Merge master into staging-next

doc/builders/packages/firefox.section.md

@@ -9,7 +9,7 @@ The `wrapFirefox` function allows to pass policies, preferences and extension th
   myFirefox = wrapFirefox firefox-unwrapped {
     nixExtensions = [
       (fetchFirefoxAddon {
-        name = "ublock";
+        name = "ublock"; # Has to be unique!
         url = "https://addons.mozilla.org/firefox/downloads/file/3679754/ublock_origin-1.31.0-an+fx.xpi";
         sha256 = "1h768ljlh3pi23l27qp961v1hd0nbj2vasgy11bmcrlqp40zgvnr";
       })
@@ -42,7 +42,7 @@ The `wrapFirefox` function allows to pass policies, preferences and extension th
 If `nixExtensions != null` then all manually installed addons will be uninstalled from your browser profile.
 To view available enterprise policies visit [enterprise policies](https://github.com/mozilla/policy-templates#enterprisepoliciesenabled)
 or type into the Firefox url bar: `about:policies#documentation`.
-Nix installed addons do not have a valid signature, which is why signature verification is disabled. This does not compromise security because downloaded addons are checksumed and manual addons can't be installed.
+Nix installed addons do not have a valid signature, which is why signature verification is disabled. This does not compromise security because downloaded addons are checksumed and manual addons can't be installed. Also make sure that the `name` field of fetchFirefoxAddon is unique. If you remove an addon from the nixExtensions array, rebuild and start Firefox the removed addon will be completly removed with all of its settings.
 
 ## Troubleshooting {#sec-firefox-troubleshooting}
 If addons do not appear installed although they have been defined in your nix configuration file reset the local addon state of your Firefox profile by clicking `help -> restart with addons disabled -> restart -> refresh firefox`. This can happen if you switch from manual addon mode to nix addon mode and then back to manual mode and then again to nix addon mode.

nixos/doc/manual/release-notes/rl-2103.xml

@@ -370,6 +370,13 @@
      <literal>unbound-control</literal> without passing a custom configuration location.
     </para>
    </listitem>
+   <listitem>
+    <para>
+     The <literal>services.dnscrypt-proxy2</literal> module now takes the upstream's example configuration and updates it with the user's settings.
+
+     An option has been added to restore the old behaviour if you prefer to declare the configuration from scratch.
+    </para>
+   </listitem>
    <listitem>
     <para>
      NixOS now defaults to the unified cgroup hierarchy (cgroupsv2).

nixos/modules/services/networking/dnscrypt-proxy2.nix

@@ -27,6 +27,16 @@ in
       default = {};
     };
 
+    upstreamDefaults = mkOption {
+      description = ''
+        Whether to base the config declared in <literal>services.dnscrypt-proxy2.settings</literal> on the upstream example config (<link xlink:href="https://github.com/DNSCrypt/dnscrypt-proxy/blob/master/dnscrypt-proxy/example-dnscrypt-proxy.toml"/>)
+
+        Disable this if you want to declare your dnscrypt config from scratch.
+      '';
+      type = types.bool;
+      default = true;
+    };
+
     configFile = mkOption {
       description = ''
         Path to TOML config file. See: <link xlink:href="https://github.com/DNSCrypt/dnscrypt-proxy/blob/master/dnscrypt-proxy/example-dnscrypt-proxy.toml"/>
@@ -38,7 +48,13 @@ in
         json = builtins.toJSON cfg.settings;
         passAsFile = [ "json" ];
       } ''
-        ${pkgs.remarshal}/bin/json2toml < $jsonPath > $out
+        ${if cfg.upstreamDefaults then ''
+          ${pkgs.remarshal}/bin/toml2json ${pkgs.dnscrypt-proxy2.src}/dnscrypt-proxy/example-dnscrypt-proxy.toml > example.json
+          ${pkgs.jq}/bin/jq --slurp add example.json $jsonPath > config.json # merges the two
+        '' else ''
+          cp $jsonPath config.json
+        ''}
+        ${pkgs.remarshal}/bin/json2toml < config.json > $out
       '';
       defaultText = literalExample "TOML file generated from services.dnscrypt-proxy2.settings";
     };

pkgs/applications/misc/dasel/default.nix

@@ -5,16 +5,16 @@
 
 buildGoModule rec {
   pname = "dasel";
-  version = "1.8.0";
+  version = "1.9.1";
 
   src = fetchFromGitHub {
     owner = "TomWright";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-N27XmrbZTLeNkNvGDsChqKZrAagkQoGFaJeeZ1/Qnkw=";
+    sha256 = "sha256-W95lMULucXcCDqSDWtRoXZM+zh8mmXhoEeFIukPFI0o=";
   };
 
-  vendorSha256 = "1552k85z4s6gv7sss7dccv3h8x22j2sr12icp6s7s0a3i4iwyksw";
+  vendorSha256 = "1il1vnv0v97qh8f47md5i6qaac2k8par0pd0z7zqg67vxq6gim85";
 
   buildFlagsArray = ''
     -ldflags=-s -w -X github.com/tomwright/dasel/internal.Version=${version}

pkgs/applications/networking/browsers/firefox/wrapper.nix

@@ -1,5 +1,5 @@
 { stdenv, lib, makeDesktopItem, makeWrapper, lndir, config
-, replace, fetchurl, zip, unzip, jq, xdg_utils
+, replace, fetchurl, zip, unzip, jq, xdg_utils, writeText
 
 ## various stuff that can be plugged in
 , flashplayer, hal-flash
@@ -97,12 +97,17 @@ let
       #   EXTRA PREF CHANGES  #
       #                       #
       #########################
-      policiesJson = builtins.toFile "policies.json"
+      policiesJson = writeText "policies.json" (builtins.toJSON enterprisePolicies);
-        (builtins.toJSON enterprisePolicies);
 
       usesNixExtensions = nixExtensions != null;
 
-      extensions = builtins.map (a:
+      nameArray = builtins.map(a: a.name) (if usesNixExtensions then nixExtensions else []);
+
+      # Check that every extension has a unqiue .name attribute
+      # and an extid attribute
+      extensions = if nameArray != (lib.unique nameArray) then
+        throw "Firefox addon name needs to be unique"
+      else builtins.map (a:
         if ! (builtins.hasAttr "extid" a) then
         throw "nixExtensions has an invalid entry. Missing extid attribute. Please use fetchfirefoxaddon"
         else
@@ -128,12 +133,19 @@ let
                 };
               }
             ) {} extensions;
-        }
+          } //
+          {
+            Extensions = {
+              Install = lib.foldr (e: ret:
+                ret ++ [ "${e.outPath}/${e.extid}.xpi" ]
+                ) [] extensions;
+            };
+          }
         // extraPolicies;
       };
 
-      mozillaCfg = builtins.toFile "mozilla.cfg" ''
+      mozillaCfg =  writeText "mozilla.cfg" ''
-// First line must be a comment
+        // First line must be a comment
 
         // Disables addon signature checking
         // to be able to install addons that do not have an extid
@@ -320,18 +332,13 @@ let
         # preparing for autoconfig
         mkdir -p "$out/lib/${firefoxLibName}/defaults/pref"
 
-        cat > "$out/lib/${firefoxLibName}/defaults/pref/autoconfig.js" <<EOF
+        echo 'pref("general.config.filename", "mozilla.cfg");' > "$out/lib/${firefoxLibName}/defaults/pref/autoconfig.js"
-          pref("general.config.filename", "mozilla.cfg");
+        echo 'pref("general.config.obscure_value", 0);' >> "$out/lib/${firefoxLibName}/defaults/pref/autoconfig.js"
-          pref("general.config.obscure_value", 0);
-        EOF
 
         cat > "$out/lib/${firefoxLibName}/mozilla.cfg" < ${mozillaCfg}
 
         mkdir -p $out/lib/${firefoxLibName}/distribution/extensions
 
-        for i in ${toString extensions}; do
-          ln -s -t $out/lib/${firefoxLibName}/distribution/extensions $i/*
-        done
         #############################
         #                           #
         #   END EXTRA PREF CHANGES  #

pkgs/applications/science/logic/coq/default.nix

@@ -36,6 +36,7 @@ let
    "8.11.2" = "0f77ccyxdgbf1nrj5fa8qvrk1cyfy06fv8gj9kzfvlcgn0cf48sa";
    "8.12.0" = "18dc7k0piv6v064zgdadpw6mkkxk7j663hb3svgj5236fihjr0cz";
    "8.12.1" = "1rkcyjjrzcqw9xk93hsq0vvji4f8r5iq0f739mghk60bghkpnb7q";
+   "8.13+beta1" = "1v4a6dpj41flspa4ihcr7m5ahqz10kbn62fmrldmv7gzq6jsyfyq";
   }.${version};
   coq-version = stdenv.lib.versions.majorMinor version;
   versionAtLeast = stdenv.lib.versionAtLeast coq-version;
@@ -118,7 +119,9 @@ self = stdenv.mkDerivation {
      then [ ocamlPackages.lablgtk3-sourceview3 glib gnome3.defaultIconTheme wrapGAppsHook ]
      else [ ocamlPackages.lablgtk ]);
 
-  propagatedBuildInputs = stdenv.lib.optional (versionAtLeast "8.12") ocamlPackages.num;
+  propagatedBuildInputs =
+     stdenv.lib.optional (versionAtLeast "8.13") ocamlPackages.zarith
+  ++ stdenv.lib.optional (coq-version == "8.12") ocamlPackages.num;
 
   postPatch = ''
     UNAME=$(type -tp uname)

pkgs/applications/version-management/git-and-tools/gh/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "gh";
-  version = "1.3.1";
+  version = "1.4.0";
 
   src = fetchFromGitHub {
     owner = "cli";
     repo = "cli";
     rev = "v${version}";
-    sha256 = "1j1nyx4ly87g0hk3hfw3qbykb64hrg3vg4r52z1w146v6ln7lm7h";
+    sha256 = "08gxx9dwk24r1c5jkc9mqzcicxqmrdw0bi94nr517hk5cqsav2sl";
   };
 
-  vendorSha256 = "19gv7ggbry46h40d9sc5cqba95vjfknzdd1cn3xa5409qaczg9lg";
+  vendorSha256 = "1ih7z883pffb6hnx51h8823d95b52d6dy1gk6ln7j25fqhcfvsy8";
 
   nativeBuildInputs = [ installShellFiles ];
 

pkgs/build-support/fetchfirefoxaddon/default.nix

@@ -1,16 +1,20 @@
 {stdenv, lib, coreutils, unzip, jq, zip, fetchurl,writeScript,  ...}:
-{ name
+
+{
+  name
 , url
 , md5 ? ""
 , sha1 ? ""
 , sha256 ? ""
 , sha512 ? ""
+, fixedExtid ? null
 , hash ? ""
 }:
+
 stdenv.mkDerivation rec {
 
   inherit name;
-  extid = "${src.outputHash}@${name}";
+  extid = if fixedExtid == null then "nixos@${name}" else fixedExtid;
   passthru = {
     exitd=extid;
   };
@@ -35,4 +39,3 @@ stdenv.mkDerivation rec {
   };
   nativeBuildInputs = [ coreutils unzip zip jq  ];
 }
-

pkgs/desktops/xfce/core/exo/default.nix

@@ -1,5 +1,5 @@
-{ mkXfceDerivation, docbook_xsl, glib, libxslt, perlPackages, gtk2, gtk3
+{ mkXfceDerivation, docbook_xsl, glib, libxslt, gtk2, gtk3
-, libxfce4ui, libxfce4util }:
+, libxfce4ui, libxfce4util, perl }:
 
 mkXfceDerivation {
   category = "xfce";
@@ -10,7 +10,6 @@ mkXfceDerivation {
 
   nativeBuildInputs = [
     libxslt
-    perlPackages.URI
     docbook_xsl
   ];
 
@@ -20,6 +19,8 @@ mkXfceDerivation {
     glib
     libxfce4ui
     libxfce4util
+
+    (perl.withPackages(ps: with ps; [ URI ])) # for $out/lib/xfce4/exo/exo-compose-mail
   ];
 
   # Workaround https://bugzilla.xfce.org/show_bug.cgi?id=15825

pkgs/development/coq-modules/bignums/default.nix

@@ -29,6 +29,10 @@ let params = {
         rev = "V8.12.0";
         sha256 = "14ijb3qy2hin3g4djx437jmnswxxq7lkfh3dwh9qvrds9a015yg8";
       };
+      "8.13" = {
+        rev = "V8.13.0";
+        sha256 = "1n66i7hd9222b2ks606mak7m4f0dgy02xgygjskmmav6h7g2sx7y";
+      };
     };
     param = params.${coq.coq-version};
 in

pkgs/development/coq-modules/mathcomp/default.nix

@@ -66,6 +66,7 @@ let
   #######################################################################
     # sha256 of released mathcomp versions
     sha256 = {
+      "1.12.0"       = "1ccfny1vwgmdl91kz5xlmhq4wz078xm4z5wpd0jy5rn890dx03wp";
       "1.11.0"       = "06a71d196wd5k4wg7khwqb7j7ifr7garhwkd54s86i0j7d6nhl3c";
       "1.11+beta1"   = "12i3zznwajlihzpqsiqniv20rklj8d8401lhd241xy4s21fxkkjm";
       "1.10.0"       = "1b9m6pwxxyivw7rgx82gn5kmgv2mfv3h3y0mmjcjfypi8ydkrlbv";
@@ -76,6 +77,7 @@ let
     };
     # versions of coq compatible with released mathcomp versions
     coq-versions     = {
+      "1.12.0"       = flip elem [ "8.13" ];
       "1.11.0"       = flip elem [ "8.7" "8.8" "8.9" "8.10" "8.11" "8.12" ];
       "1.11+beta1"   = flip elem [ "8.7" "8.8" "8.9" "8.10" "8.11" "8.12" ];
       "1.10.0"       = flip elem [ "8.7" "8.8" "8.9" "8.10" "8.11" ];
@@ -96,7 +98,7 @@ let
     # mathcomp preferred versions by decreasing order
     # (the first version in the list will be tried first)
     version-preferences =
-      [ "1.10.0" "1.11.0" "1.9.0" "1.8.0" "1.7.0" "1.6.1" ];
+      [ "1.12.0" "1.10.0" "1.11.0" "1.9.0" "1.8.0" "1.7.0" "1.6.1" ];
 
     # list of core mathcomp packages sorted by dependency order
     packages = _version: # unused in current versions of mathcomp

pkgs/development/python-modules/lml/default.nix

@@ -1,7 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, nose
+, pytestCheckHook
 , mock
 }:
 
@@ -15,11 +15,12 @@ buildPythonPackage rec {
   };
 
   checkInputs = [
-    nose
+    pytestCheckHook
     mock
   ];
 
-  checkPhase = "nosetests";
+  # Tests broken.
+  doCheck = false;
 
   meta = {
     description = "Load me later. A lazy plugin management system for Python";

pkgs/development/tools/go-tools/default.nix

@@ -5,16 +5,16 @@
 
 buildGoModule rec {
   pname = "go-tools";
-  version = "2020.1.6";
+  version = "2020.2";
 
   src = fetchFromGitHub {
     owner = "dominikh";
     repo = "go-tools";
     rev = version;
-    sha256 = "1r83gx7k4fiz3wlshhniz1i39xv492nni1nvfxjfqgnmkavb6r4x";
+    sha256 = "1qqpr481rx6n75xp1racsjjyn2fa8f28pcb0r9kd56qq890h3qgj";
   };
 
-  vendorSha256 = "1g04rzirjv90s1i542cqi2abhgh8b74qwhp1hp1cszgb7k8nndmr";
+  vendorSha256 = "1axci0l7pymy66j6lilm49ksrwp7dvnj5krai2kvy96n3arcnsvq";
 
   doCheck = false;
 

pkgs/os-specific/linux/kernel/hardened/patches.json

@@ -14,11 +14,6 @@
         "sha256": "08srahgfzynv2bfd0ym6vgl1c0xjfqg6qvgzlq85y9pb7fain5yp",
         "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.83.a/linux-hardened-5.4.83.a.patch"
     },
-    "5.8": {
-        "name": "linux-hardened-5.8.18.a.patch",
-        "sha256": "1r2n74nbyi3dp5zql9sk504xkpil6ylbyd99zqqva4nd3qg17c99",
-        "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.8.18.a/linux-hardened-5.8.18.a.patch"
-    },
     "5.9": {
         "name": "linux-hardened-5.9.14.a.patch",
         "sha256": "1rr61s9k7nmr27r4vkgpvvra7r8ksi6h6axf5kcbx7krbgdmwmfv",

pkgs/os-specific/linux/kernel/linux-5.10.nix

@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "5.10";
+  version = "5.10.1";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz";
-    sha256 = "sha256-3N+Z5D6YMw2SUBaYW/vHuDxm02e3FLLeDLv8v4PYykM=";
+    sha256 = "0p2fl7kl4ckphq17xir7n7vgrzlhbdqmyd2yyp4yilwvih9625pd";
   };
 } // (args.argsOverride or {}))

pkgs/top-level/all-packages.nix

@@ -16803,6 +16803,12 @@ in
 
   perlcritic = perlPackages.PerlCritic;
 
+  sqitchMysql = callPackage ../development/tools/misc/sqitch {
+    name = "sqitch-mysql";
+    databaseModule = perlPackages.DBDmysql;
+    sqitchModule = perlPackages.AppSqitch;
+  };
+
   sqitchPg = callPackage ../development/tools/misc/sqitch {
     name = "sqitch-pg";
     databaseModule = perlPackages.DBDPg;
@@ -26997,6 +27003,7 @@ in
     coqPackages_8_10 coq_8_10
     coqPackages_8_11 coq_8_11
     coqPackages_8_12 coq_8_12
+    coqPackages_8_13 coq_8_13
     coqPackages      coq
   ;
 

pkgs/top-level/coq-packages.nix

@@ -125,6 +125,9 @@ in rec {
   coq_8_12 = callPackage ../applications/science/logic/coq {
     version = "8.12.1";
   };
+  coq_8_13 = callPackage ../applications/science/logic/coq {
+    version = "8.13+beta1";
+  };
 
   coqPackages_8_5 = mkCoqPackages coq_8_5;
   coqPackages_8_6 = mkCoqPackages coq_8_6;
@@ -134,6 +137,7 @@ in rec {
   coqPackages_8_10 = mkCoqPackages coq_8_10;
   coqPackages_8_11 = mkCoqPackages coq_8_11;
   coqPackages_8_12 = mkCoqPackages coq_8_12;
+  coqPackages_8_13 = mkCoqPackages coq_8_13;
   coqPackages = recurseIntoAttrs (lib.mapDerivationAttrset lib.dontDistribute
     coqPackages_8_11
   );