Merge branch 'staging'

Contains security fixes in X server and X libs.
On Hydra, the amount to rebuild on master is now higher than on staging;
the comparison looks OK.

pkgs/development/tools/build-managers/cmake/default.nix

@@ -17,7 +17,7 @@ with stdenv.lib;
 let
   os = stdenv.lib.optionalString;
   majorVersion = "3.9";
-  minorVersion = "2";
+  minorVersion = "4";
   version = "${majorVersion}.${minorVersion}";
 in
 
@@ -28,8 +28,8 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "${meta.homepage}files/v${majorVersion}/cmake-${version}.tar.gz";
-    # from https://cmake.org/files/v3.9/cmake-3.9.2-SHA-256.txt
-    sha256 = "954a5801a456ee48e76f01107c9a4961677dd0f3e115275bbd18410dc22ba3c1";
+    # from https://cmake.org/files/v3.9/cmake-3.9.4-SHA-256.txt
+    sha256 = "b5d86f12ae0072db520fdbdad67405f799eb728b610ed66043c20a92b4906ca1";
   };
 
   prePatch = optionalString (!useSharedLibraries) ''

pkgs/development/tools/build-managers/meson/default.nix

@@ -1,12 +1,12 @@
 { lib, python3Packages }:
 python3Packages.buildPythonApplication rec {
-  version = "0.42.1";
+  version = "0.43.0";
   pname = "meson";
   name = "${pname}-${version}";
 
   src = python3Packages.fetchPypi {
     inherit pname version;
-    sha256 = "1phf1xpwm8m85qiiirkqhrf5aigx7ajaw0l59d6lzadf1fmgfx5v";
+    sha256 = "0qn5hyzvam3rimn7g3671s1igj7fbkwdnf5nc8jr4d5swy25mq61";
   };
 
   postFixup = ''

pkgs/development/tools/continuous-integration/drone/default.nix

@@ -53,10 +53,6 @@ buildGoPackage rec {
     go generate github.com/drone/drone/store/datastore/ddl
   '';
 
-  postInstall = stdenv.lib.optionalString stdenv.isDarwin ''
-    install_name_tool -delete_rpath $out/lib -add_rpath $bin $bin/bin/drone
-  '';
-
   src = fetchFromGitHub {
     owner = "drone";
     repo = "drone";

pkgs/development/tools/documentation/gtk-doc/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, pkgconfig, perl, python, libxml2Python, libxslt, which
+{ stdenv, fetchurl, autoreconfHook, pkgconfig, perl, python, libxml2Python, libxslt, which
 , docbook_xml_dtd_43, docbook_xsl, gnome_doc_utils, dblatex, gettext, itstool }:
 
 stdenv.mkDerivation rec {
@@ -10,29 +10,20 @@ stdenv.mkDerivation rec {
     sha256 = "0hpxcij9xx9ny3gs9p0iz4r8zslw8wqymbyababiyl7603a6x90y";
   };
 
+  patches = [
+    ./respect-xml-catalog-files-var.patch
+  ];
+
   outputDevdoc = "out";
 
-  # maybe there is a better way to pass the needed dtd and xsl files
-  # "-//OASIS//DTD DocBook XML V4.1.2//EN" and "http://docbook.sourceforge.net/release/xsl/current/html/chunk.xsl"
-  preConfigure = ''
-    mkdir -p $out/nix-support
-    cat > $out/nix-support/catalog.xml << EOF
-    <?xml version="1.0"?>
-    <!DOCTYPE catalog PUBLIC "-//OASIS//DTD Entity Resolution XML Catalog V1.0//EN" "http://www.oasis-open.org/committees/entity/release/1.0/catalog.dtd">
-    <catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
-      <nextCatalog  catalog="${docbook_xsl}/xml/xsl/docbook/catalog.xml" />
-      <nextCatalog  catalog="${docbook_xml_dtd_43}/xml/dtd/docbook/catalog.xml" />
-    </catalog>
-    EOF
-
-    configureFlags="--with-xml-catalog=$out/nix-support/catalog.xml --disable-scrollkeeper";
-  '';
-
+  nativeBuildInputs = [ autoreconfHook ];
   buildInputs =
    [ pkgconfig perl python libxml2Python libxslt docbook_xml_dtd_43 docbook_xsl
      gnome_doc_utils dblatex gettext which itstool
    ];
 
+  configureFlags = "--disable-scrollkeeper";
+
   meta = with stdenv.lib; {
     homepage = https://www.gtk.org/gtk-doc;
     description = "Tools to extract documentation embedded in GTK+ and GNOME source code";

pkgs/development/tools/documentation/gtk-doc/respect-xml-catalog-files-var.patch

@@ -0,0 +1,28 @@
+diff --git a/m4/gtkdoc_jh_check_xml_catalog.m4 b/m4/gtkdoc_jh_check_xml_catalog.m4
+index 618c1c9..1842a0d 100644
+--- a/m4/gtkdoc_jh_check_xml_catalog.m4
++++ b/m4/gtkdoc_jh_check_xml_catalog.m4
+@@ -10,7 +10,21 @@ AC_DEFUN([JH_CHECK_XML_CATALOG],
+ 		AC_MSG_RESULT([found])
+ 		ifelse([$3],,,[$3])
+ 	else
+-		AC_MSG_RESULT([not found])
+-		ifelse([$4],,[AC_MSG_ERROR([could not find ifelse([$2],,[$1],[$2]) in XML catalog])],[$4])
++		jh_check_xml_catalog_saved_ifs="$IFS"
++		IFS=' '
++		for f in $XML_CATALOG_FILES; do
++			if [[ -f "$f" ]] && \
++				AC_RUN_LOG([$XMLCATALOG --noout "$f" "$1" >&2]); then
++				jh_found_xmlcatalog=true
++				AC_MSG_RESULT([found])
++				ifelse([$3],,,[$3])
++				break
++			fi
++		done
++		IFS="$jh_check_xml_catalog_saved_ifs"
++		if ! $jh_found_xmlcatalog; then
++			AC_MSG_RESULT([not found])
++			ifelse([$4],,[AC_MSG_ERROR([could not find ifelse([$2],,[$1],[$2]) in XML catalog])],[$4])
++		fi
+ 	fi
+ ])

pkgs/development/tools/textql/default.nix

@@ -16,10 +16,6 @@ buildGoPackage rec {
 
   goDeps = ./deps.nix;
 
-  preFixup = stdenv.lib.optionalString stdenv.isDarwin ''
-    install_name_tool -delete_rpath $out/lib $bin/bin/textql
-  '';
-
   meta = with stdenv.lib; {
     description = "Execute SQL against structured text like CSV or TSV";
     homepage = https://github.com/dinedal/textql;