src = fetchFromGitHub {
     owner = "hardpixel";
     repo = "unite-shell";
     rev = "v${version}";
-    sha256 = "1rc9h7zrg9pvyl619ychcp0w7wmnf4ndaq2knv490kzhy0idj18j";
+    sha256 = "12kjljw253hshaz6x886kg3mc93lb4pxwd05qihww6m5k4lqjcy5";
   };
 
   uuid = "unite@hardpixel.eu";

pkgs/development/libraries/jasper/default.nix

@@ -7,13 +7,13 @@
 
 stdenv.mkDerivation rec {
   pname = "jasper";
-  version = "2.0.26";
+  version = "2.0.28";
 
   src = fetchFromGitHub {
     owner = "jasper-software";
     repo = pname;
     rev = "version-${version}";
-    hash = "sha256-zmoC8nIsQm2u2cSzu2prdyofo3JFNzJ1bjbIZ3YaAn4=";
+    hash = "sha256-f3UG5w8GbwZcsFBaQN6v8kdEkKIGgizcAgaVZtKwS78=";
   };
 
   nativeBuildInputs = [

pkgs/development/libraries/librsync/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "librsync";
-  version = "2.3.1";
+  version = "2.3.2";
 
   src = fetchFromGitHub {
     owner = "librsync";
     repo = "librsync";
     rev = "v${version}";
-    sha256 = "131cd4asmpm4nskidzgiy8xibbnpibvvbq857a0pcky77min5g4z";
+    sha256 = "sha256-GNwOIZ2UjvsYIthotiPDBrabYzCGFG/YVEbwVa9Nwi4=";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/development/libraries/medfile/default.nix

@@ -9,6 +9,10 @@ stdenv.mkDerivation rec {
     sha256 = "1khzclkrd1yn9mz3g14ndgpsbj8j50v8dsjarcj6kkn9zgbbazc4";
   };
 
+  patches = [
+    ./hdf5-1.12.patch
+  ];
+
   nativeBuildInputs = [ cmake ];
   buildInputs = [ hdf5 ];
 

pkgs/development/libraries/medfile/hdf5-1.12.patch

@@ -0,0 +1,86 @@
+--- a/config/cmake_files/medMacros.cmake
++++ b/config/cmake_files/medMacros.cmake
+@@ -447,7 +447,7 @@ MACRO(MED_FIND_HDF5)
+     ##
+     ## Requires 1.10.x version
+     ##
+-    IF (NOT HDF_VERSION_MAJOR_REF EQUAL 1 OR NOT HDF_VERSION_MINOR_REF EQUAL 10 OR NOT HDF_VERSION_RELEASE_REF GREATER 1)
++    IF (HDF5_VERSION VERSION_LESS 1.10.2)
+         MESSAGE(FATAL_ERROR "HDF5 version is ${HDF_VERSION_REF}. Only versions >= 1.10.2 are supported.")
+     ENDIF()
+     ##
+--- a/src/ci/MEDfileCompatibility.c
++++ b/src/ci/MEDfileCompatibility.c
+@@ -71,7 +71,7 @@ MEDfileCompatibility(const char* const filename,
+   _hversionMMR=10000*_hmajeur+100*_hmineur+_hrelease;
+   /* ISCRUTE(_hversionMMR); */
+   /* ISCRUTE(HDF_VERSION_NUM_REF); */
+-  if ( (_hversionMMR >= HDF_VERSION_NUM_REF) && (_hmineur == HDF_VERSION_MINOR_REF) ) *hdfok = MED_TRUE;
++  if ( ((_hversionMMR >= HDF_VERSION_NUM_REF) && (_hmineur == HDF_VERSION_MINOR_REF)) || _hversionMMR > HDF_VERSION_NUM_REF ) *hdfok = MED_TRUE;
+ 
+   /* TODO : Vérifier si la version mineure HDF du fichier est supérieure
+      à la version mineure de la bibliothèque HDF utilisée :
+@@ -113,7 +113,7 @@ MEDfileCompatibility(const char* const filename,
+ #if MED_NUM_MAJEUR != 4
+ #error "Don't forget to update the test version here when you change the major version of the library !"
+ #endif
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to check the compatibility version of the library, depending on the internal hdf model choice !"
+ #error "Cf. _MEDfileCreate ..."
+ #endif
+--- a/src/hdfi/_MEDfileCreate.c
++++ b/src/hdfi/_MEDfileCreate.c
+@@ -159,7 +159,7 @@ med_idt _MEDfileCreate(const char * const filename, const med_access_mode access
+    * En HDF5-1.10.0p1 cela n'a aucun effet ! 
+    * Un test autoconf permet de fixer un intervalle de version HDF à MED.
+    */
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+    
+--- a/src/hdfi/_MEDfileOpen.c
++++ b/src/hdfi/_MEDfileOpen.c
+@@ -72,7 +72,7 @@ med_idt _MEDfileOpen(const char * const filename,const med_access_mode accessmod
+ 
+    •   The creation order tracking property, H5P_CRT_ORDER_TRACKED, has been set in the group creation property list (see H5Pset_link_creation_order). 
+   */
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+ /* L'avantage de bloquer le modèle interne HDF5 
+--- a/src/hdfi/_MEDmemFileOpen.c
++++ b/src/hdfi/_MEDmemFileOpen.c
+@@ -434,7 +434,7 @@ med_idt _MEDmemFileOpen(const char * const filename, med_memfile * const memfile
+     goto ERROR;
+   }
+ 
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+   if ( H5Pset_libver_bounds( _fapl, H5F_LIBVER_18, H5F_LIBVER_18) ) {
+--- a/src/hdfi/_MEDparFileCreate.c
++++ b/src/hdfi/_MEDparFileCreate.c
+@@ -64,7 +64,7 @@ med_idt _MEDparFileCreate(const char * const filename, const med_access_mode acc
+    * En HDF5-1.10.0p1 cela n'a aucun effet ! 
+    * Un test autoconf permet de fixer un intervalle de version HDF à MED.
+    */
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+    
+--- a/src/hdfi/_MEDparFileOpen.c
++++ b/src/hdfi/_MEDparFileOpen.c
+@@ -55,7 +55,7 @@ med_idt _MEDparFileOpen(const char * const filename,const med_access_mode access
+     MED_ERR_(_fid,MED_ERR_INIT,MED_ERR_PROPERTY,MED_ERR_PARALLEL_MSG);
+     goto ERROR;
+   }
+-#if H5_VERS_MINOR > 10
++#if H5_VERS_MINOR > 12
+ #error "Don't forget to change the compatibility version of the library !"
+ #endif
+   if ( H5Pset_libver_bounds( _fapl, H5F_LIBVER_18, H5F_LIBVER_18 ) ) {

pkgs/development/libraries/oneDNN/default.nix

@@ -5,13 +5,13 @@
 # https://github.com/oneapi-src/oneDNN#oneapi-deep-neural-network-library-onednn
 stdenv.mkDerivation rec {
   pname = "oneDNN";
-  version = "2.1.3";
+  version = "2.2.1";
 
   src = fetchFromGitHub {
     owner = "oneapi-src";
     repo = "oneDNN";
     rev = "v${version}";
-    sha256 = "sha256-xByu0HWeyDg5WV/zVO4HO/uwZ2RPrud0FlZHPfFom1E=";
+    sha256 = "sha256-orsllgBt2EHuZOy9vkgDK3XT6BfbtyIPvO4REB9tAgs=";
   };
 
   outputs = [ "out" "dev" "doc" ];

pkgs/development/python-modules/aioemonitor/default.nix

@@ -0,0 +1,49 @@
+{ lib
+, aiohttp
+, aioresponses
+, buildPythonPackage
+, fetchFromGitHub
+, pytest-asyncio
+, pytest-raises
+, pytestCheckHook
+, pythonOlder
+, xmltodict
+}:
+
+buildPythonPackage rec {
+  pname = "aioemonitor";
+  version = "1.0.5";
+  disabled = pythonOlder "3.7";
+
+  src = fetchFromGitHub {
+    owner = "bdraco";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "0h8zqqy8v8r1fl9bp3m8icr2sy44p0mbfl1hbb0zni17r9r50dhn";
+  };
+
+  propagatedBuildInputs = [
+    aiohttp
+    xmltodict
+  ];
+
+  checkInputs = [
+    aioresponses
+    pytest-asyncio
+    pytest-raises
+    pytestCheckHook
+  ];
+
+  postPatch = ''
+    substituteInPlace setup.py --replace '"pytest-runner>=5.2",' ""
+  '';
+
+  pythonImportsCheck = [ "aioemonitor" ];
+
+  meta = with lib; {
+    description = "Python client for SiteSage Emonitor";
+    homepage = "https://github.com/bdraco/aioemonitor";
+    license = with licenses; [ asl20 ];
+    maintainers = with maintainers; [ fab ];
+  };
+}

pkgs/development/python-modules/ifcopenshell/default.nix

@@ -1,11 +1,10 @@
 { lib, stdenv
 , buildPythonPackage
 , fetchFromGitHub
-, substituteAll
 , python
 , gcc10
 , cmake
-, boost172
+, boost17x
 , icu
 , swig
 , pcre
@@ -16,29 +15,21 @@
 
 buildPythonPackage rec {
   pname = "ifcopenshell";
-  version = "0.6.0b0";
+  version = "210410";
   format = "other";
 
   src = fetchFromGitHub {
     owner  = "IfcOpenShell";
     repo   = "IfcOpenShell";
-    rev    = "v${version}";
+    rev    = "blenderbim-${version}";
     fetchSubmodules = true;
-    sha256 = "1ad1s9az41z2f46rbi1jnr46mgc0q4h5kz1jm9xdlwifqv9y04g1";
+    sha256 = "1g52asxrqcfj01iqvf03k3bb6rg3v04hh1wc3nmn329a2lwjbxpw";
   };
 
-  patches = [
-    (substituteAll {
-      name = "site-packages.patch";
-      src = ./site-packages.patch;
-      site_packages = "lib/${python.libPrefix}/site-packages";
-    })
-  ];
-
   nativeBuildInputs = [ gcc10 cmake ];
 
   buildInputs = [
-    boost172
+    boost17x
     icu
     pcre
     libxml2
@@ -48,7 +39,9 @@ buildPythonPackage rec {
     cd cmake
   '';
 
+  PYTHONUSERBASE=".";
   cmakeFlags = [
+    "-DUSERSPACE_PYTHON_PREFIX=ON"
     "-DOCC_INCLUDE_DIR=${opencascade-occt}/include/opencascade"
     "-DOCC_LIBRARY_DIR=${opencascade-occt}/lib"
     "-DOPENCOLLADA_INCLUDE_DIR=${opencollada}/include/opencollada"

pkgs/development/python-modules/ifcopenshell/site-packages.patch

@@ -1,32 +0,0 @@
---- a/src/ifcwrap/CMakeLists.txt
-+++ b/src/ifcwrap/CMakeLists.txt
-@@ -68,26 +68,17 @@ endif()
- # directory in which the wrapper can be installed.
- FIND_PACKAGE(PythonInterp)
- IF(PYTHONINTERP_FOUND AND NOT "${PYTHON_EXECUTABLE}" STREQUAL "")
--    EXECUTE_PROCESS(
--        COMMAND ${PYTHON_EXECUTABLE} -c "import sys; from distutils.sysconfig import get_python_lib; sys.stdout.write(get_python_lib(1))"
--        OUTPUT_VARIABLE python_package_dir
--    )
--
--    IF("${python_package_dir}" STREQUAL "")
--        MESSAGE(WARNING "Unable to locate Python site-package directory, unable to install the Python wrapper")
--    ELSE()
-         FILE(GLOB_RECURSE sourcefiles "${CMAKE_CURRENT_SOURCE_DIR}/../ifcopenshell-python/ifcopenshell/*.py")
-         FOREACH(file ${sourcefiles})
-             FILE(RELATIVE_PATH relative "${CMAKE_CURRENT_SOURCE_DIR}/../ifcopenshell-python/ifcopenshell/" "${file}")
-             GET_FILENAME_COMPONENT(dir "${relative}" DIRECTORY)
- 			INSTALL(FILES "${file}"
--                    DESTINATION "${python_package_dir}/ifcopenshell/${dir}")
-+                    DESTINATION "@site_packages@/ifcopenshell/${dir}")
-         ENDFOREACH()
-         INSTALL(FILES "${CMAKE_BINARY_DIR}/ifcwrap/ifcopenshell_wrapper.py"
--                DESTINATION "${python_package_dir}/ifcopenshell")
-+                DESTINATION "@site_packages@/ifcopenshell")
-         INSTALL(TARGETS _ifcopenshell_wrapper
--                DESTINATION "${python_package_dir}/ifcopenshell")
--    ENDIF()
-+                DESTINATION "@site_packages@/ifcopenshell")
- ELSE()
-     MESSAGE(WARNING "No Python interpreter found, unable to install the Python wrapper")
- ENDIF()

pkgs/development/python-modules/karton-core/default.nix

@@ -0,0 +1,34 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, minio
+, python
+, redis
+}:
+
+buildPythonPackage rec {
+  pname = "karton-core";
+  version = "4.2.0";
+
+  src = fetchFromGitHub {
+    owner = "CERT-Polska";
+    repo = "karton";
+    rev = "v${version}";
+    sha256 = "08j1bm9g58576sswcrpfczaki24nlqqaypp7qv1rxxwsyp5pq6h6";
+  };
+
+  propagatedBuildInputs = [ minio redis ];
+
+  checkPhase = ''
+    runHook preCheck
+    ${python.interpreter} -m unittest discover
+    runHook postCheck
+  '';
+
+  meta = with lib; {
+    description = "Distributed malware processing framework";
+    homepage = "https://karton-core.readthedocs.io/";
+    maintainers = with maintainers; [ chivay ];
+    license = licenses.bsd3;
+  };
+}

pkgs/development/python-modules/pytorch/default.nix

@@ -38,6 +38,7 @@ assert !(MPISupport && cudaSupport) || mpi.cudatoolkit == cudatoolkit;
 assert !cudaSupport || magma.cudatoolkit == cudatoolkit;
 
 let
+  setBool = v: if v then "1" else "0";
   cudatoolkit_joined = symlinkJoin {
     name = "${cudatoolkit.name}-unsplit";
     # nccl is here purely for semantic grouping it could be moved to nativeBuildInputs
@@ -160,16 +161,17 @@ in buildPythonPackage rec {
   # Use pytorch's custom configurations
   dontUseCmakeConfigure = true;
 
-  BUILD_NAMEDTENSOR = true;
+  BUILD_NAMEDTENSOR = setBool true;
-  BUILD_DOCS = buildDocs;
+  BUILD_DOCS = setBool buildDocs;
 
-  USE_MKL = blas.implementation == "mkl";
+  # We only do an imports check, so do not build tests either.
+  BUILD_TEST = setBool false;
 
   # Unlike MKL, oneDNN (née MKLDNN) is FOSS, so we enable support for
   # it by default. PyTorch currently uses its own vendored version
   # of oneDNN through Intel iDeep.
-  USE_MKLDNN = mklDnnSupport;
+  USE_MKLDNN = setBool mklDnnSupport;
-  USE_MKLDNN_CBLAS = mklDnnSupport;
+  USE_MKLDNN_CBLAS = setBool mklDnnSupport;
 
   preBuild = ''
     export MAX_JOBS=$NIX_BUILD_CORES
@@ -198,7 +200,7 @@ in buildPythonPackage rec {
   PYTORCH_BUILD_VERSION = version;
   PYTORCH_BUILD_NUMBER = 0;
 
-  USE_SYSTEM_NCCL=useSystemNccl;                  # don't build pytorch's third_party NCCL
+  USE_SYSTEM_NCCL=setBool useSystemNccl;                  # don't build pytorch's third_party NCCL
 
   # Suppress a weird warning in mkl-dnn, part of ideep in pytorch
   # (upstream seems to have fixed this in the wrong place?)

pkgs/development/python-modules/twilio/default.nix

@@ -12,19 +12,28 @@
 
 buildPythonPackage rec {
   pname = "twilio";
-  version = "6.51.1";
+  version = "6.56.0";
+
 
-  # tests not included in PyPi, so fetch from github instead
   src = fetchFromGitHub {
     owner = "twilio";
     repo = "twilio-python";
     rev = version;
-    sha256 = "sha256-OHtmUFm/9GkpIzz0DdSdlHyBFRIgu8GxQ4S4VMJik9o=";
+    sha256 = "sha256-vVJuuPxVyOqnplPYrjCjIm5IyIFZvsCMoDLrrHpHK+4=";
   };
 
-  buildInputs = [ nose mock ];
+  propagatedBuildInputs = [
+    pyjwt
+    pysocks
+    pytz
+    requests
+    six
+  ];
 
-  propagatedBuildInputs = [ pyjwt pysocks pytz six requests ];
+  checkInputs = [
+    mock
+    nose
+  ];
 
   pythonImportsCheck = [ "twilio" ];
 

pkgs/development/python-modules/wakeonlan/default.nix

@@ -1,7 +1,6 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, fetchpatch
 , poetry-core
 , pytestCheckHook
 , pythonOlder
@@ -9,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "wakeonlan";
-  version = "2.0.0";
+  version = "2.0.1";
   disabled = pythonOlder "3.6";
   format = "pyproject";
 
@@ -17,7 +16,7 @@ buildPythonPackage rec {
     owner = "remcohaszing";
     repo = "pywakeonlan";
     rev = version;
-    sha256 = "0p9jyiv0adcymbnmbay72g9phlbhsr4kmrwxscbdjq81gcmxsi0y";
+    sha256 = "sha256-WgoL8ntfEaHcvVbJjdewe0wE31Lq7WBj8Bppeq1uJx8=";
   };
 
   nativeBuildInputs = [
@@ -28,15 +27,6 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
-  patches = [
-    # Switch to poetry-core, https://github.com/remcohaszing/pywakeonlan/pull/19
-    (fetchpatch {
-      name = "switch-to-poetry-core.patch";
-      url = "https://github.com/remcohaszing/pywakeonlan/commit/6aa5050ed94ef718dfcd0b946546b6a738f47ee3.patch";
-      sha256 = "1xzj2464ziwm7bp05bzbjwjp9whmgp1py3isr41d92qvnil86vm6";
-    })
-  ];
-
   pytestFlagsArray = [ "test_wakeonlan.py" ];
 
   pythonImportsCheck = [ "wakeonlan" ];

pkgs/development/tools/air/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "air";
-  version = "1.15.1";
+  version = "1.25";
 
   src = fetchFromGitHub {
     owner = "cosmtrek";
     repo = "air";
     rev = "v${version}";
-    sha256 = "0d34k8hyag84j24bhax4gvg8mkzqyhdqd16rfirpfjiqvqh0vdkz";
+    sha256 = "sha256-on9Rb+QGFWx7/k9xD+tcaPu6YNaBBkFBHHMSWJbZpWM=";
   };
 
-  vendorSha256 = "0k28rxnd0vyb6ljbi83bm1gl7j4r660a3ckjxnzc2qzwvfj69g53";
+  vendorSha256 = "sha256-B7AgUFjiW3P1dU88u3kswbCQJ7Qq7rgPlX+b+3Pq1L4=";
 
   subPackages = [ "." ];
 

pkgs/development/tools/analysis/rizin/cutter.nix

@@ -11,13 +11,13 @@
 
 mkDerivation rec {
   pname = "cutter";
-  version = "2.0.0";
+  version = "2.0.1";
 
   src = fetchFromGitHub {
     owner = "rizinorg";
     repo = "cutter";
     rev = "v${version}";
-    sha256 = "sha256-uIN/NR+swu9Ie0wP2aBhw5WBvTe9NDmzSs+lQMCeavc=";
+    sha256 = "sha256-IQCJOUgefSdMSa27E6I/CL35Kx5pHq/u+5Q0FHUAR1E=";
     fetchSubmodules = true;
   };
 

pkgs/development/tools/analysis/rizin/default.nix

@@ -18,29 +18,42 @@
 , ninja
 , capstone
 , tree-sitter
+, python3
 }:
 
 stdenv.mkDerivation rec {
   pname = "rizin";
-  version = "0.1.2";
+  version = "0.2.0";
 
   src = fetchurl {
-    url = "https://github.com/rizinorg/rizin/releases/download/v${version}/rizin-src-${version}.tar.xz";
+    url = "https://github.com/rizinorg/rizin/releases/download/v${version}/rizin-src-v${version}.tar.xz";
-    sha256 = "sha256-npUp8wJiKAaQKSigXtndhJLTJ4+pyFqa0FwDLBqR/sE=";
+    sha256 = "sha256-CGHeo247syha+rVtiAQz0XkEYK9p4DHTnLK2FhBOvE8=";
   };
 
   mesonFlags = [
-    "-Duse_sys_capstone=true"
+    "-Duse_sys_capstone=enabled"
-    "-Duse_sys_magic=true"
+    "-Duse_sys_magic=enabled"
-    "-Duse_sys_libzip=true"
+    "-Duse_sys_libzip=enabled"
-    "-Duse_sys_zlib=true"
+    "-Duse_sys_zlib=enabled"
-    "-Duse_sys_xxhash=true"
+    "-Duse_sys_xxhash=enabled"
-    "-Duse_sys_lz4=true"
+    "-Duse_sys_lz4=enabled"
-    "-Duse_sys_openssl=true"
+    "-Duse_sys_openssl=enabled"
-    "-Duse_sys_tree_sitter=true"
+    "-Duse_sys_tree_sitter=enabled"
   ];
 
-  nativeBuildInputs = [ pkg-config meson ninja cmake ];
+  nativeBuildInputs = [ pkg-config meson ninja cmake (python3.withPackages (ps: [ ps.setuptools ])) ];
+
+  # meson's find_library seems to not use our compiler wrapper if static paraemter
+  # is either true/false... We work around by also providing LIBRARY_PATH
+  preConfigure = ''
+    LIBRARY_PATH=""
+    for b in ${toString (map lib.getLib buildInputs)}; do
+      if [[ -d "$b/lib" ]]; then
+        LIBRARY_PATH="$b/lib''${LIBRARY_PATH:+:}$LIBRARY_PATH"
+      fi
+    done
+    export LIBRARY_PATH
+  '';
 
   buildInputs = [
     file

pkgs/development/tools/clpm/default.nix

@@ -2,7 +2,7 @@
 , stdenv
 , fetchgit
 , wrapLisp
-, sbcl
+, sbcl_2_0_9
 , openssl
 }:
 
@@ -18,7 +18,7 @@ stdenv.mkDerivation rec {
   };
 
   buildInputs = [
-    (wrapLisp sbcl)
+    (wrapLisp sbcl_2_0_9)
     openssl
   ];
 

pkgs/development/tools/github-commenter/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "github-commenter";
-  version = "0.8.0";
+  version = "0.9.0";
 
   src = fetchFromGitHub {
     owner = "cloudposse";
     repo = pname;
     rev = version;
-    sha256 = "HgiCgyig+49g275G6zZ0kGTxt1TSfFK8kt+SOf4ei74=";
+    sha256 = "sha256-IBo4FAoYX1FmrmQ9mlyyu1TGLY7dlH7pWalBoRb2puE=";
   };
 
-  vendorSha256 = "Gw+cR5sA5MGuclcvur8olmRtK04LDP5vKJ5k7yZO3B0=";
+  vendorSha256 = "sha256-H1SnNG+/ALYs7h/oT8zWBhAXOuCFY0Sto2ATBBZg2ek=";
 
   meta = with lib; {
     description = "Command line utility for creating GitHub comments on Commits, Pull Request Reviews or Issues";

pkgs/development/tools/ocaml/ocp-indent/default.nix

@@ -4,6 +4,8 @@ buildDunePackage rec {
   version = "1.8.2";
   pname = "ocp-indent";
 
+  useDune2 = true;
+
   src = fetchzip {
     url = "https://github.com/OCamlPro/ocp-indent/archive/${version}.tar.gz";
     sha256 = "1dvcl108ir9nqkk4mjm9xhhj4p9dx9bmg8bnms54fizs1x3x8ar3";

pkgs/games/anki/bin.nix

@@ -3,14 +3,14 @@
 let
   pname = "anki-bin";
   # Update hashes for both Linux and Darwin!
-  version = "2.1.40";
+  version = "2.1.43";
 
   unpacked = stdenv.mkDerivation {
     inherit pname version;
 
     src = fetchurl {
       url = "https://github.com/ankitects/anki/releases/download/${version}/anki-${version}-linux.tar.bz2";
-      sha256 = "0zcvjm0dv3mjln2npv415yfaa1fykif738qkis52x3pq1by2aiam";
+      sha256 = "0kadv3fxi76h7xxmb4lckkgcwiv0b7cn630l62dxa2abxibans29";
     };
 
     installPhase = ''
@@ -49,7 +49,7 @@ if stdenv.isLinux then buildFHSUserEnv (appimageTools.defaultFhsEnvArgs // {
 
   src = fetchurl {
     url = "https://github.com/ankitects/anki/releases/download/${version}/anki-${version}-mac.dmg";
-    sha256 = "14f0sp9h963qix4wa0kg7z8a2nhch9aybv736rm55aqk6mady6vi";
+    sha256 = "0vvgiybq1ygq7cly1r4ircgzg2cpprindr7nnlbnrmandjy2kw49";
   };
 
   nativeBuildInputs = [ undmg ];

pkgs/misc/emulators/yapesdl/default.nix

@@ -0,0 +1,41 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, pkg-config
+, SDL2
+}:
+
+stdenv.mkDerivation rec {
+  pname = "yapesdl";
+  version = "0.70.2";
+
+  src = fetchFromGitHub {
+    owner = "calmopyrin";
+    repo = pname;
+    rev = "v${version}";
+    hash = "sha256-51P6wNaSfVA3twu+yRUKXguEmVBvuuEnHxH1Zl1vsCc=";
+  };
+
+  nativeBuildInputs = [
+    pkg-config
+  ];
+  buildInputs = [
+    SDL2
+  ];
+
+  installPhase = ''
+    runHook preInstall
+    install --directory $out/bin $out/share/doc/$pname
+    install yapesdl $out/bin/
+    install README.SDL $out/share/doc/$pname/
+    runHook postInstall
+  '';
+
+  meta = with lib; {
+    homepage = "http://yape.plus4.net/";
+    description = "Multiplatform Commodore 64 and 264 family emulator";
+    license = licenses.gpl2Plus;
+    maintainers = with maintainers; [ AndersonTorres ];
+    platforms = platforms.unix;
+  };
+}

pkgs/os-specific/linux/kernel/linux-xanmod.nix

@@ -1,7 +1,7 @@
 { lib, stdenv, buildLinux, fetchFromGitHub, ... } @ args:
 
 let
-  version = "5.11.12";
+  version = "5.11.13";
   suffix = "xanmod1-cacule";
 in
   buildLinux (args // rec {
@@ -12,7 +12,7 @@ in
       owner = "xanmod";
       repo = "linux";
       rev = modDirVersion;
-      sha256 = "sha256-omRZ9oAmW3mauUolPf/lgMFMwUCYU4YaZ+OS75Ag+lM=";
+      sha256 = "sha256-LUbkccAfDS0/FnNhHn64bkC8qwBD0NKcdZRzNoSw4uA=";
       extraPostFetch = ''
         rm $out/.config
       '';

pkgs/servers/monitoring/prometheus/promscale.nix

@@ -5,16 +5,16 @@
 
 buildGoModule rec {
   pname = "promscale";
-  version = "0.2.1";
+  version = "0.3.0";
 
   src = fetchFromGitHub {
     owner = "timescale";
     repo = pname;
     rev = version;
-    sha256 = "sha256-f/fpCyAw9BQ6ccEZm/xsTCjINjFtX3Q6SmPuJNVSJVI=";
+    sha256 = "sha256-kZYFOuY6FFM35mP+o/YU5SM5H9ziOq9BQ8T1RX7rhGE=";
   };
 
-  vendorSha256 = "sha256-/woSbtrOI3BVBhh+A2kO1CB1BLzBciwOqvSbGkFeMEU=";
+  vendorSha256 = "sha256-1VOhDOfFE4BpDR4XfhLoXJFuTDkG1nx88tVvTF3ZVxU=";
 
   buildFlagsArray = [ "-ldflags=-s -w -X github.com/timescale/promscale/pkg/version.Version=${version} -X github.com/timescale/promscale/pkg/version.CommitHash=${src.rev}" ];
 

pkgs/servers/rtsp-simple-server/default.nix

@@ -5,16 +5,16 @@
 
 buildGoModule rec {
   pname = "rtsp-simple-server";
-  version = "0.15.3";
+  version = "0.15.4";
 
   src = fetchFromGitHub {
     owner = "aler9";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-eY3XtGmHp7TM+lXC9tdd51x7sLuuZfBDJxTZ79Ye0Qs=";
+    sha256 = "sha256-6XdX4HEjDRt9WtqyHIv/NLt7IytNDeJLgCeTHTGybRI=";
   };
 
-  vendorSha256 = "sha256-SiWcOI1XxrwwTAzp8HC5zOO5e2oSWBMFRYsW2RwPA5I=";
+  vendorSha256 = "sha256-T5LWbxYsKnG5eaYLR/rms6+2DXv2lV9o39BvF7HapZY=";
 
   # Tests need docker
   doCheck = false;

pkgs/tools/graphics/wdisplays/default.nix

@@ -1,36 +1,25 @@
-{ lib, stdenv, fetchFromGitHub, meson, ninja, pkg-config, gtk3, epoxy, wayland, wrapGAppsHook
+{ lib, stdenv, fetchFromGitHub, meson, ninja, pkg-config, gtk3, epoxy, wayland, wrapGAppsHook }:
-, fetchpatch
-}:
 
 stdenv.mkDerivation rec {
   pname = "wdisplays";
-  version = "1.0";
+  version = "unstable-2021-04-03";
 
   nativeBuildInputs = [ meson ninja pkg-config wrapGAppsHook ];
 
   buildInputs = [ gtk3 epoxy wayland ];
 
   src = fetchFromGitHub {
-    owner = "cyclopsian";
+    owner = "luispabon";
     repo = "wdisplays";
-    rev = version;
+    rev = "7f2eac0d2aa81b5f495da7950fd5a94683f7868e";
-    sha256 = "1xhgrcihja2i7yg54ghbwr1v6kf8jnsfcp364yb97vkxskc4y21y";
+    sha256 = "sha256-cOF3+T34zPro58maWUouGG+vlLm2C5NfcH7PZhSvApE=";
   };
 
-  patches = [
-    # Fixes `Gdk-Message: 10:26:38.752: Error reading events from display: Success`
-    # https://github.com/cyclopsian/wdisplays/pull/20
-    (fetchpatch {
-      url = "https://github.com/cyclopsian/wdisplays/commit/5198a9c94b40ff157c284df413be5402f1b75118.patch";
-      sha256 = "1xwphyn0ksf8isy9dz3mfdhmsz4jv02870qz5615zs7aqqfcwn85";
-    })
-  ];
-
   meta = with lib; {
     description = "A graphical application for configuring displays in Wayland compositors";
-    homepage = "https://github.com/cyclopsian/wdisplays";
+    homepage = "https://github.com/luispabon/wdisplays";
-    maintainers = with lib.maintainers; [ lheckemann ma27 ];
+    maintainers = with maintainers; [ lheckemann ma27 ];
-    license = lib.licenses.mit;
+    license = licenses.gpl3Plus;
-    platforms = lib.platforms.linux;
+    platforms = platforms.linux;
   };
 }

pkgs/tools/networking/shadowsocks-rust/default.nix

@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "shadowsocks-rust";
-  version = "1.10.3";
+  version = "1.10.5";
 
   src = fetchFromGitHub {
     rev = "v${version}";
     owner = "shadowsocks";
     repo = pname;
-    sha256 = "1ds2270pw187hbg01lcqxw0631m0ypvbza47z5ndgn6dxprga9wk";
+    sha256 = "0nagn7792qniczzv0912h89bn8rm8hyikdiw7cqwknx0hw8dwz1z";
   };
 
-  cargoSha256 = "0aarhv78ab3z893cgiixxjpxl6xcwi96saavnzw4zd68988lb24r";
+  cargoSha256 = "0arqc0wnvfkmk8xzsdc6fvd1adazrw950ld8xyh7r588pyphjmhn";
 
   RUSTC_BOOTSTRAP = 1;
 

pkgs/tools/networking/tcpdump/default.nix

@@ -1,22 +1,14 @@
-{ lib, stdenv, fetchurl, libpcap, perl, fetchpatch }:
+{ lib, stdenv, fetchurl, libpcap, perl }:
 
 stdenv.mkDerivation rec {
   pname = "tcpdump";
-  version = "4.9.3";
+  version = "4.99.0";
 
   src = fetchurl {
     url = "http://www.tcpdump.org/release/${pname}-${version}.tar.gz";
-    sha256 = "0434vdcnbqaia672rggjzdn4bb8p8dchz559yiszzdk0sjrprm1c";
+    sha256 = "0hmqh2fx8rgs9v1mk3vpywj61xvkifz260q685xllxr8jmxg3wlc";
   };
 
-  patches = [
-    # Patch for CVE-2020-8037
-    (fetchpatch {
-      url = "https://github.com/the-tcpdump-group/tcpdump/commit/32027e199368dad9508965aae8cd8de5b6ab5231.patch";
-      sha256 = "sha256-bO3aV032ru9+M/9isBRjmH8jTZLKj9Zf9ha2rmOaZwc=";
-    })
-  ];
-
   postPatch = ''
     patchShebangs tests
   '';
@@ -29,11 +21,11 @@ stdenv.mkDerivation rec {
     (stdenv.hostPlatform != stdenv.buildPlatform)
     "ac_cv_linux_vers=2";
 
-  meta = {
+  meta = with lib; {
     description = "Network sniffer";
-    homepage = "http://www.tcpdump.org/";
+    homepage = "https://www.tcpdump.org/";
-    license = "BSD-style";
+    license = licenses.bsd3;
-    maintainers = with lib.maintainers; [ globin ];
+    maintainers = with maintainers; [ globin ];
-    platforms = lib.platforms.unix;
+    platforms = platforms.unix;
   };
 }

pkgs/tools/security/chipsec/compile-ko.diff

@@ -0,0 +1,13 @@
+diff --git i/setup.py w/setup.py
+index cfe2665..5795874 100755
+--- i/setup.py
++++ w/setup.py
+@@ -179,7 +179,7 @@ class build_ext(_build_ext):
+             driver_build_function = self._build_win_driver 
+             self._build_win_compression()
+ 
+-        if not self.skip_driver:
++        if True:
+             driver_build_function()
+ 
+     def get_source_files(self):

pkgs/tools/security/chipsec/default.nix

@@ -1,29 +1,54 @@
-{ stdenv, lib, fetchFromGitHub, python2Packages, nasm, libelf
+{ lib
-, kernel ? null, withDriver ? false }:
+, stdenv
-python2Packages.buildPythonApplication rec {
+, fetchFromGitHub
+, kernel ? null
+, libelf
+, nasm
+, python3
+, withDriver ? false
+}:
+
+python3.pkgs.buildPythonApplication rec {
   pname = "chipsec";
-  version = "1.5.1";
+  version = "1.6.1";
+  disabled = !stdenv.isLinux;
 
   src = fetchFromGitHub {
     owner = "chipsec";
     repo = "chipsec";
     rev = version;
-    sha256 = "1rxr9i08a22m15slvlkrhnki30jixi2ds096kmmc2nqzfr9yibmb";
+    sha256 = "01sp24z63r3nqxx57zc4873b8i5dqipy7yrxzrwjns531vznhiy2";
   };
 
-  disabled = !stdenv.isLinux;
+  patches = lib.optionals withDriver [ ./ko-path.diff ./compile-ko.diff ];
+
+  KSRC = lib.optionalString withDriver "${kernel.dev}/lib/modules/${kernel.modDirVersion}/build";
 
   nativeBuildInputs = [
-    nasm libelf
+    libelf
+    nasm
   ];
 
-  setupPyBuildFlags = lib.optional (!withDriver) "--skip-driver";
+  checkInputs = [
+    python3.pkgs.distro
+    python3.pkgs.pytestCheckHook
+  ];
 
-  checkPhase = "python setup.py build "
+  preBuild = lib.optionalString withDriver ''
-             + lib.optionalString (!withDriver) "--skip-driver "
+    export CHIPSEC_BUILD_LIB=$(mktemp -d)
-             + "test";
+    mkdir -p $CHIPSEC_BUILD_LIB/chipsec/helper/linux
+  '';
 
-  KERNEL_SRC_DIR = lib.optionalString withDriver "${kernel.dev}/lib/modules/${kernel.modDirVersion}/build";
+  preInstall = lib.optionalString withDriver ''
+    mkdir -p $out/${python3.pkgs.python.sitePackages}/drivers/linux
+    mv $CHIPSEC_BUILD_LIB/chipsec/helper/linux/chipsec.ko \
+      $out/${python3.pkgs.python.sitePackages}/drivers/linux/chipsec.ko
+  '';
+
+  setupPyBuildFlags = [ "--build-lib=$CHIPSEC_BUILD_LIB" ]
+                   ++ lib.optional (!withDriver) "--skip-driver";
+
+  pythonImportsCheck = [ "chipsec" ];
 
   meta = with lib; {
     description = "Platform Security Assessment Framework";
@@ -34,7 +59,7 @@ python2Packages.buildPythonApplication rec {
       interfaces, and forensic capabilities. It can be run on Windows, Linux,
       Mac OS X and UEFI shell.
     '';
-    license = licenses.gpl2;
+    license = licenses.gpl2Only;
     homepage = "https://github.com/chipsec/chipsec";
     maintainers = with maintainers; [ johnazoidberg ];
     platforms = if withDriver then [ "x86_64-linux" ] else platforms.all;

pkgs/tools/security/chipsec/ko-path.diff

@@ -0,0 +1,13 @@
+diff --git c/chipsec/helper/linux/linuxhelper.py i/chipsec/helper/linux/linuxhelper.py
+index c51b5e6..4be05ea 100644
+--- c/chipsec/helper/linux/linuxhelper.py
++++ i/chipsec/helper/linux/linuxhelper.py
+@@ -152,7 +152,7 @@ class LinuxHelper(Helper):
+             else:
+                 a2 = "a2=0x{}".format(phys_mem_access_prot)
+ 
+-        driver_path = os.path.join(chipsec.file.get_main_dir(), "chipsec", "helper", "linux", "chipsec.ko" )
++        driver_path = os.path.join(chipsec.file.get_main_dir(), "drivers", "linux", "chipsec.ko" )
+         if not os.path.exists(driver_path):
+             driver_path += ".xz"
+             if not os.path.exists(driver_path):

pkgs/tools/security/hfinger/default.nix

@@ -0,0 +1,36 @@
+{ lib
+, fetchFromGitHub
+, python3
+, wireshark-cli
+}:
+
+python3.pkgs.buildPythonApplication rec {
+  pname = "hfinger";
+  version = "0.2.0";
+  disabled = python3.pythonOlder "3.3";
+
+  src = fetchFromGitHub {
+    owner = "CERT-Polska";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1vz8mf572qyng684fvb9gdwaaiybk7mjmikbymvjvy24d10raak1";
+  };
+
+  propagatedBuildInputs = with python3.pkgs; [
+    fnvhash
+    python_magic
+  ] ++ [
+    wireshark-cli
+  ];
+
+  # Project has no tests
+  doCheck = false;
+  pythonImportsCheck = [ "hfinger" ];
+
+  meta = with lib; {
+    description = "Fingerprinting tool for HTTP requests";
+    homepage = "https://github.com/CERT-Polska/hfinger";
+    license = with licenses; [ gpl3Only ];
+    maintainers = with maintainers; [ fab ];
+  };
+}

pkgs/top-level/aliases.nix

@@ -729,6 +729,7 @@ mapAliases ({
   sup = throw "sup was deprecated on 2019-09-10: abandoned by upstream";
   swfdec = throw "swfdec has been removed as broken and unmaintained."; # added 2020-08-23
   swtpm-tpm2 = swtpm; # added 2021-02-26
+  syncthing-cli = syncthing; # added 2021-04-06
   system_config_printer = system-config-printer;  # added 2016-01-03
   systemd-cryptsetup-generator = throw "systemd-cryptsetup-generator is now included in the systemd package"; # added 2020-07-12
   systemd_with_lvm2 = throw "systemd_with_lvm2 is obsolete, enabled by default via the lvm module"; # added 2020-07-12

pkgs/top-level/all-packages.nix

@@ -5491,6 +5491,8 @@ in
 
   idle3tools = callPackage ../tools/system/idle3tools { };
 
+  ifcopenshell = with python3Packages; toPythonApplication ifcopenshell;
+
   iftop = callPackage ../tools/networking/iftop { };
 
   ifuse = callPackage ../tools/filesystems/ifuse { };
@@ -6029,7 +6031,9 @@ in
     inherit (python3Packages) ansi2html;
   };
 
-  medfile = callPackage ../development/libraries/medfile { };
+  medfile = callPackage ../development/libraries/medfile {
+    hdf5 = hdf5.override { usev110Api = true; };
+  };
 
   meilisearch = callPackage ../servers/search/meilisearch {
     inherit (darwin.apple_sdk.frameworks) IOKit Security;
@@ -14758,6 +14762,8 @@ in
 
   hdt = callPackage ../misc/hdt {};
 
+  hfinger = callPackage ../tools/security/hfinger { };
+
   herqq = libsForQt5.callPackage ../development/libraries/herqq { };
 
   hidapi = callPackage ../development/libraries/hidapi {
@@ -25880,7 +25886,6 @@ in
 
   inherit (callPackages ../applications/networking/syncthing { })
     syncthing
-    syncthing-cli
     syncthing-discovery
     syncthing-relay;
 
@@ -30575,6 +30580,8 @@ in
     inherit (darwin.apple_sdk.frameworks) Carbon Cocoa OpenGL OpenAL;
   };
 
+  yapesdl = callPackage ../misc/emulators/yapesdl { };
+
   x16-emulator = callPackage ../misc/emulators/commander-x16/emulator.nix { };
   x16-rom = callPackage ../misc/emulators/commander-x16/rom.nix { };
 

pkgs/top-level/python-packages.nix

@@ -245,6 +245,8 @@ in {
 
   aioeafm = callPackage ../development/python-modules/aioeafm { };
 
+  aioemonitor = callPackage ../development/python-modules/aioemonitor { };
+
   aioesphomeapi = callPackage ../development/python-modules/aioesphomeapi { };
 
   aioeventlet = callPackage ../development/python-modules/aioeventlet { };
@@ -3665,6 +3667,8 @@ in {
 
   kaptan = callPackage ../development/python-modules/kaptan { };
 
+  karton-core = callPackage ../development/python-modules/karton-core { };
+
   kazoo = callPackage ../development/python-modules/kazoo { };
 
   kconfiglib = callPackage ../development/python-modules/kconfiglib { };