Merge branch 'master' into staging-next

pkgs/development/python-modules/autopep8/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "autopep8";
-  version = "1.5";
+  version = "1.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0f592a0447acea0c2b0a9602be1e4e3d86db52badd2e3c84f0193bfd89fd3a43";
+    sha256 = "1swr8ccm3mafcm3zpbwyn22kjs39lbqmg8w41sh7yb3gskgy2syc";
   };
 
   propagatedBuildInputs = [ pycodestyle ];

pkgs/development/python-modules/gensim/default.nix

@@ -11,12 +11,12 @@
 
 buildPythonPackage rec {
   pname = "gensim";
-  version = "3.8.1";
+  version = "3.8.2";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "33277fc0a8d7b0c7ce70fcc74bb82ad39f944c009b334856c6e86bf552b1dfdc";
+    sha256 = "1x9gvz954h10wgq02wybi21llwwjj9r1gal2qr82q7g1h9g0dqs6";
   };
 
   propagatedBuildInputs = [ smart_open numpy six scipy ];

pkgs/development/python-modules/gphoto2/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "gphoto2";
-  version = "2.2.1";
+  version = "2.2.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "118zm25c8mlajfl0pzssnwz4b8lamj9dgymla9rn4nla7l244a0r";
+    sha256 = "0sd3w0gpnb58hg8mv20nfqf4g1plr9rkn51h088xdsd6i97r9x99";
   };
 
   nativeBuildInputs = [ pkgconfig ];

pkgs/development/python-modules/gspread/default.nix

@@ -5,12 +5,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "3.3.0";
+  version = "3.3.1";
   pname = "gspread";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1nlmg7lnj162nql1acw9z7n1043sk49j11arlfn766i9ykvq6hng";
+    sha256 = "0mpvhndr38hb5x95xk2mqqasvcy6pa7ck8801bvpg5y3lwn5nka0";
   };
 
   propagatedBuildInputs = [ requests ];

pkgs/development/python-modules/hydra-check/default.nix

@@ -0,0 +1,45 @@
+{ lib
+, buildPythonPackage
+, pythonOlder
+, fetchFromGitHub
+, docopt
+, requests
+, beautifulsoup4
+, black
+, mypy
+, flake8
+}:
+
+buildPythonPackage rec {
+  pname = "hydra-check";
+  version = "1.1.1";
+  disabled = pythonOlder "3.5";
+
+  src = fetchFromGitHub {
+    owner = "nix-community";
+    repo = "hydra-check";
+    rev = version;
+    sha256 = "1dmsscsib8ckp496gsfqxmq8d35zs71n99xmziq9iprvy7n5clq2";
+  };
+
+  propagatedBuildInputs = [
+    docopt
+    requests
+    beautifulsoup4
+  ];
+
+  checkInputs = [ mypy ];
+
+  checkPhase = ''
+    echo -e "\x1b[32m## run mypy\x1b[0m"
+    mypy hydracheck
+  '';
+
+  meta = with lib;{
+    description = "check hydra for the build status of a package";
+    homepage = "https://github.com/nix-community/hydra-check";
+    license = licenses.mit;
+    maintainers = with maintainers; [ makefu ];
+  };
+}
+

pkgs/development/python-modules/ibis-framework/default.nix

@@ -1,29 +1,26 @@
-{ lib
-, buildPythonPackage
-, fetchPypi
+{ lib, buildPythonPackage, fetchPypi, isPy27, pythonAtLeast
+, graphviz
 , multipledispatch
 , numpy
 , pandas
+, pyarrow
+, pytest
 , pytz
 , regex
-, toolz
-, isPy27
-, pytest
-, sqlalchemy
 , requests
+, sqlalchemy
 , tables
-, pyarrow
-, graphviz
+, toolz
 }:
 
 buildPythonPackage rec {
   pname = "ibis-framework";
-  version = "1.2.0";
-  disabled = isPy27;
+  version = "1.3.0";
+  disabled = isPy27 || pythonAtLeast "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3a0b79dae6924be0a79669c881a9a1d4817997ad2f81a0f3b1cd03d70aebb071";
+    sha256 = "1my94a11jzg1hv6ln8wxklbqrg6z5l2l77vr89aq0829yyxacmv7";
   };
 
   propagatedBuildInputs = [
@@ -44,8 +41,11 @@ buildPythonPackage rec {
     pytest
   ];
 
+  # ignore tests which require test dataset, or frameworks not available
   checkPhase = ''
-    pytest ibis
+    pytest ibis \
+      --ignore=ibis/tests/all \
+      --ignore=ibis/{sql,spark}
   '';
 
   meta = with lib; {

pkgs/development/python-modules/pikepdf/default.nix

@@ -22,12 +22,12 @@
 
 buildPythonPackage rec {
   pname = "pikepdf";
-  version = "1.10.2";
+  version = "1.11.0";
   disabled = ! isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1y94ay2jz4m55nlyrg283xsjqsxigmj7vzrzf1mskbpjb20335fb";
+    sha256 = "0v9sraihad0vz8dv3zc5xm5f2ixwbpr2kfpya5s0mgnrn6l19nds";
   };
 
   buildInputs = [

pkgs/development/python-modules/py-multibase/default.nix

@@ -0,0 +1,46 @@
+{ buildPythonPackage
+, fetchPypi
+, isPy27
+, lib
+, morphys
+, pytest
+, pytestrunner
+, python-baseconv
+, six
+}:
+buildPythonPackage rec {
+  pname = "py-multibase";
+  version = "1.0.1";
+  disabled = isPy27;
+
+  src = fetchPypi {
+    inherit pname version ;
+    sha256 = "6ed706ea321b487ba82e4172a9c82d61dacd675c865f576a937a94bca1a23443";
+  };
+
+  postPatch = ''
+    substituteInPlace setup.cfg --replace "[pytest]" ""
+    substituteInPlace setup.cfg --replace "python_classes = *TestCase" ""
+  '';
+
+  nativeBuildInputs = [
+    pytestrunner
+  ];
+
+  propagatedBuildInputs = [
+    morphys
+    six
+    python-baseconv
+  ];
+
+  checkInputs = [
+    pytest
+  ];
+
+  meta = with lib; {
+    description = "Multibase is a protocol for distinguishing base encodings and other simple string encodings";
+    homepage = "https://github.com/multiformats/py-multibase";
+    license = licenses.mit;
+    maintainers = with maintainers; [ rakesh4g ];
+  };
+}

pkgs/development/python-modules/py-multihash/default.nix

@@ -0,0 +1,49 @@
+{ base58
+, buildPythonPackage
+, fetchPypi
+, isPy27
+, lib
+, morphys
+, pytest
+, pytestcov
+, pytestrunner
+, six
+, variants
+, varint
+}:
+
+buildPythonPackage rec {
+  pname = "py-multihash";
+  version = "0.2.3";
+
+  src = fetchPypi {
+    inherit pname version ;
+    sha256 = "f0ade4de820afdc4b4aaa40464ec86c9da5cae3a4578cda2daab4b0eb7e5b18d";
+  };
+
+  nativeBuildInputs = [
+    pytestrunner
+  ];
+
+  propagatedBuildInputs = [
+    base58
+    morphys
+    six
+    variants
+    varint
+  ];
+
+  checkInputs = [
+    pytest
+    pytestcov
+  ];
+
+  disabled = isPy27;
+
+  meta = with lib; {
+    description = "Self describing hashes - for future proofing";
+    homepage = "https://github.com/multiformats/py-multihash";
+    license = licenses.mit;
+    maintainers = with maintainers; [ rakesh4g ];
+  };
+}

pkgs/development/python-modules/pychromecast/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "PyChromecast";
-  version = "4.2.0";
+  version = "4.2.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "05h7ncymyh1715v2jkj312qza5qlqrz6yfpgyv4kdf1m07zh7pxh";
+    sha256 = "1nqy9zvzxzncfmmbsj4ccb36gymh4pp1n1l9fdhv8fi0ai9b7dyp";
   };
 
   disabled = !isPy3k;

pkgs/development/python-modules/pypandoc/default.nix

@@ -3,21 +3,21 @@
 
 buildPythonPackage rec {
   pname = "pypandoc";
-  version = "unstable-2018-06-18";
+  version = "1.5";
 
   src = fetchFromGitHub {
     owner = "bebraw";
     repo = pname;
-    rev = "87912f0f17e0a71c1160008df708c876d32e5819";
-    sha256 = "0l6knkxxhmni4lx8hyvbb71svnhza08ivyklqlk5fw637gznc0hx";
+    rev = version;
+    sha256 = "1lpslfns6zxx7b0xr13bzg921lwrj5am8za0b2dviywk6iiib0ld";
   };
 
   postPatch = ''
     # set pandoc path statically
     sed -i '/^__pandoc_path = None$/c__pandoc_path = "${pandoc}/bin/pandoc"' pypandoc/__init__.py
 
-    # Fix tests: requires network access
-    substituteInPlace tests.py --replace "pypandoc.convert(url, 'html')" "'GPL2 license'"
+    # Skip test that requires network access
+    sed -i '/test_basic_conversion_from_http_url/i\\    @unittest.skip\("no network access during checkPhase"\)' tests.py
   '';
 
   preCheck = ''

pkgs/development/python-modules/python-nomad/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "python-nomad";
-  version = "1.1.0";
+  version = "1.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1rf6ad35vg3yi1p4l383xwx0ammdvr1k71bxg93bgcvljypx4cyn";
+    sha256 = "0ivkfdrmb4wpyawvwrgm3jvx6hn49vqjpwbkmkmamigghqqwacx3";
   };
 
   propagatedBuildInputs = [ requests ];

pkgs/development/python-modules/sphinxcontrib-katex/default.nix

@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "sphinxcontrib-katex";
-  version = "0.5.1";
+  version = "0.6.0";
 
   # pkgutil namespaces are broken in nixpkgs (because they can't scan multiple
   # directories). But python2 is EOL, so not supporting it should be ok.
@@ -10,7 +10,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0qssq2qc12rnwb6yhw3xj69cwij3jp3sqzwb6n85qp36g4vxrkb6";
+    sha256 = "1692q3f3z1rsd3nyxd8wrv0vscwcq2gqjbv79c8ws402y3m7y5ni";
   };
 
   propagatedBuildInputs = [ sphinx ];

pkgs/development/python-modules/swagger-ui-bundle/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "swagger-ui-bundle";
-  version = "0.0.5";
+  version = "0.0.6";
 
   src = fetchPypi {
     pname = "swagger_ui_bundle";
     inherit version;
-    sha256 = "0v69v94mzzb63ciwpz3n8jwxqcyll3fsyx087s9k9q543zdqzbh1";
+    sha256 = "1lqxz7q9l2iwf7w11nhw5lnglsh1lgcvq8ydvhabkcc76il3ndy5";
   };
 
   # patch away unused test requirements since package contains no tests