Merge pull request #37250 from dotlambda/python-fixes

Python fixes, cc #36453

pkgs/development/python-modules/allpairspy/default.nix

@@ -0,0 +1,25 @@
+{ lib, buildPythonPackage, fetchPypi, six, pytest }:
+
+buildPythonPackage rec {
+  pname = "allpairspy";
+  version = "2.4.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "9fb7962ee523bd96c5098cd3c97ac1b8eb73021d3df9314657ee9de00f52e034";
+  };
+
+  propagatedBuildInputs = [ six ];
+
+  checkInputs = [ pytest ];
+
+  checkPhase = ''
+    py.test
+  '';
+
+  meta = with lib; {
+    description = "Pairwise test combinations generator";
+    homepage = https://github.com/thombashi/allpairspy;
+    license = licenses.mit;
+  };
+}

pkgs/development/python-modules/bleach/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "bleach";
-  version = "2.1.2";
+  version = "2.1.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "38fc8cbebea4e787d8db55d6f324820c7f74362b70db9142c1ac7920452d1a19";
+    sha256 = "eb7386f632349d10d9ce9d4a838b134d4731571851149f9cc2c05a9a837a9a44";
   };
 
   checkInputs = [ pytest pytestrunner ];
@@ -41,4 +41,4 @@ buildPythonPackage rec {
     license = lib.licenses.asl20;
     maintainers = with lib.maintainers; [ prikhi ];
   };
-}
+}

pkgs/development/python-modules/colander/default.nix

@@ -0,0 +1,21 @@
+{ lib, buildPythonPackage, fetchPypi
+, translationstring, iso8601 }:
+
+buildPythonPackage rec {
+  pname = "colander";
+  version = "1.4";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "e20e9acf190e5711cf96aa65a5405dac04b6e841028fc361d953a9923dbc4e72";
+  };
+
+  propagatedBuildInputs = [ translationstring iso8601 ];
+
+  meta = with lib; {
+    description = "A simple schema-based serialization and deserialization library";
+    homepage = https://docs.pylonsproject.org/projects/colander/en/latest/;
+    license = licenses.free; # http://repoze.org/LICENSE.txt
+    maintainers = with maintainers; [ garbas domenkozar ];
+  };
+}

pkgs/development/python-modules/commonmark/default.nix

@@ -0,0 +1,27 @@
+{ lib, buildPythonPackage, fetchPypi, isPy3k, glibcLocales, future }:
+
+buildPythonPackage rec {
+  pname = "CommonMark";
+  version = "0.7.5";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "4dfbbd1dbc669a9b71a015032b2bbe5c4b019ca8b6ca410d89cf7020de46d2c0";
+  };
+
+  preCheck = ''
+    export LC_ALL="en_US.UTF-8"
+  '';
+
+  # UnicodeEncodeError on Python 2
+  doCheck = isPy3k;
+
+  checkInputs = [  glibcLocales ];
+  propagatedBuildInputs = [ future ];
+
+  meta = with lib; {
+    description = "Python parser for the CommonMark Markdown spec";
+    homepage = https://github.com/rolandshoemaker/CommonMark-py;
+    license = licenses.bsd3;
+  };
+}

pkgs/development/python-modules/credstash/default.nix

@@ -1,15 +1,20 @@
-{ stdenv, buildPythonPackage, fetchPypi, cryptography, boto3, pyyaml, docutils }:
+{ stdenv, buildPythonPackage, fetchPypi, fetchpatch, cryptography, boto3, pyyaml, docutils }:
 
 buildPythonPackage rec {
-  pname    = "credstash";
+  pname = "credstash";
   version = "1.14.0";
-  name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
     sha256 = "718b337f7a6fa001e014386071f05c59900525d0507009126d2fe8d75fe0761d";
   };
 
+  patches = fetchpatch {
+    url = https://github.com/fugue/credstash/pull/178.patch;
+    sha256 = "15ih4h5v63g7qfmqdl4zca147wkcrx8vnsh4ns33001dipcfb5sc";
+    excludes = [ ".travis.yml" ];
+  };
+
   propagatedBuildInputs = [ cryptography boto3 pyyaml docutils ];
 
   # No tests in archive

pkgs/development/python-modules/flake8-debugger/default.nix

@@ -1,15 +1,24 @@
-{ lib, fetchurl, buildPythonPackage, flake8, nose }:
+{ lib, fetchPypi, buildPythonPackage, flake8, pycodestyle, pytestrunner, pytest }:
 
 buildPythonPackage rec {
   pname = "flake8-debugger";
-  name = "${pname}-${version}";
   version = "3.1.0";
-  src = fetchurl {
-    url = "mirror://pypi/f/flake8-debugger/${name}.tar.gz";
+
+  src = fetchPypi {
+    inherit pname version;
     sha256 = "be4fb88de3ee8f6dd5053a2d347e2c0a2b54bab6733a2280bb20ebd3c4ca1d97";
   };
-  buildInputs = [ nose ];
-  propagatedBuildInputs = [ flake8 ];
+
+  nativeBuildInputs = [ pytestrunner ];
+
+  propagatedBuildInputs = [ flake8 pycodestyle ];
+
+  checkInputs = [ pytest ];
+
+  # Tests not included in PyPI tarball
+  # FIXME: Remove when https://github.com/JBKahn/flake8-debugger/pull/15 is merged
+  doCheck = false;
+
   meta = {
     homepage = https://github.com/jbkahn/flake8-debugger;
     description = "ipdb/pdb statement checker plugin for flake8";

pkgs/development/python-modules/hvac/default.nix

@@ -0,0 +1,22 @@
+{ lib, buildPythonPackage, fetchPypi, requests }:
+
+buildPythonPackage rec {
+  pname = "hvac";
+  version = "0.5.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "2c9308334301daee3b5c6d56a032ca2c81eeb97d2777b73d795e201e8d037687";
+  };
+
+  propagatedBuildInputs = [ requests ];
+
+  # Requires running a Vault server
+  doCheck = false;
+
+  meta = with lib; {
+    description = "HashiCorp Vault API client";
+    homepage = https://github.com/ianunruh/hvac;
+    license = licenses.asl20;
+  };
+}

pkgs/development/python-modules/moinmoin/default.nix

@@ -1,13 +1,16 @@
-{ lib, buildPythonPackage, fetchurl, fetchpatch
+{ lib, buildPythonPackage, fetchurl, fetchpatch, isPy3k
 , pytest, werkzeug, pygments
 }:
 
 buildPythonPackage rec {
-  name = "moinmoin-${ver}";
-  ver = "1.9.9";
+  name = "moinmoin";
+  version = "1.9.9";
+
+  # SyntaxError in setup.py
+  disabled = isPy3k;
 
   src = fetchurl {
-    url = "http://static.moinmo.in/files/moin-${ver}.tar.gz";
+    url = "http://static.moinmo.in/files/moin-${version}.tar.gz";
     sha256 = "197ga41qghykmir80ik17f9hjpmixslv3zjgj7bj9qvs1dvdg5s3";
   };
 

pkgs/development/python-modules/odo/default.nix

@@ -37,5 +37,8 @@ buildPythonPackage rec {
     description = "Data migration utilities";
     license = lib.licenses.bsdOriginal;
     maintainers = with lib.maintainers; [ fridh ];
+    # incomaptible with Networkx 2
+    # see https://github.com/blaze/odo/pull/601
+    broken = true;
   };
-}
+}

pkgs/development/python-modules/paypalrestsdk/default.nix

@@ -0,0 +1,20 @@
+{ buildPythonPackage, fetchPypi
+, requests, six, pyopenssl }:
+
+buildPythonPackage rec {
+  pname = "paypalrestsdk";
+  version = "1.13.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "238713208031e8981bf70b3350b3d7f85ed64d34e0f21e4c1184444a546fee7f";
+  };
+
+  propagatedBuildInputs = [ requests six pyopenssl ];
+
+  meta = {
+    homepage = https://developer.paypal.com/;
+    description = "Python APIs to create, process and manage payment";
+    license = "PayPal SDK License";
+  };
+}

pkgs/development/python-modules/pushbullet/default.nix

@@ -0,0 +1,27 @@
+{ lib, buildPythonPackage, fetchPypi
+, requests, websocket_client, python_magic
+, pytest, mock }:
+
+buildPythonPackage rec {
+  pname = "pushbullet.py";
+  version = "0.11.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "aa9dc7bb46e083e3497d46241154f12944a8f540e29d150330ca94db0b453b8d";
+  };
+
+  propagatedBuildInputs = [ requests websocket_client python_magic ];
+
+  checkInputs = [ pytest mock ];
+
+  checkPhase = ''
+    PUSHBULLET_API_KEY="" py.test -k "not test_e2e and not test_auth"
+  '';
+
+  meta = with lib; {
+    description = "A simple python client for pushbullet.com";
+    homepage = https://github.com/randomchars/pushbullet.py;
+    license = licenses.mit;
+  };
+}

pkgs/development/python-modules/pyamf/default.nix

@@ -1,10 +1,12 @@
-{ stdenv, fetchPypi, buildPythonPackage, defusedxml }:
+{ stdenv, fetchPypi, buildPythonPackage, isPy3k, defusedxml }:
 
 buildPythonPackage rec {
-  name = "${pname}-${version}";
   pname = "PyAMF";
   version = "0.8.0";
 
+  # according to setup.py
+  disabled = isPy3k;
+
   src = fetchPypi {
     inherit pname version;
     sha256 = "1r3lp9gkph48g9lijby5rs5daa3lhxs204r14zw4kvp3hf4xcm84";

pkgs/development/python-modules/pyhomematic/default.nix

@@ -14,6 +14,9 @@ buildPythonPackage rec {
     sha256 = "1g181x2mrhxcaswr6vi2m7if97wv4rf2g2pny60334sciga8njfz";
   };
 
+  # Unreliable timing: https://github.com/danielperna84/pyhomematic/issues/126
+  doCheck = false;
+
   meta = with stdenv.lib; {
     description = "Python 3 Interface to interact with Homematic devices";
     homepage = https://github.com/danielperna84/pyhomematic;

pkgs/development/python-modules/python-ctags3/default.nix

@@ -0,0 +1,17 @@
+{ lib, buildPythonPackage, fetchPypi }:
+
+buildPythonPackage rec {
+  pname = "python-ctags3";
+  version = "1.2.4";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "62e1d48a8cd88756767f3f5e3f1b1a81bc84deeb736f0c9480a5b5d066f63c3e";
+  };
+
+  meta = with lib; {
+    description = "Ctags indexing python bindings";
+    homepage = https://github.com/jonashaag/python-ctags3;
+    license = licenses.lgpl3Plus;
+  };
+}

pkgs/development/python-modules/readme_renderer/default.nix

@@ -2,6 +2,7 @@
 , buildPythonPackage
 , fetchPypi
 , pytest
+, CommonMark
 , bleach
 , docutils
 , pygments
@@ -10,18 +11,17 @@
 
 buildPythonPackage rec {
   pname = "readme_renderer";
-  version = "17.2";
-  name = "${pname}-${version}";
+  version = "17.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9deab442963a63a71ab494bf581b1c844473995a2357f4b3228a1df1c8cba8da";
+    sha256 = "82d68175feec897af2a38fe8590778f14c3be5324cc62e3ce5752a9b1e4b60ab";
   };
 
   checkInputs = [ pytest ];
 
   propagatedBuildInputs = [
-    bleach docutils pygments six
+    CommonMark bleach docutils pygments six
   ];
 
   checkPhase = ''
@@ -33,4 +33,4 @@ buildPythonPackage rec {
     homepage = https://github.com/pypa/readme_renderer;
     license = lib.licenses.asl20;
   };
-}
+}

pkgs/development/python-modules/robomachine/default.nix

@@ -1,16 +1,15 @@
-{ stdenv, fetchurl, buildPythonPackage, pyparsing, argparse, robotframework }:
+{ stdenv, fetchPypi, buildPythonPackage, pyparsing, argparse, robotframework, allpairspy }:
 
 buildPythonPackage rec {
-  pname = "robomachine";
+  pname = "RoboMachine";
   version = "0.8.0";
-  name = pname + "-" + version;
 
-  src = fetchurl {
-    url = "mirror://pypi/R/RoboMachine/RoboMachine-0.6.tar.gz";
+  src = fetchPypi {
+    inherit pname version;
     sha256 = "242cfd9be0f7591138eaeba03c9c190f894ce045e1767ab7b90eca330259fc45";
   };
 
-  propagatedBuildInputs = [ pyparsing argparse robotframework ];
+  propagatedBuildInputs = [ pyparsing argparse robotframework allpairspy ];
 
   # Remove Windows .bat files
   postInstall = ''

pkgs/development/python-modules/scikitlearn/default.nix

@@ -21,8 +21,9 @@ buildPythonPackage rec {
   LC_ALL="en_US.UTF-8";
 
   # Disable doctests on OSX: https://github.com/scikit-learn/scikit-learn/issues/10213
+  # Disable doctests everywhere: https://github.com/NixOS/nixpkgs/issues/35436
   checkPhase = ''
-    HOME=$TMPDIR OMP_NUM_THREADS=1 nosetests ${stdenv.lib.optionalString stdenv.isDarwin "--doctest-options=+SKIP"} $out/${python.sitePackages}/sklearn/
+    HOME=$TMPDIR OMP_NUM_THREADS=1 nosetests --doctest-options=+SKIP $out/${python.sitePackages}/sklearn/
   '';
 
   meta = with stdenv.lib; {