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pythonPackages.tiledb: 0.5.6 -> 0.6.6

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include a few improvements to tests
This commit is contained in:
Robert Scott 2020-09-05 18:23:21 +01:00
parent 33b860eca1
commit 438d5b6b61
1 changed files with 11 additions and 4 deletions
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15
pkgs/development/python-modules/tiledb/default.nix
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@ -3,28 +3,31 @@
, buildPythonPackage , buildPythonPackage
, fetchFromGitHub , fetchFromGitHub
, cython , cython
, pybind11
, tiledb , tiledb
, numpy , numpy
, wheel , wheel
, isPy3k , isPy3k
, setuptools_scm , setuptools_scm
, psutil , psutil
, pandas
}: }:
buildPythonPackage rec { buildPythonPackage rec {
pname = "tiledb"; pname = "tiledb";
version = "0.5.6"; version = "0.6.6";
format = "setuptools"; format = "setuptools";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "TileDB-Inc"; owner = "TileDB-Inc";
repo = "TileDB-Py"; repo = "TileDB-Py";
rev = version; rev = version;
sha256 = "0cgm4dhyqay26xmrzlv21ha8qh55m4q3yr338lrv81ngz77zxsvw"; sha256 = "0b2kn1xyf7d994kz29dpqiaf8yzvx0axw4yqi854c54pl22ddgzl";
}; };
nativeBuildInputs = [ nativeBuildInputs = [
cython cython
pybind11
setuptools_scm setuptools_scm
]; ];
@ -39,6 +42,8 @@ buildPythonPackage rec {
checkInputs = [ checkInputs = [
psutil psutil
# optional
pandas
]; ];
TILEDB_PATH = tiledb; TILEDB_PATH = tiledb;
@ -57,16 +62,18 @@ buildPythonPackage rec {
"test_docs" "dont_test_docs" "test_docs" "dont_test_docs"
# these tests don't always fail # these tests don't always fail
substituteInPlace tiledb/tests/test_libtiledb.py --replace \ substituteInPlace tiledb/tests/test_libtiledb.py --replace \
"test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" "test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" \
--replace "test_memory_cleanup" "dont_test_memory_cleanup"
substituteInPlace tiledb/tests/test_metadata.py --replace \ substituteInPlace tiledb/tests/test_metadata.py --replace \
"test_metadata_consecutive" "dont_test_metadata_consecutive" "test_metadata_consecutive" "dont_test_metadata_consecutive"
''; '';
checkPhase = '' checkPhase = ''
pushd "$out" pushd "$TMPDIR"
${python.interpreter} -m unittest tiledb.tests.all.suite_test ${python.interpreter} -m unittest tiledb.tests.all.suite_test
popd popd
''; '';
pythonImportsCheck = [ "tiledb" ];
meta = with lib; { meta = with lib; {
description = "Python interface to the TileDB storage manager"; description = "Python interface to the TileDB storage manager";