From 9953edaf75a34ddb3f4ab360d71502d829dc0fc5 Mon Sep 17 00:00:00 2001
From: Roman Volosatovs <rvolosatovs@riseup.net>
Date: Tue, 12 Jun 2018 18:26:20 +0200
Subject: [PATCH 001/139] sshd: Support more ssh-keygen parameters

---
 nixos/modules/services/networking/ssh/sshd.nix | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix
index 902e759f3a3..9a6ac024bd4 100644
--- a/nixos/modules/services/networking/ssh/sshd.nix
+++ b/nixos/modules/services/networking/ssh/sshd.nix
@@ -198,6 +198,10 @@ in
           [ { type = "rsa"; bits = 4096; path = "/etc/ssh/ssh_host_rsa_key"; }
             { type = "ed25519"; path = "/etc/ssh/ssh_host_ed25519_key"; }
           ];
+        example =
+          [ { type = "rsa"; bits = 4096; path = "/etc/ssh/ssh_host_rsa_key"; rounds = 100; openSSHFormat = true; }
+            { type = "ed25519"; path = "/etc/ssh/ssh_host_ed25519_key"; rounds = 100; comment = "key comment"; }
+          ];
         description = ''
           NixOS can automatically generate SSH host keys.  This option
           specifies the path, type and size of each key.  See
@@ -356,7 +360,14 @@ in
 
                 ${flip concatMapStrings cfg.hostKeys (k: ''
                   if ! [ -f "${k.path}" ]; then
-                      ssh-keygen -t "${k.type}" ${if k ? bits then "-b ${toString k.bits}" else ""} -f "${k.path}" -N ""
+                      ssh-keygen \
+                        -t "${k.type}" \
+                        ${if k ? bits then "-b ${toString k.bits}" else ""} \
+                        ${if k ? rounds then "-a ${toString k.rounds}" else ""} \
+                        ${if k ? comment then "-C '${k.comment}'" else ""} \
+                        ${if k ? openSSHFormat && k.openSSHFormat then "-o" else ""} \
+                        -f "${k.path}" \
+                        -N ""
                   fi
                 '')}
               '';

From 1846a85b77c60c2f72c95ee63f7f43a5557f8a48 Mon Sep 17 00:00:00 2001
From: Roman Volosatovs <rvolosatovs@riseup.net>
Date: Tue, 12 Jun 2018 18:30:53 +0200
Subject: [PATCH 002/139] sshd: Add issue references to
 services.openssh.authorizedKeysFiles

---
 nixos/modules/services/networking/ssh/sshd.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix
index 9a6ac024bd4..77673b5287b 100644
--- a/nixos/modules/services/networking/ssh/sshd.nix
+++ b/nixos/modules/services/networking/ssh/sshd.nix
@@ -413,6 +413,9 @@ in
         unixAuth = cfg.passwordAuthentication;
       };
 
+    # These values are merged with the ones defined externally, see:
+    # https://github.com/NixOS/nixpkgs/pull/10155
+    # https://github.com/NixOS/nixpkgs/pull/41745
     services.openssh.authorizedKeysFiles =
       [ ".ssh/authorized_keys" ".ssh/authorized_keys2" "/etc/ssh/authorized_keys.d/%u" ];
 

From d62a3558843daf869ecd1a608cfba7a7439e1b30 Mon Sep 17 00:00:00 2001
From: Matthieu Coudron <mattator@gmail.com>
Date: Thu, 14 Jun 2018 10:25:14 +0900
Subject: [PATCH 003/139] pythonPackages.wcwith: 0.1.6 -> 0.1.7

---
 .../python-modules/wcwidth/default.nix        | 26 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            | 25 +-----------------
 2 files changed, 27 insertions(+), 24 deletions(-)
 create mode 100644 pkgs/development/python-modules/wcwidth/default.nix

diff --git a/pkgs/development/python-modules/wcwidth/default.nix b/pkgs/development/python-modules/wcwidth/default.nix
new file mode 100644
index 00000000000..fa993c593e1
--- /dev/null
+++ b/pkgs/development/python-modules/wcwidth/default.nix
@@ -0,0 +1,26 @@
+{ stdenv, fetchurl, buildPythonPackage }:
+
+buildPythonPackage rec {
+    name = "wcwidth-${version}";
+    version = "0.1.7";
+
+    src = fetchurl {
+      url = "mirror://pypi/w/wcwidth/${name}.tar.gz";
+      sha256 = "0pn6dflzm609m4r3i8ik5ni9ijjbb5fa3vg1n7hn6vkd49r77wrx";
+    };
+
+    # Checks fail due to missing tox.ini file:
+    doCheck = false;
+
+    meta = with stdenv.lib; {
+      description = "Measures number of Terminal column cells of wide-character codes";
+      longDescription = ''
+        This API is mainly for Terminal Emulator implementors -- any Python
+        program that attempts to determine the printable width of a string on
+        a Terminal. It is implemented in python (no C library calls) and has
+        no 3rd-party dependencies.
+      '';
+      homepage = https://github.com/jquast/wcwidth;
+      license = licenses.mit;
+    };
+  }
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 5c694f4d801..7fe5f9f9ffc 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -14845,30 +14845,7 @@ EOF
     imagemagick = pkgs.imagemagickBig;
   };
 
-  wcwidth = buildPythonPackage rec {
-    name = "wcwidth-${version}";
-    version = "0.1.6";
-
-    src = pkgs.fetchurl {
-      url = "mirror://pypi/w/wcwidth/${name}.tar.gz";
-      sha256 = "02wjrpf001gjdjsaxxbzcwfg19crlk2dbddayrfc2v06f53yrcyw";
-    };
-
-    # Checks fail due to missing tox.ini file:
-    doCheck = false;
-
-    meta = {
-      description = "Measures number of Terminal column cells of wide-character codes";
-      longDescription = ''
-        This API is mainly for Terminal Emulator implementors -- any Python
-        program that attempts to determine the printable width of a string on
-        a Terminal. It is implemented in python (no C library calls) and has
-        no 3rd-party dependencies.
-      '';
-      homepage = https://github.com/jquast/wcwidth;
-      license = licenses.mit;
-    };
-  };
+  wcwidth = callPackage ../development/python-modules/wcwidth { };
 
   web = buildPythonPackage rec {
     version = "0.37";

From bb47fd0fece6cc95bbf0791d38af4929a6e2147c Mon Sep 17 00:00:00 2001
From: Matthieu Coudron <mattator@gmail.com>
Date: Thu, 14 Jun 2018 10:25:58 +0900
Subject: [PATCH 004/139] python3Packages.cmd2: 0.8.0 -> 0.9.1

---
 .../python-modules/cmd2/default.nix            | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/python-modules/cmd2/default.nix b/pkgs/development/python-modules/cmd2/default.nix
index 5ffa51def0d..e83fd4163e4 100644
--- a/pkgs/development/python-modules/cmd2/default.nix
+++ b/pkgs/development/python-modules/cmd2/default.nix
@@ -1,17 +1,15 @@
-{ stdenv, fetchPypi, buildPythonPackage, pythonOlder
-, pyperclip, six, pyparsing, vim
+{ stdenv, fetchPypi, buildPythonPackage, pythonOlder, isPy3k
+, pyperclip, six, pyparsing, vim, wcwidth, colorama
 , contextlib2 ? null, subprocess32 ? null
 , pytest, mock, which, fetchFromGitHub, glibcLocales
 }:
 buildPythonPackage rec {
   pname = "cmd2";
-  version = "0.8.0";
+  version = "0.9.1";
 
-  src = fetchFromGitHub {
-    owner = "python-cmd2";
-    repo = "cmd2";
-    rev = version;
-    sha256 = "0nw2b7n7zg51bc3glxw0l9fn91mwjnjshklhmxhyvjbsg7khf64z";
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1wpw4f9zix30hfncm0hwxjjdx78zq26x3r8s9nvsq9vnxf41xb49";
   };
 
   LC_ALL="en_US.UTF-8";
@@ -31,14 +29,16 @@ buildPythonPackage rec {
     py.test -k 'not test_path_completion_user_expansion'
   '';
   doCheck = !stdenv.isDarwin;
+  disabled = !isPy3k;
 
   propagatedBuildInputs = [
+    colorama
     pyperclip
     six
     pyparsing
+    wcwidth
   ]
   ++ stdenv.lib.optional (pythonOlder "3.5") contextlib2
-  ++ stdenv.lib.optional (pythonOlder "3.0") subprocess32
   ;
 
   meta = with stdenv.lib; {

From 65b15ba6a96760125cc3984893f587af1ffacaac Mon Sep 17 00:00:00 2001
From: Matthieu Coudron <mattator@gmail.com>
Date: Fri, 15 Jun 2018 03:42:45 +0900
Subject: [PATCH 005/139] pythonPackages.cmd2: keep 0.8 version

...which is the last one with python2 support until ~ august 2018
---
 pkgs/development/python-modules/cmd2/old.nix | 49 ++++++++++++++++++++
 pkgs/top-level/python-packages.nix           |  4 +-
 2 files changed, 52 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/development/python-modules/cmd2/old.nix

diff --git a/pkgs/development/python-modules/cmd2/old.nix b/pkgs/development/python-modules/cmd2/old.nix
new file mode 100644
index 00000000000..5ffa51def0d
--- /dev/null
+++ b/pkgs/development/python-modules/cmd2/old.nix
@@ -0,0 +1,49 @@
+{ stdenv, fetchPypi, buildPythonPackage, pythonOlder
+, pyperclip, six, pyparsing, vim
+, contextlib2 ? null, subprocess32 ? null
+, pytest, mock, which, fetchFromGitHub, glibcLocales
+}:
+buildPythonPackage rec {
+  pname = "cmd2";
+  version = "0.8.0";
+
+  src = fetchFromGitHub {
+    owner = "python-cmd2";
+    repo = "cmd2";
+    rev = version;
+    sha256 = "0nw2b7n7zg51bc3glxw0l9fn91mwjnjshklhmxhyvjbsg7khf64z";
+  };
+
+  LC_ALL="en_US.UTF-8";
+
+  postPatch = stdenv.lib.optional stdenv.isDarwin ''
+    # Fake the impure dependencies pbpaste and pbcopy
+    mkdir bin
+    echo '#/bin/sh' > bin/pbpaste
+    echo '#/bin/sh' > bin/pbcopy
+    chmod +x bin/{pbcopy,pbpaste}
+    export PATH=$(realpath bin):$PATH
+  '';
+
+  checkInputs= [ pytest mock which vim glibcLocales ];
+  checkPhase = ''
+    # test_path_completion_user_expansion might be fixed in the next release
+    py.test -k 'not test_path_completion_user_expansion'
+  '';
+  doCheck = !stdenv.isDarwin;
+
+  propagatedBuildInputs = [
+    pyperclip
+    six
+    pyparsing
+  ]
+  ++ stdenv.lib.optional (pythonOlder "3.5") contextlib2
+  ++ stdenv.lib.optional (pythonOlder "3.0") subprocess32
+  ;
+
+  meta = with stdenv.lib; {
+    description = "Enhancements for standard library's cmd module";
+    homepage = https://github.com/python-cmd2/cmd2;
+    maintainers = with maintainers; [ teto ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 7fe5f9f9ffc..e16bb977fae 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -9142,7 +9142,9 @@ in {
    cachetools_1 = callPackage ../development/python-modules/cachetools/1.nix {};
    cachetools = callPackage ../development/python-modules/cachetools {};
 
-  cmd2 = callPackage ../development/python-modules/cmd2 {};
+  cmd2_8 = callPackage ../development/python-modules/cmd2/old.nix {};
+  cmd2_9 = callPackage ../development/python-modules/cmd2 {};
+  cmd2 = if isPy27 then self.cmd2_8 else self.cmd2_9;
 
  warlock = buildPythonPackage rec {
    name = "warlock-${version}";

From 8b3fb83160c68209e07914ac2201eb6fce9d727b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bastian=20K=C3=B6cher?= <git@kchr.de>
Date: Tue, 3 Jul 2018 15:18:07 +0200
Subject: [PATCH 006/139] services.plasma5: Update start menu with an
 activationScript

To update the plasma start menu `kbuildsyscoca5` needs to be executed.
There are several people complaining about missing applications in their
plasma start menu.
This patch adds a activationScript for plasma, that runs
`kbuildsyscoca5` for each user that has `isNormalUser` == `true`.
---
 nixos/modules/services/x11/desktop-managers/plasma5.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/nixos/modules/services/x11/desktop-managers/plasma5.nix b/nixos/modules/services/x11/desktop-managers/plasma5.nix
index 91d091d7d7e..4b9e561d53c 100644
--- a/nixos/modules/services/x11/desktop-managers/plasma5.nix
+++ b/nixos/modules/services/x11/desktop-managers/plasma5.nix
@@ -221,6 +221,11 @@ in
       security.pam.services.sddm.enableKwallet = true;
       security.pam.services.slim.enableKwallet = true;
 
+      # Update the start menu for each user that has `isNormalUser` set.
+      system.activationScripts.plasmaSetup = stringAfter [ "users" "groups" ]
+        (concatStringsSep "\n"
+          (mapAttrsToList (name: value: "${pkgs.su}/bin/su ${name} -c kbuildsycoca5")
+            (filterAttrs (n: v: v.isNormalUser) config.users.users)));
     })
   ];
 

From 4106de56d080761975c204215e75b5b632ae7397 Mon Sep 17 00:00:00 2001
From: Samuel Dionne-Riel <samuel@dionne-riel.com>
Date: Sat, 7 Jul 2018 22:25:23 -0400
Subject: [PATCH 007/139] stage-1: Fixes use of stripDirs.

---
 nixos/modules/system/boot/stage-1.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix
index 6756f68cdf7..b6a7081b896 100644
--- a/nixos/modules/system/boot/stage-1.nix
+++ b/nixos/modules/system/boot/stage-1.nix
@@ -164,7 +164,7 @@ let
 
       # Strip binaries further than normal.
       chmod -R u+w $out
-      stripDirs "lib bin" "-s"
+      stripDirs "$STRIP" "lib bin" "-s"
 
       # Run patchelf to make the programs refer to the copied libraries.
       find $out/bin $out/lib -type f | while read i; do

From f8790e0156dae0c04f922a172bfb9d9a7266c172 Mon Sep 17 00:00:00 2001
From: Samuel Dionne-Riel <samuel@dionne-riel.com>
Date: Sat, 7 Jul 2018 22:25:38 -0400
Subject: [PATCH 008/139] openjdk-*: Fixes use of stripDirs.

---
 pkgs/development/compilers/openjdk/10.nix | 2 +-
 pkgs/development/compilers/openjdk/8.nix  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/openjdk/10.nix b/pkgs/development/compilers/openjdk/10.nix
index 7882fa49b07..9e8c7e20da1 100644
--- a/pkgs/development/compilers/openjdk/10.nix
+++ b/pkgs/development/compilers/openjdk/10.nix
@@ -142,7 +142,7 @@ let
 
     # FIXME: this is unnecessary once the multiple-outputs branch is merged.
     preFixup = ''
-      prefix=$jre stripDirs "$stripDebugList" "''${stripDebugFlags:--S}"
+      prefix=$jre stripDirs "$STRIP" "$stripDebugList" "''${stripDebugFlags:--S}"
       patchELF $jre
       propagatedBuildInputs+=" $jre"
 
diff --git a/pkgs/development/compilers/openjdk/8.nix b/pkgs/development/compilers/openjdk/8.nix
index 9db5e8ba23c..f71af901763 100644
--- a/pkgs/development/compilers/openjdk/8.nix
+++ b/pkgs/development/compilers/openjdk/8.nix
@@ -206,7 +206,7 @@ let
 
     # FIXME: this is unnecessary once the multiple-outputs branch is merged.
     preFixup = ''
-      prefix=$jre stripDirs "$stripDebugList" "''${stripDebugFlags:--S}"
+      prefix=$jre stripDirs "$STRIP" "$stripDebugList" "''${stripDebugFlags:--S}"
       patchELF $jre
       propagatedBuildInputs+=" $jre"
 

From cd4e54b3a11451fd5e03297790b3d3a00a08e188 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Mon, 9 Jul 2018 14:51:05 +0800
Subject: [PATCH 009/139] sddm: use tmpfiles.d to wipe QML cache

---
 .../services/x11/display-managers/sddm.nix    | 26 +++++++++++--------
 1 file changed, 15 insertions(+), 11 deletions(-)

diff --git a/nixos/modules/services/x11/display-managers/sddm.nix b/nixos/modules/services/x11/display-managers/sddm.nix
index 8db7414e811..426b899586f 100644
--- a/nixos/modules/services/x11/display-managers/sddm.nix
+++ b/nixos/modules/services/x11/display-managers/sddm.nix
@@ -19,17 +19,6 @@ let
 
   Xsetup = pkgs.writeScript "Xsetup" ''
     #!/bin/sh
-
-    # Prior to Qt 5.9.2, there is a QML cache invalidation bug which sometimes
-    # strikes new Plasma 5 releases. If the QML cache is not invalidated, SDDM
-    # will segfault without explanation. We really tore our hair out for awhile
-    # before finding the bug:
-    # https://bugreports.qt.io/browse/QTBUG-62302
-    # We work around the problem by deleting the QML cache before startup. It
-    # will be regenerated, causing a small but perceptible delay when SDDM
-    # starts.
-    rm -fr /var/lib/sddm/.cache/sddm-greeter/qmlcache
-
     ${cfg.setupScript}
   '';
 
@@ -285,5 +274,20 @@ in
     # To enable user switching, allow sddm to allocate TTYs/displays dynamically.
     services.xserver.tty = null;
     services.xserver.display = null;
+
+    systemd.tmpfiles.rules = [
+      # Prior to Qt 5.9.2, there is a QML cache invalidation bug which sometimes
+      # strikes new Plasma 5 releases. If the QML cache is not invalidated, SDDM
+      # will segfault without explanation. We really tore our hair out for awhile
+      # before finding the bug:
+      # https://bugreports.qt.io/browse/QTBUG-62302
+      # We work around the problem by deleting the QML cache before startup.
+      # This was supposedly fixed in Qt 5.9.2 however it has been reported with
+      # 5.10 and 5.11 as well. The initial workaround was to delete the directory
+      # in the Xsetup script but that doesn't do anything.
+      # Instead we use tmpfiles.d to ensure it gets wiped.
+      # This causes a small but perceptible delay when SDDM starts.
+      "e ${config.users.users.sddm.home}/.cache - - - 0"
+    ];
   };
 }

From ca370302bcff9bd26d118fb6beabda3969189d74 Mon Sep 17 00:00:00 2001
From: taku0 <mxxouy6x3m_github@tatapa.org>
Date: Wed, 11 Jul 2018 03:12:18 +0900
Subject: [PATCH 010/139] thunderbird-bin: 52.9.0 -> 52.9.1

---
 .../thunderbird-bin/release_sources.nix       | 474 +++++++++---------
 1 file changed, 237 insertions(+), 237 deletions(-)

diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
index 05c372d0780..047b1659642 100644
--- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
+++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
@@ -1,595 +1,595 @@
 {
-  version = "52.9.0";
+  version = "52.9.1";
   sources = [
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-x86_64/ar/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-x86_64/ar/thunderbird-52.9.1.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha512 = "4585aabb08aaf049622f7cc8b485fb6a28ffd26759c760dab75af679a434d3ea7f356e5255a990f22f362e1506722207c2c2b866718a695dd651a53923a37fb2";
+      sha512 = "9384c43cbac7d6b88fa160e22fb21e6f4250276b46d3fc0322dca45a6b5ebacfc39a431b54d34262a32f2a7cc9130b68b6dc4b636a737ecb7132e077592882a5";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-x86_64/ast/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-x86_64/ast/thunderbird-52.9.1.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha512 = "f8558b2b833be94accd96ccd62b9b1fd8f837d11f9f53a514bf19b2007af4c69afac762f091c4116ec4b7ceadc3538183c2370b4b485a430d3b975aa94de0027";
+      sha512 = "b1d0b26dc21c4487f016c60aa8560ff34c868c6e617040f963ff9e76b859d7d265cf529c0d70fcb736aa946ad50b1a0cae0dd66df1594e102a85cfa489b07358";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-x86_64/be/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-x86_64/be/thunderbird-52.9.1.tar.bz2";
       locale = "be";
       arch = "linux-x86_64";
-      sha512 = "78e259db1a9b73178fe2ffcc8ee05c5b1324513a4ea0d564a0d702d42aa2bb87f990f780021c19d3c880922ea443b8925d71370fd31d4577e985f6dd1d2af11b";
+      sha512 = "635ad3d57463eb51830dfb66871258b69bcfcd9ed0c2b38956a25db242905113a6604812a6d6aa1778dde1783595e2b4cb6b3a51f48af6f6740e6613ba78adf7";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-x86_64/bg/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-x86_64/bg/thunderbird-52.9.1.tar.bz2";
       locale = "bg";
       arch = "linux-x86_64";
-      sha512 = "783fe76fb9c34b47a41ea625f31a66e047fc37a4df521c74628d785cdca2fe8c06a7fac1fa1a3cdb5f782c1acd79862317f19ee1597350c991881bde682061ef";
+      sha512 = "573f0b63a16f62662958ff1884a2cf76436242f377258f39ea254732aaa4d1f358ee651b2e4f5eb2cd3c20f69ad6b6ea2bc6985fc3d99e23edeb75d3ca55ba27";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-x86_64/bn-BD/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-x86_64/bn-BD/thunderbird-52.9.1.tar.bz2";
       locale = "bn-BD";
       arch = "linux-x86_64";
-      sha512 = "bcc80e20e418f676936335ff0aca9d542ab6563d678e8f986373b86aba160be8a815bef28a1b3af70a54047d857bf2f09b1cd7e7926d32e8ff41b790bfbbfd61";
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       locale = "sv-SE";
       arch = "linux-i686";
-      sha512 = "0bc5cf65d0d3baecc6b611107b595422dce5c7fda51465545a730b7499bac7419b8b914a9731fb54a3e197bd150d87954c94281a0942d0a1f44b1e39e2312bb8";
+      sha512 = "3555a2d623ece9921bd6acbff45459da7a51de28494f0915639c76066b3b3bf91279716f2c42b5e5d78d09216a6fe6f5be88ab4dba1d2172852ca51d93a634b6";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-i686/ta-LK/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-i686/ta-LK/thunderbird-52.9.1.tar.bz2";
       locale = "ta-LK";
       arch = "linux-i686";
-      sha512 = "c326294f7d0d6b016bdd468b9b24a87f2a874f7773388213f55e9001f4a7b0fe1c21ffaf08efdb9286590308a413b821a61c567e79408d5e9851299b992366c7";
+      sha512 = "203bb717b4fa77522dcee2a85cf0c0d8997abc6ac565ad908ab4eba8f7bb37e848fb94a0526c0fd8360569c9cf3c98cb82196e38cd930b11d82cad6cd88d8f5d";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-i686/tr/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-i686/tr/thunderbird-52.9.1.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha512 = "2b850e90127c7dff0bc4a937a5a1fcdeee0d855be1cc484713db210d7e1fe6991869841da79dc859e9b01528a3c5186965fdd78b4b21bf14714af09caffa2acc";
+      sha512 = "214b140e3c18a2fd4b936558f4bb80441bec9d2afc79e0a949365d2e20b3fa1a092aab332b307c674b7a1cd3822e428459992fdfa5f56b534733021e5fcc11c9";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-i686/uk/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-i686/uk/thunderbird-52.9.1.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha512 = "9e249bf0cc84218c5e59a0e4f026650975a49ba1bc49955802d86e348fca437619455e90472a6e75b3489f8a5c13f8dca44567a5b6af4bb709500600ba44be7b";
+      sha512 = "28a003f1c5c0135a978187e68779500caff1eed42b4da846cd2d5025835fe80ac6ef9cb0424d4a4bd339680666d9a2ca2526b46ffd9ba6b5b0bb725c5c4a7e71";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-i686/vi/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-i686/vi/thunderbird-52.9.1.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha512 = "4bfd348a419e59a4c1665c99122e9b8fb9d768b7fead8dc3f5576bcb7d24f915da243f6fb31a233eec07894806807966c07234add2d8a48a6439c488358f1c95";
+      sha512 = "e2e79d972802b9c9b6319e147b741814f63dc7c5ecb663461483a5fcec45184c9a245752486f4411d961cf7d4da3ad41aeeb52364605ed78058bf53826fb0667";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-i686/zh-CN/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-i686/zh-CN/thunderbird-52.9.1.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha512 = "caefc3ff5cf38dd792daecfb2c6c5c8789ba4f5cf5e965b5e542b7b9605c8c89a2a3d86a330aa497d5984931f9b4daaedf4fc0c8bd9d16c42f2d3fa973ee8967";
+      sha512 = "05554421534038c4a02cefc68ee9e116d15aa8b607be06de2be7cb7ef794157f6b01533f5a670d739284632faea10b374ad6912f6c332ca4fd5f0e8d0346efe8";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-i686/zh-TW/thunderbird-52.9.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.1/linux-i686/zh-TW/thunderbird-52.9.1.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha512 = "df930968d97d74ae4ccbbb10e83c65e59254a4669887b5ad5aa303903ad0180a61ad9e7801817d3a6994714004c6391f96ff0335583ed344a8881c9b3baf55a4";
+      sha512 = "e2b3081e08f87891a0559456fc74d8d3647d49cd14176abd5155aa8ca5d1e1394638386c6c27b433e581d539ac76d151e37dd4942df2e8646134a0218ef54e77";
     }
     ];
 }

From a1151359dd2dc7ca3e842aa968c5bbc49e8cec92 Mon Sep 17 00:00:00 2001
From: taku0 <mxxouy6x3m_github@tatapa.org>
Date: Wed, 11 Jul 2018 03:12:46 +0900
Subject: [PATCH 011/139] thunderbird: 52.9.0 -> 52.9.1

---
 .../networking/mailreaders/thunderbird/default.nix            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/mailreaders/thunderbird/default.nix b/pkgs/applications/networking/mailreaders/thunderbird/default.nix
index 43684c89730..92161164485 100644
--- a/pkgs/applications/networking/mailreaders/thunderbird/default.nix
+++ b/pkgs/applications/networking/mailreaders/thunderbird/default.nix
@@ -22,11 +22,11 @@ let
   wrapperTool = if enableGTK3 then wrapGAppsHook else makeWrapper;
 in stdenv.mkDerivation rec {
   name = "thunderbird-${version}";
-  version = "52.9.0";
+  version = "52.9.1";
 
   src = fetchurl {
     url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz";
-    sha512 = "30jv4r8yh270dynqiwlc0yf52f6bka366l48rsppz5nqdb9jvxz04vghhcrp832wrmhd9z6r4b09yb1syhg7n3sl7zsjj2gq1yblhi1";
+    sha512 = "0ipvhllvlkcjshf2h938d531wpgnhbvdw1k088iazqamb3vrspxpfb4dhfrxvff995nym0gs7j5wa6bjd36nm4wajlabs5i6r80ms0d";
   };
 
   # New sed no longer tolerates this mistake.

From 6f72b636019031de5bca89c63fc1a00a8b3d0768 Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sat, 7 Jul 2018 20:26:28 +0200
Subject: [PATCH 012/139] nixos/nixos-option: don't abort in case of evaluation
 errors
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

When running e.g. `nixos-option boot.kernelPackages` I get an output
like this on the current unstable channel (18.09pre144959.be1461fc0ab):

```
$ nixos-option boot.kernelPackages
Value:
*exit 1*
```

This is fairly counter-intuitive as I have no clue what might went
wrong. `strace` delivers an output like this:

```
read(3, "error: Package \342\200\230cryptodev-linu"..., 128) = 128
read(3, "ux/cryptodev/default.nix:22 is m"..., 128) = 128
read(3, "lowBroken = true; }\nin configura"..., 128) = 128
read(3, "you can add\n  { allowBroken = tr"..., 128) = 128
read(3, "n)\n", 128)                    = 3
read(3, "", 128)                        = 0
```

`nixos-option` evaluates the system config using `nix-instantiate` which
might break when the evaluation fails (e.g. due to broken or unfree
packages that are prohibited to evaluate by default). The script aborts
due to the shebang `@shell@ -e`.

In order to ensure that no unexpected
behavior occurs due to removing `-e` from the interpreter the easiest
way to work around this was to wrap `nix-instantiate` in `evalNix()`
with a `set +e`. The function checks the success of the evaluation with
`$?` in the end. Additionally `evalNix` shouldn't break, if one
evaluation (e.g. the values that contain a package set by default) to
return additional information like a description.

With the change `nixos-option boot.kernelPackages` delivers the
following output for me:

```
Value:
error: Package ‘cryptodev-linux-1.9-4.14.52’ in /nix/store/47z2s8cwppymmgzw6n7pbcashikyk5jk-nixos/nixos/pkgs/os-specific/linux/cryptodev/default.nix:22 is marked as broken, refusing to evaluate.

Default:
{ __unfix__ = <LAMBDA>; acpi_call = <CODE>; amdgpu-pro = <CODE>; ati_drivers_x11 = <CODE>; batman_adv = <CODE>; bbswitch = <CODE>; bcc = <CODE>; beegfs-module = <CODE>; blcr = <CODE>; broadcom_sta = <CODE>; callPackage = <CODE>; cpupower = <CODE>; cryptodev = <CODE>; dpdk = <CODE>; e1000e = <CODE>; ena = <CODE>; evdi = <CODE>; exfat-nofuse = <CODE>; extend = <CODE>; facetimehd = <CODE>; fusionio-vsl = <CODE>; hyperv-daemons = <CODE>; ixgbevf = <CODE>; jool = <CODE>; kernel = <CODE>; lttng-modules = <CODE>; mba6x_bl = <CODE>; mwprocapture = <CODE>; mxu11x0 = <CODE>; ndiswrapper = <CODE>; netatop = <CODE>; nvidiaPackages = <CODE>; nvidia_x11 = <CODE>; nvidia_x11_beta = <CODE>; nvidia_x11_legacy304 = <CODE>; nvidia_x11_legacy340 = <CODE>; nvidiabl = <CODE>; odp-dpdk = <CODE>; openafs = <CODE>; openafs_1_8 = <CODE>; perf = <CODE>; phc-intel = <CODE>; pktgen = <CODE>; ply = <CODE>; prl-tools = <CODE>; recurseForDerivations = true; rtl8192eu = <CODE>; rtl8723bs = <CODE>; rtl8812au = <CODE>; rtl8814au = <CODE>; rtlwifi_new = <CODE>; sch_cake = <CODE>; spl = <CODE>; splLegacyCrypto = <CODE>; splStable = <CODE>; splUnstable = <CODE>; stdenv = <CODE>; sysdig = <CODE>; systemtap = <CODE>; tbs = <CODE>; tmon = <CODE>; tp_smapi = <CODE>; usbip = <CODE>; v4l2loopback = <CODE>; v86d = <CODE>; vhba = <CODE>; virtualbox = <CODE>; virtualboxGuestAdditions = <CODE>; wireguard = <CODE>; x86_energy_perf_policy = <CODE>; zfs = <CODE>; zfsLegacyCrypto = <CODE>; zfsStable = <CODE>; zfsUnstable = <CODE>; }

Example:
{ _type = "literalExample"; text = "pkgs.linuxPackages_2_6_25"; }

Description:

"This option allows you to override the Linux kernel used by\nNixOS. Since things like external kernel module packages are\ntied to the kernel you're using, it also overrides those.\nThis option is a function that takes Nixpkgs as an argument\n(as a convenience), and returns an attribute set containing at\nthe very least an attribute <varname>kernel</varname>.\nAdditional attributes may be needed depending on your\nconfiguration. For instance, if you use the NVIDIA X driver,\nthen it also needs to contain an attribute\n<varname>nvidia_x11</varname>.\n"

Declared by:
  "/nix/var/nix/profiles/per-user/root/channels/nixos/nixpkgs/nixos/modules/system/boot/kernel.nix"

Defined by:
  "/home/ma27/Projects/nixos-config/system/boot.nix"
```
---
 nixos/modules/installer/tools/nixos-option.sh | 12 ++++++++++--
 1 file changed, 10 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/installer/tools/nixos-option.sh b/nixos/modules/installer/tools/nixos-option.sh
index 5141f3cd51c..3f1e591b97b 100644
--- a/nixos/modules/installer/tools/nixos-option.sh
+++ b/nixos/modules/installer/tools/nixos-option.sh
@@ -16,6 +16,7 @@ verbose=false
 nixPath=""
 
 option=""
+exit_code=0
 
 argfun=""
 for arg; do
@@ -74,8 +75,13 @@ fi
 #############################
 
 evalNix(){
+  # disable `-e` flag, it's possible that the evaluation of `nix-instantiate` fails (e.g. due to broken pkgs)
+  set +e
   result=$(nix-instantiate ${nixPath:+$nixPath} - --eval-only "$@" 2>&1)
-  if test $? -eq 0; then
+  exit_code=$?
+  set -e
+
+  if test $exit_code -eq 0; then
       cat <<EOF
 $result
 EOF
@@ -87,7 +93,7 @@ EOF
 ' <<EOF
 $result
 EOF
-      return 1;
+    exit_code=1
   fi
 }
 
@@ -317,3 +323,5 @@ else
     echo $result
   fi
 fi
+
+exit $exit_code

From 4d209dcb153a0679a8c38e2c359ec9d8cf9b61f8 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Thu, 12 Jul 2018 16:08:13 +0300
Subject: [PATCH 013/139] percona-xtrabackup: 2.4.9 -> 2.4.12

---
 .../backup/percona-xtrabackup/default.nix     | 20 +++++++++----------
 pkgs/top-level/all-packages.nix               |  1 +
 2 files changed, 10 insertions(+), 11 deletions(-)

diff --git a/pkgs/tools/backup/percona-xtrabackup/default.nix b/pkgs/tools/backup/percona-xtrabackup/default.nix
index 6899ba88a22..a1c53dcd97f 100644
--- a/pkgs/tools/backup/percona-xtrabackup/default.nix
+++ b/pkgs/tools/backup/percona-xtrabackup/default.nix
@@ -1,41 +1,39 @@
 { stdenv, fetchFromGitHub, cmake, pkgconfig
-, boost, bison, curl, ncurses, openssl, readline, xxd
+, boost, bison, curl, ncurses, openssl, xxd
 , libaio, libev, libgcrypt, libgpgerror, libtool, zlib
 }:
 
 stdenv.mkDerivation rec {
   name = "percona-xtrabackup-${version}";
-  version = "2.4.9";
+  version = "2.4.12";
 
   src = fetchFromGitHub {
     owner = "percona";
     repo = "percona-xtrabackup";
     rev = name;
-    sha256 = "11w87wj2jasrnygzjg3b59q9x0m6lhyg1wzdvclmgbmqsk9bvqv4";
+    sha256 = "1w17v2c677b3vfnm81bs63kjbfiin7f12wl9fbgp83hfpyx5msan";
   };
 
   nativeBuildInputs = [ cmake pkgconfig ];
 
   buildInputs = [
-    boost bison curl ncurses openssl readline xxd
+    boost bison curl ncurses openssl xxd
     libaio libev libgcrypt libgpgerror libtool zlib
   ];
 
   cmakeFlags = [
     "-DBUILD_CONFIG=xtrabackup_release"
     "-DINSTALL_MYSQLTESTDIR=OFF"
-    "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
+    "-DWITH_BOOST=system"
     "-DWITH_SSL=system"
     "-DWITH_ZLIB=system"
-    "-DWITH_MECAB=system"
-    "-DWITH_EXTRA_CHARSETS=all"
-    "-DWITH_INNODB_MEMCACHED=1"
     "-DWITH_MAN_PAGES=OFF"
-    "-DWITH_HTML_DOCS=OFF"
-    "-DWITH_LATEX_DOCS=OFF"
-    "-DWITH_PDF_DOCS=OFF"
   ];
 
+  postInstall = ''
+    rm -r "$out"/lib/plugin/debug
+  '';
+
   meta = with stdenv.lib; {
     description = "Non-blocking backup tool for MySQL";
     homepage = http://www.percona.com/software/percona-xtrabackup;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a52db70835f..74cdc46ff57 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4364,6 +4364,7 @@ with pkgs;
   pepper = callPackage ../tools/admin/salt/pepper { };
 
   percona-xtrabackup = callPackage ../tools/backup/percona-xtrabackup {
+    stdenv = overrideCC stdenv gcc5;
     boost = boost159;
   };
 

From 5dc1d746cf4b09a61f3364b2eb25b5eb11aa57a9 Mon Sep 17 00:00:00 2001
From: Tad Fisher <tadfisher@gmail.com>
Date: Thu, 12 Jul 2018 12:03:56 -0700
Subject: [PATCH 014/139] zoom-us: fix runtime qt environment

---
 .../instant-messengers/zoom-us/default.nix    | 31 +++++++++++--------
 1 file changed, 18 insertions(+), 13 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix
index dc2bb4ba1e1..196cbb70b4e 100644
--- a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix
+++ b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix
@@ -1,16 +1,18 @@
-{ stdenv, fetchurl, system, makeWrapper, makeDesktopItem, autoPatchelfHook
+{ stdenv, fetchurl, system, makeWrapper, makeDesktopItem, autoPatchelfHook, env
 # Dynamic libraries
 , dbus, glib, libGL, libX11, libXfixes, libuuid, libxcb, qtbase, qtdeclarative
-, qtlocation, qtquickcontrols2, qtscript, qtwebchannel, qtwebengine
+, qtimageformats, qtlocation, qtquickcontrols, qtquickcontrols2, qtscript, qtsvg
+, qttools, qtwayland, qtwebchannel, qtwebengine
 # Runtime
-, libjpeg_turbo, pciutils, procps, qtimageformats
+, coreutils, libjpeg_turbo, pciutils, procps, utillinux
 , pulseaudioSupport ? true, libpulseaudio ? null
 }:
 
 assert pulseaudioSupport -> libpulseaudio != null;
 
 let
-  inherit (stdenv.lib) concatStringsSep makeBinPath optional optionalString;
+  inherit (stdenv.lib) concatStringsSep makeBinPath makeLibraryPath
+    makeSearchPath optional optionalString;
 
   version = "2.2.128200.0702";
   srcs = {
@@ -20,6 +22,13 @@ let
     };
   };
 
+  qtDeps = [
+    qtbase qtdeclarative qtlocation qtquickcontrols qtquickcontrols2 qtscript
+    qtwebchannel qtwebengine qtimageformats qtsvg qttools qtwayland
+  ];
+
+  qtEnv = env "zoom-us-qt-${qtbase.version}" qtDeps;
+
 in stdenv.mkDerivation {
   name = "zoom-us-${version}";
 
@@ -28,10 +37,8 @@ in stdenv.mkDerivation {
   nativeBuildInputs = [ autoPatchelfHook makeWrapper ];
 
   buildInputs = [
-    dbus glib libGL libX11 libXfixes libuuid libxcb qtbase qtdeclarative
-    qtlocation qtquickcontrols2 qtscript qtwebchannel qtwebengine
-    libjpeg_turbo
-  ];
+    dbus glib libGL libX11 libXfixes libuuid libxcb qtEnv libjpeg_turbo
+  ] ++ qtDeps;
 
   runtimeDependencies = optional pulseaudioSupport libpulseaudio;
 
@@ -46,7 +53,6 @@ in stdenv.mkDerivation {
         "ZXMPPROOT.cer"
         "ZoomLauncher"
         "config-dump.sh"
-        "qtdiag"
         "timezones"
         "translations"
         "version.txt"
@@ -67,11 +73,10 @@ in stdenv.mkDerivation {
       # TODO Patch this somehow; tries to dlopen './libturbojpeg.so' from cwd
       ln -s $(readlink -e "${libjpeg_turbo.out}/lib/libturbojpeg.so") $packagePath/libturbojpeg.so
 
+      ln -s ${qtEnv}/bin/qt.conf $packagePath
+
       makeWrapper $packagePath/zoom $out/bin/zoom-us \
-        --prefix PATH : "${makeBinPath [ pciutils procps ]}" \
-        --set QSG_INFO 1 \
-        --set QT_QPA_PLATFORM_PLUGIN_PATH ${qtbase.bin}/lib/qt-${qtbase.qtCompatVersion}/plugins/platforms \
-        --set QT_PLUGIN_PATH ${qtbase.bin}/${qtbase.qtPluginPrefix}:${qtimageformats}/${qtbase.qtPluginPrefix} \
+        --prefix PATH : "${makeBinPath [ coreutils glib.dev pciutils procps qttools.dev utillinux ]}" \
         --run "cd $packagePath"
 
       runHook postInstall

From 47dfba89d18db76ee2f95905ee23e3c7f9d3f8cd Mon Sep 17 00:00:00 2001
From: Benjamin Hipple <bhipple@protonmail.com>
Date: Thu, 12 Jul 2018 22:22:48 +0000
Subject: [PATCH 015/139] s4cmd: init at 2.0.1

Tool for interacting with S3 buckets, with some performance optimizations over s3cmd.

Skips installing the bash shell completion scripts in /etc, to work around:
https://github.com/NixOS/nixpkgs/issues/4968
https://github.com/pypa/setuptools/issues/130
---
 pkgs/tools/networking/s4cmd/default.nix | 35 +++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix         |  2 ++
 2 files changed, 37 insertions(+)
 create mode 100644 pkgs/tools/networking/s4cmd/default.nix

diff --git a/pkgs/tools/networking/s4cmd/default.nix b/pkgs/tools/networking/s4cmd/default.nix
new file mode 100644
index 00000000000..20f129357df
--- /dev/null
+++ b/pkgs/tools/networking/s4cmd/default.nix
@@ -0,0 +1,35 @@
+{ stdenv, python3Packages }:
+
+python3Packages.buildPythonApplication rec {
+  pname = "s4cmd";
+  version = "2.0.1";
+
+  src = python3Packages.fetchPypi {
+    inherit pname version;
+    sha256 = "14gfpnj4xa1sq3x3zd29drpzsygn998y32szwm069ma0w9jwjjz6";
+  };
+
+  propagatedBuildInputs = with python3Packages; [ boto3 pytz ];
+
+  # The upstream package tries to install some bash shell completion scripts in /etc.
+  # Setuptools is bugged and doesn't handle --prefix properly: https://github.com/pypa/setuptools/issues/130
+  patchPhase = ''
+    sed -i '/ data_files=/d' setup.py
+    sed -i 's|os.chmod("/etc.*|pass|' setup.py
+  '';
+
+  # Replace upstream's s4cmd wrapper script with the built-in Nix wrapper
+  postInstall = ''
+    ln -fs $out/bin/s4cmd.py $out/bin/s4cmd
+  '';
+
+  # Test suite requires an S3 bucket
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/bloomreach/s4cmd;
+    description = "Super S3 command line tool";
+    license = licenses.asl20;
+    maintainers = [ maintainers.bhipple ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9c3109df6d0..6d7f5ce0634 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4912,6 +4912,8 @@ with pkgs;
 
   s3cmd = callPackage ../tools/networking/s3cmd { };
 
+  s4cmd = callPackage ../tools/networking/s4cmd { };
+
   s3gof3r = callPackage ../tools/networking/s3gof3r { };
 
   s6Dns = callPackage ../tools/networking/s6-dns { };

From 0761bdbc291ca1f0c7f4795b7245607e8cf09426 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Thu, 12 Jul 2018 20:42:34 -0400
Subject: [PATCH 016/139] lollypop-portal: init at 0.9.7

---
 pkgs/misc/lollypop-portal/default.nix | 60 +++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix       |  3 ++
 2 files changed, 63 insertions(+)
 create mode 100644 pkgs/misc/lollypop-portal/default.nix

diff --git a/pkgs/misc/lollypop-portal/default.nix b/pkgs/misc/lollypop-portal/default.nix
new file mode 100644
index 00000000000..f9cd9ae7df5
--- /dev/null
+++ b/pkgs/misc/lollypop-portal/default.nix
@@ -0,0 +1,60 @@
+{ stdenv, fetchFromGitLab, meson, ninja, pkgconfig
+, python36Packages, gnome3, gst_all_1, gtk3, libnotify
+, kid3, easytag, gobjectIntrospection, wrapGAppsHook }:
+
+stdenv.mkDerivation rec {
+  name = "lollypop-portal";
+  version = "0.9.7";
+
+  src = fetchFromGitLab {
+     domain = "gitlab.gnome.org";
+     owner = "gnumdk";
+     repo = name;
+     rev = version;
+     sha256 = "0rn5xmh6391i9l69y613pjad3pzdilskr2xjfcir4vpk8wprvph3";
+  };
+
+  nativeBuildInputs = [
+    gobjectIntrospection
+    meson
+    ninja
+    pkgconfig
+    python36Packages.wrapPython
+    wrapGAppsHook
+  ];
+
+  buildInputs = [
+    gnome3.totem-pl-parser
+    gnome3.libsecret
+    gnome3.gnome-settings-daemon
+
+    gst_all_1.gstreamer
+    gst_all_1.gst-plugins-base
+
+    gtk3
+    libnotify
+  ];
+
+  pythonPath = with python36Packages; [
+    pygobject3
+    pydbus
+    pycairo
+  ];
+
+  preFixup = ''
+    buildPythonPath "$out/libexec/lollypop-portal $pythonPath"
+
+    gappsWrapperArgs+=(
+      --prefix PYTHONPATH : "$program_PYTHONPATH"
+      --prefix PATH : "${stdenv.lib.makeBinPath [ easytag kid3 ]}"
+    )
+  '';
+
+  meta = with stdenv.lib; {
+    description = "DBus Service for Lollypop";
+    homepage = https://gitlab.gnome.org/gnumdk/lollypop-portal;
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ worldofpeace ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d4399955ee6..3ffab85cb61 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21204,6 +21204,9 @@ with pkgs;
   lilypond-with-fonts = callPackage ../misc/lilypond/with-fonts.nix {
     lilypond = lilypond-unstable;
   };
+
+  lollypop-portal = callPackages ../misc/lollypop-portal { };
+
   openlilylib-fonts = callPackage ../misc/lilypond/fonts.nix { };
 
   mailcore2 = callPackage ../development/libraries/mailcore2 {

From d2c2f34c44889ad899568261d22b75a6456645a4 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Thu, 12 Jul 2018 20:44:50 -0400
Subject: [PATCH 017/139] lollypop: remove easytag

---
 pkgs/applications/audio/lollypop/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/applications/audio/lollypop/default.nix b/pkgs/applications/audio/lollypop/default.nix
index d961393f9ec..96e1c504373 100644
--- a/pkgs/applications/audio/lollypop/default.nix
+++ b/pkgs/applications/audio/lollypop/default.nix
@@ -25,7 +25,7 @@ stdenv.mkDerivation rec  {
   ];
 
   buildInputs = [ glib ] ++ (with gnome3; [
-    easytag gsettings_desktop_schemas gtk3 libsecret libsoup totem-pl-parser
+    gsettings_desktop_schemas gtk3 libsecret libsoup totem-pl-parser
   ]) ++ (with gst_all_1; [
     gst-libav gst-plugins-bad gst-plugins-base gst-plugins-good gst-plugins-ugly
     gstreamer

From c283323c1e0ee783a85d92ddd1bd72bba2f835f6 Mon Sep 17 00:00:00 2001
From: Yuriy Taraday <yorik.sar@gmail.com>
Date: Sat, 14 Jul 2018 01:38:41 +0400
Subject: [PATCH 018/139] chromium: 67.0.3396.87 -> 67.0.3396.99

---
 .../browsers/chromium/upstream-info.nix        | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.nix b/pkgs/applications/networking/browsers/chromium/upstream-info.nix
index a1aba0da2d6..16873ead34f 100644
--- a/pkgs/applications/networking/browsers/chromium/upstream-info.nix
+++ b/pkgs/applications/networking/browsers/chromium/upstream-info.nix
@@ -1,18 +1,18 @@
 # This file is autogenerated from update.sh in the same directory.
 {
   beta = {
-    sha256 = "1jfhdisp4j6rrb8zxj2am7vlkjfbwvq1si7cacjwfy624hlhxpxz";
-    sha256bin64 = "0j3aw4zyg0alizgh73dp3fz8f6y71srdkycnzjm037p3p8m364j1";
-    version = "68.0.3440.17";
+    sha256 = "0m82ag02mydq5xkd0pamk2nq035j7yzhl47hnwl1irm632rpnfb4";
+    sha256bin64 = "0xx6kjaa13al1ka0rfcrz1aj0nwhdwzqakz533ghk8qyvhanypkp";
+    version = "68.0.3440.59";
   };
   dev = {
-    sha256 = "0acgpi7slwvq5lxaagmn57a6jpz508hwa690ypny8zlhsiaqlxaz";
-    sha256bin64 = "1vjmi9lm8xrkhmzv9sqnln867sm4b80y2z3djz7mj05hkzsb0zr9";
-    version = "69.0.3452.0";
+    sha256 = "1gpjf213ai3sjh894jsl5ziild15049p6bnh36z0r1f5w68pzakg";
+    sha256bin64 = "1slj3gj4786lqrypng48zy5030snar8pirqwm92b5pq25xd595j8";
+    version = "69.0.3486.0";
   };
   stable = {
-    sha256 = "07fvfarlzl4dcr0vbklzbg08iwvzfkczsqsg0d1p695q1hpsf9sx";
-    sha256bin64 = "1c2xn84vs1v7gph7l4s408ml6l6c7lnlg4z2vcx20phxmlsgs1xg";
-    version = "67.0.3396.87";
+    sha256 = "0am0q0wkmrvhidi4x07fvgb4ymv5q3agmwzgm808dj7ninfnnba5";
+    sha256bin64 = "06baih4wf88rpmw73vfhap4dxd61vjgmr256ix8qd937x2hv7qd3";
+    version = "67.0.3396.99";
   };
 }

From 2a7aa43c164cfe53d04a448b37447d3a4bbe9cc0 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Fri, 13 Jul 2018 23:10:37 +0000
Subject: [PATCH 019/139] bazel: use per-user tmp directory to avoid conflict
 with other builders

---
 pkgs/development/tools/build-managers/bazel/0.4.nix     | 3 ++-
 pkgs/development/tools/build-managers/bazel/default.nix | 4 ++--
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/tools/build-managers/bazel/0.4.nix b/pkgs/development/tools/build-managers/bazel/0.4.nix
index 7fa39ef2162..69f467f577c 100644
--- a/pkgs/development/tools/build-managers/bazel/0.4.nix
+++ b/pkgs/development/tools/build-managers/bazel/0.4.nix
@@ -65,8 +65,9 @@ stdenv.mkDerivation rec {
   ];
 
   buildPhase = ''
+    export TMPDIR=/tmp/.bazel-$UID
     ./compile.sh
-    ./output/bazel --output_user_root=/tmp/.bazel build //scripts:bash_completion \
+    ./output/bazel --output_user_root=$TMPDIR/.bazel build //scripts:bash_completion \
       --spawn_strategy=standalone \
       --genrule_strategy=standalone
     cp bazel-bin/scripts/bazel-complete.bash output/
diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix
index 112cd840a9f..48b68e9cb00 100644
--- a/pkgs/development/tools/build-managers/bazel/default.nix
+++ b/pkgs/development/tools/build-managers/bazel/default.nix
@@ -483,9 +483,9 @@ stdenv.mkDerivation rec {
   # Change this to $(mktemp -d) as soon as we figure out why.
 
   buildPhase = ''
-    export TMPDIR=/tmp
+    export TMPDIR=/tmp/.bazel-$UID
     ./compile.sh
-    ./output/bazel --output_user_root=/tmp/.bazel build //scripts:bash_completion \
+    ./output/bazel --output_user_root=$TMPDIR/.bazel build //scripts:bash_completion \
       --spawn_strategy=standalone \
       --genrule_strategy=standalone \
       --crosstool_top=//nix:nix --host_crosstool_top=//nix:nix

From 88b8186b13ed77b08095bb7c7a43ea9c904348c2 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Sat, 14 Jul 2018 17:44:18 +0800
Subject: [PATCH 020/139] libebml: 1.3.5 -> 1.3.6

---
 .../development/libraries/libebml/default.nix | 24 ++++++++++++-------
 1 file changed, 16 insertions(+), 8 deletions(-)

diff --git a/pkgs/development/libraries/libebml/default.nix b/pkgs/development/libraries/libebml/default.nix
index b5b2b8e3734..59651af2b8c 100644
--- a/pkgs/development/libraries/libebml/default.nix
+++ b/pkgs/development/libraries/libebml/default.nix
@@ -1,19 +1,27 @@
-{ stdenv, fetchurl }:
+{ stdenv, fetchFromGitHub, cmake, pkgconfig }:
 
 stdenv.mkDerivation rec {
-  name = "libebml-1.3.5";
+  name = "libebml-${version}";
+  version = "1.3.6";
 
-  src = fetchurl {
-    url = "https://dl.matroska.org/downloads/libebml/${name}.tar.xz";
-    sha256 = "005a0ipqnfbsq47zrc61zszi439jw32q5xd6dc1jyb3lc0zl266q";
+  src = fetchFromGitHub {
+    owner  = "Matroska-Org";
+    repo   = "libebml";
+    rev    = "release-${version}";
+    sha256 = "0fl8d35ywj9id93yp78qlxy7j81kjri957agq40r420kmwac3dzs";
   };
 
+  nativeBuildInputs = [ cmake pkgconfig ];
+
+  cmakeFlags = [
+    "-DBUILD_SHARED_LIBS=YES"
+  ];
+
   meta = with stdenv.lib; {
     description = "Extensible Binary Meta Language library";
-    license = licenses.lgpl21;
     homepage = https://dl.matroska.org/downloads/libebml/;
-    maintainers = [ maintainers.spwhitt ];
+    license = licenses.lgpl21;
+    maintainers = with maintainers; [ spwhitt ];
     platforms = platforms.unix;
   };
 }
-

From 85f44394a1d83ab53dcfb080dd767d97aeaf4d16 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Sat, 14 Jul 2018 17:44:44 +0800
Subject: [PATCH 021/139] libmatroska: 1.4.8 -> 1.4.9

---
 .../libraries/libmatroska/default.nix         | 23 ++++++++++++-------
 1 file changed, 15 insertions(+), 8 deletions(-)

diff --git a/pkgs/development/libraries/libmatroska/default.nix b/pkgs/development/libraries/libmatroska/default.nix
index e7bce0e8018..bbc694619d4 100644
--- a/pkgs/development/libraries/libmatroska/default.nix
+++ b/pkgs/development/libraries/libmatroska/default.nix
@@ -1,23 +1,30 @@
-{ stdenv, fetchurl, pkgconfig, libebml }:
+{ stdenv, fetchFromGitHub, cmake, pkgconfig
+, libebml }:
 
 stdenv.mkDerivation rec {
-  name = "libmatroska-1.4.8";
+  name = "libmatroska-${version}";
+  version = "1.4.9";
 
-  src = fetchurl {
-    url = "https://dl.matroska.org/downloads/libmatroska/${name}.tar.xz";
-    sha256 = "14n9sw974prr3yp4yjb7aadi6x2yz5a0hjw8fs3qigy5shh2piyq";
+  src = fetchFromGitHub {
+    owner  = "Matroska-Org";
+    repo   = "libmatroska";
+    rev    = "release-${version}";
+    sha256 = "1hfrcpvmyqnvdkw8rz1z20zw7fpnjyl5h0g9ky7k6y1a44b1fz86";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ cmake pkgconfig ];
 
   buildInputs = [ libebml ];
 
+  cmakeFlags = [
+    "-DBUILD_SHARED_LIBS=YES"
+  ];
+
   meta = with stdenv.lib; {
     description = "A library to parse Matroska files";
     homepage = https://matroska.org/;
     license = licenses.lgpl21;
-    maintainers = [ maintainers.spwhitt ];
+    maintainers = with maintainers; [ spwhitt ];
     platforms = platforms.unix;
   };
 }
-

From 65eb3a590d8d5657e3bf8534ddccc827aefc1862 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Sat, 14 Jul 2018 13:25:28 +0800
Subject: [PATCH 022/139] firejail: add nixos module

Also add support for wrapping binaries with firejail.
---
 nixos/doc/manual/release-notes/rl-1809.xml | 21 ++++++++++
 nixos/modules/module-list.nix              |  1 +
 nixos/modules/programs/firejail.nix        | 48 ++++++++++++++++++++++
 3 files changed, 70 insertions(+)
 create mode 100644 nixos/modules/programs/firejail.nix

diff --git a/nixos/doc/manual/release-notes/rl-1809.xml b/nixos/doc/manual/release-notes/rl-1809.xml
index 13b244e12f8..7fd6483bca1 100644
--- a/nixos/doc/manual/release-notes/rl-1809.xml
+++ b/nixos/doc/manual/release-notes/rl-1809.xml
@@ -18,6 +18,27 @@
   </para>
 
   <itemizedlist>
+   <listitem>
+     <para>
+       Support for wrapping binaries using <literal>firejail</literal> has been
+       added through <varname>programs.firejail.wrappedBinaries</varname>.
+     </para>
+     <para>
+       For example
+     </para>
+<programlisting>
+programs.firejail = {
+  enable = true;
+  wrappedBinaries = {
+    firefox = "${lib.getBin pkgs.firefox}/bin/firefox";
+    mpv = "${lib.getBin pkgs.mpv}/bin/mpv";
+  };
+};
+</programlisting>
+      <para>
+        This will place <literal>firefox</literal> and <literal>mpv</literal> binaries in the global path wrapped by firejail.
+      </para>
+   </listitem>
    <listitem>
     <para>
      User channels are now in the default <literal>NIX_PATH</literal>, allowing
diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index f6628b8e9c5..23103581cf0 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -86,6 +86,7 @@
   ./programs/dconf.nix
   ./programs/digitalbitbox/default.nix
   ./programs/environment.nix
+  ./programs/firejail.nix
   ./programs/fish.nix
   ./programs/freetds.nix
   ./programs/gnupg.nix
diff --git a/nixos/modules/programs/firejail.nix b/nixos/modules/programs/firejail.nix
new file mode 100644
index 00000000000..46ee4bc0f7a
--- /dev/null
+++ b/nixos/modules/programs/firejail.nix
@@ -0,0 +1,48 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.programs.firejail;
+
+  wrappedBins = pkgs.stdenv.mkDerivation rec {
+    name = "firejail-wrapped-binaries";
+    nativeBuildInputs = with pkgs; [ makeWrapper ];
+    buildCommand = ''
+      mkdir -p $out/bin
+      ${lib.concatStringsSep "\n" (lib.mapAttrsToList (command: binary: ''
+      cat <<_EOF >$out/bin/${command}
+      #!${pkgs.stdenv.shell} -e
+      /run/wrappers/bin/firejail ${binary} "\$@"
+      _EOF
+      chmod 0755 $out/bin/${command}
+      '') cfg.wrappedBinaries)}
+    '';
+  };
+
+in {
+  options.programs.firejail = {
+    enable = mkEnableOption "firejail";
+
+    wrappedBinaries = mkOption {
+      type = types.attrs;
+      default = {};
+      description = ''
+        Wrap the binaries in firejail and place them in the global path.
+        </para>
+        <para>
+        You will get file collisions if you put the actual application binary in
+        the global environment and applications started via .desktop files are
+        not wrapped if they specify the absolute path to the binary.
+      '';
+    };
+  };
+
+  config = mkIf cfg.enable {
+    security.wrappers.firejail.source = "${lib.getBin pkgs.firejail}/bin/firejail";
+
+    environment.systemPackages = [ wrappedBins ];
+  };
+
+  meta.maintainers = with maintainers; [ peterhoeg ];
+}

From 1997deab8db26feaa8381fe7b2982fe4fbba4ac0 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 14 Jul 2018 11:01:45 +0200
Subject: [PATCH 023/139] =?UTF-8?q?gnome3.geary:=203.28.2=20=E2=86=92=203.?=
 =?UTF-8?q?28.3?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/desktops/gnome-3/misc/geary/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/gnome-3/misc/geary/default.nix b/pkgs/desktops/gnome-3/misc/geary/default.nix
index 548936dc5e5..37f149c7ad9 100644
--- a/pkgs/desktops/gnome-3/misc/geary/default.nix
+++ b/pkgs/desktops/gnome-3/misc/geary/default.nix
@@ -6,14 +6,14 @@
 
 let
   pname = "geary";
-  version = "0.12.2";
+  version = "0.12.3";
 in
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${name}.tar.xz";
-    sha256 = "09j5gh4zm49fcg2ycvy00dkkw69rfppqwc3lqdi4994hry4jivx9";
+    sha256 = "18zzjzs075zja00xpnyvjrrdzm54icdhfw4ywhpr6rqfcpnzifw7";
   };
 
   nativeBuildInputs = [ vala_0_40 intltool pkgconfig wrapGAppsHook cmake ninja desktop-file-utils gnome-doc-utils gobjectIntrospection ];

From a4ae6da0603f8bf33e7780bef4096c9e2354a3b7 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 14 Jul 2018 11:02:15 +0200
Subject: [PATCH 024/139] calf: fix memory leak

---
 pkgs/applications/audio/calf/default.nix | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/pkgs/applications/audio/calf/default.nix b/pkgs/applications/audio/calf/default.nix
index 7ff762aa8a0..94b43fc544a 100644
--- a/pkgs/applications/audio/calf/default.nix
+++ b/pkgs/applications/audio/calf/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, cairo, expat, fftwSinglePrec, fluidsynth, glib
+{ stdenv, fetchurl, fetchpatch, cairo, expat, fftwSinglePrec, fluidsynth, glib
 , gtk2, libjack2, ladspaH , libglade, lv2, pkgconfig }:
 
 stdenv.mkDerivation rec {
@@ -10,6 +10,15 @@ stdenv.mkDerivation rec {
     sha256 = "0dijv2j7vlp76l10s4v8gbav26ibaqk8s24ci74vrc398xy00cib";
   };
 
+  patches = [
+    # Fix memory leak in limiter
+    # https://github.com/flathub/com.github.wwmm.pulseeffects/issues/12
+    (fetchpatch {
+      url = https://github.com/calf-studio-gear/calf/commit/7afdefc0d0489a6227fd10f15843d81dc82afd62.patch;
+      sha256 = "056662iw6hp4ykwk4jyrzg5yarcn17ni97yc060y5kcnzy29ddg6";
+    })
+  ];
+
   buildInputs = [
     cairo expat fftwSinglePrec fluidsynth glib gtk2 libjack2 ladspaH
     libglade lv2 pkgconfig

From 5011ef2b7af892d33c879f15225a8d65f0d80a94 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 14 Jul 2018 12:57:31 +0200
Subject: [PATCH 025/139] =?UTF-8?q?pulseeffects:=204.1.3=20=E2=86=92=204.1?=
 =?UTF-8?q?.5?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/applications/audio/pulseeffects/default.nix | 13 +++++++++++--
 1 file changed, 11 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/pulseeffects/default.nix b/pkgs/applications/audio/pulseeffects/default.nix
index a62612a6e0f..9e8b924d43d 100644
--- a/pkgs/applications/audio/pulseeffects/default.nix
+++ b/pkgs/applications/audio/pulseeffects/default.nix
@@ -18,7 +18,10 @@
 , sord
 , sratom
 , libbs2b
+, libsamplerate
+, libsndfile
 , boost
+, fftwFloat
 , calf
 , zam-plugins
 , rubberband
@@ -36,13 +39,13 @@ let
   ];
 in stdenv.mkDerivation rec {
   name = "pulseeffects-${version}";
-  version = "4.1.3";
+  version = "4.1.5";
 
   src = fetchFromGitHub {
     owner = "wwmm";
     repo = "pulseeffects";
     rev = "v${version}";
-    sha256 = "1f89msg8hzaf1pa9w3gaifb88dm0ca2wd81jlz3vr98hm7kxd85k";
+    sha256 = "1k5ibn4ilzhps91insvw07jd9x9yxhxl8pvfzgcm9ndvb8anifv4";
   };
 
   nativeBuildInputs = [
@@ -61,11 +64,15 @@ in stdenv.mkDerivation rec {
     gtk3
     gtkmm3
     gst_all_1.gstreamer
+    gst_all_1.gst-plugins-base
     gst_all_1.gst-plugins-good
     gst_all_1.gst-plugins-bad
     lilv lv2 serd sord sratom
     libbs2b
+    libsamplerate
+    libsndfile
     boost
+    fftwFloat
   ];
 
   postPatch = ''
@@ -74,6 +81,8 @@ in stdenv.mkDerivation rec {
   '';
 
   preFixup = ''
+    addToSearchPath GST_PLUGIN_SYSTEM_PATH_1_0 $out/lib/gstreamer-1.0
+
     gappsWrapperArgs+=(
       --set LV2_PATH "${stdenv.lib.makeSearchPath "lib/lv2" lv2Plugins}"
       --set LADSPA_PATH "${stdenv.lib.makeSearchPath "lib/ladspa" ladspaPlugins}"

From fccbb2a9e6bf059f67953f557d7a777b2e510511 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 14 Jul 2018 15:51:42 +0200
Subject: [PATCH 026/139] =?UTF-8?q?gucharmap:=2010.0.0=20=E2=86=92=2011.0.?=
 =?UTF-8?q?1?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .../gnome-3/core/gucharmap/default.nix        | 52 ++++++++++++-------
 .../gnome-3/core/gucharmap/unicode-data.nix   | 29 ++++++-----
 2 files changed, 48 insertions(+), 33 deletions(-)

diff --git a/pkgs/desktops/gnome-3/core/gucharmap/default.nix b/pkgs/desktops/gnome-3/core/gucharmap/default.nix
index 45a4a97205b..1562c42b374 100644
--- a/pkgs/desktops/gnome-3/core/gucharmap/default.nix
+++ b/pkgs/desktops/gnome-3/core/gucharmap/default.nix
@@ -1,41 +1,55 @@
-{ stdenv, intltool, fetchurl, pkgconfig, gtk3, defaultIconTheme
-, glib, desktop-file-utils, bash, appdata-tools
+{ stdenv, intltool, fetchFromGitLab, pkgconfig, gtk3, defaultIconTheme
+, glib, desktop-file-utils, bash, appdata-tools, gtk-doc, autoconf, automake, libtool
 , wrapGAppsHook, gnome3, itstool, libxml2
 , callPackage, unzip, gobjectIntrospection }:
 
-stdenv.mkDerivation rec {
+let
+  unicode-data = callPackage ./unicode-data.nix {};
+in stdenv.mkDerivation rec {
   name = "gucharmap-${version}";
-  version = "10.0.4";
+  version = "11.0.1";
 
-  src = fetchurl {
-    url = "mirror://gnome/sources/gucharmap/${gnome3.versionBranch version}/${name}.tar.xz";
-    sha256 = "00gh3lll6wykd2qg1lrj05a4wvscsypmrx7rpb6jsbvb4scnh9mv";
+  src = fetchFromGitLab {
+    domain = "gitlab.gnome.org";
+    owner = "GNOME";
+    repo = "gucharmap";
+    rev = version;
+    sha256 = "13iw4fa6mv8vi8bkwk0bbhamnzbaih0c93p4rh07khq6mxa6hnpi";
   };
 
-  passthru = {
-    updateScript = gnome3.updateScript { packageName = "gucharmap"; };
-  };
-
-  doCheck = true;
-
-  preConfigure = "patchShebangs gucharmap/gen-guch-unicode-tables.pl";
-
   nativeBuildInputs = [
     pkgconfig wrapGAppsHook unzip intltool itstool appdata-tools
+    autoconf automake libtool gtk-doc
     gnome3.yelp-tools libxml2 desktop-file-utils gobjectIntrospection
   ];
 
   buildInputs = [ gtk3 glib gnome3.gsettings-desktop-schemas defaultIconTheme ];
 
-  unicode-data = callPackage ./unicode-data.nix {};
+  configureFlags = [
+    "--with-unicode-data=${unicode-data}"
+  ];
 
-  configureFlags = "--with-unicode-data=${unicode-data}";
+  doCheck = true;
+
+  postPatch = ''
+    patchShebangs gucharmap/gen-guch-unicode-tables.pl
+  '';
+
+  preConfigure = ''
+    NOCONFIGURE=1 ./autogen.sh
+  '';
+
+  passthru = {
+    updateScript = gnome3.updateScript {
+      packageName = "gucharmap";
+    };
+  };
 
   meta = with stdenv.lib; {
-    homepage = https://wiki.gnome.org/Apps/Gucharmap;
     description = "GNOME Character Map, based on the Unicode Character Database";
-    maintainers = gnome3.maintainers;
+    homepage = https://wiki.gnome.org/Apps/Gucharmap;
     license = licenses.gpl3;
+    maintainers = gnome3.maintainers;
     platforms = platforms.linux;
   };
 }
diff --git a/pkgs/desktops/gnome-3/core/gucharmap/unicode-data.nix b/pkgs/desktops/gnome-3/core/gucharmap/unicode-data.nix
index 72299b8a369..6bf2fd39a2d 100644
--- a/pkgs/desktops/gnome-3/core/gucharmap/unicode-data.nix
+++ b/pkgs/desktops/gnome-3/core/gucharmap/unicode-data.nix
@@ -1,30 +1,31 @@
 { fetchurl, stdenv, gnome3 }:
-stdenv.mkDerivation {
-  name = "unicode-data-10.0.0";
+stdenv.mkDerivation rec {
+  name = "unicode-data-${version}";
+  version = "11.0.0";
   srcs = [
     (fetchurl {
-      url = "http://www.unicode.org/Public/10.0.0/ucd/Blocks.txt";
-      sha256 = "19zf2kd198mcv1paa194c1zf36hay1irbxssi35yi2pd8ad69qas";
+      url = "http://www.unicode.org/Public/${version}/ucd/Blocks.txt";
+      sha256 = "0lnh9iazikpr548bd7nkaq9r3vfljfvz0rg2462prac8qxk7ni8b";
     })
     (fetchurl {
-      url = "http://www.unicode.org/Public/10.0.0/ucd/DerivedAge.txt";
-      sha256 = "1h9p1g0wnh686l6cqar7cmky465vwc6vjzzn1s7v0i9zcjaqkr4h";
+      url = "http://www.unicode.org/Public/${version}/ucd/DerivedAge.txt";
+      sha256 = "0rlqqd0b1sqbzvrj29dwdizx8lyvrbfirsnn8za9lb53x5fml4gb";
     })
     (fetchurl {
-      url = "http://www.unicode.org/Public/10.0.0/ucd/NamesList.txt";
-      sha256 = "0gvpcyq852rnlqmx4y5i1by7bavvcw6rj40i54w48yc7xr3zmgd1";
+      url = "http://www.unicode.org/Public/${version}/ucd/NamesList.txt";
+      sha256 = "0yr2h0nfqhirfi3bxl33z6cc94qqshlpgi06c25xh9754irqsgv8";
     })
     (fetchurl {
-      url = "http://www.unicode.org/Public/10.0.0/ucd/Scripts.txt";
-      sha256 = "0b9prz2hs6w61afqaplcxnv115f8yk4d5hn9dc5hks8nqpj28bnh";
+      url = "http://www.unicode.org/Public/${version}/ucd/Scripts.txt";
+      sha256 = "1mbnvf97nwa3pvyzx9nd2wa94f8s0npg9740kic2p2ag7jmc1wz9";
     })
     (fetchurl {
-      url = "http://www.unicode.org/Public/10.0.0/ucd/UnicodeData.txt";
-      sha256 = "1cfak1j753zcrbgixwgppyxhm4w8vda8vxhqymi7n5ljfi6kwhjj";
+      url = "http://www.unicode.org/Public/${version}/ucd/UnicodeData.txt";
+      sha256 = "16b0jzvvzarnlxdvs2izd5ia0ipbd87md143dc6lv6xpdqcs75s9";
     })
     (fetchurl {
-      url = "http://www.unicode.org/Public/10.0.0/ucd/Unihan.zip";
-      sha256 = "199kz6laypkvc0ykms6d7bkb571jmpds39sv2p7kd5jjm1ij08q1";
+      url = "http://www.unicode.org/Public/${version}/ucd/Unihan.zip";
+      sha256 = "0cy8gxb17ksi5h4ysypk4c09z61am1svjrvg97hm5m5ccjfrs1vj";
     })
   ];
   phases = "installPhase";

From 7d7d27aca6f6e21e9f3efd494eb0d666f81e6955 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sat, 14 Jul 2018 12:44:19 -0500
Subject: [PATCH 027/139] linuxPackages.bcc: 0.5.0 -> 0.6.0

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/os-specific/linux/bcc/default.nix | 16 +++++-----------
 1 file changed, 5 insertions(+), 11 deletions(-)

diff --git a/pkgs/os-specific/linux/bcc/default.nix b/pkgs/os-specific/linux/bcc/default.nix
index 4f0a423600f..3104004b3d6 100644
--- a/pkgs/os-specific/linux/bcc/default.nix
+++ b/pkgs/os-specific/linux/bcc/default.nix
@@ -4,14 +4,14 @@
 }:
 
 python.pkgs.buildPythonApplication rec {
-  version = "0.5.0";
+  version = "0.6.0";
   name = "bcc-${version}";
 
   src = fetchFromGitHub {
-    owner = "iovisor";
-    repo = "bcc";
-    rev = "v${version}";
-    sha256 = "0bb3244xll5sqx0lvrchg71qy2zg0yj6r5h4v5fvrg1fjhaldys9";
+    owner  = "iovisor";
+    repo   = "bcc";
+    rev    = "v${version}";
+    sha256 = "1fk2kvbdvm87rkha2cigz2qhhlrni4g0dcnmiiyya79y85ahfvga";
   };
 
   format = "other";
@@ -23,12 +23,6 @@ python.pkgs.buildPythonApplication rec {
   ];
 
   patches = [
-    # fix build with llvm > 5.0.0 && < 6.0.0
-    (fetchpatch {
-      url = "https://github.com/iovisor/bcc/commit/bd7fa55bb39b8978dafd0b299e35616061e0a368.patch";
-      sha256 = "1sgxhsq174iihyk1x08py73q8fh78d7y3c90k5nh8vcw2pf1xbnf";
-    })
-
     # This is needed until we fix
     # https://github.com/NixOS/nixpkgs/issues/40427
     ./fix-deadlock-detector-import.patch

From 8f21a16861fdd1593f16269b88362eefa3d86592 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sat, 14 Jul 2018 12:48:15 -0500
Subject: [PATCH 028/139] timescaledb: create $out/bin in order to work around
 a stupid bug

See #22653 or #38469. 'manveru' reported this on IRC again, but unfortunately a
real fix requires a bit more work. In the mean time, this plugs the leak with a
bit of duct tape.

'timescale' is an often desired extension and, in the mean time, this
workaround means you also do not have to install something like postgis (with a
large dependency set) into your closure to get things to work.

Ideally in the mean time, *all* postgresql extensions should have $out/bin
created for them... Doing this will require more ongoing work, or a proper
fix to the buildEnv nonsense going on.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/servers/sql/postgresql/timescaledb/default.nix | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/pkgs/servers/sql/postgresql/timescaledb/default.nix b/pkgs/servers/sql/postgresql/timescaledb/default.nix
index ce298cb2745..7ba8d311ad4 100644
--- a/pkgs/servers/sql/postgresql/timescaledb/default.nix
+++ b/pkgs/servers/sql/postgresql/timescaledb/default.nix
@@ -34,6 +34,13 @@ stdenv.mkDerivation rec {
     done
   '';
 
+  postInstall = ''
+    # work around an annoying bug, by creating $out/bin, so buildEnv doesn't freak out later
+    # see https://github.com/NixOS/nixpkgs/issues/22653
+
+    mkdir -p $out/bin
+  '';
+
   meta = with stdenv.lib; {
     description = "Scales PostgreSQL for time-series data via automatic partitioning across time and space";
     homepage    = https://www.timescale.com/;

From 6a1b65b60691ea025acab758f06891fbbe4cc148 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sat, 14 Jul 2018 12:53:36 -0500
Subject: [PATCH 029/139] timescaledb: 0.9.2 -> 0.10.1

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/servers/sql/postgresql/timescaledb/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/sql/postgresql/timescaledb/default.nix b/pkgs/servers/sql/postgresql/timescaledb/default.nix
index 7ba8d311ad4..1eaa7775793 100644
--- a/pkgs/servers/sql/postgresql/timescaledb/default.nix
+++ b/pkgs/servers/sql/postgresql/timescaledb/default.nix
@@ -8,7 +8,7 @@
 
 stdenv.mkDerivation rec {
   name = "timescaledb-${version}";
-  version = "0.9.2";
+  version = "0.10.1";
 
   nativeBuildInputs = [ cmake ];
   buildInputs = [ postgresql ];
@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
     owner  = "timescale";
     repo   = "timescaledb";
     rev    = "refs/tags/${version}";
-    sha256 = "1zgyd407skqbsw2zj3l9hixwlisnj82yb6hbq5khjg9k0ifvvgyp";
+    sha256 = "07qkkf7lbwaig26iia54vdakwmv33f71p8saqifz9lf0zy6xn0w0";
   };
 
   # Fix the install phase which tries to install into the pgsql extension dir,

From 0cf4c904697bed80c8f311d8bad6abd0dc390477 Mon Sep 17 00:00:00 2001
From: Vincent Ambo <mail@tazj.in>
Date: Thu, 12 Jul 2018 21:48:43 +0200
Subject: [PATCH 030/139] rebar3: 3.4.3 -> 3.6.1

Updates rebar3 to version 3.6.1, which amongst other things introduces
support for rebar3 on Erlang/OTP 21.

Changes made:

* rebar3 and dependencies updated to new versions
* rebar3 hermeticity patch updated to apply against new version
* hex package registry snapshot updated
---
 .../beam-modules/hex-registry-snapshot.nix    | 11 +++---
 .../tools/build-managers/rebar3/default.nix   | 38 +++++++++----------
 .../rebar3/hermetic-rebar3.patch              | 37 +++++++++---------
 3 files changed, 42 insertions(+), 44 deletions(-)

diff --git a/pkgs/development/beam-modules/hex-registry-snapshot.nix b/pkgs/development/beam-modules/hex-registry-snapshot.nix
index 6f127d86285..991e9717b80 100644
--- a/pkgs/development/beam-modules/hex-registry-snapshot.nix
+++ b/pkgs/development/beam-modules/hex-registry-snapshot.nix
@@ -2,15 +2,14 @@
 
 stdenv.mkDerivation rec {
     name = "hex-registry";
-    rev = "9f736e7";
-    version = "0.0.0+build.${rev}";
+    rev = "11d7a24e9f53f52490ce255a6248e71128e73aa1";
+    version = "20180712.${rev}";
 
-    # src = /home/gleber/code/erl/hex-pm-registry-snapshots;
     src = fetchFromGitHub {
-        owner = "erlang-nix";
-        repo = "hex-pm-registry-snapshots";
         inherit rev;
-        sha256 = "1xiw5yifyk3bbmr0cr82y1nc4c6zk11f6azdv07glb7yrgccrv79";
+        owner  = "erlang-nix";
+        repo   = "hex-pm-registry-snapshots";
+        sha256 = "0dbpcrdh6jqmvnm1ysmy7ixyc95vnbqmikyx5kk77qwgyd43fqgi";
     };
 
     installPhase = ''
diff --git a/pkgs/development/tools/build-managers/rebar3/default.nix b/pkgs/development/tools/build-managers/rebar3/default.nix
index 04555f58884..ff6dc07ea9e 100644
--- a/pkgs/development/tools/build-managers/rebar3/default.nix
+++ b/pkgs/development/tools/build-managers/rebar3/default.nix
@@ -3,19 +3,19 @@
   tree, fetchFromGitHub, hexRegistrySnapshot }:
 
 let
-  version = "3.4.3";
+  version = "3.6.1";
 
   bootstrapper = ./rebar3-nix-bootstrap;
 
   erlware_commons = fetchHex {
     pkg = "erlware_commons";
-    version = "1.0.0";
-    sha256 = "0wkphbrjk19lxdwndy92v058qwcaz13bcgdzp33h21aa7vminzx7";
+    version = "1.2.0";
+    sha256 = "149kkn9gc9cjgvlmakygq475r63q2rry31s29ax0s425dh37sfl7";
   };
   ssl_verify_fun = fetchHex {
     pkg = "ssl_verify_fun";
-    version = "1.1.2";
-    sha256 = "0qdyx70v09fydv4wzz1djnkixqj62ny40yjjhv2q6mh47lns2arj";
+    version = "1.1.3";
+    sha256 = "1zljxashfhqmiscmf298vhr880ppwbgi2rl3nbnyvsfn0mjhw4if";
   };
   certifi = fetchHex {
     pkg = "certifi";
@@ -24,23 +24,23 @@ let
   };
   providers = fetchHex {
     pkg = "providers";
-    version = "1.6.0";
-    sha256 = "0byfa1h57n46jilz4q132j0vk3iqc0v1vip89li38gb1k997cs0g";
+    version = "1.7.0";
+    sha256 = "19p4rbsdx9lm2ihgvlhxyld1q76kxpd7qwyqxxsgmhl5r8ln3rlb";
   };
   getopt = fetchHex {
     pkg = "getopt";
-    version = "0.8.2";
-    sha256 = "1xw30h59zbw957cyjd8n50hf9y09jnv9dyry6x3avfwzcyrnsvkk";
+    version = "1.0.1";
+    sha256 = "174mb46c2qd1f4a7507fng4vvscjh1ds7rykfab5rdnfp61spqak";
   };
   bbmustache = fetchHex {
     pkg = "bbmustache";
-    version = "1.3.0";
-    sha256 = "042pfgss8kscq6ssg8gix8ccmdsrx0anjczsbrn2a6c36ljrx2p6";
+    version = "1.5.0";
+    sha256 = "0xg3r4lxhqifrv32nm55b4zmkflacc1s964g15p6y6jfx6v4y1zd";
   };
   relx = fetchHex {
     pkg = "relx";
-    version = "3.23.1";
-    sha256 = "13j7wds2d7b8v3r9pwy3zhwhzywgwhn6l9gm3slqzyrs1jld0a9d";
+    version = "3.26.0";
+    sha256 = "1f810rb01kdidpa985s321ycg3y4hvqpzbk263n6i1bfnqykkvv9";
   };
   cf = fetchHex {
     pkg = "cf";
@@ -49,13 +49,13 @@ let
   };
   cth_readable = fetchHex {
     pkg = "cth_readable";
-    version = "1.3.0";
-    sha256 = "1s7bqj6f2zpbyjmbfq2mm6vcz1jrxjr2nd0531wshsx6fnshqhvs";
+    version = "1.4.2";
+    sha256 = "1pjid4f60pp81ds01rqa6ybksrnzqriw3aibilld1asn9iabxkav";
   };
   eunit_formatters = fetchHex {
     pkg = "eunit_formatters";
-    version = "0.3.1";
-    sha256 = "0cg9dasv60v09q3q4wja76pld0546mhmlpb0khagyylv890hg934";
+    version = "0.5.0";
+    sha256 = "1jb3hzb216r29x2h4pcjwfmx1k81431rgh5v0mp4x5146hhvmj6n";
   };
   rebar3_hex = fetchHex {
     pkg = "rebar3_hex";
@@ -70,7 +70,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "https://github.com/rebar/rebar3/archive/${version}.tar.gz";
-    sha256 = "1a05gpxxc3mx5v33kzpb5xnq5vglmjl0q8hrcvpinjlazcwbg531";
+    sha256 = "0cqhqymzh10pfyxqiy4hcg3d2myz3chx0y4m2ixmq8zk81acics0";
   };
 
   inherit bootstrapper;
@@ -121,6 +121,6 @@ stdenv.mkDerivation {
       '';
 
     platforms = stdenv.lib.platforms.unix;
-    maintainers = [ stdenv.lib.maintainers.gleber ];
+    maintainers = with stdenv.lib.maintainers; [ gleber tazjin ];
   };
 }
diff --git a/pkgs/development/tools/build-managers/rebar3/hermetic-rebar3.patch b/pkgs/development/tools/build-managers/rebar3/hermetic-rebar3.patch
index db45827f583..59004561126 100644
--- a/pkgs/development/tools/build-managers/rebar3/hermetic-rebar3.patch
+++ b/pkgs/development/tools/build-managers/rebar3/hermetic-rebar3.patch
@@ -1,5 +1,5 @@
 diff --git a/bootstrap b/bootstrap
-index 7c56bab..16c1be5 100755
+index 5dedd713..864056c4 100755
 --- a/bootstrap
 +++ b/bootstrap
 @@ -101,7 +101,7 @@ extract(Binary) ->
@@ -12,9 +12,8 @@ index 7c56bab..16c1be5 100755
                         [{body_format, binary}],
                         rebar) of
 diff --git a/src/rebar_hermeticity.erl b/src/rebar_hermeticity.erl
-new file mode 100644
-index 0000000..8f6cc7d
---- /dev/null
+index e69de29b..8f6cc7d0 100644
+--- a/src/rebar_hermeticity.erl
 +++ b/src/rebar_hermeticity.erl
 @@ -0,0 +1,42 @@
 +%% -*- erlang-indent-level: 4;indent-tabs-mode: nil -*-
@@ -60,20 +59,20 @@ index 0000000..8f6cc7d
 +    ?ERROR("Request: ~p ~s", [Method, Url]),
 +    erlang:halt(1).
 diff --git a/src/rebar_pkg_resource.erl b/src/rebar_pkg_resource.erl
-index d588f24..9ac8ad4 100644
+index 2cf167ee..6080aaca 100644
 --- a/src/rebar_pkg_resource.erl
 +++ b/src/rebar_pkg_resource.erl
-@@ -109,7 +109,7 @@ make_vsn(_) ->
+@@ -127,7 +127,7 @@ make_vsn(_) ->
  request(Url, ETag) ->
-     HttpOptions = [{ssl, ssl_opts(Url)}, {relaxed, true} | rebar_utils:get_proxy_auth()],
- 
--    case httpc:request(get, {Url, [{"if-none-match", ETag} || ETag =/= false]++[{"User-Agent", rebar_utils:user_agent()}]},
-+    case rebar_hermeticity:request(get, {Url, [{"if-none-match", ETag} || ETag =/= false]++[{"User-Agent", rebar_utils:user_agent()}]},
-                        HttpOptions,
-                        [{body_format, binary}],
-                        rebar) of
+     HttpOptions = [{ssl, ssl_opts(Url)},
+                    {relaxed, true} | rebar_utils:get_proxy_auth()],
+-    case httpc:request(get, {Url, [{"if-none-match", "\"" ++ ETag ++ "\""}
++    case rebar_hermeticity:request(get, {Url, [{"if-none-match", "\"" ++ ETag ++ "\""}
+                                    || ETag =/= false] ++
+                              [{"User-Agent", rebar_utils:user_agent()}]},
+                        HttpOptions, [{body_format, binary}], rebar) of
 diff --git a/src/rebar_prv_update.erl b/src/rebar_prv_update.erl
-index a019c5a..697cbab 100644
+index 17446311..4d44d794 100644
 --- a/src/rebar_prv_update.erl
 +++ b/src/rebar_prv_update.erl
 @@ -38,6 +38,8 @@ init(State) ->
@@ -85,17 +84,17 @@ index a019c5a..697cbab 100644
  do(State) ->
      try
          case rebar_packages:registry_dir(State) of
-@@ -52,7 +54,7 @@ do(State) ->
-                 case rebar_utils:url_append_path(CDN, ?REMOTE_REGISTRY_FILE) of
+@@ -53,7 +55,7 @@ do(State) ->
                      {ok, Url} ->
+                         HttpOptions = [{relaxed, true} | rebar_utils:get_proxy_auth()],
                          ?DEBUG("Fetching registry from ~p", [Url]),
 -                        case httpc:request(get, {Url, [{"User-Agent", rebar_utils:user_agent()}]},
 +                        case rebar_hermeticity:request(get, {Url, [{"User-Agent", rebar_utils:user_agent()}]},
-                                            [], [{stream, TmpFile}, {sync, true}],
+                                            HttpOptions, [{stream, TmpFile}, {sync, true}],
                                             rebar) of
                              {ok, saved_to_file} ->
-@@ -76,6 +78,7 @@ do(State) ->
-             ?DEBUG("Error creating package index: ~p ~p", [C, erlang:get_stacktrace()]),
+@@ -77,6 +79,7 @@ do(State) ->
+             ?DEBUG("Error creating package index: ~p ~p", [C, S]),
              throw(?PRV_ERROR(package_index_write))
      end.
 +-endif.

From 74ca35bd819e644fd43d45daab513e01277a9756 Mon Sep 17 00:00:00 2001
From: Vincent Ambo <mail@tazj.in>
Date: Sat, 14 Jul 2018 14:27:53 +0200
Subject: [PATCH 031/139] hex2nix: 0.0.6 -> 0.0.6-a31eadd7

Updates hex2nix to a new version that includes pinned dependencies.
This allows building hex2nix even if newer versions of dependencies
than what is packaged in `hex-packages.nix` are available in the
package snapshot.

The version of ibrowse used has been downgraded due to an issue in the
library. Custom builds of the ibrowse and jsx dependencies have been
removed from the derivation.
---
 .../tools/erlang/hex2nix/default.nix          | 33 +++++++------------
 1 file changed, 12 insertions(+), 21 deletions(-)

diff --git a/pkgs/development/tools/erlang/hex2nix/default.nix b/pkgs/development/tools/erlang/hex2nix/default.nix
index 01d54c01bc7..082edb37a4f 100644
--- a/pkgs/development/tools/erlang/hex2nix/default.nix
+++ b/pkgs/development/tools/erlang/hex2nix/default.nix
@@ -1,32 +1,23 @@
-{ stdenv, fetchFromGitHub, buildRebar3, buildHex
+{ stdenv, fetchFromGitHub, buildRebar3, buildHex,
 
-, getopt_0_8_2, erlware_commons_1_0_0 }:
+  # Erlang dependencies:
+  ibrowse_4_2_2,
+  getopt_0_8_2,
+  erlware_commons_1_0_0,
+  jsx_2_8_0 }:
 
-let
-  ibrowse_4_4_0 = buildHex {
-    name = "ibrowse";
-    version = "4.4.0";
-    sha256 = "1hpic1xgksfm00mbl1kwmszca6jmjca32s7gdd8g11i0hy45k3ka";
-  };
-  jsx_2_8_2 = buildHex {
-    name = "jsx";
-    version = "2.8.2";
-    sha256 = "0k7lnmwqbgpmh90wy30kc0qlddkbh9r3sjlyayaqsz1r1cix7idl";
-  };
-
-in
 buildRebar3 rec {
     name = "hex2nix";
-    version = "0.0.6";
+    version = "0.0.6-a31eadd7";
 
     src = fetchFromGitHub {
-      owner = "erlang-nix";
-      repo = "hex2nix";
-      rev = "${version}";
-      sha256 = "17rkzg836v7z2xf0i5m8zqfvr23dbmw1bi3c83km92f9glwa1dbf";
+      owner  = "erlang-nix";
+      repo   = "hex2nix";
+      rev    = "a31eadd7af2cbdac1b87991b378e98ea4fb40ae0";
+      sha256 = "1hnkrksyrbpq2gq25rfsrnm86n0g3biab88gswm3zj88ddrz6dyk";
     };
 
-    beamDeps = [ ibrowse_4_4_0 jsx_2_8_2 erlware_commons_1_0_0 getopt_0_8_2 ];
+    beamDeps = [ ibrowse_4_2_2 jsx_2_8_0 erlware_commons_1_0_0 getopt_0_8_2 ];
 
     enableDebugInfo = true;
 

From be2fc161040a6b07c7ff7ac22601143f61d1fa26 Mon Sep 17 00:00:00 2001
From: Vladyslav M <dywedir@pm.me>
Date: Sat, 14 Jul 2018 21:32:15 +0300
Subject: [PATCH 032/139] gutenberg: 0.3.1 -> 0.3.4 (#43513)

---
 pkgs/applications/misc/gutenberg/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/misc/gutenberg/default.nix b/pkgs/applications/misc/gutenberg/default.nix
index 7a04bd7194f..8ab84022181 100644
--- a/pkgs/applications/misc/gutenberg/default.nix
+++ b/pkgs/applications/misc/gutenberg/default.nix
@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   name = "gutenberg-${version}";
-  version = "0.3.1";
+  version = "0.3.4";
 
   src = fetchFromGitHub {
     owner = "Keats";
     repo = "gutenberg";
     rev = "v${version}";
-    sha256 = "03zhbwxp4dbqydiydx0hpp3vpg769zzn5i95h2sl868mpfia8gyd";
+    sha256 = "1v26q1m3bx7mdmmwgd6p601ncf13rr4rrx9s06fiy8vnd0ar1vlf";
   };
 
-  cargoSha256 = "0441lbmxx16aar6fn651ihk3psrx0lk3qdbbyih05xjlkkbk1qxs";
+  cargoSha256 = "0cdy0wvibkpnmlqwxvn02a2k2vqy6zdqzflj2dh6g1cjbz1j8qh5";
 
   nativeBuildInputs = [ cmake ];
   buildInputs = stdenv.lib.optionals stdenv.isDarwin [ CoreServices cf-private ];
@@ -29,7 +29,7 @@ rustPlatform.buildRustPackage rec {
     description = "An opinionated static site generator with everything built-in";
     homepage = https://www.getgutenberg.io;
     license = licenses.mit;
-    maintainers = [];
+    maintainers = with maintainers; [ dywedir ];
     platforms = platforms.all;
   };
 }

From 56b5e7340928c04970393855a3af1d17e24659fa Mon Sep 17 00:00:00 2001
From: Vladyslav M <dywedir@pm.me>
Date: Sat, 14 Jul 2018 21:33:02 +0300
Subject: [PATCH 033/139] mdbook: 0.1.7 -> 0.1.8 (#43514)

---
 pkgs/tools/text/mdbook/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/text/mdbook/default.nix b/pkgs/tools/text/mdbook/default.nix
index 30f5b6ceaba..36368e172a2 100644
--- a/pkgs/tools/text/mdbook/default.nix
+++ b/pkgs/tools/text/mdbook/default.nix
@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   name = "mdbook-${version}";
-  version = "0.1.7";
+  version = "0.1.8";
 
   src = fetchFromGitHub {
     owner = "rust-lang-nursery";
     repo = "mdBook";
-    rev = "ea0b835b38aba9566c1cc50ad119fbbf2c56f59d";
-    sha256 = "0jkyys8dg5mchbj8b73mmzsgv0k0zp7knima9s69s5ybplmd2n8s";
+    rev = "v${version}";
+    sha256 = "1xmw4v19ff6mvimwk5l437wslzw5npy60zdb8r4319bjf32pw9pn";
   };
 
-  cargoSha256 = "0w3slfzm29pkyr6zhr7k9rx9mddh42asyb46bzy57j0a2qvan3k4";
+  cargoSha256 = "0kcc0b2644qbalz7dnqwxsjdmw1h57k0rjrvwqh8apj2sgl64gyv";
 
   buildInputs = stdenv.lib.optionals stdenv.isDarwin [ CoreServices ];
 

From c4fca6498083590d13d0b008b86e2f8285f2d0ff Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Sat, 14 Jul 2018 19:58:46 +0200
Subject: [PATCH 034/139] signal-desktop: 1.14.0 -> 1.14.1

---
 .../networking/instant-messengers/signal-desktop/default.nix  | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
index 39043b43936..fcdc1610134 100644
--- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
+++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
@@ -40,11 +40,11 @@ let
 
 in stdenv.mkDerivation rec {
   name = "signal-desktop-${version}";
-  version = "1.14.0";
+  version = "1.14.1";
 
   src = fetchurl {
     url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb";
-    sha256 = "1f76dzm9qq12i4s95c51d9s923n69y8cbg8yz79qjpd6k30j8vkq";
+    sha256 = "1f54azqdfqa2yrzlp9b7pz7nswl5n3pgln38yxcvb3y5k6x0ljqp";
   };
 
   phases = [ "unpackPhase" "installPhase" ];

From cbb943eff03d622dc0eab04ebd6d0b8d72ff9ca6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:41:22 -0700
Subject: [PATCH 035/139] mate.mate-calc: 1.20.2 -> 1.21.0 (#43174)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/mate-calc/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/pj0sfjgfdibchfcjxmw8hqqz6b3733vf-mate-calc-1.21.0/bin/mate-calc had a zero exit code or showed the expected version
- /nix/store/pj0sfjgfdibchfcjxmw8hqqz6b3733vf-mate-calc-1.21.0/bin/mate-calc-cmd passed the binary check.
- Warning: no invocation of /nix/store/pj0sfjgfdibchfcjxmw8hqqz6b3733vf-mate-calc-1.21.0/bin/.mate-calculator-wrapped had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/pj0sfjgfdibchfcjxmw8hqqz6b3733vf-mate-calc-1.21.0/bin/mate-calculator had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/pj0sfjgfdibchfcjxmw8hqqz6b3733vf-mate-calc-1.21.0/bin/.mate-calc-wrapped had a zero exit code or showed the expected version
- /nix/store/pj0sfjgfdibchfcjxmw8hqqz6b3733vf-mate-calc-1.21.0/bin/.mate-calc-cmd-wrapped passed the binary check.
- 2 of 6 passed binary check by having a zero exit code.
- 0 of 6 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/pj0sfjgfdibchfcjxmw8hqqz6b3733vf-mate-calc-1.21.0
- directory tree listing: https://gist.github.com/5dedfa9ca0998bbe4bc5a135a203e38d
- du listing: https://gist.github.com/aa96b097f6ceb6a2b427396a17d41e73
---
 pkgs/desktops/mate/mate-calc/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-calc/default.nix b/pkgs/desktops/mate/mate-calc/default.nix
index 52f21225cbb..a4d7e0a2098 100644
--- a/pkgs/desktops/mate/mate-calc/default.nix
+++ b/pkgs/desktops/mate/mate-calc/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-calc-${version}";
-  version = "1.20.2";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "1ghz03j9lfgrjrh8givsw83dpbkw4wlhq4ar3r5g1bf1z636jlx0";
+    sha256 = "07mmc99wwgqbp15zrr6z7iz0frc388z19jwk28ymyzgn6bcc9cn6";
   };
 
   nativeBuildInputs = [

From fb646ae2059a5009b3074e98ac2922c81294435b Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:43:22 -0700
Subject: [PATCH 036/139] mate.mate-terminal: 1.20.1 -> 1.21.0 (#43180)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/mate-terminal/versions.

These checks were done:

- built on NixOS
- /nix/store/pkwgjc2972cx5yicsppl6ivkrbl9sflh-mate-terminal-1.21.0/bin/mate-terminal passed the binary check.
- /nix/store/pkwgjc2972cx5yicsppl6ivkrbl9sflh-mate-terminal-1.21.0/bin/mate-terminal.wrapper passed the binary check.
- /nix/store/pkwgjc2972cx5yicsppl6ivkrbl9sflh-mate-terminal-1.21.0/bin/.mate-terminal-wrapped passed the binary check.
- /nix/store/pkwgjc2972cx5yicsppl6ivkrbl9sflh-mate-terminal-1.21.0/bin/.mate-terminal.wrapper-wrapped passed the binary check.
- 4 of 4 passed binary check by having a zero exit code.
- 0 of 4 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/pkwgjc2972cx5yicsppl6ivkrbl9sflh-mate-terminal-1.21.0
- directory tree listing: https://gist.github.com/cbbde60e233e1916f09d61e0a3e6e306
- du listing: https://gist.github.com/21079e9340adbd98c94647457231e080
---
 pkgs/desktops/mate/mate-terminal/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-terminal/default.nix b/pkgs/desktops/mate/mate-terminal/default.nix
index 036f996da6a..a2f35284f4e 100644
--- a/pkgs/desktops/mate/mate-terminal/default.nix
+++ b/pkgs/desktops/mate/mate-terminal/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-terminal-${version}";
-  version = "1.20.1";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "0yfr857mpxy35zzdmicvd7mpwka8s1h0rqagfjqc2p1gv4a7ka97";
+    sha256 = "15vx7b5nbjbym22pz3l3cyqhv4dnd6vl2hb56xhwq625aw2a7chv";
   };
 
   buildInputs = [

From d8fff2cc0e7d85552903384217b2bb0b44cfbbe6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:44:43 -0700
Subject: [PATCH 037/139] mate.mate-system-monitor: 1.20.1 -> 1.21.0 (#43187)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/mate-system-monitor/versions.

These checks were done:

- built on NixOS
- /nix/store/r2kdrj4kv3ljxdv8l9m6k5ihpij628s5-mate-system-monitor-1.21.0/bin/mate-system-monitor passed the binary check.
- /nix/store/r2kdrj4kv3ljxdv8l9m6k5ihpij628s5-mate-system-monitor-1.21.0/bin/.mate-system-monitor-wrapped passed the binary check.
- 2 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/r2kdrj4kv3ljxdv8l9m6k5ihpij628s5-mate-system-monitor-1.21.0
- directory tree listing: https://gist.github.com/f4f7bd0ff2528925fb7906a6dba7a165
- du listing: https://gist.github.com/a529d5cc92ba18328a47ad40d4a87b2a
---
 pkgs/desktops/mate/mate-system-monitor/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-system-monitor/default.nix b/pkgs/desktops/mate/mate-system-monitor/default.nix
index 0dc21f27673..0f281cfc004 100644
--- a/pkgs/desktops/mate/mate-system-monitor/default.nix
+++ b/pkgs/desktops/mate/mate-system-monitor/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-system-monitor-${version}";
-  version = "1.20.1";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "1a68il7pbch5028fm2caxyjkfrdc6ixhqnaspbwfziw6y8p9bscn";
+    sha256 = "0filf6qyw4fk45br3cridbqdngwl525z49zn36r7q4agzhny4phz";
   };
 
   nativeBuildInputs = [

From f735e88bd28bbc77d64dff25a4074312c6c85b82 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:46:28 -0700
Subject: [PATCH 038/139] mate.mate-sensors-applet: 1.20.2 -> 1.21.0 (#43185)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/mate-sensors-applet/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/4l932vamscavmky2lgamncxphnyz3q5h-mate-sensors-applet-1.21.0
- directory tree listing: https://gist.github.com/c35172fcab62bda25f00c14783d252cd
- du listing: https://gist.github.com/458d0a68a4ec6d48c6798976072f2d53
---
 pkgs/desktops/mate/mate-sensors-applet/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-sensors-applet/default.nix b/pkgs/desktops/mate/mate-sensors-applet/default.nix
index b108a20d5f0..a317b175f9b 100644
--- a/pkgs/desktops/mate/mate-sensors-applet/default.nix
+++ b/pkgs/desktops/mate/mate-sensors-applet/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-sensors-applet-${version}";
-  version = "1.20.2";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "0khxzwjjf2gp9ma6ji0ynvvqlw6hhr8j4gff9klkrn60xbg5h16b";
+    sha256 = "1l84hfxz5qzipchxxi5whccq5d0kg9c8fxisar8pbckl6763b4dx";
   };
 
   nativeBuildInputs = [

From e2799bec4dd3d90d34d52ad1ea2ac15f84ba199a Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:47:42 -0700
Subject: [PATCH 039/139] mate.mate-power-manager: 1.20.2 -> 1.21.0 (#43182)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/mate-power-manager/versions.

These checks were done:

- built on NixOS
- /nix/store/3p5n72sk436hkj88ndbws85n3sjpjws6-mate-power-manager-1.21.0/bin/mate-power-manager passed the binary check.
- /nix/store/3p5n72sk436hkj88ndbws85n3sjpjws6-mate-power-manager-1.21.0/bin/mate-power-preferences passed the binary check.
- /nix/store/3p5n72sk436hkj88ndbws85n3sjpjws6-mate-power-manager-1.21.0/bin/mate-power-statistics passed the binary check.
- /nix/store/3p5n72sk436hkj88ndbws85n3sjpjws6-mate-power-manager-1.21.0/bin/.mate-power-manager-wrapped passed the binary check.
- /nix/store/3p5n72sk436hkj88ndbws85n3sjpjws6-mate-power-manager-1.21.0/bin/.mate-power-preferences-wrapped passed the binary check.
- /nix/store/3p5n72sk436hkj88ndbws85n3sjpjws6-mate-power-manager-1.21.0/bin/.mate-power-statistics-wrapped passed the binary check.
- /nix/store/3p5n72sk436hkj88ndbws85n3sjpjws6-mate-power-manager-1.21.0/bin/mate-power-backlight-helper passed the binary check.
- 7 of 7 passed binary check by having a zero exit code.
- 2 of 7 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/3p5n72sk436hkj88ndbws85n3sjpjws6-mate-power-manager-1.21.0
- directory tree listing: https://gist.github.com/1e52186ae9e0f46684d551318ba77db0
- du listing: https://gist.github.com/c94ea5d841ae308a842d899ce7685a0b
---
 pkgs/desktops/mate/mate-power-manager/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-power-manager/default.nix b/pkgs/desktops/mate/mate-power-manager/default.nix
index e2b50127b89..14f5f044373 100644
--- a/pkgs/desktops/mate/mate-power-manager/default.nix
+++ b/pkgs/desktops/mate/mate-power-manager/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-power-manager-${version}";
-  version = "1.20.2";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "1z754jxnwashwxxfg3cxb9ifbqyjxgavzzwy2mjnzl6z7k95hvjh";
+    sha256 = "1l7rxv16j95w26igs4n7fdfv5hqm91b9ddc1lw5m26s42nkzzf85";
   };
 
   buildInputs = [

From c566d53489f4f0305b3261770b610b66115a1eed Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:48:01 -0700
Subject: [PATCH 040/139] mate.mate-settings-daemon: 1.20.3 -> 1.21.0 (#43177)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/mate-settings-daemon/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/vl1l0mhq9d8rdrsk7x9jlwkm4va2fgkd-mate-settings-daemon-1.21.0
- directory tree listing: https://gist.github.com/147e77ed6eab9ee14d1ce2dd1228a1ec
- du listing: https://gist.github.com/63c6df92545f5c99dbbcce75dcb3f7c5
---
 pkgs/desktops/mate/mate-settings-daemon/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-settings-daemon/default.nix b/pkgs/desktops/mate/mate-settings-daemon/default.nix
index cf63e3e69d9..6a24e67d2c7 100644
--- a/pkgs/desktops/mate/mate-settings-daemon/default.nix
+++ b/pkgs/desktops/mate/mate-settings-daemon/default.nix
@@ -4,11 +4,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-settings-daemon-${version}";
-  version = "1.20.3";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "018f2yg4jd6hy0z7ks0s3jyjgpyi3vhd9j61951v5lb1x8ckzxhk";
+    sha256 = "1k0xbwxpv3wfl7z3hgaf2ylzaz3aky4j7awdy8cfgxr0d6nqhp3w";
   };
 
   nativeBuildInputs = [

From 0dd04a02835c1cbb1fc563a122d6cd9193c0750c Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:48:19 -0700
Subject: [PATCH 041/139] mate.mate-applets: 1.20.2 -> 1.21.0 (#43176)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/mate-applets/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/6q9mwpgw42jld019cnn6ka513c8zw1sc-mate-applets-1.21.0/bin/mate-cpufreq-selector had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/6q9mwpgw42jld019cnn6ka513c8zw1sc-mate-applets-1.21.0/bin/.mate-cpufreq-selector-wrapped had a zero exit code or showed the expected version
- 0 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/6q9mwpgw42jld019cnn6ka513c8zw1sc-mate-applets-1.21.0
- directory tree listing: https://gist.github.com/a0ab2cac21cf6cae44f410df2b5c6284
- du listing: https://gist.github.com/0c9f7376cb17ad1d5e2a1bce03520edc
---
 pkgs/desktops/mate/mate-applets/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-applets/default.nix b/pkgs/desktops/mate/mate-applets/default.nix
index f154829c4cb..eda4e9b05bc 100644
--- a/pkgs/desktops/mate/mate-applets/default.nix
+++ b/pkgs/desktops/mate/mate-applets/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-applets-${version}";
-  version = "1.20.2";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "0c860yxbphpvci281gj78ipw1rvcka4rr0bxwvg0nkpangdhj9ls";
+    sha256 = "0jr66xrwjrlyh4hz6h5axh96pgxm8n1xyc0rmggah2fijs940rsb";
   };
 
   nativeBuildInputs = [

From 33413ba38ab051e3c9721b99835375cb31861a04 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:48:32 -0700
Subject: [PATCH 042/139] mate.mate-menus: 1.20.1 -> 1.21.0 (#43183)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/mate-menus/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/3q42pbw9k7jimz7bjskcavl6lic263m5-mate-menus-1.21.0
- directory tree listing: https://gist.github.com/abc03dc52627bfc19e82224f6f78572a
- du listing: https://gist.github.com/45f9a8095638ecb7723fa12bab366074
---
 pkgs/desktops/mate/mate-menus/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-menus/default.nix b/pkgs/desktops/mate/mate-menus/default.nix
index 9815952c540..957da4504eb 100644
--- a/pkgs/desktops/mate/mate-menus/default.nix
+++ b/pkgs/desktops/mate/mate-menus/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-menus-${version}";
-  version = "1.20.1";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "1p8pkw6aby2hq2liqrnsf3lvyn2jqamfbs83fv6q7clw5w179sy6";
+    sha256 = "168f7jgm4kbnx92xh3iqvvrgpkv1q862xg27zxg40nkz5xhk95hx";
   };
 
   nativeBuildInputs = [ pkgconfig intltool ];

From 4a6c45939a623c9805922fa99d0da333e76789b8 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:48:56 -0700
Subject: [PATCH 043/139] mate.marco: 1.20.2 -> 1.21.0 (#43175)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/marco/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0/bin/marco-message had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0/bin/marco-window-demo had a zero exit code or showed the expected version
- /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0/bin/marco passed the binary check.
- Warning: no invocation of /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0/bin/marco-theme-viewer had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0/bin/.marco-message-wrapped had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0/bin/.marco-window-demo-wrapped had a zero exit code or showed the expected version
- /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0/bin/.marco-wrapped passed the binary check.
- Warning: no invocation of /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0/bin/.marco-theme-viewer-wrapped had a zero exit code or showed the expected version
- 2 of 8 passed binary check by having a zero exit code.
- 0 of 8 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/105g04v1faqwfb457slg5igkwsi9qqdf-marco-1.21.0
- directory tree listing: https://gist.github.com/7234306294e99b33fef6a86358544611
- du listing: https://gist.github.com/8c742fd13a9c7ded57bc11be9c669b95
---
 pkgs/desktops/mate/marco/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/marco/default.nix b/pkgs/desktops/mate/marco/default.nix
index c1c6d96688b..e2c2a54bc74 100644
--- a/pkgs/desktops/mate/marco/default.nix
+++ b/pkgs/desktops/mate/marco/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "marco-${version}";
-  version = "1.20.2";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "1fn0yfqjp44gr4kly96qjsd73x06z1xyw6bpyhh09kdqwd80rgiy";
+    sha256 = "1vg3dl7kqhzgspa2ykyql4j3bpki59769qrkakqfdcavb9j5c877";
   };
 
   nativeBuildInputs = [

From 2518f2ca6cf7eb7866c9f50cb7f5f4895934e709 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:49:14 -0700
Subject: [PATCH 044/139] mate.libmatekbd: 1.20.2 -> 1.21.0 (#43193)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/libmatekbd/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/gff3905ialfwgrpwyrhgaz56k1qzsphp-libmatekbd-1.21.0
- directory tree listing: https://gist.github.com/a9d8fc76f7c7e6f7b94c3c70dbf27d18
- du listing: https://gist.github.com/57420f2d15d064e6e84c8b2b3c6feaa1
---
 pkgs/desktops/mate/libmatekbd/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/libmatekbd/default.nix b/pkgs/desktops/mate/libmatekbd/default.nix
index 15b81a62886..842ab5b214d 100644
--- a/pkgs/desktops/mate/libmatekbd/default.nix
+++ b/pkgs/desktops/mate/libmatekbd/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "libmatekbd-${version}";
-  version = "1.20.2";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "1l1zbphs4snswf4bkrwkk6gsmb44bdhymcfgaaspzbrcmw3y7hr1";
+    sha256 = "0xi5ds2psbf0qb0363ljxz5m9xxh1hr2hcn8zv6ni6mdqsqnkajz";
   };
 
   nativeBuildInputs = [ pkgconfig intltool ];

From f62882f5b8743e1c7ca81c7fd13aafc2b063ce7b Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:49:34 -0700
Subject: [PATCH 045/139] mate.libmatemixer: 1.20.1 -> 1.21.0 (#43192)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/libmatemixer/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/rf6swqf4zz4aqbis00vmga92jz30lnqz-libmatemixer-1.21.0
- directory tree listing: https://gist.github.com/26d3098e20c8910a026178b4deba670a
- du listing: https://gist.github.com/e928bc54962d0f4e091f69990262af22
---
 pkgs/desktops/mate/libmatemixer/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/libmatemixer/default.nix b/pkgs/desktops/mate/libmatemixer/default.nix
index 8bf0d9bec18..dab73ed3499 100644
--- a/pkgs/desktops/mate/libmatemixer/default.nix
+++ b/pkgs/desktops/mate/libmatemixer/default.nix
@@ -6,11 +6,11 @@
 
 stdenv.mkDerivation rec {
   name = "libmatemixer-${version}";
-  version = "1.20.1";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "00p67mi0flsbgn15qpwq60rzf917s5islbmhirbvz6npcvv0d493";
+    sha256 = "1376x3rlisrc6hsz6yzi637msplmacxryyqnrsgfc580knp1nrvm";
   };
 
   nativeBuildInputs = [ pkgconfig intltool ];

From c564b5689510058fc7ad6f71458cfcbe02f87c88 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:49:50 -0700
Subject: [PATCH 046/139] mate.libmateweather: 1.20.1 -> 1.21.0 (#43191)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/libmateweather/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.21.0 with grep in /nix/store/ksayjrqlh72h4lzyqwdwzzr193ygl0xb-libmateweather-1.21.0
- directory tree listing: https://gist.github.com/77147d67fc7b1421588d484ca7a98dec
- du listing: https://gist.github.com/a93673e3e9aba588db3b7595bd49248a
---
 pkgs/desktops/mate/libmateweather/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/libmateweather/default.nix b/pkgs/desktops/mate/libmateweather/default.nix
index 9a7ba4f006f..e6769a2e978 100644
--- a/pkgs/desktops/mate/libmateweather/default.nix
+++ b/pkgs/desktops/mate/libmateweather/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "libmateweather-${version}";
-  version = "1.20.1";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "0bp1nn3b5gf5nqrdwl43fxbb82j74s3x8jkmp40ilv2qpc2mxwr1";
+    sha256 = "1vj2pgry6wdscdcpwwagqlsjf8rkh4id67iw7d9qk1pfbhb2sznl";
   };
 
   nativeBuildInputs = [ pkgconfig intltool ];

From 870355aa57d3d28e886b64e9817e0df98410add0 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:53:42 -0700
Subject: [PATCH 047/139] mate.mate-utils: 1.20.1 -> 1.21.0 (#43338)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/mate-utils/versions.
---
 pkgs/desktops/mate/mate-utils/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/mate/mate-utils/default.nix b/pkgs/desktops/mate/mate-utils/default.nix
index 8ea8ab33700..e4cd9126dfa 100644
--- a/pkgs/desktops/mate/mate-utils/default.nix
+++ b/pkgs/desktops/mate/mate-utils/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "mate-utils-${version}";
-  version = "1.20.1";
+  version = "1.21.0";
 
   src = fetchurl {
     url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz";
-    sha256 = "1kr0612h6r2gj3yg4ccyzr844lh640cd4wdj3gl8qzqikjx0n7ka";
+    sha256 = "0q05zzxgwwk7af05yzcjixjd8hi8cqykirj43g60ikhzym009n4q";
   };
 
   nativeBuildInputs = [

From 1023e69d38d0d7c4a41cb94b3759b5157b581b87 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 11:54:08 -0700
Subject: [PATCH 048/139] adapta-gtk-theme: 3.93.1.28 -> 3.94.0.1 (#43373)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/adapta-gtk-theme/versions.
---
 pkgs/misc/themes/adapta/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/misc/themes/adapta/default.nix b/pkgs/misc/themes/adapta/default.nix
index 5c2cab90df4..f7c920abc48 100644
--- a/pkgs/misc/themes/adapta/default.nix
+++ b/pkgs/misc/themes/adapta/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "adapta-gtk-theme-${version}";
-  version = "3.93.1.28";
+  version = "3.94.0.1";
 
   src = fetchFromGitHub {
     owner = "adapta-project";
     repo = "adapta-gtk-theme";
     rev = version;
-    sha256 = "0r7fsyy074xd63p58fin3qsfq1535wafk0nag49551915hgdr18n";
+    sha256 = "17hck0hzkdj1bibn9wi7cxca8r539idb916v2l71gz7ynhav006d";
   };
 
   preferLocalBuild = true;

From 0f55c401867ec098330c034417c40cbbdc58749b Mon Sep 17 00:00:00 2001
From: Jens Binkert <jensbin+git@pm.me>
Date: Sat, 14 Jul 2018 20:59:42 +0200
Subject: [PATCH 049/139] terraform-provider-ibm: 0.11.0 -> 0.11.1 (#43516)

---
 .../networking/cluster/terraform-provider-ibm/default.nix     | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/cluster/terraform-provider-ibm/default.nix b/pkgs/applications/networking/cluster/terraform-provider-ibm/default.nix
index 69de076cd1c..ad4edec6b4e 100644
--- a/pkgs/applications/networking/cluster/terraform-provider-ibm/default.nix
+++ b/pkgs/applications/networking/cluster/terraform-provider-ibm/default.nix
@@ -12,7 +12,7 @@
 
 buildGoPackage rec {
   name = "terraform-provider-ibm-${version}";
-  version = "0.11.0";
+  version = "0.11.1";
 
   goPackagePath = "github.com/terraform-providers/terraform-provider-ibm";
   subPackages = [ "./" ];
@@ -20,7 +20,7 @@ buildGoPackage rec {
   src = fetchFromGitHub {
     owner = "IBM-Cloud";
     repo = "terraform-provider-ibm";
-    sha256 = "0zgzzs2l9p06angqw6vjpkd88gcn2mswmmwycc31ihkglzs6yw2p";
+    sha256 = "1vp1kzadfkacn6c4illxjra8yki1fx7h77b38fixkcvc79mzasmv";
     rev = "v${version}";
   };
 

From 06ec2a9f196be3b431b05bf955da32efcce71ce2 Mon Sep 17 00:00:00 2001
From: Yuriy Taraday <yorik.sar@gmail.com>
Date: Sat, 14 Jul 2018 01:40:18 +0400
Subject: [PATCH 050/139] chromium: fix 68 (beta) build

Also replace openh264 patch with one landed in upstream.
---
 .../networking/browsers/chromium/common.nix          |  7 ++++++-
 .../browsers/chromium/patches/fix-openh264.patch     | 10 ----------
 .../chromium/patches/nix_plugin_paths_68.patch       |  2 +-
 .../chromium/patches/remove-webp-include-68.patch    | 12 ++++++++++++
 .../chromium/patches/remove-webp-include-69.patch    | 11 +++++++++++
 5 files changed, 30 insertions(+), 12 deletions(-)
 delete mode 100644 pkgs/applications/networking/browsers/chromium/patches/fix-openh264.patch
 create mode 100644 pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-68.patch
 create mode 100644 pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-69.patch

diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix
index dbfd4753416..021c048669f 100644
--- a/pkgs/applications/networking/browsers/chromium/common.nix
+++ b/pkgs/applications/networking/browsers/chromium/common.nix
@@ -142,13 +142,18 @@ let
       # https://git.archlinux.org/svntogit/packages.git/tree/trunk?h=packages/chromium
       # for updated patches and hints about build flags
     # (gentooPatch "<patch>" "0000000000000000000000000000000000000000000000000000000000000000")
-      ./patches/fix-openh264.patch
       ./patches/fix-freetype.patch
     ]  ++ optionals (versionRange "66" "68") [
       ./patches/nix_plugin_paths_52.patch
+      (githubPatch "4d10424f9e2a06978cdd6cdf5403fcaef18e49fc" "11la1jycmr5b5rw89mzcdwznmd2qh28sghvz9klr1qhmsmw1vzjc")
     ]  ++ optionals (versionAtLeast version "68") [
       ./patches/nix_plugin_paths_68.patch
+    ]  ++ optionals (versionRange "68" "69") [
+      ./patches/remove-webp-include-68.patch
+      (githubPatch "4d10424f9e2a06978cdd6cdf5403fcaef18e49fc" "11la1jycmr5b5rw89mzcdwznmd2qh28sghvz9klr1qhmsmw1vzjc")
       (githubPatch "56cb5f7da1025f6db869e840ed34d3b98b9ab899" "04mp5r1yvdvdx6m12g3lw3z51bzh7m3gr73mhblkn4wxdbvi3dcs")
+    ]  ++ optionals (versionAtLeast version "69") [
+      ./patches/remove-webp-include-69.patch
     ] ++ optional enableWideVine ./patches/widevine.patch;
 
     postPatch = ''
diff --git a/pkgs/applications/networking/browsers/chromium/patches/fix-openh264.patch b/pkgs/applications/networking/browsers/chromium/patches/fix-openh264.patch
deleted file mode 100644
index 9d9ed6d2d05..00000000000
--- a/pkgs/applications/networking/browsers/chromium/patches/fix-openh264.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- a/third_party/openh264/BUILD.gn
-+++ b/third_party/openh264/BUILD.gn
-@@ -24,6 +24,7 @@ config("config") {
-   if (!is_win || is_clang) {
-     cflags += [
-       "-Wno-format",
-+      "-Wno-format-security",
-       "-Wno-header-hygiene",
-       "-Wno-unused-function",
-       "-Wno-unused-value",
diff --git a/pkgs/applications/networking/browsers/chromium/patches/nix_plugin_paths_68.patch b/pkgs/applications/networking/browsers/chromium/patches/nix_plugin_paths_68.patch
index c90e98e72fa..3c80dbcec00 100644
--- a/pkgs/applications/networking/browsers/chromium/patches/nix_plugin_paths_68.patch
+++ b/pkgs/applications/networking/browsers/chromium/patches/nix_plugin_paths_68.patch
@@ -26,7 +26,7 @@ index f4e119d..d9775bd 100644
 +  std::string full_env = std::string("NIX_CHROMIUM_PLUGIN_PATH_") + ident;
 +  const char* value = getenv(full_env.c_str());
 +  if (value == NULL)
-+      return PathService::Get(base::DIR_MODULE, result);
++      return base::PathService::Get(base::DIR_MODULE, result);
 +  else
 +      *result = base::FilePath(value);
  }
diff --git a/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-68.patch b/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-68.patch
new file mode 100644
index 00000000000..1995bf1fa8f
--- /dev/null
+++ b/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-68.patch
@@ -0,0 +1,12 @@
+--- a/third_party/blink/renderer/platform/image-encoders/image_encoder.h
++++ b/third_party/blink/renderer/platform/image-encoders/image_encoder.h
+@@ -8,7 +8,7 @@
+ #include "third_party/blink/renderer/platform/platform_export.h"
+ #include "third_party/blink/renderer/platform/wtf/vector.h"
+ #include "third_party/libjpeg/jpeglib.h"          // for JPEG_MAX_DIMENSION
+-#include "third_party/libwebp/src/webp/encode.h"  // for WEBP_MAX_DIMENSION
++#define WEBP_MAX_DIMENSION 16383
+ #include "third_party/skia/include/core/SkStream.h"
+ #include "third_party/skia/include/encode/SkJpegEncoder.h"
+ #include "third_party/skia/include/encode/SkPngEncoder.h"
+
diff --git a/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-69.patch b/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-69.patch
new file mode 100644
index 00000000000..07572cf7ee9
--- /dev/null
+++ b/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-69.patch
@@ -0,0 +1,11 @@
+--- a/third_party/blink/renderer/platform/image-encoders/image_encoder.cc
++++ b/third_party/blink/renderer/platform/image-encoders/image_encoder.cc
+@@ -13,7 +13,7 @@
+
+ #include "jpeglib.h"  // for JPEG_MAX_DIMENSION
+
+-#include "third_party/libwebp/src/webp/encode.h"  // for WEBP_MAX_DIMENSION
++#define WEBP_MAX_DIMENSION 16383
+
+ namespace blink {
+

From 59c365700b408054991d91b366bb200db2ec067b Mon Sep 17 00:00:00 2001
From: Kenny Shen <qoelet@users.noreply.github.com>
Date: Sat, 14 Jul 2018 19:07:52 +0000
Subject: [PATCH 051/139] gnu-pw-mgr: 2.3.2 -> 2.3.3 (#43533)

---
 pkgs/tools/security/gnu-pw-mgr/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/security/gnu-pw-mgr/default.nix b/pkgs/tools/security/gnu-pw-mgr/default.nix
index 23aec604d2d..e71d313e20a 100644
--- a/pkgs/tools/security/gnu-pw-mgr/default.nix
+++ b/pkgs/tools/security/gnu-pw-mgr/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   name = "gnu-pw-mgr-${version}";
-  version = "2.3.2";
+  version = "2.3.3";
   src = fetchurl {
     url = "http://ftp.gnu.org/gnu/gnu-pw-mgr/${name}.tar.xz";
-    sha256 = "0x60g0syqpd107l8w4bl213imy2lspm4kz1j18yr1sh10rdxlgxd";
+    sha256 = "04xh38j7l0sfnb01kp05xc908pvqfc0lph94k7n9bi46zy3qy7ma";
   };
 
   buildInputs = [ gnulib ];

From 1137200d6b7fcf8fc401b54e8292f24f09bfc11d Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Sat, 14 Jul 2018 19:11:17 +0000
Subject: [PATCH 052/139] xfce.xfce4-hardware-monitor-plugin: 1.5.0 -> 1.6.0
 (#43520)

---
 .../xfce/panel-plugins/xfce4-hardware-monitor-plugin.nix      | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/xfce/panel-plugins/xfce4-hardware-monitor-plugin.nix b/pkgs/desktops/xfce/panel-plugins/xfce4-hardware-monitor-plugin.nix
index cac09d0ad35..d18c3b8ee25 100644
--- a/pkgs/desktops/xfce/panel-plugins/xfce4-hardware-monitor-plugin.nix
+++ b/pkgs/desktops/xfce/panel-plugins/xfce4-hardware-monitor-plugin.nix
@@ -5,11 +5,11 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname  = "xfce4-hardware-monitor-plugin";
-  version = "1.5.0";
+  version = "1.6.0";
 
   src = fetchurl {
     url = "https://git.xfce.org/panel-plugins/${pname}/snapshot/${name}.tar.bz2";
-    sha256 = "0sqvisr8gagpywq9sfyzqw37hxmj54ii89j5s2g8hx8bng5a98z1";
+    sha256 = "0xg5har11fk1wmdymydxlbk1z8aa39j8k0p4gzw2iqslv3n0zf7b";
   };
 
   nativeBuildInputs = [

From 905e94bf4ab6cab673e70fd5cddd600fb87331ee Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 12:26:33 -0700
Subject: [PATCH 053/139] elfutils: 0.172 -> 0.173 (#43031)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/elfutils/versions.

These checks were done:

- built on NixOS
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-readelf passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-nm passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-size passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-strip passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-elflint passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-findtextrel passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-addr2line passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-elfcmp passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-objdump passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-ranlib passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-strings passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-ar passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-unstrip passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-stack passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-elfcompress passed the binary check.
- /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173/bin/eu-make-debug-archive passed the binary check.
- 16 of 16 passed binary check by having a zero exit code.
- 0 of 16 passed binary check by having the new version present in output.
- found 0.173 with grep in /nix/store/nmml2vhzia58ji531a4q1j97rrj308yj-elfutils-0.173
- directory tree listing: https://gist.github.com/f0b855207a6f13446e77907717da40dd
- du listing: https://gist.github.com/1275237e95e19d1956769a304945cc37
---
 pkgs/development/tools/misc/elfutils/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/misc/elfutils/default.nix b/pkgs/development/tools/misc/elfutils/default.nix
index 04a300c56f4..2ee573e4ba1 100644
--- a/pkgs/development/tools/misc/elfutils/default.nix
+++ b/pkgs/development/tools/misc/elfutils/default.nix
@@ -3,11 +3,11 @@
 # TODO: Look at the hardcoded paths to kernel, modules etc.
 stdenv.mkDerivation rec {
   name = "elfutils-${version}";
-  version = "0.172";
+  version = "0.173";
 
   src = fetchurl {
     url = "https://sourceware.org/elfutils/ftp/${version}/${name}.tar.bz2";
-    sha256 = "090fmbnvd9jblkwhb2bm3hanim63rrvd5f30mfxq4jac6kk9k73p";
+    sha256 = "1zq0l12k64hrbjmdjc4llrad96c25i427hpma1id9nk87w9qqvdp";
   };
 
   patches = ./debug-info-from-env.patch;

From 3d2e92ef002e29504665852a7583bf47c02d87e1 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 12:28:08 -0700
Subject: [PATCH 054/139] sshguard: 2.1.0 -> 2.2.0 (#43325)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/sshguard/versions.
---
 pkgs/tools/security/sshguard/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/security/sshguard/default.nix b/pkgs/tools/security/sshguard/default.nix
index 6db16c95fc8..facbfcad4cf 100644
--- a/pkgs/tools/security/sshguard/default.nix
+++ b/pkgs/tools/security/sshguard/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, autoreconfHook, yacc, flex}:
 
 stdenv.mkDerivation rec {
-  version = "2.1.0";
+  version = "2.2.0";
   name = "sshguard-${version}";
 
   src = fetchurl {
     url = "mirror://sourceforge/sshguard/${name}.tar.gz";
-    sha256 = "12h2rx40lf3p3kgazmgakkgajjk2d3sdvr2f73ghi15d6i42l991";
+    sha256 = "1hjn6smd6kc3yg2xm1kvszqpm5w9a6vic6a1spzy8czcwvz0gzra";
   };
 
   doCheck = true;

From 1c88d0c6bd0d632d58dd715dcf97a10618f0ac43 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Sat, 14 Jul 2018 14:49:47 -0500
Subject: [PATCH 055/139] z3: fix darwin build (#43526)

---
 pkgs/applications/science/logic/z3/default.nix | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/pkgs/applications/science/logic/z3/default.nix b/pkgs/applications/science/logic/z3/default.nix
index 10a52619276..1cbe914779e 100644
--- a/pkgs/applications/science/logic/z3/default.nix
+++ b/pkgs/applications/science/logic/z3/default.nix
@@ -27,9 +27,7 @@ stdenv.mkDerivation rec {
     mv $out/lib          $lib/lib
     mv $out/include      $dev/include
 
-    # clean up a copy of libz3.so and symlink it instead
-    rm $python/${python.sitePackages}/z3/lib/libz3.so
-    ln -s $lib/lib/libz3.so $python/${python.sitePackages}/z3/lib/libz3.so
+    ln -sf $lib/lib/libz3${stdenv.hostPlatform.extensions.sharedLibrary} $python/${python.sitePackages}/z3/lib/libz3${stdenv.hostPlatform.extensions.sharedLibrary}
   '';
 
   outputs = [ "out" "lib" "dev" "python" ];

From e458e1307c5b00178c32c8d4817f9c17634dabd4 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 12:51:42 -0700
Subject: [PATCH 056/139] mlt: 6.8.0 -> 6.10.0 (#43331)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/mlt/versions.
---
 pkgs/development/libraries/mlt/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/mlt/default.nix b/pkgs/development/libraries/mlt/default.nix
index 57b810c0b44..2d4de339042 100644
--- a/pkgs/development/libraries/mlt/default.nix
+++ b/pkgs/development/libraries/mlt/default.nix
@@ -6,13 +6,13 @@
 
 stdenv.mkDerivation rec {
   name = "mlt-${version}";
-  version = "6.8.0";
+  version = "6.10.0";
 
   src = fetchFromGitHub {
     owner = "mltframework";
     repo = "mlt";
     rev = "v${version}";
-    sha256 = "0hmxlz3i9yasw5jdkrczak8shzlnpi1acaahn50lvgg9b14kg7b8";
+    sha256 = "0ki86yslr5ywa6sz8pjrgd9a4rn2rr4mss2zkmqi7pq8prgsm1fr";
   };
 
   buildInputs = [

From 3ee321df4ea87e5f25dde417c1649a2b5cd324a2 Mon Sep 17 00:00:00 2001
From: Benjamin Saunders <ben.e.saunders@gmail.com>
Date: Sat, 14 Jul 2018 13:00:27 -0700
Subject: [PATCH 057/139] renderdoc: 0.91 -> 1.0 (#43159)

---
 .../graphics/renderdoc/custom_swig.patch      | 32 ----------
 .../graphics/renderdoc/default.nix            | 62 ++++++++-----------
 2 files changed, 25 insertions(+), 69 deletions(-)
 delete mode 100644 pkgs/applications/graphics/renderdoc/custom_swig.patch

diff --git a/pkgs/applications/graphics/renderdoc/custom_swig.patch b/pkgs/applications/graphics/renderdoc/custom_swig.patch
deleted file mode 100644
index e6ed05ea97a..00000000000
--- a/pkgs/applications/graphics/renderdoc/custom_swig.patch
+++ /dev/null
@@ -1,32 +0,0 @@
-diff --git a/qrenderdoc/CMakeLists.txt b/qrenderdoc/CMakeLists.txt
-index 2df9ffa5..66bafaba 100644
---- a/qrenderdoc/CMakeLists.txt
-+++ b/qrenderdoc/CMakeLists.txt
-@@ -65,16 +65,6 @@ include(ExternalProject)
- # Need bison for swig
- find_package(BISON)
- 
--# Compile our custom SWIG that will do scoped/strong enum classes
--ExternalProject_Add(custom_swig
--    # using an URL to a zip directly so we don't clone the history etc
--    URL ${RENDERDOC_SWIG_PACKAGE}
--    BUILD_IN_SOURCE 1
--    CONFIGURE_COMMAND ./autogen.sh > /dev/null 2>&1
--    COMMAND CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} ./configure --with-pcre=yes --prefix=${CMAKE_BINARY_DIR} > /dev/null
--    BUILD_COMMAND $(MAKE) > /dev/null 2>&1
--    INSTALL_COMMAND $(MAKE) install > /dev/null 2>&1)
--
- # Lastly find PySide 2, optionally, for Qt5 Python bindings
- list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}")
- 
-@@ -186,9 +176,8 @@ foreach(in ${swig_interfaces})
-     get_filename_component(swig_file ${in} NAME_WE)
- 
-     add_custom_command(OUTPUT ${swig_file}_python.cxx ${swig_file}.py
--            COMMAND ${CMAKE_BINARY_DIR}/bin/swig -v -Wextra -Werror -O -c++ -python -modern -modernargs -enumclass -fastunpack -py3 -builtin -I${CMAKE_CURRENT_SOURCE_DIR} -I${CMAKE_SOURCE_DIR}/renderdoc/api/replay -outdir ${CMAKE_CURRENT_BINARY_DIR} -o ${CMAKE_CURRENT_BINARY_DIR}/${swig_file}_python.cxx ${CMAKE_CURRENT_SOURCE_DIR}/${in}
-+	    COMMAND $ENV{NIXOS_CUSTOM_SWIG} -v -Wextra -Werror -O -c++ -python -modern -modernargs -enumclass -fastunpack -py3 -builtin -I${CMAKE_CURRENT_SOURCE_DIR} -I${CMAKE_SOURCE_DIR}/renderdoc/api/replay -outdir ${CMAKE_CURRENT_BINARY_DIR} -o ${CMAKE_CURRENT_BINARY_DIR}/${swig_file}_python.cxx ${CMAKE_CURRENT_SOURCE_DIR}/${in}
-             DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/${in}
--            DEPENDS custom_swig
-             DEPENDS ${RDOC_REPLAY_FILES}
-             DEPENDS ${QRD_INTERFACE_FILES})
- 
diff --git a/pkgs/applications/graphics/renderdoc/default.nix b/pkgs/applications/graphics/renderdoc/default.nix
index 2bd3ab89161..9a21d457a83 100644
--- a/pkgs/applications/graphics/renderdoc/default.nix
+++ b/pkgs/applications/graphics/renderdoc/default.nix
@@ -1,74 +1,62 @@
 { stdenv, fetchFromGitHub, cmake, pkgconfig
-, qtbase, qtx11extras, qtsvg, makeWrapper, python3, bison
-, pcre, vulkan-loader, xorg, autoreconfHook
+, qtbase, qtx11extras, qtsvg, makeWrapper
+, vulkan-loader, xorg
+, python36, bison, pcre, automake, autoconf
 }:
-
 let
-  custom_swig = stdenv.mkDerivation {
-    name = "renderdoc-custom-swig";
-    src = fetchFromGitHub {
-      owner = "baldurk";
-      repo = "swig";
-      rev = "renderdoc-modified-1";
-      sha256 = "1whymd3vamwnp4jqfc9asls3dw9wsdi21xhm1d2a4vx9nql8if1x";
-    };
-
-    nativeBuildInputs = [ autoreconfHook pcre ];
-
-    autoreconfPhase = ''
-      patchShebangs autogen.sh
-      ./autogen.sh
-    '';
+  custom_swig = fetchFromGitHub {
+    owner = "baldurk";
+    repo = "swig";
+    rev = "renderdoc-modified-5";
+    sha256 = "0ihrxbx56p5wn589fbbsns93fp91sypqdzfxdy7l7v9sf69a41mw";
   };
 in
 stdenv.mkDerivation rec {
+  version = "1.0";
   name = "renderdoc-${version}";
-  version = "0.91";
 
   src = fetchFromGitHub {
     owner = "baldurk";
     repo = "renderdoc";
-    rev = "2d8b2cf818746b6a2add54e2fef449398816a40c";
-    sha256 = "07yc3fk7j2nqmrhc4dm3v2pgbc37scd7d28nlzk6v0hw99zck8k0";
+    rev = "v${version}";
+    sha256 = "0l7pjxfrly4llryjnwk42dzx65n78wc98h56qm4yh04ja8fdbx2y";
   };
 
   buildInputs = [
-    qtbase qtsvg xorg.libpthreadstubs xorg.libXdmcp qtx11extras vulkan-loader
+    qtbase qtsvg xorg.libpthreadstubs xorg.libXdmcp qtx11extras vulkan-loader python36
   ];
 
-  nativeBuildInputs = [ cmake makeWrapper pkgconfig python3 bison ];
+  nativeBuildInputs = [ cmake makeWrapper pkgconfig bison pcre automake autoconf ];
+
+  postUnpack = ''
+    cp -r ${custom_swig} swig
+    chmod -R +w swig
+    patchShebangs swig/autogen.sh
+  '';
 
   cmakeFlags = [
     "-DBUILD_VERSION_HASH=${src.rev}"
     "-DBUILD_VERSION_DIST_NAME=NixOS"
-    "-DBUILD_VERSION_DIST_VER=0.91"
+    "-DBUILD_VERSION_DIST_VER=${version}"
     "-DBUILD_VERSION_DIST_CONTACT=https://github.com/NixOS/nixpkgs/tree/master/pkgs/applications/graphics/renderdoc"
-    "-DBUILD_VERSION_DIST_STABLE=ON"
-    # TODO: use this instead of preConfigure once placeholders land
-    #"-DVULKAN_LAYER_FOLDER=${placeholder out}/share/vulkan/implicit_layer.d/"
+    "-DBUILD_VERSION_STABLE=ON"
+    # TODO: add once pyside2 is in nixpkgs
+    #"-DPYSIDE2_PACKAGE_DIR=${python36Packages.pyside2}"
   ];
 
+  # Future work: define these in the above array via placeholders
   preConfigure = ''
     cmakeFlags+=" -DVULKAN_LAYER_FOLDER=$out/share/vulkan/implicit_layer.d/"
+    cmakeFlags+=" -DRENDERDOC_SWIG_PACKAGE=$PWD/../swig"
   '';
 
   preFixup = ''
-    mkdir $out/bin/.bin
-    mv $out/bin/qrenderdoc $out/bin/.bin/qrenderdoc
-    ln -s $out/bin/.bin/qrenderdoc $out/bin/qrenderdoc
     wrapProgram $out/bin/qrenderdoc --suffix LD_LIBRARY_PATH : $out/lib --suffix LD_LIBRARY_PATH : ${vulkan-loader}/lib
-    mv $out/bin/renderdoccmd $out/bin/.bin/renderdoccmd
-    ln -s $out/bin/.bin/renderdoccmd $out/bin/renderdoccmd
     wrapProgram $out/bin/renderdoccmd --suffix LD_LIBRARY_PATH : $out/lib --suffix LD_LIBRARY_PATH : ${vulkan-loader}/lib
   '';
 
-  # Set path to custom swig binary
-  NIXOS_CUSTOM_SWIG = "${custom_swig}/bin/swig";
-
   enableParallelBuilding = true;
 
-  patches = [ ./custom_swig.patch ];
-
   meta = with stdenv.lib; {
     description = "A single-frame graphics debugger";
     homepage = https://renderdoc.org/;

From b61825e8560a0b732023c4650e9b467aa53f0313 Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Sat, 14 Jul 2018 20:03:40 +0000
Subject: [PATCH 058/139] mucommander: fix crash under XFCE (#43528)

---
 pkgs/applications/misc/mucommander/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/misc/mucommander/default.nix b/pkgs/applications/misc/mucommander/default.nix
index fdb236194f9..d6153d2268b 100644
--- a/pkgs/applications/misc/mucommander/default.nix
+++ b/pkgs/applications/misc/mucommander/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, gradle_3_5, perl, makeWrapper, jre }:
+{ stdenv, fetchFromGitHub, gradle_3_5, perl, makeWrapper, jre, gsettings-desktop-schemas }:
 
 let
   version = "0.9.2";
@@ -10,7 +10,7 @@ let
     rev = version;
     sha256 = "1fvij0yjjz56hsyddznx7mdgq1zm25fkng3axl03iyrij976z7b8";
   };
-  
+
   postPatch = ''
     # there is no .git anyway
     substituteInPlace build.gradle \
@@ -69,7 +69,9 @@ in stdenv.mkDerivation {
   installPhase = ''
     mkdir $out
     tar xvf build/distributions/mucommander-${version}.tar --directory=$out --strip=1
-    wrapProgram $out/bin/mucommander --set JAVA_HOME ${jre}
+    wrapProgram $out/bin/mucommander \
+      --prefix XDG_DATA_DIRS : ${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name} \
+      --set JAVA_HOME ${jre}
   '';
 
   meta = with stdenv.lib; {

From 1727513d4dfa49e6c7ba36bd5c592c7979d3904e Mon Sep 17 00:00:00 2001
From: gnidorah <gnidorah@users.noreply.github.com>
Date: Sat, 14 Jul 2018 23:06:41 +0300
Subject: [PATCH 059/139] electron: add gtk2 dependency (#43379)

---
 pkgs/development/tools/electron/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/electron/default.nix b/pkgs/development/tools/electron/default.nix
index f2b9348103a..38432e58d0d 100644
--- a/pkgs/development/tools/electron/default.nix
+++ b/pkgs/development/tools/electron/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, libXScrnSaver, makeWrapper, fetchurl, unzip, atomEnv }:
+{ stdenv, lib, libXScrnSaver, makeWrapper, fetchurl, unzip, atomEnv, gtk2 }:
 
 let
   version = "1.8.2";
@@ -47,7 +47,7 @@ let
 
       patchelf \
         --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \
-        --set-rpath "${atomEnv.libPath}:$out/lib/electron" \
+        --set-rpath "${atomEnv.libPath}:${gtk2}/lib:$out/lib/electron" \
         $out/lib/electron/electron
 
       wrapProgram $out/lib/electron/electron \

From 07b9fd14dffef18e3140b88d41276d679fde9127 Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Sat, 14 Jul 2018 22:45:07 +0200
Subject: [PATCH 060/139] stb: init at 20180211

---
 pkgs/development/libraries/stb/default.nix | 28 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  2 ++
 2 files changed, 30 insertions(+)
 create mode 100644 pkgs/development/libraries/stb/default.nix

diff --git a/pkgs/development/libraries/stb/default.nix b/pkgs/development/libraries/stb/default.nix
new file mode 100644
index 00000000000..4f36ac2ba1c
--- /dev/null
+++ b/pkgs/development/libraries/stb/default.nix
@@ -0,0 +1,28 @@
+{ stdenv, fetchFromGitHub }:
+
+stdenv.mkDerivation rec {
+  name = "stb-${version}";
+  version = "20180211";
+
+  src = fetchFromGitHub {
+    owner = "nothings";
+    repo = "stb";
+    rev = "e6afb9cbae4064da8c3e69af3ff5c4629579c1d2";
+    sha256 = "079nsn9bnb8c0vfq26g5l53q6gzx19a5x9q2nb55mpcljxsgxnmf";
+  };
+
+  dontBuild = true;
+
+  installPhase = ''
+    mkdir -p $out/include/stb
+    cp *.h $out/include/stb/
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Single-file public domain libraries for C/C++";
+    homepage = https://github.com/nothings/stb;
+    license = licenses.publicDomain;
+    platforms = platforms.all;
+    maintainers = with maintainers; [ jfrankenau ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d4399955ee6..93130ddd25c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11874,6 +11874,8 @@ with pkgs;
     libpcap = if stdenv.isLinux then libpcap else null;
   };
 
+  stb = callPackage ../development/libraries/stb { };
+
   stxxl = callPackage ../development/libraries/stxxl { parallel = true; };
 
   sqlite = lowPrio (callPackage ../development/libraries/sqlite { });

From 08144faaac4d263b451f69be4ec60693ab584aba Mon Sep 17 00:00:00 2001
From: Joachim Fasting <joachifm@fastmail.fm>
Date: Sat, 14 Jul 2018 22:50:10 +0200
Subject: [PATCH 061/139] tor: 0.3.3.8 -> 0.3.3.9

---
 pkgs/tools/security/tor/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/security/tor/default.nix b/pkgs/tools/security/tor/default.nix
index a5ae0c7676b..4923a9019ed 100644
--- a/pkgs/tools/security/tor/default.nix
+++ b/pkgs/tools/security/tor/default.nix
@@ -15,11 +15,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "tor-0.3.3.8";
+  name = "tor-0.3.3.9";
 
   src = fetchurl {
     url = "https://dist.torproject.org/${name}.tar.gz";
-    sha256 = "19dkyspvzabssl695gc1sd9905jyhnrg2yq7l7pvy729lbzb9x9w";
+    sha256 = "0vyf5z0dn5jghp2qjp076aq62lsz9g32qv9jiqf08skf096nnd45";
   };
 
   outputs = [ "out" "geoip" ];

From 3bedaf24f851220159e6206233694b374a9cc4c4 Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Sat, 14 Jul 2018 22:46:14 +0200
Subject: [PATCH 062/139] python.pkgs.libarcus: 3.3.0 -> 3.4.1

---
 pkgs/development/python-modules/libarcus/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/libarcus/default.nix b/pkgs/development/python-modules/libarcus/default.nix
index 4a937ac94f0..2fc66e810d0 100644
--- a/pkgs/development/python-modules/libarcus/default.nix
+++ b/pkgs/development/python-modules/libarcus/default.nix
@@ -3,7 +3,8 @@
 
 buildPythonPackage rec {
   pname = "libarcus";
-  version = "3.3.0";
+  version = "3.4.1";
+  format = "other";
 
   src = fetchFromGitHub {
     owner = "Ultimaker";

From 14abd80d1f41184b28f2bacc30e319892fa71cc7 Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Sat, 14 Jul 2018 22:53:29 +0200
Subject: [PATCH 063/139] python.pkgs.uranium: 3.3.0 -> 3.4.1

---
 pkgs/development/python-modules/uranium/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/uranium/default.nix b/pkgs/development/python-modules/uranium/default.nix
index 7be8f01f23c..276ed481601 100644
--- a/pkgs/development/python-modules/uranium/default.nix
+++ b/pkgs/development/python-modules/uranium/default.nix
@@ -2,7 +2,7 @@
 , pyqt5, numpy, scipy, libarcus, doxygen, gettext, pythonOlder }:
 
 buildPythonPackage rec {
-  version = "3.3.0";
+  version = "3.4.1";
   pname = "uranium";
   format = "other";
 
@@ -10,7 +10,7 @@ buildPythonPackage rec {
     owner = "Ultimaker";
     repo = "Uranium";
     rev = version;
-    sha256 = "1rg0l2blndnbdfcgkjc2r29cnjdm009rz8lnc225ilh9d7w1srbb";
+    sha256 = "1r6d65c9xfkn608k6wv3dprpks5h8g2v9mi4a67ifpzyw4y3f0rk";
   };
 
   disabled = pythonOlder "3.5.0";

From 28f6c3ce6792c3f3423a8b74ff003efa0b7fb1f8 Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Sat, 14 Jul 2018 22:53:57 +0200
Subject: [PATCH 064/139] curaengine: 3.3.0 -> 3.4.1

---
 pkgs/applications/misc/curaengine/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/misc/curaengine/default.nix b/pkgs/applications/misc/curaengine/default.nix
index ac4c68f9b53..ba9a98c616b 100644
--- a/pkgs/applications/misc/curaengine/default.nix
+++ b/pkgs/applications/misc/curaengine/default.nix
@@ -1,18 +1,18 @@
-{ stdenv, fetchFromGitHub, cmake, libarcus }:
+{ stdenv, fetchFromGitHub, cmake, libarcus, stb }:
 
 stdenv.mkDerivation rec {
   name = "curaengine-${version}";
-  version = "3.3.0";
+  version = "3.4.1";
 
   src = fetchFromGitHub {
     owner = "Ultimaker";
     repo = "CuraEngine";
     rev = version;
-    sha256 = "1dj80lk58qb54apdv7n9cmcck4smb00lidgqld21xnndnnqqb4lw";
+    sha256 = "083jmhzmb60rmqw0fhbnlxyblzkmpn3k6zc75xq90x5g3h60wib4";
   };
 
   nativeBuildInputs = [ cmake ];
-  buildInputs = [ libarcus ];
+  buildInputs = [ libarcus stb ];
 
   cmakeFlags = [ "-DCURA_ENGINE_VERSION=${version}" ];
 

From c429142448766bfb005b77c08c6b7b46effa46de Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Sat, 14 Jul 2018 22:54:12 +0200
Subject: [PATCH 065/139] cura: 3.3.1 -> 3.4.1

---
 pkgs/applications/misc/cura/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/misc/cura/default.nix b/pkgs/applications/misc/cura/default.nix
index 3b00bba709a..f97b83a8507 100644
--- a/pkgs/applications/misc/cura/default.nix
+++ b/pkgs/applications/misc/cura/default.nix
@@ -2,20 +2,20 @@
 
 mkDerivation rec {
   name = "cura-${version}";
-  version = "3.3.1";
+  version = "3.4.1";
 
   src = fetchFromGitHub {
     owner = "Ultimaker";
     repo = "Cura";
     rev = version;
-    sha256 = "0a2xxiw1h5cq4nd4pdkq757hap85p2i29msxs57kbfdd78izrjlx";
+    sha256 = "03s9nf1aybbnbf1rzqja41m9g6991bbvrcly1lcrfqksianfn06w";
   };
 
   materials = fetchFromGitHub {
     owner = "Ultimaker";
     repo = "fdm_materials";
-    rev = "3.3.0";
-    sha256 = "0vf7s4m14aqhdg4m2yjj87kjxi2gpa46mgx86p0a91jwvkxa8a1q";
+    rev = "3.4.1";
+    sha256 = "1pw30clxqd7qgnidsyx6grizvlgfn8rhj6rd5ppkvv3rdjh0gj28";
   };
 
   buildInputs = [ qtbase qtquickcontrols2 ];

From 23f5fe768dec00bead44badd077467ac4bbd64d7 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 14 Jul 2018 14:02:59 -0700
Subject: [PATCH 066/139] hdf4: 4.2.13 -> 4.2.14 (#43198)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/hdf/versions.

These checks were done:

- built on NixOS
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdfls passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdfed passed the binary check.
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/gif2hdf had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdf2gif had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdf2jpeg had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdf24to8 had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdf8to24 had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdfcomp had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdfpack had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdftopal had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdftor8 had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdfunpac had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/jpeg2hdf had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/paltohdf had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/r8tohdf had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/ristosds had a zero exit code or showed the expected version
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/vmake passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/vshow passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdp passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdfimport passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hdiff passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hrepack passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/hrepack_check passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/ncgen passed the binary check.
- /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin/bin/ncdump passed the binary check.
- 11 of 25 passed binary check by having a zero exit code.
- 0 of 25 passed binary check by having the new version present in output.
- found 4.2.14 with grep in /nix/store/f243368z016v0mwcx99gs6zc49nxyg55-hdf-4.2.14-bin
- directory tree listing: https://gist.github.com/c7f58f2da962d8b753b08b12178766f7
- du listing: https://gist.github.com/7d3dcd67602a8e6ffc864f5f43080c1d
---
 pkgs/tools/misc/hdf4/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/hdf4/default.nix b/pkgs/tools/misc/hdf4/default.nix
index 1946cbeb3f0..d0bbd10d1e5 100644
--- a/pkgs/tools/misc/hdf4/default.nix
+++ b/pkgs/tools/misc/hdf4/default.nix
@@ -8,10 +8,10 @@
 
 stdenv.mkDerivation rec {
   name = "hdf-${version}";
-  version = "4.2.13";
+  version = "4.2.14";
   src = fetchurl {
     url = "https://support.hdfgroup.org/ftp/HDF/releases/HDF${version}/src/hdf-${version}.tar.bz2";
-    sha256 = "1wz0586zh91pqb95wvr0pbh71a8rz358fdj6n2ksp85x2cis9lsm";
+    sha256 = "0n29klrrbwan9307np0d9hr128dlpc4nnlf57a140080ll3jmp8l";
   };
 
   buildInputs = [

From 5568c7c04b70f388bbcd412abc6f6e39ff1821c1 Mon Sep 17 00:00:00 2001
From: Will Dietz <github@wdtz.org>
Date: Sat, 14 Jul 2018 16:12:22 -0500
Subject: [PATCH 067/139] bloaty: 2018-05-22 -> 2018-06-15 (#43540)

---
 pkgs/development/tools/bloaty/default.nix | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/tools/bloaty/default.nix b/pkgs/development/tools/bloaty/default.nix
index 9b18bcb2561..953a10ca47a 100644
--- a/pkgs/development/tools/bloaty/default.nix
+++ b/pkgs/development/tools/bloaty/default.nix
@@ -1,14 +1,14 @@
 { stdenv, binutils, cmake, zlib, fetchFromGitHub }:
 
 stdenv.mkDerivation rec {
-  version = "2018-05-22";
+  version = "2018-06-15";
   name = "bloaty-${version}";
 
   src = fetchFromGitHub {
     owner = "google";
     repo = "bloaty";
-    rev = "054788b091ccfd43b05b9817062139145096d440";
-    sha256 = "0pmv66137ipzsjjdz004n61pz3aipjhh3b0w0y1406clqpwkvpjm";
+    rev = "bdbb3ce196c86d2154f5fba99b5ff73ca43446a9";
+    sha256 = "1r7di2p8bi12jpgl6cm4ygi1s0chv767mdcavc7pb45874vl02fx";
     fetchSubmodules = true;
   };
 
@@ -20,8 +20,6 @@ stdenv.mkDerivation rec {
 
   doCheck = true;
 
-  checkPhase = "ctest";
-
   installPhase = ''
     install -Dm755 {.,$out/bin}/bloaty
   '';

From 73082002ac42741db2251ede041c101463b10642 Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Sat, 14 Jul 2018 23:31:01 +0200
Subject: [PATCH 068/139] mergerfs-tools: init at 20171221

---
 pkgs/tools/filesystems/mergerfs/tools.nix | 36 +++++++++++++++++++++++
 pkgs/top-level/all-packages.nix           |  2 ++
 2 files changed, 38 insertions(+)
 create mode 100644 pkgs/tools/filesystems/mergerfs/tools.nix

diff --git a/pkgs/tools/filesystems/mergerfs/tools.nix b/pkgs/tools/filesystems/mergerfs/tools.nix
new file mode 100644
index 00000000000..01f0de25a90
--- /dev/null
+++ b/pkgs/tools/filesystems/mergerfs/tools.nix
@@ -0,0 +1,36 @@
+{ stdenv, fetchFromGitHub, coreutils, makeWrapper
+, rsync, python3, pythonPackages }:
+
+stdenv.mkDerivation rec {
+  name = "mergerfs-tools-${version}";
+  version = "20171221";
+
+  src = fetchFromGitHub {
+    owner = "trapexit";
+    repo = "mergerfs-tools";
+    rev = "9b4fe0097b5b51e1a7411a26eb344a24cc8ce1b4";
+    sha256 = "0qrixh3j58gzkmc8r2sgzgy56gm8bmhakwlc2gjb0yrpa1213na1";
+  };
+
+  nativeBuildInputs = [ makeWrapper ];
+  buildInputs = [ python3 ];
+
+  makeFlags = [
+    "INSTALL=${coreutils}/bin/install"
+    "PREFIX=$(out)"
+  ];
+
+  postInstall = with stdenv.lib; ''
+    wrapProgram $out/bin/mergerfs.balance --prefix PATH : ${makeBinPath [ rsync ]}
+    wrapProgram $out/bin/mergerfs.dup --prefix PATH : ${makeBinPath [ rsync ]}
+    wrapProgram $out/bin/mergerfs.mktrash --prefix PATH : ${makeBinPath [ pythonPackages.xattr ]}
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Optional tools to help manage data in a mergerfs pool";
+    homepage = https://github.com/trapexit/mergerfs-tools;
+    license = licenses.isc;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ jfrankenau ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 01de9af5347..bdb3b9b6702 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -10915,6 +10915,8 @@ with pkgs;
 
   mergerfs = callPackage ../tools/filesystems/mergerfs { };
 
+  mergerfs-tools = callPackage ../tools/filesystems/mergerfs/tools.nix { };
+
   ## libGL/libGLU/Mesa stuff
 
   # Default libGL implementation, should provide headers and libGL.so/libEGL.so/... to link agains them

From d81f819db35fe833d935486439d085bd5c3e85da Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Thu, 15 Mar 2018 12:55:03 +0100
Subject: [PATCH 069/139] nixos/cupsd: add option to start when needed

---
 nixos/modules/services/printing/cupsd.nix | 17 ++++++++++++++++-
 1 file changed, 16 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/printing/cupsd.nix b/nixos/modules/services/printing/cupsd.nix
index b074d15cbec..dbf18ec1d11 100644
--- a/nixos/modules/services/printing/cupsd.nix
+++ b/nixos/modules/services/printing/cupsd.nix
@@ -124,6 +124,16 @@ in
         '';
       };
 
+      startWhenNeeded = mkOption {
+        type = types.bool;
+        default = false;
+        description = ''
+          If set, CUPS is socket-activated; that is,
+          instead of having it permanently running as a daemon,
+          systemd will start it on the first incoming connection.
+        '';
+      };
+
       listenAddresses = mkOption {
         type = types.listOf types.str;
         default = [ "localhost:631" ];
@@ -287,8 +297,13 @@ in
 
     systemd.packages = [ cups.out ];
 
+    systemd.sockets.cups = mkIf cfg.startWhenNeeded {
+      wantedBy = [ "sockets.target" ];
+      listenStreams = map (x: replaceStrings ["localhost"] ["127.0.0.1"] (removePrefix "*:" x)) cfg.listenAddresses;
+    };
+
     systemd.services.cups =
-      { wantedBy = [ "multi-user.target" ];
+      { wantedBy = optionals (!cfg.startWhenNeeded) [ "multi-user.target" ];
         wants = [ "network.target" ];
         after = [ "network.target" ];
 

From d6874a7e1edfe3cf256a01f692050b05ec77e2b2 Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Sat, 14 Jul 2018 23:50:24 +0200
Subject: [PATCH 070/139] gurobi: init at 8.0.1

---
 .../science/math/gurobi/default.nix           | 48 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 50 insertions(+)
 create mode 100644 pkgs/applications/science/math/gurobi/default.nix

diff --git a/pkgs/applications/science/math/gurobi/default.nix b/pkgs/applications/science/math/gurobi/default.nix
new file mode 100644
index 00000000000..06d448f6252
--- /dev/null
+++ b/pkgs/applications/science/math/gurobi/default.nix
@@ -0,0 +1,48 @@
+{ stdenv, fetchurl, autoPatchelfHook, python }:
+
+stdenv.mkDerivation rec {
+  name = "gurobi-${version}";
+  version = "8.0.1";
+
+  src = with stdenv.lib; fetchurl {
+    url = "http://packages.gurobi.com/${versions.majorMinor version}/gurobi${version}_linux64.tar.gz";
+    sha256 = "0y3lb0mngnyn7ql4s2n8qxnr1d2xcjdpdhpdjdxc4sc8f2w2ih18";
+  };
+
+  sourceRoot = "gurobi${builtins.replaceStrings ["."] [""] version}/linux64";
+
+  nativeBuildInputs = [ autoPatchelfHook ];
+  buildInputs = [ (python.withPackages (ps: [ ps.gurobipy ])) ];
+
+  buildPhase = ''
+    cd src/build
+    make
+    cd ../..
+  '';
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp bin/* $out/bin/
+    rm $out/bin/gurobi.env
+    rm $out/bin/gurobi.sh
+    rm $out/bin/python2.7
+
+    cp lib/gurobi.py $out/bin/gurobi.sh
+
+    mkdir -p $out/include
+    cp include/gurobi*.h $out/include/
+
+    mkdir -p $out/lib
+    cp lib/libgurobi*.so* $out/lib/
+    cp lib/libgurobi*.a $out/lib/
+    cp src/build/*.a $out/lib/
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Optimization solver for mathematical programming";
+    homepage = https://www.gurobi.com;
+    license = licenses.unfree;
+    platforms = [ "x86_64-linux" ];
+    maintainers = with maintainers; [ jfrankenau ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 7c5ecb49bc3..dd3d19b1ae6 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -20187,6 +20187,8 @@ with pkgs;
 
   flintqs = callPackage ../development/libraries/science/math/flintqs { };
 
+  gurobi = callPackage ../applications/science/math/gurobi { };
+
   jags = callPackage ../applications/science/math/jags { };
 
 

From 5a9ba174bde89a1c6ce25aebab6bce42f1bafc93 Mon Sep 17 00:00:00 2001
From: Matthieu Coudron <mattator@gmail.com>
Date: Sun, 15 Jul 2018 09:36:08 +0900
Subject: [PATCH 071/139] lib.debug: fix traceValSeqFn

was calling the wrong parent version.
---
 lib/debug.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/debug.nix b/lib/debug.nix
index 91a9265a6b5..383eb32d75d 100644
--- a/lib/debug.nix
+++ b/lib/debug.nix
@@ -77,7 +77,7 @@ rec {
                (modify depth snip x)) y;
 
   /* A combination of `traceVal` and `traceSeq` */
-  traceValSeqFn = f: v: traceVal f (builtins.deepSeq v v);
+  traceValSeqFn = f: v: traceValFn f (builtins.deepSeq v v);
   traceValSeq = traceValSeqFn id;
 
   /* A combination of `traceVal` and `traceSeqN`. */

From 4a637dc0048a629a16ea355e4c6b0aff43c7f4ec Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 14 Jul 2018 19:48:36 +0200
Subject: [PATCH 072/139] =?UTF-8?q?pulseeffects:=204.1.5=20=E2=86=92=204.1?=
 =?UTF-8?q?.6?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/applications/audio/pulseeffects/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/pulseeffects/default.nix b/pkgs/applications/audio/pulseeffects/default.nix
index 9e8b924d43d..6a24a11ddda 100644
--- a/pkgs/applications/audio/pulseeffects/default.nix
+++ b/pkgs/applications/audio/pulseeffects/default.nix
@@ -23,6 +23,7 @@
 , boost
 , fftwFloat
 , calf
+, zita-convolver
 , zam-plugins
 , rubberband
 , mda_lv2
@@ -39,13 +40,13 @@ let
   ];
 in stdenv.mkDerivation rec {
   name = "pulseeffects-${version}";
-  version = "4.1.5";
+  version = "4.1.6";
 
   src = fetchFromGitHub {
     owner = "wwmm";
     repo = "pulseeffects";
     rev = "v${version}";
-    sha256 = "1k5ibn4ilzhps91insvw07jd9x9yxhxl8pvfzgcm9ndvb8anifv4";
+    sha256 = "0fxd1rgf3l667gibd6brfrs8vkq6882w7jql871j5q5ynz1c9j46";
   };
 
   nativeBuildInputs = [
@@ -73,6 +74,7 @@ in stdenv.mkDerivation rec {
     libsndfile
     boost
     fftwFloat
+    zita-convolver
   ];
 
   postPatch = ''

From 7ef73ab110325d95328a7c05c0f3f72d59332944 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 15 Jul 2018 02:44:30 +0200
Subject: [PATCH 073/139] zita-convolver: fix so link

---
 .../libraries/audio/zita-convolver/default.nix           | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/audio/zita-convolver/default.nix b/pkgs/development/libraries/audio/zita-convolver/default.nix
index 48a409b5367..11a06d4f39a 100644
--- a/pkgs/development/libraries/audio/zita-convolver/default.nix
+++ b/pkgs/development/libraries/audio/zita-convolver/default.nix
@@ -15,11 +15,14 @@ stdenv.mkDerivation rec {
     sed -e "s@ldconfig@@" -i Makefile
   '';
 
-  installPhase = ''
-    make PREFIX="$out" SUFFIX="" install
+  makeFlags = [
+    "PREFIX=$(out)"
+    "SUFFIX="
+  ];
 
+  postInstall = ''
     # create lib link for building apps
-    ln -s $out/lib/libzita-convolver.so.$version $out/lib/libzita-convolver.so.3
+    ln -s $out/lib/libzita-convolver.so.${version} $out/lib/libzita-convolver.so.${stdenv.lib.versions.major version}
   '';
 
   meta = {

From 6308fa8de1a620b19fe2a9ddc76983d3aae4c097 Mon Sep 17 00:00:00 2001
From: Michael Hoang <enzime@users.noreply.github.com>
Date: Sun, 15 Jul 2018 11:09:12 +1000
Subject: [PATCH 074/139] youtube-dl: 2018.05.18 -> 2018.07.10

Also remove `with stdenv.lib` from Nix derivation to make it clearer
where variables are coming from.
---
 pkgs/tools/misc/youtube-dl/default.nix | 23 +++++++++++------------
 1 file changed, 11 insertions(+), 12 deletions(-)

diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix
index 7e503f326fd..90489e126fa 100644
--- a/pkgs/tools/misc/youtube-dl/default.nix
+++ b/pkgs/tools/misc/youtube-dl/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, targetPlatform, fetchurl, buildPythonPackage
+{ stdenv, lib, targetPlatform, fetchurl, buildPythonPackage
 , zip, ffmpeg, rtmpdump, phantomjs2, atomicparsley, pycryptodome, pandoc
 # Pandoc is required to build the package's man page. Release tarballs contain a
 # formatted man page already, though, it will still be installed. We keep the
@@ -12,20 +12,19 @@
 , hlsEncryptedSupport ? true
 , makeWrapper }:
 
-with stdenv.lib;
 buildPythonPackage rec {
 
   pname = "youtube-dl";
-  version = "2018.05.18";
+  version = "2018.07.10";
 
   src = fetchurl {
     url = "https://yt-dl.org/downloads/${version}/${pname}-${version}.tar.gz";
-    sha256 = "11r0hv6885w8k4m307kvf9545vr5a3ym9bf7szghvbcgmgc8lm5w";
+    sha256 = "1rigah941k2drzx5qz937lk68gw9jrizj5lgd9f9znp0bgi2d0xd";
   };
 
   nativeBuildInputs = [ makeWrapper ];
-  buildInputs = [ zip ] ++ optional generateManPage pandoc;
-  propagatedBuildInputs = optional hlsEncryptedSupport pycryptodome;
+  buildInputs = [ zip ] ++ lib.optional generateManPage pandoc;
+  propagatedBuildInputs = lib.optional hlsEncryptedSupport pycryptodome;
 
   # Ensure ffmpeg is available in $PATH for post-processing & transcoding support.
   # rtmpdump is required to download files over RTMP
@@ -33,10 +32,10 @@ buildPythonPackage rec {
   makeWrapperArgs = let
       packagesToBinPath =
         [ atomicparsley ]
-        ++ optional ffmpegSupport ffmpeg
-        ++ optional rtmpSupport rtmpdump
-        ++ optional phantomjsSupport phantomjs2;
-    in [ ''--prefix PATH : "${makeBinPath packagesToBinPath}"'' ];
+        ++ lib.optional ffmpegSupport ffmpeg
+        ++ lib.optional rtmpSupport rtmpdump
+        ++ lib.optional phantomjsSupport phantomjs2;
+    in [ ''--prefix PATH : "${lib.makeBinPath packagesToBinPath}"'' ];
 
   postInstall = ''
     mkdir -p $out/share/zsh/site-functions
@@ -46,7 +45,7 @@ buildPythonPackage rec {
   # Requires network
   doCheck = false;
 
-  meta = {
+  meta = with lib; {
     homepage = https://rg3.github.io/youtube-dl/;
     repositories.git = https://github.com/rg3/youtube-dl.git;
     description = "Command-line tool to download videos from YouTube.com and other sites";
@@ -58,6 +57,6 @@ buildPythonPackage rec {
     '';
     license = licenses.publicDomain;
     platforms = with platforms; linux ++ darwin;
-    maintainers = with maintainers; [ bluescreen303 phreedom AndersonTorres fuuzetsu fpletz ];
+    maintainers = with maintainers; [ bluescreen303 phreedom AndersonTorres fuuzetsu fpletz enzime ];
   };
 }

From 8cf34caba53e00a9d1b4d9868913fea2eca3efa1 Mon Sep 17 00:00:00 2001
From: Michael Hoang <enzime@users.noreply.github.com>
Date: Sun, 15 Jul 2018 13:11:49 +1000
Subject: [PATCH 075/139] streamlink: set macOS as a supported platform

---
 pkgs/applications/video/streamlink/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/video/streamlink/default.nix b/pkgs/applications/video/streamlink/default.nix
index 491e6fcd164..dbf22aa9f8e 100644
--- a/pkgs/applications/video/streamlink/default.nix
+++ b/pkgs/applications/video/streamlink/default.nix
@@ -26,7 +26,7 @@ pythonPackages.buildPythonApplication rec {
       Streamlink is a fork of the livestreamer project.
     '';
     license = licenses.bsd2;
-    platforms = platforms.linux;
-    maintainers = with maintainers; [ dezgeg zraexy ];
+    platforms = platforms.linux ++ platforms.darwin;
+    maintainers = with maintainers; [ dezgeg zraexy enzime ];
   };
 }

From 1cb41052af98f3e3bc61c199d6ca9554536c76bf Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sat, 14 Jul 2018 22:53:38 -0500
Subject: [PATCH 076/139] radiotray-ng: 0.2.2 -> 0.2.3

---
 pkgs/applications/audio/radiotray-ng/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/radiotray-ng/default.nix b/pkgs/applications/audio/radiotray-ng/default.nix
index 2ce82eb6a0a..9efd7bb386f 100644
--- a/pkgs/applications/audio/radiotray-ng/default.nix
+++ b/pkgs/applications/audio/radiotray-ng/default.nix
@@ -40,13 +40,13 @@ let
 in
 stdenv.mkDerivation rec {
   name = "radiotray-ng-${version}";
-  version = "0.2.2";
+  version = "0.2.3";
 
   src = fetchFromGitHub {
     owner = "ebruck";
     repo = "radiotray-ng";
     rev = "v${version}";
-    sha256 = "0q8k7nsjm6m0r0zs1br60niaqlwvd3myqalb5sqijzanx41aq2l6";
+    sha256 = "1sq7bc0dswv3vv56w527z268ib0pyhdxyf25388vnj1fv0c146wc";
   };
 
   nativeBuildInputs = [ cmake pkgconfig wrapGAppsHook makeWrapper ];

From ec523bef211d8e8f363bec1016287c58d28f1660 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sat, 14 Jul 2018 23:04:43 -0500
Subject: [PATCH 077/139] radare2-cutter: 1.5 -> 1.6

https://github.com/radareorg/cutter/releases/tag/v1.6
---
 pkgs/development/tools/analysis/radare2-cutter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/analysis/radare2-cutter/default.nix b/pkgs/development/tools/analysis/radare2-cutter/default.nix
index e35b0005041..8be84f28d36 100644
--- a/pkgs/development/tools/analysis/radare2-cutter/default.nix
+++ b/pkgs/development/tools/analysis/radare2-cutter/default.nix
@@ -10,13 +10,13 @@
 
 stdenv.mkDerivation rec {
   name = "radare2-cutter-${version}";
-  version = "1.5";
+  version = "1.6";
 
   src = fetchFromGitHub {
     owner = "radareorg";
     repo = "cutter";
     rev = "v${version}";
-    sha256 = "0xwls8jhhigdkwyq3nf9xwcz4inm5smwinkyliwmfzvfflbbci5c";
+    sha256 = "1ps52yf94yfnws3nn1iiwch2jy33dyvi7j47xkmh0m5fpdqi5xk7";
   };
 
   postUnpack = "export sourceRoot=$sourceRoot/src";

From ad1912700993e759630c2289c5cf863c44448876 Mon Sep 17 00:00:00 2001
From: Andrew Childs <lorne@cons.org.nz>
Date: Sun, 15 Jul 2018 13:15:24 +0900
Subject: [PATCH 078/139] ffmpeg: fix inverted cross compilation flags

---
 pkgs/development/libraries/ffmpeg/generic.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/ffmpeg/generic.nix b/pkgs/development/libraries/ffmpeg/generic.nix
index 270e9605582..762f306d69f 100644
--- a/pkgs/development/libraries/ffmpeg/generic.nix
+++ b/pkgs/development/libraries/ffmpeg/generic.nix
@@ -148,7 +148,7 @@ stdenv.mkDerivation rec {
       "--disable-stripping"
     # Disable mmx support for 0.6.90
       (verFix null "0.6.90" "--disable-mmx")
-  ] ++ optionals (stdenv.hostPlatform == stdenv.buildPlatform) [
+  ] ++ optionals (stdenv.hostPlatform != stdenv.buildPlatform) [
       "--cross-prefix=${stdenv.cc.targetPrefix}"
       "--enable-cross-compile"
   ] ++ optional stdenv.cc.isClang "--cc=clang";

From 692068ecfc64b742313022d63834d1b6f5a068fb Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sat, 14 Jul 2018 23:25:21 -0500
Subject: [PATCH 079/139] radare2-cutter: use r2 built from rev Cutter pins as
 submodule

---
 .../tools/analysis/radare2-cutter/default.nix    | 16 +++++++++++++---
 1 file changed, 13 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/tools/analysis/radare2-cutter/default.nix b/pkgs/development/tools/analysis/radare2-cutter/default.nix
index 8be84f28d36..ff2b4d3b54f 100644
--- a/pkgs/development/tools/analysis/radare2-cutter/default.nix
+++ b/pkgs/development/tools/analysis/radare2-cutter/default.nix
@@ -7,10 +7,20 @@
 , radare2
 , python3 }:
 
-
+let
+  r2 = radare2.overrideDerivation (o: {
+    name = "radare2-for-cutter-${version}";
+    src = fetchFromGitHub {
+      owner = "radare";
+      repo = "radare2";
+      rev = "a98557bfbfa96e9f677a8c779ee78085ee5a23bb";
+      sha256 = "04jl1lq3dqljb6vagzlym4wc867ayhx1v52f75rkfz0iybsh249r";
+    };
+  });
+  version = "1.6";
+in
 stdenv.mkDerivation rec {
   name = "radare2-cutter-${version}";
-  version = "1.6";
 
   src = fetchFromGitHub {
     owner = "radareorg";
@@ -31,7 +41,7 @@ stdenv.mkDerivation rec {
   '';
 
   nativeBuildInputs = [ qmake pkgconfig ];
-  buildInputs = [ qtbase qtsvg qtwebengine radare2 python3 ];
+  buildInputs = [ qtbase qtsvg qtwebengine r2 python3 ];
 
   qmakeFlags = [
     "CONFIG+=link_pkgconfig"

From 4ba6e227a278a952b7d2056a762e643ef31735cf Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sat, 14 Jul 2018 23:54:21 -0500
Subject: [PATCH 080/139] creduce: 2.7.0 -> 2.8.0

---
 pkgs/development/tools/misc/creduce/default.nix | 6 +++---
 pkgs/top-level/all-packages.nix                 | 2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/tools/misc/creduce/default.nix b/pkgs/development/tools/misc/creduce/default.nix
index a3c5fd7f009..5c6b8cfd960 100644
--- a/pkgs/development/tools/misc/creduce/default.nix
+++ b/pkgs/development/tools/misc/creduce/default.nix
@@ -8,18 +8,18 @@
 
 stdenv.mkDerivation rec {
   name = "creduce-${version}";
-  version = "2.7.0";
+  version = "2.8.0";
 
   src = fetchurl {
     url = "https://embed.cs.utah.edu/creduce/${name}.tar.gz";
-    sha256 = "0h8s4d54q6cl6i45x3143l2xmr29b2yhr3m0n5qqx63sr5csip1n";
+    sha256 = "1vqx73ymfscvlyig03972a5m7ar3gx2yv6m8c6h2mibz792j5xkp";
   };
 
+  nativeBuildInputs = [ cmake makeWrapper ];
   buildInputs = [
     # Ensure stdenv's CC is on PATH before clang-unwrapped
     stdenv.cc
     # Actual deps:
-    cmake makeWrapper
     llvm clang-unwrapped
     flex zlib
     perl ExporterLite FileWhich GetoptTabular RegexpCommon TermReadKey
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 01de9af5347..097a4c64eb3 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7985,7 +7985,7 @@ with pkgs;
   creduce = callPackage ../development/tools/misc/creduce {
     inherit (perlPackages) perl
       ExporterLite FileWhich GetoptTabular RegexpCommon TermReadKey;
-    inherit (llvmPackages_4) llvm clang-unwrapped;
+    inherit (llvmPackages_6) llvm clang-unwrapped;
   };
 
   cscope = callPackage ../development/tools/misc/cscope { };

From 342f72e747369c19f041e4169d93b3283dbe15a9 Mon Sep 17 00:00:00 2001
From: Andrew Childs <lorne@cons.org.nz>
Date: Sun, 15 Jul 2018 14:41:45 +0900
Subject: [PATCH 081/139] ffmpeg: fix includedir in pkg-config files

---
 pkgs/development/libraries/ffmpeg/generic.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/development/libraries/ffmpeg/generic.nix b/pkgs/development/libraries/ffmpeg/generic.nix
index 762f306d69f..bc70c5ab237 100644
--- a/pkgs/development/libraries/ffmpeg/generic.nix
+++ b/pkgs/development/libraries/ffmpeg/generic.nix
@@ -170,9 +170,15 @@ stdenv.mkDerivation rec {
 
   doCheck = false; # fails
 
+  # ffmpeg 3+ generates pkg-config (.pc) files that don't have the
+  # form automatically handled by the multiple-outputs hooks.
   postFixup = ''
     moveToOutput bin "$bin"
     moveToOutput share/ffmpeg/examples "$doc"
+    for pc in ''${!outputDev}/lib/pkgconfig/*.pc; do
+      substituteInPlace $pc \
+        --replace "includedir=$out" "includedir=''${!outputInclude}"
+    done
   '';
 
   installFlags = [ "install-man" ];

From 10cbebe3dfc2ef92cc363eb51abd6ecb8a05edab Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Sun, 15 Jul 2018 10:57:32 +0200
Subject: [PATCH 082/139] ffmpeg: 3.4.2 -> 3.4.3 (security)

https://git.ffmpeg.org/gitweb/ffmpeg.git/blob/89355585366:/Changelog
/cc #42882: it certainly seems to fix some security issues,
but I'm not sure about mapping to particular CVE numbers;
perhaps it will appear on http://ffmpeg.org/security.html
---
 pkgs/development/libraries/ffmpeg/3.4.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/ffmpeg/3.4.nix b/pkgs/development/libraries/ffmpeg/3.4.nix
index 98cbfdf43f6..05da9e18c59 100644
--- a/pkgs/development/libraries/ffmpeg/3.4.nix
+++ b/pkgs/development/libraries/ffmpeg/3.4.nix
@@ -6,7 +6,7 @@
 
 callPackage ./generic.nix (args // rec {
   version = "${branch}";
-  branch = "3.4.2";
-  sha256 = "0nkq4451masmzlx3p4vprqwc0sl2iwqxbzjrngmvj29q4azp00zb";
+  branch = "3.4.3";
+  sha256 = "0s2p2bcrywlya4wjlyzi1382vngkiijjvjr6ms64xww5jplwmhmk";
   darwinFrameworks = [ Cocoa CoreMedia ];
 })

From 03e13ab3706d49f2f94d826abee9c5badc66a68e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Sun, 15 Jul 2018 11:03:42 +0200
Subject: [PATCH 083/139] ffmpeg_4, ffmpeg-full: 4.0 -> 4.0.1 (security)

https://git.ffmpeg.org/gitweb/ffmpeg.git/blob/e049f7c24f:/Changelog
http://ffmpeg.org/security.html claims it fixes CVE-2018-12458..12460
---
 pkgs/development/libraries/ffmpeg-full/default.nix | 4 ++--
 pkgs/development/libraries/ffmpeg/4.nix            | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/libraries/ffmpeg-full/default.nix b/pkgs/development/libraries/ffmpeg-full/default.nix
index fcbaaaba6ba..c5ce5e252fa 100644
--- a/pkgs/development/libraries/ffmpeg-full/default.nix
+++ b/pkgs/development/libraries/ffmpeg-full/default.nix
@@ -232,11 +232,11 @@ assert nvenc -> nvidia-video-sdk != null && nonfreeLicensing;
 
 stdenv.mkDerivation rec {
   name = "ffmpeg-full-${version}";
-  version = "4.0";
+  version = "4.0.1";
 
   src = fetchurl {
     url = "https://www.ffmpeg.org/releases/ffmpeg-${version}.tar.xz";
-    sha256 = "0gx4ngnhi5glmxh38603qy5n6vq8bl1cr4sqd1xff95i82pmv57d";
+    sha256 = "1vn04n0n46zdxq14cma3w8ml2ckh5jxwlybsc4xmvcqdqq0mqpv0";
   };
 
   prePatch = ''
diff --git a/pkgs/development/libraries/ffmpeg/4.nix b/pkgs/development/libraries/ffmpeg/4.nix
index a6e67052cd0..40b697c7a76 100644
--- a/pkgs/development/libraries/ffmpeg/4.nix
+++ b/pkgs/development/libraries/ffmpeg/4.nix
@@ -6,7 +6,7 @@
 
 callPackage ./generic.nix (args // rec {
   version = "${branch}";
-  branch = "4.0";
-  sha256 = "1f3k8nz5ag6szsfhlrz66qm8s1yxk1vphqvcfr4ps4690vckk2ii";
+  branch = "4.0.1";
+  sha256 = "0w0nq98sn5jwx982wzg3vfrxv4p0k1fvsksiz9az0rpvwyqr3rby";
   darwinFrameworks = [ Cocoa CoreMedia ];
 })

From 64a64e7483581b2ea64b48a74671681176d14631 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Sun, 15 Jul 2018 12:20:47 +0200
Subject: [PATCH 084/139] pythonPackages.cvxopt: temporarily disable tests
 (#43564)

The tests have transient failures that will be fixed once staging is
merged.
---
 pkgs/development/python-modules/cvxopt/default.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/development/python-modules/cvxopt/default.nix b/pkgs/development/python-modules/cvxopt/default.nix
index e17bd38da02..906e2c0bbe4 100644
--- a/pkgs/development/python-modules/cvxopt/default.nix
+++ b/pkgs/development/python-modules/cvxopt/default.nix
@@ -46,6 +46,11 @@ buildPythonPackage rec {
     export CVXOPT_FFTW_INC_DIR=${fftw.dev}/include
   '';
 
+  # https://github.com/cvxopt/cvxopt/issues/122
+  # This is fixed on staging (by #43234, status 2018-07-15), but until that
+  # lands we should disable the tests. Otherwise the 99% of use cases that
+  # should be unaffected by that failure are affected.
+  doCheck = false;
   checkPhase = ''
     ${python.interpreter} -m unittest discover -s tests
   '';

From e40a09e3ace41320ae49ea8109121385e7fb2659 Mon Sep 17 00:00:00 2001
From: Uli Baum <xeji@cat3.de>
Date: Sun, 15 Jul 2018 13:48:43 +0200
Subject: [PATCH 085/139] percona-xtrabackup: fix build with gcc7

---
 pkgs/tools/backup/percona-xtrabackup/default.nix | 1 +
 pkgs/top-level/all-packages.nix                  | 1 -
 2 files changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/tools/backup/percona-xtrabackup/default.nix b/pkgs/tools/backup/percona-xtrabackup/default.nix
index a1c53dcd97f..712d0af29a9 100644
--- a/pkgs/tools/backup/percona-xtrabackup/default.nix
+++ b/pkgs/tools/backup/percona-xtrabackup/default.nix
@@ -28,6 +28,7 @@ stdenv.mkDerivation rec {
     "-DWITH_SSL=system"
     "-DWITH_ZLIB=system"
     "-DWITH_MAN_PAGES=OFF"
+    "-DCMAKE_CXX_FLAGS=-std=gnu++03"
   ];
 
   postInstall = ''
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 74cdc46ff57..a52db70835f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4364,7 +4364,6 @@ with pkgs;
   pepper = callPackage ../tools/admin/salt/pepper { };
 
   percona-xtrabackup = callPackage ../tools/backup/percona-xtrabackup {
-    stdenv = overrideCC stdenv gcc5;
     boost = boost159;
   };
 

From c77d1e5b318213ec432cda40f3c4c9bbae429281 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Sun, 15 Jul 2018 11:20:19 +0200
Subject: [PATCH 086/139] eclib: 20171219 -> 20180710

Also includes the necessary sage compatibility patch, borrowed from
ArchLinux.
---
 .../math/sage/patches/eclib-20180710.patch    | 40 +++++++++++++++++++
 .../science/math/sage/sage-src.nix            |  3 ++
 pkgs/development/libraries/eclib/default.nix  | 25 +++++++++---
 .../python-modules/cvxopt/default.nix         |  5 +++
 4 files changed, 67 insertions(+), 6 deletions(-)
 create mode 100644 pkgs/applications/science/math/sage/patches/eclib-20180710.patch

diff --git a/pkgs/applications/science/math/sage/patches/eclib-20180710.patch b/pkgs/applications/science/math/sage/patches/eclib-20180710.patch
new file mode 100644
index 00000000000..d06e1e6cedf
--- /dev/null
+++ b/pkgs/applications/science/math/sage/patches/eclib-20180710.patch
@@ -0,0 +1,40 @@
+diff --git a/src/sage/interfaces/mwrank.py b/src/sage/interfaces/mwrank.py
+index 4417b59276..ae57ca2991 100644
+--- a/src/sage/interfaces/mwrank.py
++++ b/src/sage/interfaces/mwrank.py
+@@ -54,8 +54,9 @@ def Mwrank(options="", server=None, server_tmpdir=None):
+         sage: M = Mwrank('-v 0 -l')
+         sage: print(M('0 0 1 -1 0'))
+         Curve [0,0,1,-1,0] :    Rank = 1
+-        Generator 1 is [0:-1:1]; height 0.0511114082399688
+-        Regulator = 0.0511114082399688
++        Generator 1 is [0:-1:1]; height 0.051111408239969
++        Regulator = 0.051111408239969
++
+     """
+     global instances
+     try:
+diff --git a/src/sage/libs/eclib/wrap.cpp b/src/sage/libs/eclib/wrap.cpp
+index 5fd5693b53..d12468faa8 100644
+--- a/src/sage/libs/eclib/wrap.cpp
++++ b/src/sage/libs/eclib/wrap.cpp
+@@ -133,8 +133,8 @@ char* Curvedata_isogeny_class(struct Curvedata* E, int verbose)
+ 
+ 
+ int mw_process(struct Curvedata* curve, struct mw* m,
+-                      const struct bigint* x, const struct bigint* y,
+-                      const struct bigint* z, int sat)
++                      const bigint* x, const bigint* y,
++                      const bigint* z, int sat)
+ {
+   Point P(*curve, *x, *y, *z);
+   if (!P.isvalid())
+@@ -188,7 +188,7 @@ int mw_rank(struct mw* m)
+ }
+ 
+ /* Returns index and unsat long array, which user must deallocate */
+-int mw_saturate(struct mw* m, struct bigint* index, char** unsat,
++int mw_saturate(struct mw* m, bigint* index, char** unsat,
+                        long sat_bd, int odd_primes_only)
+ {
+   vector<long> v;
diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix
index 348adf5d509..d342fba2116 100644
--- a/pkgs/applications/science/math/sage/sage-src.nix
+++ b/pkgs/applications/science/math/sage/sage-src.nix
@@ -176,6 +176,9 @@ stdenv.mkDerivation rec {
 
     # https://trac.sagemath.org/ticket/24838 rebased
     ./patches/pynac-0.7.22.patch
+
+    # https://trac.sagemath.org/ticket/25862
+    ./patches/eclib-20180710.patch
   ];
 
   patches = nixPatches ++ packageUpgradePatches;
diff --git a/pkgs/development/libraries/eclib/default.nix b/pkgs/development/libraries/eclib/default.nix
index b2a224e10b1..e4d1fa2073f 100644
--- a/pkgs/development/libraries/eclib/default.nix
+++ b/pkgs/development/libraries/eclib/default.nix
@@ -1,5 +1,6 @@
 { stdenv
 , fetchFromGitHub
+, fetchpatch
 , autoreconfHook
 , libtool
 , gettext
@@ -17,13 +18,25 @@ assert withFlint -> flint != null;
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "eclib";
-  version = "20171219";
+  version = "20180710"; # upgrade might break the sage interface
+  # sage tests to run:
+  # src/sage/interfaces/mwrank.py
+  # src/sage/libs/eclib
+  # ping @timokau for more info
   src = fetchFromGitHub {
     owner = "JohnCremona";
     repo = "${pname}";
     rev = "v${version}";
-    sha256 = "1yw488ng0labpxqqpxq0710qnndxl8plvcaqklpbwwd62a47knlr";
+    sha256 = "1kmwpw971sipb4499c9b35q5pz6sms5qndqrvq7396d8hhwjg1i2";
   };
+  patches = [
+    # One of the headers doesn't get installed.
+    # See https://github.com/NixOS/nixpkgs/pull/43476.
+    (fetchpatch {
+      url = "https://github.com/JohnCremona/eclib/pull/42/commits/c9b96429815e31a6e3372c106e31eef2a96431f9.patch";
+      sha256 = "0cw26h94m66rbh8jjsfnb1bvc6z7ybh8zcp8xl5nhxjxiawhcl73";
+    })
+  ];
   buildInputs = [
     pari
     ntl
@@ -35,12 +48,12 @@ stdenv.mkDerivation rec {
     autoreconfHook
   ];
   doCheck = true;
-  meta = {
+  meta = with stdenv.lib; {
     inherit version;
     description = ''Elliptic curve tools'';
     homepage = https://github.com/JohnCremona/eclib;
-    license = stdenv.lib.licenses.gpl2Plus;
-    maintainers = [stdenv.lib.maintainers.raskin];
-    platforms = stdenv.lib.platforms.linux;
+    license = licenses.gpl2Plus;
+    maintainers = with maintainers; [ raskin timokau ];
+    platforms = platforms.all;
   };
 }
diff --git a/pkgs/development/python-modules/cvxopt/default.nix b/pkgs/development/python-modules/cvxopt/default.nix
index e17bd38da02..906e2c0bbe4 100644
--- a/pkgs/development/python-modules/cvxopt/default.nix
+++ b/pkgs/development/python-modules/cvxopt/default.nix
@@ -46,6 +46,11 @@ buildPythonPackage rec {
     export CVXOPT_FFTW_INC_DIR=${fftw.dev}/include
   '';
 
+  # https://github.com/cvxopt/cvxopt/issues/122
+  # This is fixed on staging (by #43234, status 2018-07-15), but until that
+  # lands we should disable the tests. Otherwise the 99% of use cases that
+  # should be unaffected by that failure are affected.
+  doCheck = false;
   checkPhase = ''
     ${python.interpreter} -m unittest discover -s tests
   '';

From de0c67572f25a898e227084562f71d01cbd67b4f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Sun, 15 Jul 2018 15:29:23 +0200
Subject: [PATCH 087/139] python.pkgs.vega_datasets: init at 0.5.0

---
 .../python-modules/vega_datasets/default.nix  | 25 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 27 insertions(+)
 create mode 100644 pkgs/development/python-modules/vega_datasets/default.nix

diff --git a/pkgs/development/python-modules/vega_datasets/default.nix b/pkgs/development/python-modules/vega_datasets/default.nix
new file mode 100644
index 00000000000..a7b6c6865cc
--- /dev/null
+++ b/pkgs/development/python-modules/vega_datasets/default.nix
@@ -0,0 +1,25 @@
+{ lib, buildPythonPackage, fetchPypi, pandas, pytest }:
+
+buildPythonPackage rec {
+  pname = "vega_datasets";
+  version = "0.5.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1fa672ba89ded093b30c6d59fce10aca3ac7c927df254e588da7b6d14f695181";
+  };
+
+  propagatedBuildInputs = [ pandas ];
+
+  checkInputs = [ pytest ];
+
+  checkPhase = ''
+    py.test vega_datasets --doctest-modules
+  '';
+
+  meta = with lib; {
+    description = "A Python package for offline access to vega datasets";
+    homepage = https://github.com/altair-viz/vega_datasets;
+    license = licenses.mit;
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index add15eaae88..bd9d62c3e63 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -14566,6 +14566,8 @@ in {
     };
   };
 
+  vega_datasets = callPackage ../development/python-modules/vega_datasets { };
+
   virtkey = callPackage ../development/python-modules/virtkey { };
 
   virtual-display = callPackage ../development/python-modules/virtual-display { };

From e82de5730fadd81899c964e8dbd03a540ffa380e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Sun, 15 Jul 2018 15:38:42 +0200
Subject: [PATCH 088/139] python.pkgs.altair: fix build

---
 .../python-modules/altair/default.nix            | 16 +++++++++-------
 1 file changed, 9 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/python-modules/altair/default.nix b/pkgs/development/python-modules/altair/default.nix
index 274fa0fbbf2..8e75f1f3d8d 100644
--- a/pkgs/development/python-modules/altair/default.nix
+++ b/pkgs/development/python-modules/altair/default.nix
@@ -1,5 +1,6 @@
-{ stdenv, buildPythonPackage, fetchPypi
-, pytest, glibcLocales, vega, pandas, ipython, traitlets }:
+{ stdenv, buildPythonPackage, fetchPypi, fetchpatch
+, pytest, jinja2, sphinx, vega_datasets, ipython, glibcLocales
+, entrypoints, jsonschema, numpy, pandas, six, toolz, typing }:
 
 buildPythonPackage rec {
   pname = "altair";
@@ -10,18 +11,19 @@ buildPythonPackage rec {
     sha256 = "e8b222588dde98ec614e6808357fde7fa321118db44cc909df2bf30158d931c0";
   };
 
-  postPatch = ''
-    sed -i "s/vega==/vega>=/g" setup.py
-  '';
+  patches = fetchpatch {
+    url = https://github.com/altair-viz/altair/commit/bfca8aecce9593c48aa5834e3f8f841deb58391c.patch;
+    sha256 = "01izc5d8c6ry3mh0k0hfasb6jc4720g75yw2qdlp9ja8mnjsp4k3";
+  };
 
-  checkInputs = [ pytest glibcLocales ];
+  checkInputs = [ pytest jinja2 sphinx vega_datasets ipython glibcLocales ];
 
   checkPhase = ''
     export LANG=en_US.UTF-8
     py.test altair --doctest-modules
   '';
 
-  propagatedBuildInputs = [ vega pandas ipython traitlets ];
+  propagatedBuildInputs = [ entrypoints jsonschema numpy pandas six toolz typing ];
 
   meta = with stdenv.lib; {
     description = "A declarative statistical visualization library for Python.";

From db00e457aca5e765957005ec9e1a41400e2bcb70 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 15 Jul 2018 16:26:41 +0200
Subject: [PATCH 089/139] gnome3.totem: disable vala plug-ins again

Apparently the intermittent build failure is still there,
not sure why I thought it was fixed.

Closes: https://github.com/NixOS/nixpkgs/issues/43518
---
 pkgs/desktops/gnome-3/core/totem/default.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/desktops/gnome-3/core/totem/default.nix b/pkgs/desktops/gnome-3/core/totem/default.nix
index df37377e52e..7cf1872da5a 100644
--- a/pkgs/desktops/gnome-3/core/totem/default.nix
+++ b/pkgs/desktops/gnome-3/core/totem/default.nix
@@ -34,6 +34,10 @@ stdenv.mkDerivation rec {
 
   mesonFlags = [
     "-Dwith-nautilusdir=lib/nautilus/extensions-3.0"
+    # https://bugs.launchpad.net/ubuntu/+source/totem/+bug/1712021
+    # https://bugzilla.gnome.org/show_bug.cgi?id=784236
+    # https://github.com/mesonbuild/meson/issues/1994
+    "-Denable-vala=no"
   ];
 
   wrapPrefixVariables = [ "PYTHONPATH" ];

From dab1b67f9aacc388332867fb2ee9490828e6ae45 Mon Sep 17 00:00:00 2001
From: Benjamin Hipple <bhipple@protonmail.com>
Date: Sun, 15 Jul 2018 11:16:32 -0400
Subject: [PATCH 090/139] pythonPackages.aws-adfs: init at 0.12.0 (#43458)

---
 .../python-modules/aws-adfs/default.nix       | 33 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 35 insertions(+)
 create mode 100644 pkgs/development/python-modules/aws-adfs/default.nix

diff --git a/pkgs/development/python-modules/aws-adfs/default.nix b/pkgs/development/python-modules/aws-adfs/default.nix
new file mode 100644
index 00000000000..c42ad6f1d6c
--- /dev/null
+++ b/pkgs/development/python-modules/aws-adfs/default.nix
@@ -0,0 +1,33 @@
+{ lib, buildPythonPackage, fetchPypi
+, pytest, pytestrunner, pytestcov, mock, glibcLocales, lxml, boto3, requests, click, configparser }:
+
+buildPythonPackage rec {
+  version = "0.12.0";
+  pname = "aws-adfs";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1cjrm61k6905dmhgrqyc5caxx5hbhj3sr6cx4r6sbdyz453i7pc6";
+  };
+
+  # Relax version constraint
+  patchPhase = ''
+    sed -i 's/coverage < 4/coverage/' setup.py
+  '';
+
+  # Test suite writes files to $HOME/.aws/, or /homeless-shelter if unset
+  HOME = ".";
+
+  # Required for python3 tests, along with glibcLocales
+  LC_ALL = "en_US.UTF-8";
+
+  checkInputs = [ glibcLocales pytest pytestrunner pytestcov mock ];
+  propagatedBuildInputs = [ lxml boto3 requests click configparser ];
+
+  meta = {
+    description = "Command line tool to ease aws cli authentication against ADFS";
+    homepage = https://github.com/venth/aws-adfs;
+    license = lib.licenses.psfl;
+    maintainers = [ lib.maintainers.bhipple ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index bd9d62c3e63..f04e149bac9 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -205,6 +205,8 @@ in {
 
   aws-xray-sdk = callPackage ../development/python-modules/aws-xray-sdk { };
 
+  aws-adfs = callPackage ../development/python-modules/aws-adfs { };
+
   # packages defined elsewhere
 
   amazon_kclpy = callPackage ../development/python-modules/amazon_kclpy { };

From 1d3138777559bcb2639cfee90bd1415a00142461 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Sun, 15 Jul 2018 18:24:27 +0200
Subject: [PATCH 091/139] groovy: 2.5.0 -> 2.5.1

---
 pkgs/development/interpreters/groovy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/interpreters/groovy/default.nix b/pkgs/development/interpreters/groovy/default.nix
index d2d923d783d..961cfb4dad0 100644
--- a/pkgs/development/interpreters/groovy/default.nix
+++ b/pkgs/development/interpreters/groovy/default.nix
@@ -4,11 +4,11 @@
 
 stdenv.mkDerivation rec {
   name = "groovy-${version}";
-  version = "2.5.0";
+  version = "2.5.1";
 
   src = fetchurl {
     url = "http://dl.bintray.com/groovy/maven/apache-groovy-binary-${version}.zip";
-    sha256 = "1qzciri8qjx5p7x015rk5ws7gj53qidamp85r2r7aj6ssyp3r40k";
+    sha256 = "1zqq2jsaq547rm8qh8zpj36059jahsba733cwrmg6iq0c8ai4z3s";
   };
 
   buildInputs = [ unzip makeWrapper ];

From 26bd3e994be43590f812282b2dbfb4e8a93356a5 Mon Sep 17 00:00:00 2001
From: sjau <github.com@sjau.ch>
Date: Sun, 15 Jul 2018 18:32:47 +0200
Subject: [PATCH 092/139] flexget: 2.13.5 -> 2.14.5 (#43570)

---
 pkgs/applications/networking/flexget/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/flexget/default.nix b/pkgs/applications/networking/flexget/default.nix
index ecad7549117..901229f86ca 100644
--- a/pkgs/applications/networking/flexget/default.nix
+++ b/pkgs/applications/networking/flexget/default.nix
@@ -36,11 +36,11 @@ with python'.pkgs;
 
 buildPythonApplication rec {
   pname = "FlexGet";
-  version = "2.13.5";
+  version = "2.14.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1lkmxwy7k4zlcqpigwk8skc2zi8a70vrw21pz80wvmf9yg0wc9z9";
+    sha256 = "05kczj10p8f9b1ll4ii5anbg6nk5dhb7lm9skbj6ix7v9hi48hz4";
   };
 
   postPatch = ''

From 2c65c6a08c36f68f760458d3e78610b903219b72 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 15 Jul 2018 18:48:09 +0200
Subject: [PATCH 093/139] =?UTF-8?q?pulseeffects:=204.1.6=20=E2=86=92=204.1?=
 =?UTF-8?q?.7?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/applications/audio/pulseeffects/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/pulseeffects/default.nix b/pkgs/applications/audio/pulseeffects/default.nix
index 6a24a11ddda..6a1237dd9b3 100644
--- a/pkgs/applications/audio/pulseeffects/default.nix
+++ b/pkgs/applications/audio/pulseeffects/default.nix
@@ -40,13 +40,13 @@ let
   ];
 in stdenv.mkDerivation rec {
   name = "pulseeffects-${version}";
-  version = "4.1.6";
+  version = "4.1.7";
 
   src = fetchFromGitHub {
     owner = "wwmm";
     repo = "pulseeffects";
     rev = "v${version}";
-    sha256 = "0fxd1rgf3l667gibd6brfrs8vkq6882w7jql871j5q5ynz1c9j46";
+    sha256 = "13yj1958jsz76zxi3ag133i4337cicvm5b58l22g2xvbqa5vraq9";
   };
 
   nativeBuildInputs = [

From 05c2aa212e062aefcc058b86adf7e367e8f1f6ea Mon Sep 17 00:00:00 2001
From: Ricardo Ardissone <ricardo.ardissone@gmail.com>
Date: Fri, 13 Jul 2018 00:32:30 -0300
Subject: [PATCH 094/139] cataclysm-dda-git: 2017-12-09 -> 2018-07-15

---
 pkgs/games/cataclysm-dda/git.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/games/cataclysm-dda/git.nix b/pkgs/games/cataclysm-dda/git.nix
index fe4dcb25175..785cf91c8f2 100644
--- a/pkgs/games/cataclysm-dda/git.nix
+++ b/pkgs/games/cataclysm-dda/git.nix
@@ -3,14 +3,14 @@ SDL2_mixer, freetype, gettext, CoreFoundation, Cocoa,
 tiles ? true }:
 
 stdenv.mkDerivation rec {
-  version = "2017-12-09";
+  version = "2018-07-15";
   name = "cataclysm-dda-git-${version}";
 
   src = fetchFromGitHub {
     owner = "CleverRaven";
     repo = "Cataclysm-DDA";
-    rev = "24e92956db5587809750283873c242cc0796d7e6";
-    sha256 = "1a7kdmx76na4g65zra01qaq98lxp9j2dl9ddv09r0p5yxaizw68z";
+    rev = "e1e5d81";
+    sha256 = "198wfj8l1p8xlwicj92cq237pzv2ha9pcf240y7ijhjpmlc9jkr1";
   };
 
   nativeBuildInputs = [ pkgconfig ];
@@ -89,6 +89,7 @@ stdenv.mkDerivation rec {
       substances or radiation, now more closely resemble insects, birds or fish
       than their original form.
     '';
+    maintainers = with maintainers; [ rardiol ];
     homepage = https://cataclysmdda.org/;
     license = licenses.cc-by-sa-30;
     platforms = platforms.unix;

From 5901dae6739f0189032a97a71c75055cc8e2309e Mon Sep 17 00:00:00 2001
From: Ricardo Ardissone <ricardo.ardissone@gmail.com>
Date: Fri, 13 Jul 2018 17:27:42 -0300
Subject: [PATCH 095/139] cataclysm-dda-git: debug flag

---
 pkgs/games/cataclysm-dda/git.nix | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/pkgs/games/cataclysm-dda/git.nix b/pkgs/games/cataclysm-dda/git.nix
index 785cf91c8f2..d1d1b4c54d4 100644
--- a/pkgs/games/cataclysm-dda/git.nix
+++ b/pkgs/games/cataclysm-dda/git.nix
@@ -1,6 +1,6 @@
 { fetchFromGitHub, stdenv, pkgconfig, ncurses, lua, SDL2, SDL2_image, SDL2_ttf,
 SDL2_mixer, freetype, gettext, CoreFoundation, Cocoa,
-tiles ? true }:
+tiles ? true, debug ? false }:
 
 stdenv.mkDerivation rec {
   version = "2018-07-15";
@@ -31,7 +31,6 @@ stdenv.mkDerivation rec {
   makeFlags = with stdenv.lib; [
     "PREFIX=$(out)"
     "LUA=1"
-    "RELEASE=1"
     "USE_HOME_DIR=1"
     "LANGUAGES=all"
     "VERSION=git-${version}-${substring 0 8 src.rev}"
@@ -41,6 +40,8 @@ stdenv.mkDerivation rec {
   ] ++ optionals stdenv.isDarwin [
     "NATIVE=osx"
     "CLANG=1"
+  ] ++ optionals (! debug) [
+    "RELEASE=1"
   ];
 
   postInstall = with stdenv.lib; optionalString (tiles && !stdenv.isDarwin) ''
@@ -64,6 +65,8 @@ stdenv.mkDerivation rec {
   # make: *** [Makefile:687: obj/tiles/weather_data.o] Error 1
   enableParallelBuilding = false;
 
+  dontStrip = debug;
+
   meta = with stdenv.lib; {
     description = "A free, post apocalyptic, zombie infested rogue-like";
     longDescription = ''

From bea8e84964124fe07c3750d13cb332e51f0ed284 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 15 Jul 2018 19:00:53 +0200
Subject: [PATCH 096/139] =?UTF-8?q?phpPackages.php-cs-fixer:=202.12.1=20?=
 =?UTF-8?q?=E2=86=92=202.12.2?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/top-level/php-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/php-packages.nix b/pkgs/top-level/php-packages.nix
index 7861b2a231d..a1761e68631 100644
--- a/pkgs/top-level/php-packages.nix
+++ b/pkgs/top-level/php-packages.nix
@@ -383,11 +383,11 @@ let
 
   php-cs-fixer = pkgs.stdenv.mkDerivation rec {
     name = "php-cs-fixer-${version}";
-    version = "2.12.1";
+    version = "2.12.2";
 
     src = pkgs.fetchurl {
       url = "https://github.com/FriendsOfPHP/PHP-CS-Fixer/releases/download/v${version}/php-cs-fixer.phar";
-      sha256 = "1ifwb30wddp5blqnrkdmf0x11dk7nbxj4z2v5403fn7wfhgvibd2";
+      sha256 = "19cq04x1wi489259vyad15zy6y0k3qd7dj77pcf74gxqw92hgg5c";
     };
 
     phases = [ "installPhase" ];

From bfb393f55e3346941df552bb10b89af9788c52a0 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 20:07:34 +0300
Subject: [PATCH 097/139] nginx-fancyindex: init at 0.4.3

---
 pkgs/servers/http/nginx/modules.nix | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 1919cfddf62..869551ef03a 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -15,6 +15,15 @@
     inputs = [ pkgs.brotli ];
   };
 
+  fancyindex = {
+    src = fetchFromGitHub {
+      owner = "aperezdc";
+      repo = "ngx-fancyindex";
+      rev = "v0.4.3";
+      sha256 = "12xdx6a76sfrq0yciylvyjlnvyczszpadn31jqya8c2dzdkyyx7f";
+    };
+  };
+
   ipscrub = {
     src = fetchFromGitHub {
       owner = "masonicboom";

From 98792fe35152d3470929b40ad83359b605233a76 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 15 Jul 2018 19:10:02 +0200
Subject: [PATCH 098/139] =?UTF-8?q?flatpak-builder:=200.99.1=20=E2=86=92?=
 =?UTF-8?q?=200.99.3?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .../tools/flatpak-builder/default.nix         |  4 +--
 .../tools/flatpak-builder/fix-paths.patch     | 30 ++++++++++++++-----
 2 files changed, 24 insertions(+), 10 deletions(-)

diff --git a/pkgs/development/tools/flatpak-builder/default.nix b/pkgs/development/tools/flatpak-builder/default.nix
index 5552bdcc5e6..377791007a3 100644
--- a/pkgs/development/tools/flatpak-builder/default.nix
+++ b/pkgs/development/tools/flatpak-builder/default.nix
@@ -36,7 +36,7 @@
 }:
 
 let
-  version = "0.99.1";
+  version = "0.99.3";
 in stdenv.mkDerivation rec {
   name = "flatpak-builder-${version}";
 
@@ -44,7 +44,7 @@ in stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://github.com/flatpak/flatpak-builder/releases/download/${version}/${name}.tar.xz";
-    sha256 = "0xgywl4qsxq7lw1v7hmvczzv3pl12bzz3jv59y8s5gbk54rzbyi5";
+    sha256 = "0sq3rcy3vwa36p6wq63wdvkk0hrs3qj1ngk26j9947nc14z39plk";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/tools/flatpak-builder/fix-paths.patch b/pkgs/development/tools/flatpak-builder/fix-paths.patch
index 001ddd64568..6b82e623a02 100644
--- a/pkgs/development/tools/flatpak-builder/fix-paths.patch
+++ b/pkgs/development/tools/flatpak-builder/fix-paths.patch
@@ -1,6 +1,6 @@
 --- a/src/builder-context.c
 +++ b/src/builder-context.c
-@@ -711,7 +711,7 @@
+@@ -763,7 +763,7 @@
    g_autoptr(GFile) rofiles_base = NULL;
    g_autoptr(GFile) rofiles_dir = NULL;
    g_autofree char *tmpdir_name = NULL;
@@ -31,7 +31,7 @@
    return res;
 --- a/src/builder-source-archive.c
 +++ b/src/builder-source-archive.c
-@@ -401,7 +401,7 @@
+@@ -430,7 +430,7 @@
    va_list ap;
  
    va_start (ap, error);
@@ -40,7 +40,7 @@
    va_end (ap);
  
    return res;
-@@ -416,7 +416,7 @@
+@@ -445,7 +445,7 @@
    va_list ap;
  
    va_start (ap, error);
@@ -49,7 +49,7 @@
    va_end (ap);
  
    return res;
-@@ -428,7 +428,7 @@
+@@ -457,7 +457,7 @@
         GError **error)
  {
    gboolean res;
@@ -58,6 +58,15 @@
        "sh", /* shell's $0 */
        rpm_path, /* shell's $1 */
        NULL };
+@@ -604,7 +604,7 @@
+   va_list ap;
+ 
+   va_start (ap, error);
+-  res = flatpak_spawn (dir, NULL, 0, error, "git", ap);
++  res = flatpak_spawn (dir, NULL, 0, error, "@git@", ap);
+   va_end (ap);
+ 
+   return res;
 --- a/src/builder-source-bzr.c
 +++ b/src/builder-source-bzr.c
 @@ -124,7 +124,7 @@
@@ -71,7 +80,7 @@
    return res;
 --- a/src/builder-source-patch.c
 +++ b/src/builder-source-patch.c
-@@ -204,11 +204,11 @@
+@@ -215,15 +215,15 @@
  
    args = g_ptr_array_new ();
    if (use_git) {
@@ -79,6 +88,11 @@
 +    g_ptr_array_add (args, "@git@");
      g_ptr_array_add (args, "apply");
      g_ptr_array_add (args, "-v");
+   } else if (use_git_am) {
+-    g_ptr_array_add (args, "git");
++    g_ptr_array_add (args, "@git@");
+     g_ptr_array_add (args, "am");
+     g_ptr_array_add (args, "--keep-cr");
    } else {
 -    g_ptr_array_add (args, "patch");
 +    g_ptr_array_add (args, "@patch@");
@@ -87,7 +101,7 @@
      g_ptr_array_add (args, (gchar *) extra_options[i]);
 --- a/src/builder-utils.c
 +++ b/src/builder-utils.c
-@@ -139,7 +139,7 @@
+@@ -149,7 +149,7 @@
    va_list ap;
  
    va_start (ap, error);
@@ -96,7 +110,7 @@
    va_end (ap);
  
    return res;
-@@ -153,7 +153,7 @@
+@@ -163,7 +163,7 @@
    va_list ap;
  
    va_start (ap, error);
@@ -105,7 +119,7 @@
    va_end (ap);
  
    return res;
-@@ -167,7 +167,7 @@
+@@ -177,7 +177,7 @@
    va_list ap;
  
    va_start (ap, error);

From 02ce906d8ae83d40cc9b269b7dc12f4aa477c731 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 19:00:54 +0200
Subject: [PATCH 099/139] subfinder: init at 2018-07-15

---
 pkgs/tools/networking/subfinder/default.nix | 29 +++++++++++
 pkgs/tools/networking/subfinder/deps.nix    | 57 +++++++++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 +
 3 files changed, 88 insertions(+)
 create mode 100644 pkgs/tools/networking/subfinder/default.nix
 create mode 100644 pkgs/tools/networking/subfinder/deps.nix

diff --git a/pkgs/tools/networking/subfinder/default.nix b/pkgs/tools/networking/subfinder/default.nix
new file mode 100644
index 00000000000..2a4cf3506df
--- /dev/null
+++ b/pkgs/tools/networking/subfinder/default.nix
@@ -0,0 +1,29 @@
+{ stdenv, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "subfinder-git-${version}";
+  version = "2018-07-15";
+
+  goPackagePath = "github.com/subfinder/subfinder";
+
+  src = fetchFromGitHub {
+    owner = "subfinder";
+    repo = "subfinder";
+    rev = "26596affed961c535676395f443acc5af95ac9e6";
+    sha256 = "0m842jyrwlg4kaja1m3kca07jf20fxva0frg66b13zpsm8hdp10q";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with stdenv.lib; {
+    description = "Subdomain discovery tool";
+    longDescription = ''
+      SubFinder is a subdomain discovery tool that discovers valid
+      subdomains for websites. Designed as a passive framework to be
+      useful for bug bounties and safe for penetration testing.
+    '';
+    homepage = https://github.com/subfinder/subfinder;
+    license = licenses.mit;
+    maintainers = with maintainers; [ fpletz ];
+  };
+}
diff --git a/pkgs/tools/networking/subfinder/deps.nix b/pkgs/tools/networking/subfinder/deps.nix
new file mode 100644
index 00000000000..8d8a1a571d6
--- /dev/null
+++ b/pkgs/tools/networking/subfinder/deps.nix
@@ -0,0 +1,57 @@
+# file generated from Gopkg.lock using dep2nix (https://github.com/nixcloud/dep2nix)
+[
+  {
+    goPackagePath  = "github.com/bogdanovich/dns_resolver";
+    fetch = {
+      type = "git";
+      url = "https://github.com/bogdanovich/dns_resolver";
+      rev =  "a8e42bc6a5b6c9a93be01ca204be7e17f7ba4cd2";
+      sha256 = "0l1hgxxqafappw0y18sbkkk2vijclvf1b8x73b0nhi4r74wyib49";
+    };
+  }
+  {
+    goPackagePath  = "github.com/miekg/dns";
+    fetch = {
+      type = "git";
+      url = "https://github.com/miekg/dns";
+      rev =  "3e6e47bc11bc7f93f9e2f1c7bd6481ba4802808b";
+      sha256 = "1vmsnv6r799z5lz5g9l2dh065m9003yfjb18w8n6c053hp8jvrfm";
+    };
+  }
+  {
+    goPackagePath  = "github.com/subfinder/subfinder";
+    fetch = {
+      type = "git";
+      url = "https://github.com/subfinder/subfinder";
+      rev =  "26596affed961c535676395f443acc5af95ac9e6";
+      sha256 = "0m842jyrwlg4kaja1m3kca07jf20fxva0frg66b13zpsm8hdp10q";
+    };
+  }
+  {
+    goPackagePath  = "github.com/subfinder/urlx";
+    fetch = {
+      type = "git";
+      url = "https://github.com/subfinder/urlx";
+      rev =  "8e731c8be06edbae81cab15937cd3c291c2a7680";
+      sha256 = "11vrx1c0mq1h6lwpsvibd3386wy4kirzmmm8ibrlx2gj0h6pkkcb";
+    };
+  }
+  {
+    goPackagePath  = "golang.org/x/crypto";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/crypto";
+      rev =  "a49355c7e3f8fe157a85be2f77e6e269a0f89602";
+      sha256 = "020q1laxjx5kcmnqy4wmdb63zhb0lyq6wpy40axhswzg2nd21s44";
+    };
+  }
+  {
+    goPackagePath  = "golang.org/x/net";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/net";
+      rev =  "d0887baf81f4598189d4e12a37c6da86f0bba4d0";
+      sha256 = "00dmz9a5d3myyb0256b33vf1bk8wv1khhh88kcvbmqsfd6x1n6p5";
+    };
+  }
+]
\ No newline at end of file
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a9880be0eec..0926d01d0bf 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -5246,6 +5246,8 @@ with pkgs;
 
   subsonic = callPackage ../servers/misc/subsonic { };
 
+  subfinder = callPackage ../tools/networking/subfinder { };
+
   surfraw = callPackage ../tools/networking/surfraw { };
 
   swagger-codegen = callPackage ../tools/networking/swagger-codegen { };

From c0fd62dab4f454f901b6e654e0f568448ee4c819 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 19:01:59 +0200
Subject: [PATCH 100/139] tpacpi-bat: fix path to cat

---
 pkgs/os-specific/linux/tpacpi-bat/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/tpacpi-bat/default.nix b/pkgs/os-specific/linux/tpacpi-bat/default.nix
index fbc1685c577..b4e584f2979 100644
--- a/pkgs/os-specific/linux/tpacpi-bat/default.nix
+++ b/pkgs/os-specific/linux/tpacpi-bat/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, perl, kmod }:
+{ stdenv, fetchFromGitHub, perl, kmod, coreutils }:
 
 # Requires the acpi_call kernel module in order to run.
 stdenv.mkDerivation rec {
@@ -20,7 +20,9 @@ stdenv.mkDerivation rec {
   '';
 
   postPatch = ''
-    substituteInPlace tpacpi-bat --replace modprobe ${kmod}/bin/modprobe
+    substituteInPlace tpacpi-bat \
+      --replace modprobe ${kmod}/bin/modprobe \
+      --replace cat ${coreutils}/bin/cat
   '';
 
   meta = {

From 6c33223f5f681aba159070a749139c88aecdb0ef Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 20:11:05 +0200
Subject: [PATCH 101/139] jool: 3.5.4 -> 3.5.7

---
 pkgs/os-specific/linux/jool/default.nix | 3 ++-
 pkgs/os-specific/linux/jool/source.nix  | 4 ++--
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/os-specific/linux/jool/default.nix b/pkgs/os-specific/linux/jool/default.nix
index 37dd4d727ec..84a621e7f12 100644
--- a/pkgs/os-specific/linux/jool/default.nix
+++ b/pkgs/os-specific/linux/jool/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, kernel }:
 
-assert stdenv.lib.versionOlder kernel.version "4.13";
+assert stdenv.lib.versionOlder kernel.version "4.17";
 
 let
   sourceAttrs = (import ./source.nix) { inherit fetchFromGitHub; };
@@ -11,6 +11,7 @@ stdenv.mkDerivation {
 
   src = sourceAttrs.src;
 
+  nativeBuildInputs = kernel.moduleBuildDependencies;
   hardeningDisable = [ "pic" ];
 
   prePatch = ''
diff --git a/pkgs/os-specific/linux/jool/source.nix b/pkgs/os-specific/linux/jool/source.nix
index ace103a92f9..f15b91f9f14 100644
--- a/pkgs/os-specific/linux/jool/source.nix
+++ b/pkgs/os-specific/linux/jool/source.nix
@@ -1,11 +1,11 @@
 { fetchFromGitHub }:
 
 rec {
-  version = "3.5.4";
+  version = "3.5.7";
   src = fetchFromGitHub {
     owner = "NICMx";
     repo = "Jool";
     rev = "v${version}";
-    sha256 = "09b9zcxgmy59jb778lkdyslx777bpsl216kkivw0zwfwsgd4pyz5";
+    sha256 = "1qxhrchhm4lbyxkp6wm47a85aa4d9wlyy3kdijl8rarngvh8j1yx";
   };
 }

From d856ad7fc4006299d19e137af66ab93d14e4c7b7 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 20:15:36 +0200
Subject: [PATCH 102/139] dnsmasq: 2.78 -> 2.79

---
 pkgs/tools/networking/dnsmasq/default.nix | 14 ++------------
 1 file changed, 2 insertions(+), 12 deletions(-)

diff --git a/pkgs/tools/networking/dnsmasq/default.nix b/pkgs/tools/networking/dnsmasq/default.nix
index 6205934084e..ebbe5a11b52 100644
--- a/pkgs/tools/networking/dnsmasq/default.nix
+++ b/pkgs/tools/networking/dnsmasq/default.nix
@@ -11,23 +11,13 @@ let
   ]);
 in
 stdenv.mkDerivation rec {
-  name = "dnsmasq-2.78";
+  name = "dnsmasq-2.79";
 
   src = fetchurl {
     url = "http://www.thekelleys.org.uk/dnsmasq/${name}.tar.xz";
-    sha256 = "0ar5h5v3kas2qx2wgy5iqin15gc4jhqrqs067xacgc3lii1rz549";
+    sha256 = "07w6cw706yyahwvbvslhkrbjf2ynv567cgy9pal8bz8lrbsp9bbq";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "CVE-2017-15107.patch";
-      url = "http://thekelleys.org.uk/gitweb/?p=dnsmasq.git;a=patch;h=4fe6744a220eddd3f1749b40cac3dfc510787de6";
-      sha256 = "0r8grhh1q46z8v6manx1vvfpf2vmchfzsg7l1djh63b1fy1mbjkk";
-      # changelog does not apply cleanly but its safe to skip
-      excludes = [ "CHANGELOG" ];
-    })
-  ];
-
   preBuild = ''
     makeFlagsArray=("COPTS=${copts}")
   '';

From fb130874fdcb8bc8ac4a67302bb122bff26bb712 Mon Sep 17 00:00:00 2001
From: William Casarin <jb55@jb55.com>
Date: Fri, 13 Jul 2018 12:46:59 -0700
Subject: [PATCH 103/139] clipmenu: init at 5.4.0

clipmenu is a simple tool for managing you clipboard with dmenu.
---
 pkgs/applications/misc/clipmenu/default.nix | 33 +++++++++++++++++++++
 pkgs/tools/misc/clipnotify/default.nix      | 26 ++++++++++++++++
 pkgs/top-level/all-packages.nix             |  4 +++
 3 files changed, 63 insertions(+)
 create mode 100644 pkgs/applications/misc/clipmenu/default.nix
 create mode 100644 pkgs/tools/misc/clipnotify/default.nix

diff --git a/pkgs/applications/misc/clipmenu/default.nix b/pkgs/applications/misc/clipmenu/default.nix
new file mode 100644
index 00000000000..679724ed062
--- /dev/null
+++ b/pkgs/applications/misc/clipmenu/default.nix
@@ -0,0 +1,33 @@
+{ clipnotify, makeWrapper, xsel, dmenu2, utillinux, gawk, stdenv, fetchFromGitHub, lib }:
+let
+  runtimePath = lib.makeBinPath [ clipnotify xsel dmenu2 utillinux gawk ];
+in
+stdenv.mkDerivation rec {
+  name = "clipmenu-${version}";
+  version = "5.4.0";
+
+  src = fetchFromGitHub {
+    owner  = "cdown";
+    repo   = "clipmenu";
+    rev    = version;
+    sha256 = "1qbpca0wny6i222vbikfl2znn3fynhbl4100qs8v4wn27ra5p0mi";
+  };
+
+  buildInputs = [ makeWrapper ];
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp clipdel clipmenu clipmenud $out/bin
+
+    for bin in $out/bin/*; do
+      wrapProgram "$bin" --prefix PATH : "${runtimePath}"
+    done
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Clipboard management using dmenu";
+    inherit (src.meta) homepage;
+    maintainers = with maintainers; [ jb55 ];
+    license = licenses.publicDomain;
+  };
+}
diff --git a/pkgs/tools/misc/clipnotify/default.nix b/pkgs/tools/misc/clipnotify/default.nix
new file mode 100644
index 00000000000..6bd0f8be2fa
--- /dev/null
+++ b/pkgs/tools/misc/clipnotify/default.nix
@@ -0,0 +1,26 @@
+{ libX11, libXfixes, stdenv, fetchFromGitHub }:
+stdenv.mkDerivation rec {
+  name = "clipnotify-${version}";
+  version = "git-2018-02-20";
+
+  src = fetchFromGitHub {
+    owner = "cdown";
+    repo  = "clipnotify";
+    rev   = "9cb223fbe494c5b71678a9eae704c21a97e3bddd";
+    sha256 = "1x9avjq0fgw0svcbw6b6873qnsqxbacls9sipmcv86xia4bxh8dn";
+  };
+
+  buildInputs = [ libX11 libXfixes ];
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp clipnotify $out/bin
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Notify on new X clipboard events";
+    inherit (src.meta) homepage;
+    maintainers = with maintainers; [ jb55 ];
+    license = licenses.publicDomain;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a9880be0eec..589e9180d3b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -5905,6 +5905,8 @@ with pkgs;
     gccCross = pkgsCross.ben-nanonote.buildPackages.gccCrossStageStatic;
   };
 
+  clipnotify = callPackage ../tools/misc/clipnotify { };
+
   xclip = callPackage ../tools/misc/xclip { };
 
   xcwd = callPackage ../tools/X11/xcwd { };
@@ -15469,6 +15471,8 @@ with pkgs;
 
   clipgrab = callPackage ../applications/video/clipgrab { };
 
+  clipmenu = callPackage ../applications/misc/clipmenu { };
+
   clipit = callPackage ../applications/misc/clipit { };
 
   cloud-print-connector = callPackage ../servers/cloud-print-connector { };

From 6c1eb15a3b6c64f01544ce1ccfc866efaf6f40b9 Mon Sep 17 00:00:00 2001
From: William Casarin <jb55@jb55.com>
Date: Fri, 13 Jul 2018 12:47:57 -0700
Subject: [PATCH 104/139] nixos/modules: add clipmenu user service

add a clipmenud daemon user service
---
 nixos/modules/module-list.nix            |  1 +
 nixos/modules/services/misc/clipmenu.nix | 31 ++++++++++++++++++++++++
 2 files changed, 32 insertions(+)
 create mode 100644 nixos/modules/services/misc/clipmenu.nix

diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index 988693d924b..cf30fc693fc 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -320,6 +320,7 @@
   ./services/misc/canto-daemon.nix
   ./services/misc/calibre-server.nix
   ./services/misc/cfdyndns.nix
+  ./services/misc/clipmenu.nix
   ./services/misc/cpuminer-cryptonight.nix
   ./services/misc/cgminer.nix
   ./services/misc/confd.nix
diff --git a/nixos/modules/services/misc/clipmenu.nix b/nixos/modules/services/misc/clipmenu.nix
new file mode 100644
index 00000000000..3ba050044ca
--- /dev/null
+++ b/nixos/modules/services/misc/clipmenu.nix
@@ -0,0 +1,31 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.services.clipmenu;
+in {
+
+  options.services.clipmenu = {
+    enable = mkEnableOption "clipmenu, the clipboard management daemon";
+
+    package = mkOption {
+      type = types.package;
+      default = pkgs.clipmenu;
+      defaultText = "pkgs.clipmenu";
+      description = "clipmenu derivation to use.";
+    };
+  };
+
+  config = mkIf cfg.enable {
+    systemd.user.services.clipmenu = {
+      enable      = true;
+      description = "Clipboard management daemon";
+      wantedBy = [ "graphical-session.target" ];
+      after    = [ "graphical-session.target" ];
+      serviceConfig.ExecStart = "${cfg.package}/bin/clipmenud";
+    };
+
+    environment.systemPackages = [ cfg.package ];
+  };
+}

From b68155de84fc5516e931d79194366590902a9789 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 20:38:36 +0200
Subject: [PATCH 105/139] batman_adv: 2018.0 -> 2018.1

---
 pkgs/os-specific/linux/batman-adv/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/batman-adv/default.nix b/pkgs/os-specific/linux/batman-adv/default.nix
index 8f835b6d7ed..29db64ab48f 100644
--- a/pkgs/os-specific/linux/batman-adv/default.nix
+++ b/pkgs/os-specific/linux/batman-adv/default.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchurl, kernel }:
 
-let base = "batman-adv-2018.0"; in
+let base = "batman-adv-2018.1"; in
 
 stdenv.mkDerivation rec {
   name = "${base}-${kernel.version}";
 
   src = fetchurl {
     url = "http://downloads.open-mesh.org/batman/releases/${base}/${base}.tar.gz";
-    sha256 = "0v2pyy9lxyy71nr9600k9935qcpn2wpyl9fsf2a4m4d2x0wgh9j8";
+    sha256 = "12q48dw02p3dswdlrklqd2jxw9n51z1vnnnzpf527jg5pf6v4rmq";
   };
 
   nativeBuildInputs = kernel.moduleBuildDependencies;

From 27b8072a98923d3732cfa46a738c42e08b7a1bdd Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 20:40:52 +0200
Subject: [PATCH 106/139] prometheus-alertmanager: 0.14.0 -> 0.15.1

---
 pkgs/servers/monitoring/prometheus/alertmanager.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/monitoring/prometheus/alertmanager.nix b/pkgs/servers/monitoring/prometheus/alertmanager.nix
index 2f9016b7499..38b78926177 100644
--- a/pkgs/servers/monitoring/prometheus/alertmanager.nix
+++ b/pkgs/servers/monitoring/prometheus/alertmanager.nix
@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "alertmanager-${version}";
-  version = "0.14.0";
+  version = "0.15.1";
   rev = "v${version}";
 
   goPackagePath = "github.com/prometheus/alertmanager";
@@ -11,7 +11,7 @@ buildGoPackage rec {
     inherit rev;
     owner = "prometheus";
     repo = "alertmanager";
-    sha256 = "0f6yi19zffxnp3dlr4zs52b7bllks3kjxkdn9zvvi5lvpkzmba5j";
+    sha256 = "110l8xy3bkgq137hvvz2v5cr464j02fy43lvgd3l8n5v8qmv81vy";
   };
 
   # Tests exist, but seem to clash with the firewall.

From 1638d91d7a804953714985f9b93021400b07fb2f Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 20:42:47 +0200
Subject: [PATCH 107/139] matterircd: 0.16.5 -> 0.18.2

---
 pkgs/servers/mattermost/matterircd.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/mattermost/matterircd.nix b/pkgs/servers/mattermost/matterircd.nix
index d489deb5944..6707055eaa6 100644
--- a/pkgs/servers/mattermost/matterircd.nix
+++ b/pkgs/servers/mattermost/matterircd.nix
@@ -2,13 +2,13 @@
 
 buildGoPackage rec {
   name = "matterircd-${version}";
-  version = "0.16.5";
+  version = "0.18.2";
 
   src = fetchFromGitHub {
     owner = "42wim";
     repo = "matterircd";
     rev = "v${version}";
-    sha256 = "1rsmc2dpf25rkl8c085xwssbry3hv1gv318m7rdj616agx4m7yr2";
+    sha256 = "0g57g91v7208yynf758k9v73jdhz4fbc1v23p97rzrl97aq0rd5r";
   };
 
   goPackagePath = "github.com/42wim/matterircd";

From 3239ef84ea79e4d33c6b4ff072dfbbfb06b9f715 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 20:44:41 +0200
Subject: [PATCH 108/139] nginxMainline: 1.13.12 -> 1.15.1

---
 pkgs/servers/http/nginx/mainline.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/mainline.nix b/pkgs/servers/http/nginx/mainline.nix
index 71cb6fc72ab..5afd73c8868 100644
--- a/pkgs/servers/http/nginx/mainline.nix
+++ b/pkgs/servers/http/nginx/mainline.nix
@@ -1,6 +1,6 @@
 { callPackage, ... }@args:
 
 callPackage ./generic.nix (args // {
-  version = "1.13.12";
-  sha256 = "1pl5ii1w2ycxprxk8zdnxlpdd1dia6hyrns7mnqkm3fv5ihgb4pv";
+  version = "1.15.1";
+  sha256 = "0q2lkpnfqf74p22vrcldx0gcnss3is7rnp54fgpvhcpqsxc6h867";
 })

From 29da51c8e93df5989eda111e21474404ada72727 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 20:48:11 +0200
Subject: [PATCH 109/139] mpd: 0.20.18 -> 0.20.20

---
 pkgs/servers/mpd/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/mpd/default.nix b/pkgs/servers/mpd/default.nix
index fde66a71e2e..35637e7f73a 100644
--- a/pkgs/servers/mpd/default.nix
+++ b/pkgs/servers/mpd/default.nix
@@ -34,7 +34,7 @@ let
   opt = stdenv.lib.optional;
   mkFlag = c: f: if c then "--enable-${f}" else "--disable-${f}";
   major = "0.20";
-  minor = "18";
+  minor = "20";
 
 in stdenv.mkDerivation rec {
   name = "mpd-${version}";
@@ -44,7 +44,7 @@ in stdenv.mkDerivation rec {
     owner  = "MusicPlayerDaemon";
     repo   = "MPD";
     rev    = "v${version}";
-    sha256 = "020vdn94fwjbldnkgr2h3dk9sm6f5k59qic568mw88yi7cr3mjsh";
+    sha256 = "0v7xpsr8b4d0q9vh1wni0qbkbkxdjpn639qm2q553ckk5idas4lm";
   };
 
   patches = [ ./x86.patch ];

From 472ab64e0f8836dfc7c21db389e73507b9e07ffd Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 21:14:19 +0200
Subject: [PATCH 110/139] nitrokey-app: 1.2 -> 1.3.1

---
 pkgs/tools/security/nitrokey-app/default.nix  | 23 +++++++++++++++----
 .../security/nitrokey-app/udev-rules.nix      |  4 ++--
 pkgs/top-level/all-packages.nix               |  2 +-
 3 files changed, 21 insertions(+), 8 deletions(-)

diff --git a/pkgs/tools/security/nitrokey-app/default.nix b/pkgs/tools/security/nitrokey-app/default.nix
index 4407d5abbfa..67e388d5728 100644
--- a/pkgs/tools/security/nitrokey-app/default.nix
+++ b/pkgs/tools/security/nitrokey-app/default.nix
@@ -1,29 +1,42 @@
-{ stdenv, bash-completion, cmake, fetchgit, hidapi, libusb1, pkgconfig, qt5 }:
+{ stdenv, makeWrapper, bash-completion, cmake, fetchgit, hidapi, libusb1, pkgconfig
+, qtbase, qttranslations, qtsvg }:
 
 stdenv.mkDerivation rec {
   name = "nitrokey-app-${version}";
-  version = "1.2";
+  version = "1.3.1";
 
   # We use fetchgit instead of fetchFromGitHub because of necessary git submodules
   src = fetchgit {
     url = "https://github.com/Nitrokey/nitrokey-app.git";
     rev = "v${version}";
-    sha256 = "0mm6vlgxlmpahmmcn4awnfpx5rx5bj8m44cywhgxlmz012x73hzi";
+    sha256 = "0zf2f7g5scqd5xfzvmmpvfc7d1w66rf22av0qv6s37875c61j9r9";
   };
 
+  postPatch = ''
+    substituteInPlace libnitrokey/CMakeLists.txt \
+      --replace '/data/41-nitrokey.rules' '/libnitrokey/data/41-nitrokey.rules'
+  '';
+
   buildInputs = [
     bash-completion
     hidapi
     libusb1
-    qt5.qtbase
-    qt5.qttranslations
+    qtbase
+    qttranslations
+    qtsvg
   ];
   nativeBuildInputs = [
     cmake
     pkgconfig
+    makeWrapper
   ];
   cmakeFlags = "-DCMAKE_BUILD_TYPE=Release";
 
+  postFixup = ''
+    wrapProgram $out/bin/nitrokey-app \
+      --prefix QT_PLUGIN_PATH : "${qtbase}/${qtbase.qtPluginPrefix}"
+  '';
+
   meta = with stdenv.lib; {
     description      = "Provides extra functionality for the Nitrokey Pro and Storage";
     longDescription  = ''
diff --git a/pkgs/tools/security/nitrokey-app/udev-rules.nix b/pkgs/tools/security/nitrokey-app/udev-rules.nix
index 33d2dd1c8fa..a89fa723826 100644
--- a/pkgs/tools/security/nitrokey-app/udev-rules.nix
+++ b/pkgs/tools/security/nitrokey-app/udev-rules.nix
@@ -10,12 +10,12 @@ stdenv.mkDerivation {
   dontBuild = true;
 
   patchPhase = ''
-    substituteInPlace data/41-nitrokey.rules --replace plugdev "${group}"
+    substituteInPlace libnitrokey/data/41-nitrokey.rules --replace plugdev "${group}"
   '';
 
   installPhase = ''
     mkdir -p $out/etc/udev/rules.d
-    cp data/41-nitrokey.rules $out/etc/udev/rules.d
+    cp libnitrokey/data/41-nitrokey.rules $out/etc/udev/rules.d
   '';
 
   meta = {
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index af43c4ec8a4..02352e0ff05 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21879,7 +21879,7 @@ with pkgs;
 
   xrq = callPackage ../applications/misc/xrq { };
 
-  nitrokey-app = callPackage ../tools/security/nitrokey-app { };
+  nitrokey-app = libsForQt5.callPackage ../tools/security/nitrokey-app { };
   nitrokey-udev-rules = callPackage ../tools/security/nitrokey-app/udev-rules.nix { };
 
   fpm2 = callPackage ../tools/security/fpm2 { };

From ddf898006edddea33d09d0d009764d1dfe96a3da Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 21:21:09 +0200
Subject: [PATCH 111/139] kea: 1.3.0 -> 1.4.0

---
 pkgs/tools/networking/kea/default.nix           |  8 ++++----
 pkgs/tools/networking/kea/dont-create-var.patch | 14 ++++++--------
 2 files changed, 10 insertions(+), 12 deletions(-)

diff --git a/pkgs/tools/networking/kea/default.nix b/pkgs/tools/networking/kea/default.nix
index 67428664556..f35ceeae864 100644
--- a/pkgs/tools/networking/kea/default.nix
+++ b/pkgs/tools/networking/kea/default.nix
@@ -4,11 +4,11 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "kea";
-  version = "1.3.0";
+  version = "1.4.0";
 
   src = fetchurl {
     url = "https://ftp.isc.org/isc/${pname}/${version}/${name}.tar.gz";
-    sha256 = "14f32lsdd1824cx9a4l4pfbhq1d4jik6l6hxd911ihi64nzwvpvf";
+    sha256 = "0a0inchisrjry59z14w4ha210q2ffl31gjbhp5dgrbap6swyry60";
   };
 
   patches = [ ./dont-create-var.patch ];
@@ -20,8 +20,8 @@ stdenv.mkDerivation rec {
 
   configureFlags = [
     "--localstatedir=/var"
-    "--with-dhcp-pgsql=${postgresql}/bin/pg_config"
-    "--with-dhcp-mysql=${mysql.connector-c}/bin/mysql_config"
+    "--with-pgsql=${postgresql}/bin/pg_config"
+    "--with-mysql=${mysql.connector-c}/bin/mysql_config"
   ];
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
diff --git a/pkgs/tools/networking/kea/dont-create-var.patch b/pkgs/tools/networking/kea/dont-create-var.patch
index 595942673c6..385113d160f 100644
--- a/pkgs/tools/networking/kea/dont-create-var.patch
+++ b/pkgs/tools/networking/kea/dont-create-var.patch
@@ -1,8 +1,8 @@
 diff --git a/Makefile.am b/Makefile.am
-index 897be34..b146729 100644
+index 2c0733c..974bb5e 100644
 --- a/Makefile.am
 +++ b/Makefile.am
-@@ -103,11 +103,6 @@ cppcheck:
+@@ -135,11 +135,6 @@ cppcheck:
  		--template '{file}:{line}: check_fail: {message} ({severity},{id})' \
  		src
  
@@ -15,14 +15,12 @@ index 897be34..b146729 100644
  EXTRA_DIST += tools/mk_cfgrpt.sh
  
 diff --git a/src/lib/dhcpsrv/Makefile.am b/src/lib/dhcpsrv/Makefile.am
-index 066b410..16d3135 100755
+index 564f623..7cea9f2 100644
 --- a/src/lib/dhcpsrv/Makefile.am
 +++ b/src/lib/dhcpsrv/Makefile.am
-@@ -210,7 +210,3 @@ EXTRA_DIST += database_backends.dox libdhcpsrv.dox
- # Specification file
- EXTRA_DIST += logging.spec
+@@ -352,5 +352,3 @@ libkea_dhcpsrv_parsers_include_HEADERS = \
+ 	parsers/simple_parser6.h
+ 
  
 -install-data-local:
 -	$(mkinstalldirs) $(DESTDIR)$(dhcp_data_dir)
--
--

From 0b2b4b8c4e729535a61db56468809c5c2d3d175c Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 21:30:59 +0200
Subject: [PATCH 112/139] charybdis: 3.5.5 -> 4.1

---
 pkgs/servers/irc/charybdis/default.nix         | 18 ++++++++++--------
 pkgs/servers/irc/charybdis/remove-setenv.patch | 12 ------------
 2 files changed, 10 insertions(+), 20 deletions(-)
 delete mode 100644 pkgs/servers/irc/charybdis/remove-setenv.patch

diff --git a/pkgs/servers/irc/charybdis/default.nix b/pkgs/servers/irc/charybdis/default.nix
index befb4039ea0..332372830d6 100644
--- a/pkgs/servers/irc/charybdis/default.nix
+++ b/pkgs/servers/irc/charybdis/default.nix
@@ -1,28 +1,30 @@
-{ stdenv, fetchFromGitHub, bison, flex, openssl }:
+{ stdenv, fetchFromGitHub, autoreconfHook, bison, flex, openssl, gnutls }:
 
 stdenv.mkDerivation rec {
-  name = "charybdis-3.5.5";
+  name = "charybdis-4.1";
 
   src = fetchFromGitHub {
     owner = "charybdis-ircd";
     repo = "charybdis";
     rev = name;
-    sha256 = "16bl516hcj1chgzkfnpg9bf9s6zr314pqzhlz6641lgyzaw1z3w0";
+    sha256 = "1j0fjf4rdiyvakxqa97x272xra64rzjhbj8faciyb4b13pyrdsmw";
   };
 
-  patches = [
-     ./remove-setenv.patch
-  ];
+  postPatch = ''
+    substituteInPlace include/defaults.h --replace 'PKGLOCALSTATEDIR "' '"/var/lib/charybdis'
+  '';
+
+  autoreconfPhase = "sh autogen.sh";
 
   configureFlags = [
     "--enable-epoll"
     "--enable-ipv6"
     "--enable-openssl=${openssl.dev}"
     "--with-program-prefix=charybdis-"
-    "--sysconfdir=/etc/charybdis"
   ];
 
-  buildInputs = [ bison flex openssl ];
+  nativeBuildInputs = [ autoreconfHook bison flex ];
+  buildInputs = [ openssl gnutls ];
 
   meta = with stdenv.lib; {
     description = "IRCv3 server designed to be highly scalable";
diff --git a/pkgs/servers/irc/charybdis/remove-setenv.patch b/pkgs/servers/irc/charybdis/remove-setenv.patch
deleted file mode 100644
index c53c1ff294e..00000000000
--- a/pkgs/servers/irc/charybdis/remove-setenv.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/src/bandbi.c b/src/bandbi.c
-index 03dd907..3698e85 100644
---- a/src/bandbi.c
-+++ b/src/bandbi.c
-@@ -82,7 +82,6 @@ start_bandb(void)
- 	const char *suffix = "";
- #endif
- 
--	rb_setenv("BANDB_DBPATH", PKGLOCALSTATEDIR "/ban.db", 1);
- 	if(bandb_path == NULL)
- 	{
- 		rb_snprintf(fullpath, sizeof(fullpath), "%s/bandb%s", PKGLIBEXECDIR, suffix);

From c798c33de23fdad0a5ca783a63d349cbf7381640 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 15 Jul 2018 19:12:14 +0200
Subject: [PATCH 113/139] =?UTF-8?q?flatpak:=200.99.2=20=E2=86=92=200.99.3?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/development/libraries/flatpak/default.nix     |  4 ++--
 .../libraries/flatpak/fix-test-paths.patch         | 14 +++++++-------
 2 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/libraries/flatpak/default.nix b/pkgs/development/libraries/flatpak/default.nix
index 9a7acc287cc..a229beb5ccb 100644
--- a/pkgs/development/libraries/flatpak/default.nix
+++ b/pkgs/development/libraries/flatpak/default.nix
@@ -4,7 +4,7 @@
 , libsoup, lzma, ostree, polkit, python3, systemd, xlibs, valgrind, glib_networking, makeWrapper, gnome3 }:
 
 let
-  version = "0.99.2";
+  version = "0.99.3";
   desktop_schemas = gnome3.gsettings_desktop_schemas;
 in stdenv.mkDerivation rec {
   name = "flatpak-${version}";
@@ -13,7 +13,7 @@ in stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://github.com/flatpak/flatpak/releases/download/${version}/${name}.tar.xz";
-    sha256 = "1cc82nxd290m4ljkd1phllwb3hkhz41h4ncfdrmhbg3gk47zgpyw";
+    sha256 = "0wd6ix1qyz8wmjkfrmr6j99gwywqs7ak1ilsn1ljp72g2z449ayk";
   };
 
   patches = [
diff --git a/pkgs/development/libraries/flatpak/fix-test-paths.patch b/pkgs/development/libraries/flatpak/fix-test-paths.patch
index 0c2b7da79eb..3f4bc56721e 100644
--- a/pkgs/development/libraries/flatpak/fix-test-paths.patch
+++ b/pkgs/development/libraries/flatpak/fix-test-paths.patch
@@ -1,6 +1,6 @@
 --- a/tests/libtest.sh
 +++ b/tests/libtest.sh
-@@ -324,7 +324,7 @@
+@@ -315,7 +315,7 @@
          # running installed-tests: assume we know what we're doing
          :
      elif ! "$FLATPAK_BWRAP" --unshare-ipc --unshare-net --unshare-pid \
@@ -9,7 +9,7 @@
          sed -e 's/^/# /' < bwrap-result
          echo "1..0 # SKIP Cannot run bwrap"
          exit 0
-@@ -332,7 +332,7 @@
+@@ -323,7 +323,7 @@
  }
  
  skip_without_python2 () {
@@ -18,7 +18,7 @@
          echo "1..0 # SKIP this test requires /usr/bin/python2 (2.7) support"
          exit 0
      fi
-@@ -352,12 +352,12 @@
+@@ -335,12 +335,12 @@
  export DBUS_SESSION_BUS_ADDRESS="$(cat dbus-session-bus-address)"
  DBUS_SESSION_BUS_PID="$(cat dbus-session-bus-pid)"
  
@@ -135,12 +135,12 @@
      collection_args=--collection-id=${COLLECTION_ID}
 --- a/tests/testlibrary.c
 +++ b/tests/testlibrary.c
-@@ -610,7 +610,7 @@
+@@ -584,7 +584,7 @@
      {
        gint exit_code = 0;
-       char *argv[] = { (char *)bwrap, "--unshare-ipc", "--unshare-net",
--          "--unshare-pid", "--ro-bind", "/", "/", "/bin/true", NULL };
-+          "--unshare-pid", "--ro-bind", "/", "/", "@coreutils@/bin/true", NULL };
+       char *argv[] = { (char *) bwrap, "--unshare-ipc", "--unshare-net",
+-                       "--unshare-pid", "--ro-bind", "/", "/", "/bin/true", NULL };
++                       "--unshare-pid", "--ro-bind", "/", "/", "@coreutils@/bin/true", NULL };
        g_autofree char *argv_str = g_strjoinv (" ", argv);
        g_test_message ("Spawning %s", argv_str);
        g_spawn_sync (NULL, argv, NULL, G_SPAWN_SEARCH_PATH, NULL, NULL, NULL, NULL, &exit_code, &error);

From 5b1f6b59596fd48ec0b366d8ad6f9a27bdd8449c Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 15 Jul 2018 19:20:20 +0200
Subject: [PATCH 114/139] nixos/flatpak: slim down test enviroment a bit

---
 nixos/tests/flatpak.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/nixos/tests/flatpak.nix b/nixos/tests/flatpak.nix
index d1c7cf84314..9a5bdf07021 100644
--- a/nixos/tests/flatpak.nix
+++ b/nixos/tests/flatpak.nix
@@ -10,6 +10,7 @@ import ./make-test.nix ({ pkgs, ... }:
   machine = { config, pkgs, ... }: {
     imports = [ ./common/x11.nix ];
     services.xserver.desktopManager.gnome3.enable = true; # TODO: figure out minimal environment where the tests work
+    environment.gnome3.excludePackages = pkgs.gnome3.optionalPackages;
     services.flatpak.enable = true;
     environment.systemPackages = with pkgs; [ gnupg gnome-desktop-testing ostree python2 ];
     virtualisation.memorySize = 2047;

From 11653f8e6b6b1c1b5fb99cf4ef99e4f31c2dec04 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 23:29:57 +0300
Subject: [PATCH 115/139] nginxModules.sla: init at 7778f01

---
 pkgs/servers/http/nginx/modules.nix | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 869551ef03a..0ef79aed5a9 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -120,6 +120,15 @@
     };
   };
 
+  sla = {
+    src = fetchFromGitHub {
+      owner = "goldenclone";
+      repo = "nginx-sla";
+      rev = "7778f0125974befbc83751d0e1cadb2dcea57601";
+      sha256 = "1x5hm6r0dkm02ffny8kjd7mmq8przyd9amg2qvy5700x6lb63pbs";
+    };
+  }; 
+
   fluentd = {
     src = fetchFromGitHub {
       owner = "fluent";

From d9d74223e21733c25879edeb0cca1aa609f9d51f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sun, 15 Jul 2018 17:06:49 -0400
Subject: [PATCH 116/139] lmms: 1.2.0-rc4 -> 1.2.0-rc6

This fixes compilation
---
 pkgs/applications/audio/lmms/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/audio/lmms/default.nix b/pkgs/applications/audio/lmms/default.nix
index 25d7f2ed015..0ff864c0048 100644
--- a/pkgs/applications/audio/lmms/default.nix
+++ b/pkgs/applications/audio/lmms/default.nix
@@ -1,17 +1,18 @@
 { stdenv, fetchFromGitHub, cmake, pkgconfig, alsaLib ? null, fftwFloat, fltk13
 , fluidsynth ? null, lame ? null, libgig ? null, libjack2 ? null, libpulseaudio ? null
 , libsamplerate, libsoundio ? null, libsndfile, libvorbis ? null, portaudio ? null
-, qtbase, qttools, SDL ? null }:
+, qtbase, qtx11extras, qttools, SDL ? null }:
 
 stdenv.mkDerivation rec {
   name = "lmms-${version}";
-  version = "1.2.0-rc4";
+  version = "1.2.0-rc6";
 
   src = fetchFromGitHub {
     owner = "LMMS";
     repo = "lmms";
     rev = "v${version}";
-    sha256 = "1n3py18zqbvfnkdiz4wc6z60xaajpkd3kn1wxmby5dmc4vccvjj5";
+    sha256 = "1pqir5srfrknfd8nmbz565ymq18ffw8d8k9pbmzggaxvlcr12b25";
+    fetchSubmodules = true;
   };
 
   nativeBuildInputs = [ cmake qttools pkgconfig ];
@@ -31,6 +32,7 @@ stdenv.mkDerivation rec {
     libvorbis
     portaudio
     qtbase
+    qtx11extras
     SDL # TODO: switch to SDL2 in the next version
   ];
 

From a16eee878f2f2e2a62dc3bedeedc2b57f60961c8 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 21:57:10 +0300
Subject: [PATCH 117/139] nginxModules.ipscrub: update to v1.0.1

---
 pkgs/servers/http/nginx/modules.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 1919cfddf62..84f97113fd1 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -19,9 +19,10 @@
     src = fetchFromGitHub {
       owner = "masonicboom";
       repo = "ipscrub";
-      rev = "99230f66d5afe1f929cf4ed217901acb6206f620";
-      sha256 = "0mfrwkg4srql38w713pg6qxi0h4hgy8inkvgc9cm80bwlv2ng9s1";
+      rev = "v1.0.1";
+      sha256 = "0qcx15c8wbsmyz2hkmyy5yd7qn1n84kx9amaxnfxkpqi05vzm1zz";
     } + "/ipscrub";
+    inputs = [ pkgs.libbsd ];
   };
 
   rtmp ={

From 8584845aa10d19f3417120f6a78759565ec3f6db Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 22:00:36 +0300
Subject: [PATCH 118/139] nginxModules.moreheaders: update to v0.33

---
 pkgs/servers/http/nginx/modules.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 84f97113fd1..2283205b3f2 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -48,8 +48,8 @@
     src = fetchFromGitHub {
       owner = "openresty";
       repo = "headers-more-nginx-module";
-      rev = "v0.26";
-      sha256 = "0zhr3ai4xf5yghxvlbrwv8n06fgx33f1n1d4a6gmsczdfjzf8g6g";
+      rev = "v0.33";
+      sha256 = "1cgdjylrdd69vlkwwmn018hrglzjwd83nqva1hrapgcfw12f7j53";
     };
   };
 

From ea52907348dd8ef0aea472135deb0e1eae7ffaea Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 22:06:30 +0300
Subject: [PATCH 119/139] nginxModules.lua: update to v0.10.13

---
 pkgs/servers/http/nginx/modules.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 2283205b3f2..d126bf09e0a 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -93,8 +93,8 @@
     src = fetchFromGitHub {
       owner = "openresty";
       repo = "lua-nginx-module";
-      rev = "v0.10.10";
-      sha256 = "1dlqnlkpn3pnhk2m09jdx3iw3m6xk31pw2m5xrpcmqk3bll68mw6";
+      rev = "v0.10.13";
+      sha256 = "19mpc76lfhyyvkfs2n08b4rc9cf2v7rm8fskkf60hsdcf6qna822";
     };
     inputs = [ pkgs.luajit ];
     preConfigure = ''

From eff0def7dc9d7de030fbed6665d33c4b9e824a03 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 22:10:48 +0300
Subject: [PATCH 120/139] nginxModules.set-misc: update to v0.32

---
 pkgs/servers/http/nginx/modules.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index d126bf09e0a..2749831f6c3 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -107,8 +107,8 @@
     src = fetchFromGitHub {
       owner = "openresty";
       repo = "set-misc-nginx-module";
-      rev = "v0.28";
-      sha256 = "1vixj60q0liri7k5ax85grj7q9vvgybkx421bwphbhai5xrjip96";
+      rev = "v0.32";
+      sha256 = "048a6jwinbjgxiprjj9ml3fdp0mhkx89g6ggams57fsx9m5vaxax";
     };
   };
 

From 04eb0731fb7eea305d516c3f453b99f2a0ed3243 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 22:15:43 +0300
Subject: [PATCH 121/139] nginxModules.pam: update to v1.5.1

---
 pkgs/servers/http/nginx/modules.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 2749831f6c3..ffece820bd0 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -125,8 +125,8 @@
     src = fetchFromGitHub {
       owner = "stogh";
       repo = "ngx_http_auth_pam_module";
-      rev = "v1.4";
-      sha256 = "068zwyrc1dji55rlaj2kx6n0v2n5rpj7nz26ipvz26ida712md35";
+      rev = "v1.5.1";
+      sha256 = "031q006bcv10dzxi3mzamqiyg14p48v0bzd5mrwz073pbf0ba2fl";
     };
     inputs = [ pkgs.pam ];
   };

From c96d49733a29dd3bd59b2809ece84ebaf210d017 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 22:19:32 +0300
Subject: [PATCH 122/139] nginxModules.statsd: update to rev b970e40

---
 pkgs/servers/http/nginx/modules.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index ffece820bd0..1301892af75 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -135,8 +135,8 @@
     src = fetchFromGitHub {
       owner = "apcera";
       repo = "nginx-statsd";
-      rev = "2147d61dc31dd4865604be92349e6192a905d21a";
-      sha256 = "19s3kwjgf51jkwknh7cfi82p6kifl8rl146wxc3ijds12776ilsv";
+      rev = "b970e40467a624ba710c9a5106879a0554413d15";
+      sha256 = "1x8j4i1i2ahrr7qvz03vkldgdjdxi6mx75mzkfizfcc8smr4salr";
     };
   };
 

From 75b2940145a9f5afab091667c0fdec7a0facd5a7 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 22:24:30 +0300
Subject: [PATCH 123/139] nginxModules.upstream-check: update to rev 9aecf15

---
 pkgs/servers/http/nginx/modules.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 1301892af75..edf6ab6a339 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -144,8 +144,8 @@
     src = fetchFromGitHub {
       owner = "yaoweibin";
       repo = "nginx_upstream_check_module";
-      rev = "10782eaff51872a8f44e65eed89bbe286004bcb1";
-      sha256 = "0h98a8kiw2qkqfavysm1v16kf4cs4h39j583wapif4p0qx3bbm89";
+      rev = "9aecf15ec379fe98f62355c57b60c0bc83296f04";
+      sha256 = "1cjisxw1wykll683nw09k0i1nvzslp4dr59x58cvarpk43paim2y";
     };
   };
 

From 3a5d104a33966ccb568c72445921cb81a8a92d99 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 22:37:23 +0300
Subject: [PATCH 124/139] nginxModules.develkit: update to v0.3.1rc1

---
 pkgs/servers/http/nginx/modules.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index edf6ab6a339..09c1b6bbd27 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -84,8 +84,8 @@
     src = fetchFromGitHub {
       owner = "simpl";
       repo = "ngx_devel_kit";
-      rev = "v0.3.0";
-      sha256 = "1br1997zqsjcb1aqm6h6xmi5yx7akxk0qvk8wxc0fnvmyhgzxgx0";
+      rev = "v0.3.1rc1";
+      sha256 = "00vqvpx67qra2hr85hkvj1dha4h7x7v9sblw7w1df11nq1gzsdbb";
     };
   };
 

From b7813f37fc182a1e389445ab76b863f45532f9e6 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 21:46:27 +0200
Subject: [PATCH 125/139] subfinder: remove from its own deps

---
 pkgs/tools/networking/subfinder/deps.nix | 11 +----------
 1 file changed, 1 insertion(+), 10 deletions(-)

diff --git a/pkgs/tools/networking/subfinder/deps.nix b/pkgs/tools/networking/subfinder/deps.nix
index 8d8a1a571d6..34095c81428 100644
--- a/pkgs/tools/networking/subfinder/deps.nix
+++ b/pkgs/tools/networking/subfinder/deps.nix
@@ -18,15 +18,6 @@
       sha256 = "1vmsnv6r799z5lz5g9l2dh065m9003yfjb18w8n6c053hp8jvrfm";
     };
   }
-  {
-    goPackagePath  = "github.com/subfinder/subfinder";
-    fetch = {
-      type = "git";
-      url = "https://github.com/subfinder/subfinder";
-      rev =  "26596affed961c535676395f443acc5af95ac9e6";
-      sha256 = "0m842jyrwlg4kaja1m3kca07jf20fxva0frg66b13zpsm8hdp10q";
-    };
-  }
   {
     goPackagePath  = "github.com/subfinder/urlx";
     fetch = {
@@ -54,4 +45,4 @@
       sha256 = "00dmz9a5d3myyb0256b33vf1bk8wv1khhh88kcvbmqsfd6x1n6p5";
     };
   }
-]
\ No newline at end of file
+]

From 4fbc423b77d693fe4d215f3ccd05c2097d5a740a Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 21:55:52 +0200
Subject: [PATCH 126/139] caddy: 0.10.12 -> 0.11.0

---
 pkgs/servers/caddy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/caddy/default.nix b/pkgs/servers/caddy/default.nix
index d89e59d662e..548d01c249d 100644
--- a/pkgs/servers/caddy/default.nix
+++ b/pkgs/servers/caddy/default.nix
@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "caddy-${version}";
-  version = "0.10.12";
+  version = "0.11.0";
 
   goPackagePath = "github.com/mholt/caddy";
 
@@ -12,7 +12,7 @@ buildGoPackage rec {
     owner = "mholt";
     repo = "caddy";
     rev = "v${version}";
-    sha256 = "0vmgswln72qqay73z39qn135sl5k71zlybr2jdrcjlmp4i7hrf88";
+    sha256 = "0lvzvsblw4zpdfigaad4y577wfh7skx1ln5xhiz0k7vaqfj96ijy";
   };
 
   buildFlagsArray = ''

From 86e27e29c4c223f062f5c0ca0ebe3e3036f4b45f Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Sun, 15 Jul 2018 22:02:26 +0200
Subject: [PATCH 127/139] clamav: 0.99.4 -> 0.100.1

---
 pkgs/tools/security/clamav/default.nix | 13 +++++++++----
 1 file changed, 9 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/security/clamav/default.nix b/pkgs/tools/security/clamav/default.nix
index c3aa92bf4b0..79644d35774 100644
--- a/pkgs/tools/security/clamav/default.nix
+++ b/pkgs/tools/security/clamav/default.nix
@@ -1,14 +1,15 @@
 { stdenv, fetchurl, fetchpatch, pkgconfig
-, zlib, bzip2, libiconv, libxml2, openssl, ncurses, curl, libmilter, pcre
+, zlib, bzip2, libiconv, libxml2, openssl, ncurses, curl, libmilter, pcre2
+, libmspack, systemd
 }:
 
 stdenv.mkDerivation rec {
   name = "clamav-${version}";
-  version = "0.99.4";
+  version = "0.100.1";
 
   src = fetchurl {
     url = "https://www.clamav.net/downloads/production/${name}.tar.gz";
-    sha256 = "0q94iwi729id9pyc72w6zlllbaz37qvpi6gc51g2x3fy7ckw6anp";
+    sha256 = "17x5b2gh84b167h6ip9hw05w809p009yx13i4gkps92ja5jjdq44";
   };
 
   # don't install sample config files into the absolute sysconfdir folder
@@ -18,16 +19,20 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [
-    zlib bzip2 libxml2 openssl ncurses curl libiconv libmilter pcre
+    zlib bzip2 libxml2 openssl ncurses curl libiconv libmilter pcre2 libmspack
+    systemd
   ];
 
   configureFlags = [
+    "--libdir=$(out)/lib"
     "--sysconfdir=/etc/clamav"
+    "--with-systemdsystemunitdir=$(out)/lib/systemd"
     "--disable-llvm" # enabling breaks the build at the moment
     "--with-zlib=${zlib.dev}"
     "--with-xml=${libxml2.dev}"
     "--with-openssl=${openssl.dev}"
     "--with-libcurl=${curl.dev}"
+    "--with-system-libmspack"
     "--enable-milter"
   ];
 

From 4626d0b2556a5cab8f6ff7fd7cd9966a7ab5a36b Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sun, 15 Jul 2018 13:42:44 -0500
Subject: [PATCH 128/139] gnomecast: init at 1.4.0

also pycaption, required dep.
---
 pkgs/applications/video/gnomecast/default.nix | 28 +++++++++++++
 .../python-modules/pycaption/default.nix      | 41 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 pkgs/top-level/python-packages.nix            |  1 +
 4 files changed, 72 insertions(+)
 create mode 100644 pkgs/applications/video/gnomecast/default.nix
 create mode 100644 pkgs/development/python-modules/pycaption/default.nix

diff --git a/pkgs/applications/video/gnomecast/default.nix b/pkgs/applications/video/gnomecast/default.nix
new file mode 100644
index 00000000000..a2faaf39f08
--- /dev/null
+++ b/pkgs/applications/video/gnomecast/default.nix
@@ -0,0 +1,28 @@
+{ lib, python3Packages, gtk3, gobjectIntrospection, ffmpeg, wrapGAppsHook }:
+
+with python3Packages;
+buildPythonApplication rec {
+  pname = "gnomecast";
+  version = "1.4.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "17hxqpisw6j6caw6bzp0wd0p3idqy6a78wwwk8kms6hpxasirwyk";
+  };
+
+  nativeBuildInputs = [ wrapGAppsHook ];
+  propagatedBuildInputs = [
+    PyChromecast bottle pycaption paste html5lib pygobject3 dbus-python
+    gtk3 gobjectIntrospection
+  ];
+
+  preFixup = ''
+    gappsWrapperArgs+=(--prefix PATH : ${lib.makeBinPath [ ffmpeg ]})
+  '';
+
+  meta = with lib; {
+    description = "A native Linux GUI for Chromecasting local files";
+    homepage = https://github.com/keredson/gnomecast;
+    license = with licenses; [ gpl3 ];
+  };
+}
diff --git a/pkgs/development/python-modules/pycaption/default.nix b/pkgs/development/python-modules/pycaption/default.nix
new file mode 100644
index 00000000000..845630e514f
--- /dev/null
+++ b/pkgs/development/python-modules/pycaption/default.nix
@@ -0,0 +1,41 @@
+{ lib, fetchpatch
+, buildPythonPackage, fetchPypi, isPy3k, pythonOlder
+, beautifulsoup4, lxml, cssutils, future, enum34, six
+}:
+
+buildPythonPackage rec {
+  pname = "pycaption";
+  version = "1.0.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0f2hx9ky65c4niws3x5yx59yi8mqqrw9b2cghd220g4hj9yl800h";
+  };
+
+  disabled = !isPy3k;
+
+  prePatch = ''
+    substituteInPlace setup.py \
+      --replace 'beautifulsoup4>=4.2.1,<4.5.0' \
+                'beautifulsoup4>=4.2.1,<=4.6.0'
+  '';
+
+  # don't require enum34 on python >= 3.4
+  patches = [
+    (fetchpatch {
+        url = "https://github.com/pbs/pycaption/pull/161.patch";
+        sha256 = "0p58awpsqx1qc3x9zfl1gd85h1nk7204lzn4kglsgh1bka0j237j";
+    })
+  ];
+
+  propagatedBuildInputs = [ beautifulsoup4 lxml cssutils future enum34 six ];
+
+  # Tests not included in pypi (?)
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Closed caption converter";
+    homepage = https://github.com/pbs/pycaption;
+    license = with licenses; [ asl20 ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index cc216ac311c..c98815169ae 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -16490,6 +16490,8 @@ with pkgs;
 
   gmtp = callPackage ../applications/misc/gmtp {};
 
+  gnomecast = callPackage ../applications/video/gnomecast { };
+
   gnome-mpv = callPackage ../applications/video/gnome-mpv { };
 
   gollum = callPackage ../applications/misc/gollum { };
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index f04e149bac9..c7b0e838ae6 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -10376,6 +10376,7 @@ in {
     };
   };
 
+  pycaption = callPackage ../development/python-modules/pycaption { };
 
   pycdio = buildPythonPackage rec {
     name = "pycdio-2.0.0";

From 7d1076873c57e862943938677b93ad7db1b41482 Mon Sep 17 00:00:00 2001
From: Samuel Dionne-Riel <samuel@dionne-riel.com>
Date: Sun, 15 Jul 2018 19:00:51 -0400
Subject: [PATCH 129/139] dbeaver: 5.1.2 -> 5.1.3

---
 pkgs/applications/misc/dbeaver/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/dbeaver/default.nix b/pkgs/applications/misc/dbeaver/default.nix
index ed08356fdc5..d23b789780b 100644
--- a/pkgs/applications/misc/dbeaver/default.nix
+++ b/pkgs/applications/misc/dbeaver/default.nix
@@ -7,7 +7,7 @@
 
 stdenv.mkDerivation rec {
   name = "dbeaver-ce-${version}";
-  version = "5.1.2";
+  version = "5.1.3";
 
   desktopItem = makeDesktopItem {
     name = "dbeaver";
@@ -30,7 +30,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://dbeaver.io/files/${version}/dbeaver-ce-${version}-linux.gtk.x86_64.tar.gz";
-    sha256 = "1p1klrasasc440qzxsn96lcgfib5qwhl508gvwrbslvmija6m6b2";
+    sha256 = "1znkr28pfpclq2gl2prllb3hwq9v9rj5xl7xarq0hsggzfg9n071";
   };
 
   installPhase = ''

From f5831fb66ba7d9b9b84c133024af6a404d3e3915 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Mon, 16 Jul 2018 01:33:57 +0200
Subject: [PATCH 130/139] =?UTF-8?q?xneur:=200.13.0=20=E2=86=92=200.20.0?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/applications/misc/gxneur/default.nix     |  8 +--
 pkgs/applications/misc/xneur/default.nix      | 53 ++++++++-----------
 .../misc/xneur/src-for-default.nix            |  9 ----
 .../misc/xneur/src-info-for-default.nix       |  5 --
 pkgs/top-level/all-packages.nix               |  4 +-
 5 files changed, 27 insertions(+), 52 deletions(-)
 delete mode 100644 pkgs/applications/misc/xneur/src-for-default.nix
 delete mode 100644 pkgs/applications/misc/xneur/src-info-for-default.nix

diff --git a/pkgs/applications/misc/gxneur/default.nix b/pkgs/applications/misc/gxneur/default.nix
index 69c91d25755..940b0a7252f 100644
--- a/pkgs/applications/misc/gxneur/default.nix
+++ b/pkgs/applications/misc/gxneur/default.nix
@@ -1,8 +1,8 @@
-{ stdenv, fetchurl, pkgconfig, gtk2, xorg, glib, xneur_0_13, libglade, GConf, pcre }:
+{ stdenv, fetchurl, pkgconfig, gtk2, xorg, glib, xneur, libglade, GConf, pcre }:
 
 stdenv.mkDerivation {
   name = "gxneur-0.13.0";
-  
+
   src = fetchurl {
     url = https://dists.xneur.ru/release-0.13.0/tgz/gxneur-0.13.0.tar.bz2;
     sha256 = "f093428a479158247a7ff8424f0aec9af9f7b1d05b191cf30b7c534965a6839f";
@@ -10,13 +10,13 @@ stdenv.mkDerivation {
 
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [
-    xorg.libX11 glib gtk2 xorg.libXpm xorg.libXt xorg.libXext xneur_0_13
+    xorg.libX11 glib gtk2 xorg.libXpm xorg.libXt xorg.libXext xneur
     libglade GConf pcre
   ];
 
   preConfigure = ''
     sed -e 's@-Werror@@' -i configure
-    sed -e 's@"xneur"@"${xneur_0_13}/bin/xneur"@' -i src/misc.c
+    sed -e 's@"xneur"@"${xneur}/bin/xneur"@' -i src/misc.c
   '';
 
   meta = {
diff --git a/pkgs/applications/misc/xneur/default.nix b/pkgs/applications/misc/xneur/default.nix
index ff7c6a9e976..c6438a21f2c 100644
--- a/pkgs/applications/misc/xneur/default.nix
+++ b/pkgs/applications/misc/xneur/default.nix
@@ -1,44 +1,35 @@
-{ stdenv, fetchurl, pkgconfig, xorg, pcre, gstreamer, glib, libxml2
-, aspell, cairo, imlib2, xosd, libnotify, gtk2, pango, atk, enchant,
- gdk_pixbuf}:
-
-let s = import ./src-for-default.nix; in
+{ stdenv, fetchurl, pkgconfig, intltool, xorg, pcre, gst_all_1, glib
+, xosd, libnotify, enchant, wrapGAppsHook, gdk_pixbuf }:
 
 stdenv.mkDerivation rec {
-  inherit (s) version name;
+   name = "xneur-${version}";
+   version = "0.20.0";
+
   src = fetchurl {
-    inherit(s) url;
-    sha256 = s.hash;
+    url = "https://github.com/AndrewCrewKuznetsov/xneur-devel/raw/f66723feb272c68f7c22a8bf0dbcafa5e3a8a5ee/dists/0.20.0/xneur_0.20.0.orig.tar.gz";
+    sha256 = "1lg3qpi9pkx9f5xvfc8yf39wwc98f769yb7i2438vqn66kla1xpr";
   };
 
-  buildInputs =
-    [ xorg.libX11 pkgconfig pcre gstreamer glib libxml2 aspell cairo
-      xorg.libXpm imlib2 xosd xorg.libXt xorg.libXext xorg.libXi libnotify
-      gtk2 pango enchant gdk_pixbuf
-    ];
+  nativeBuildInputs = [
+    pkgconfig intltool wrapGAppsHook
+  ];
 
-  preConfigure = ''
-    sed -e 's/-Werror//' -i configure
-    sed -e 's@for aspell_dir in@for aspell_dir in ${aspell} @' -i configure
-    sed -e 's@for imlib2_dir in@for imlib2_dir in ${imlib2} @' -i configure
+  buildInputs = [
+    xorg.libX11 xorg.libXtst pcre gst_all_1.gstreamer glib
+    xosd xorg.libXext xorg.libXi libnotify
+    enchant gdk_pixbuf
+    gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good
+  ];
+
+  postPatch = ''
     sed -e 's@for xosd_dir in@for xosd_dir in ${xosd} @' -i configure
-
-    export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${gtk2.dev}/include/gtk-2.0"
-    export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${gtk2.out}/lib/gtk-2.0/include"
-    export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${cairo.dev}/include/cairo"
-    export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${pango.dev}/include/pango-1.0"
-    export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${atk.dev}/include/atk-1.0"
-    export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${gdk_pixbuf.dev}/include/gdk-pixbuf-2.0"
-    export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${gdk_pixbuf.out}/lib/gdk-pixbuf-2.0/include"
-
-    export NIX_LDFLAGS="$NIX_LDFLAGS -lnotify"
   '';
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "Utility for switching between keyboard layouts";
     homepage = https://xneur.ru;
-    license = stdenv.lib.licenses.gpl2Plus;
-    maintainers = [ stdenv.lib.maintainers.raskin ];
-    platforms = stdenv.lib.platforms.linux;
+    license = licenses.gpl2Plus;
+    maintainers = [ maintainers.raskin ];
+    platforms = platforms.linux;
   };
 }
diff --git a/pkgs/applications/misc/xneur/src-for-default.nix b/pkgs/applications/misc/xneur/src-for-default.nix
deleted file mode 100644
index a7db13bd81d..00000000000
--- a/pkgs/applications/misc/xneur/src-for-default.nix
+++ /dev/null
@@ -1,9 +0,0 @@
-rec {
-   version="0.13.0";
-   name="xneur-0.13.0";
-   hash="19z8nnfj9paf877k0nrqy6dih69l81svxymqg6llh7ndgkw20hgd";
-   url="http://dists.xneur.ru/release-${version}/tgz/xneur-${version}.tar.bz2";
-   advertisedUrl="http://dists.xneur.ru/release-0.13.0/tgz/xneur-0.13.0.tar.bz2";
-  
-  
-}
diff --git a/pkgs/applications/misc/xneur/src-info-for-default.nix b/pkgs/applications/misc/xneur/src-info-for-default.nix
deleted file mode 100644
index 0de3e83baf7..00000000000
--- a/pkgs/applications/misc/xneur/src-info-for-default.nix
+++ /dev/null
@@ -1,5 +0,0 @@
-{
-  downloadPage = "http://xneur.ru/downloads";
-  baseName = "xneur";
-  versionReferenceCreator = "$(replaceAllVersionOccurences)";
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 7e58f106d69..1dc645ff61c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19152,12 +19152,10 @@ with pkgs;
 
   xmind = callPackage ../applications/misc/xmind { };
 
-  xneur_0_13 = callPackage ../applications/misc/xneur { };
+  xneur = callPackage ../applications/misc/xneur { };
 
   xneur_0_8 = callPackage ../applications/misc/xneur/0.8.nix { };
 
-  xneur = xneur_0_13;
-
   gxneur = callPackage ../applications/misc/gxneur  {
     inherit (gnome2) libglade GConf;
   };

From c19652a60f9df1c6531ddf84928e1a3dea2db84a Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Mon, 16 Jul 2018 01:35:28 +0200
Subject: [PATCH 131/139] xneur_0_8: drop

---
 pkgs/applications/misc/xneur/0.8.nix | 29 ----------------------------
 pkgs/top-level/all-packages.nix      |  2 --
 2 files changed, 31 deletions(-)
 delete mode 100644 pkgs/applications/misc/xneur/0.8.nix

diff --git a/pkgs/applications/misc/xneur/0.8.nix b/pkgs/applications/misc/xneur/0.8.nix
deleted file mode 100644
index 897c861e40a..00000000000
--- a/pkgs/applications/misc/xneur/0.8.nix
+++ /dev/null
@@ -1,29 +0,0 @@
-{ stdenv, fetchurl, pkgconfig, pcre, gstreamer, glib, libxml2, aspell
-, imlib2, xorg, xosd }:
-
-stdenv.mkDerivation {
-  name = "xneur-0.8.0";
-  
-  src = fetchurl {
-    url = https://dists.xneur.ru/release-0.8.0/tgz/xneur-0.8.0.tar.bz2;
-    sha256 = "1f05bm4vqdrlm8rxwgqv89k5lhc236xg841aw4snw514g0hi2sl8";
-  };
-
-  buildInputs =
-    [ xorg.libX11 pkgconfig pcre gstreamer glib libxml2 aspell
-      xorg.libXpm imlib2 xosd xorg.libXt xorg.libXext
-    ];
-
-  preConfigure = ''
-    sed -e 's/-Werror//' -i configure
-    sed -e 's@for aspell_dir in@for aspell_dir in ${aspell} @' -i configure
-    sed -e 's@for imlib2_dir in@for imlib2_dir in ${imlib2} @' -i configure
-    sed -e 's@for xosd_dir in@for xosd_dir in ${xosd} @' -i configure
-  '';
-
-  meta = {
-    description = "Utility for switching between keyboard layouts";
-    platforms = stdenv.lib.platforms.linux;
-  };
-
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 1dc645ff61c..e42ca369cf8 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19154,8 +19154,6 @@ with pkgs;
 
   xneur = callPackage ../applications/misc/xneur { };
 
-  xneur_0_8 = callPackage ../applications/misc/xneur/0.8.nix { };
-
   gxneur = callPackage ../applications/misc/gxneur  {
     inherit (gnome2) libglade GConf;
   };

From f4e510302f9282ea66afe55ae6167fd6adf37e73 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Mon, 16 Jul 2018 01:44:32 +0200
Subject: [PATCH 132/139] =?UTF-8?q?gxneur:=200.13.0=20=E2=86=92=200.20.0?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/applications/misc/gxneur/default.nix | 17 ++++++-----------
 1 file changed, 6 insertions(+), 11 deletions(-)

diff --git a/pkgs/applications/misc/gxneur/default.nix b/pkgs/applications/misc/gxneur/default.nix
index 940b0a7252f..ec041902b25 100644
--- a/pkgs/applications/misc/gxneur/default.nix
+++ b/pkgs/applications/misc/gxneur/default.nix
@@ -1,24 +1,19 @@
-{ stdenv, fetchurl, pkgconfig, gtk2, xorg, glib, xneur, libglade, GConf, pcre }:
+{ stdenv, fetchurl, pkgconfig, intltool, gtk2, xorg, glib, xneur, libglade, GConf, libappindicator-gtk2, pcre }:
 
 stdenv.mkDerivation {
-  name = "gxneur-0.13.0";
+  name = "gxneur-0.20.0";
 
   src = fetchurl {
-    url = https://dists.xneur.ru/release-0.13.0/tgz/gxneur-0.13.0.tar.bz2;
-    sha256 = "f093428a479158247a7ff8424f0aec9af9f7b1d05b191cf30b7c534965a6839f";
+    url = https://github.com/AndrewCrewKuznetsov/xneur-devel/raw/f66723feb272c68f7c22a8bf0dbcafa5e3a8a5ee/dists/0.20.0/gxneur_0.20.0.orig.tar.gz;
+    sha256 = "0avmhdcj0hpr55fc0iih8fjykmdhn34c8mwdnqvl8jh4nhxxchxr";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ pkgconfig intltool ];
   buildInputs = [
     xorg.libX11 glib gtk2 xorg.libXpm xorg.libXt xorg.libXext xneur
-    libglade GConf pcre
+    libglade GConf pcre libappindicator-gtk2
   ];
 
-  preConfigure = ''
-    sed -e 's@-Werror@@' -i configure
-    sed -e 's@"xneur"@"${xneur}/bin/xneur"@' -i src/misc.c
-  '';
-
   meta = {
     description = "GUI for XNEUR keyboard layout switcher";
     platforms = stdenv.lib.platforms.linux;

From f1fbf818c4a94c67fcdb171ba00f1fef4a0aef2a Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Mon, 16 Jul 2018 01:06:43 +0200
Subject: [PATCH 133/139] autoPatchelfHook: Run after patchelf's setup hook

So far the runtimeDependencies variable has been rather useless unless
you also set dontPatchelf, because the patchelf setup hook ran *after*
the autoPatchelfHook and thus stripped off the additional RPATHs added
using runtimeDependencies.

I did this by moving the autoPatchelfHook to be run in postFixup instead
of fixupOutput, however I needed to replicate the for loop that runs the
hook on all outputs.

Until we have a way to influence order of execution for hooks I've
marked this with an XXX so that we can use fixupOutput again.

Tested this against all packages that use autoPatchelfHook using the
following and checking whether the output contains any errors concerning
shared libraries:

nix-build -E 'with import ./. { config.allowUnfree = true; };
  runCommand "test-executables" {
    drvs = [
      masterpdfeditor franz zoom-us anydesk teamviewer maxx
      oracle-instantclient cups-kyodialog3 virtlyst powershell
    ];
  } "for i in $drvs; do for b in $i/bin/*; do \"$b\" || :; done; done"
'

Signed-off-by: aszlig <aszlig@nix.build>
Fixes: https://github.com/NixOS/nixpkgs/issues/43082
Cc: @Ericson2314
---
 pkgs/build-support/setup-hooks/auto-patchelf.sh | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

diff --git a/pkgs/build-support/setup-hooks/auto-patchelf.sh b/pkgs/build-support/setup-hooks/auto-patchelf.sh
index f40cdcf4cad..32fdb1000e2 100644
--- a/pkgs/build-support/setup-hooks/auto-patchelf.sh
+++ b/pkgs/build-support/setup-hooks/auto-patchelf.sh
@@ -172,4 +172,14 @@ autoPatchelf() {
     done
 }
 
-fixupOutputHooks+=(autoPatchelf)
+# XXX: This should ultimately use fixupOutputHooks but we currently don't have
+# a way to enforce the order. If we have $runtimeDependencies set, the setup
+# hook of patchelf is going to ruin everything and strip out those additional
+# RPATHs.
+#
+# So what we do here is basically run in postFixup and emulate the same
+# behaviour as fixupOutputHooks because the setup hook for patchelf is run in
+# fixupOutput and the postFixup hook runs later.
+postFixupHooks+=(
+    'for output in $outputs; do prefix="${!output}" autoPatchelf; done'
+)

From e76f382c756eefdcbf16151f427589dcc0a13d2d Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Mon, 16 Jul 2018 01:36:57 +0300
Subject: [PATCH 134/139] nginxModules: sorting of modules alphabetically

---
 pkgs/servers/http/nginx/modules.nix | 243 ++++++++++++++--------------
 1 file changed, 121 insertions(+), 122 deletions(-)

diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index a2b57a594b0..1f6fcc31943 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -15,6 +15,34 @@
     inputs = [ pkgs.brotli ];
   };
 
+  dav = {
+    src = fetchFromGitHub {
+      owner = "arut";
+      repo = "nginx-dav-ext-module";
+      rev = "v0.1.0";
+      sha256 = "1ifahd69vz715g3zim618jbmxb7kcmzykc696grskxm0svpy294k";
+    };
+    inputs = [ pkgs.expat ];
+  };
+
+  develkit = {
+    src = fetchFromGitHub {
+      owner = "simpl";
+      repo = "ngx_devel_kit";
+      rev = "v0.3.1rc1";
+      sha256 = "00vqvpx67qra2hr85hkvj1dha4h7x7v9sblw7w1df11nq1gzsdbb";
+    };
+  };
+
+  echo = {
+    src = fetchFromGitHub {
+      owner = "openresty";
+      repo = "echo-nginx-module";
+      rev = "v0.61";
+      sha256 = "0brjhhphi94ms4gia7za0mfx0png4jbhvq6j0nzjwp537iyiy23k";
+    };
+  };
+
   fancyindex = {
     src = fetchFromGitHub {
       owner = "aperezdc";
@@ -24,6 +52,24 @@
     };
   };
 
+  fastcgi-cache-purge = {
+    src = fetchFromGitHub {
+      owner  = "FRiCKLE";
+      repo   = "ngx_cache_purge";
+      rev    = "2.3";
+      sha256 = "0ib2jrbjwrhvmihhnzkp4w87fxssbbmmmj6lfdwpm6ni8p9g60dw";
+    };
+  };
+
+  fluentd = {
+    src = fetchFromGitHub {
+      owner = "fluent";
+      repo = "nginx-fluentd-module";
+      rev = "8af234043059c857be27879bc547c141eafd5c13";
+      sha256 = "1ycb5zd9sw60ra53jpak1m73zwrjikwhrrh9q6266h1mlyns7zxm";
+    };
+  };
+
   ipscrub = {
     src = fetchFromGitHub {
       owner = "masonicboom";
@@ -34,32 +80,18 @@
     inputs = [ pkgs.libbsd ];
   };
 
-  rtmp ={
-    src = fetchFromGitHub {
-      owner = "arut";
-      repo = "nginx-rtmp-module";
-      rev = "v1.2.1";
-      sha256 = "0na1aam176irz6w148hnvamqy1ilbn4abhdzkva0yrm35a3ksbzn";
-    };
-  };
-
-  dav = {
-    src = fetchFromGitHub {
-      owner = "arut";
-      repo = "nginx-dav-ext-module";
-      rev = "v0.1.0";
-      sha256 = "1ifahd69vz715g3zim618jbmxb7kcmzykc696grskxm0svpy294k";
-    };
-    inputs = [ pkgs.expat ];
-  };
-
-  moreheaders = {
+  lua = {
     src = fetchFromGitHub {
       owner = "openresty";
-      repo = "headers-more-nginx-module";
-      rev = "v0.33";
-      sha256 = "1cgdjylrdd69vlkwwmn018hrglzjwd83nqva1hrapgcfw12f7j53";
+      repo = "lua-nginx-module";
+      rev = "v0.10.13";
+      sha256 = "19mpc76lfhyyvkfs2n08b4rc9cf2v7rm8fskkf60hsdcf6qna822";
     };
+    inputs = [ pkgs.luajit ];
+    preConfigure = ''
+      export LUAJIT_LIB="${pkgs.luajit}/lib"
+      export LUAJIT_INC="${pkgs.luajit}/include/luajit-2.0"
+    '';
   };
 
   modsecurity = {
@@ -80,100 +112,12 @@
     inputs = [ pkgs.curl pkgs.geoip pkgs.libmodsecurity pkgs.libxml2 pkgs.lmdb pkgs.yajl ];
   };
 
-  echo = {
+  moreheaders = {
     src = fetchFromGitHub {
       owner = "openresty";
-      repo = "echo-nginx-module";
-      rev = "v0.61";
-      sha256 = "0brjhhphi94ms4gia7za0mfx0png4jbhvq6j0nzjwp537iyiy23k";
-    };
-  };
-
-  develkit = {
-    src = fetchFromGitHub {
-      owner = "simpl";
-      repo = "ngx_devel_kit";
-      rev = "v0.3.1rc1";
-      sha256 = "00vqvpx67qra2hr85hkvj1dha4h7x7v9sblw7w1df11nq1gzsdbb";
-    };
-  };
-
-  lua = {
-    src = fetchFromGitHub {
-      owner = "openresty";
-      repo = "lua-nginx-module";
-      rev = "v0.10.13";
-      sha256 = "19mpc76lfhyyvkfs2n08b4rc9cf2v7rm8fskkf60hsdcf6qna822";
-    };
-    inputs = [ pkgs.luajit ];
-    preConfigure = ''
-      export LUAJIT_LIB="${pkgs.luajit}/lib"
-      export LUAJIT_INC="${pkgs.luajit}/include/luajit-2.0"
-    '';
-  };
-
-  set-misc = {
-    src = fetchFromGitHub {
-      owner = "openresty";
-      repo = "set-misc-nginx-module";
-      rev = "v0.32";
-      sha256 = "048a6jwinbjgxiprjj9ml3fdp0mhkx89g6ggams57fsx9m5vaxax";
-    };
-  };
-
-  sla = {
-    src = fetchFromGitHub {
-      owner = "goldenclone";
-      repo = "nginx-sla";
-      rev = "7778f0125974befbc83751d0e1cadb2dcea57601";
-      sha256 = "1x5hm6r0dkm02ffny8kjd7mmq8przyd9amg2qvy5700x6lb63pbs";
-    };
-  }; 
-
-  fluentd = {
-    src = fetchFromGitHub {
-      owner = "fluent";
-      repo = "nginx-fluentd-module";
-      rev = "8af234043059c857be27879bc547c141eafd5c13";
-      sha256 = "1ycb5zd9sw60ra53jpak1m73zwrjikwhrrh9q6266h1mlyns7zxm";
-    };
-  };
-
-  pam = {
-    src = fetchFromGitHub {
-      owner = "stogh";
-      repo = "ngx_http_auth_pam_module";
-      rev = "v1.5.1";
-      sha256 = "031q006bcv10dzxi3mzamqiyg14p48v0bzd5mrwz073pbf0ba2fl";
-    };
-    inputs = [ pkgs.pam ];
-  };
-
-  statsd = {
-    src = fetchFromGitHub {
-      owner = "apcera";
-      repo = "nginx-statsd";
-      rev = "b970e40467a624ba710c9a5106879a0554413d15";
-      sha256 = "1x8j4i1i2ahrr7qvz03vkldgdjdxi6mx75mzkfizfcc8smr4salr";
-    };
-  };
-
-  upstream-check = {
-    src = fetchFromGitHub {
-      owner = "yaoweibin";
-      repo = "nginx_upstream_check_module";
-      rev = "9aecf15ec379fe98f62355c57b60c0bc83296f04";
-      sha256 = "1cjisxw1wykll683nw09k0i1nvzslp4dr59x58cvarpk43paim2y";
-    };
-  };
-
-  # For an example usage, see https://easyengine.io/wordpress-nginx/tutorials/single-site/fastcgi-cache-with-purging/
-  fastcgi-cache-purge = {
-    src = fetchFromGitHub {
-      owner  = "FRiCKLE";
-      repo   = "ngx_cache_purge";
-      rev    = "2.3";
-      sha256 = "0ib2jrbjwrhvmihhnzkp4w87fxssbbmmmj6lfdwpm6ni8p9g60dw";
+      repo = "headers-more-nginx-module";
+      rev = "v0.33";
+      sha256 = "1cgdjylrdd69vlkwwmn018hrglzjwd83nqva1hrapgcfw12f7j53";
     };
   };
 
@@ -207,12 +151,67 @@
       inputs = [ pkgs.zlib pkgs.libuuid ]; # psol deps
     };
 
-    shibboleth = {
-      src = fetchFromGitHub {
-        owner = "nginx-shib";
-        repo = "nginx-http-shibboleth";
-        rev = "48b70d87bf7796d7813813a837e52b3a86e6f6f4";
-        sha256 = "0k8xcln5sf0m4r0m550dkhl07zhncp285dpysk6r4v6vqzqmhzdc";
-      };
+  pam = {
+    src = fetchFromGitHub {
+      owner = "stogh";
+      repo = "ngx_http_auth_pam_module";
+      rev = "v1.5.1";
+      sha256 = "031q006bcv10dzxi3mzamqiyg14p48v0bzd5mrwz073pbf0ba2fl";
     };
+    inputs = [ pkgs.pam ];
+  };
+
+  rtmp ={
+    src = fetchFromGitHub {
+      owner = "arut";
+      repo = "nginx-rtmp-module";
+      rev = "v1.2.1";
+      sha256 = "0na1aam176irz6w148hnvamqy1ilbn4abhdzkva0yrm35a3ksbzn";
+    };
+  };
+
+  set-misc = {
+    src = fetchFromGitHub {
+      owner = "openresty";
+      repo = "set-misc-nginx-module";
+      rev = "v0.32";
+      sha256 = "048a6jwinbjgxiprjj9ml3fdp0mhkx89g6ggams57fsx9m5vaxax";
+    };
+  };
+
+  shibboleth = {
+    src = fetchFromGitHub {
+      owner = "nginx-shib";
+      repo = "nginx-http-shibboleth";
+      rev = "48b70d87bf7796d7813813a837e52b3a86e6f6f4";
+      sha256 = "0k8xcln5sf0m4r0m550dkhl07zhncp285dpysk6r4v6vqzqmhzdc";
+    };
+  };
+
+  sla = {
+    src = fetchFromGitHub {
+      owner = "goldenclone";
+      repo = "nginx-sla";
+      rev = "7778f0125974befbc83751d0e1cadb2dcea57601";
+      sha256 = "1x5hm6r0dkm02ffny8kjd7mmq8przyd9amg2qvy5700x6lb63pbs";
+    };
+  }; 
+
+  statsd = {
+    src = fetchFromGitHub {
+      owner = "apcera";
+      repo = "nginx-statsd";
+      rev = "b970e40467a624ba710c9a5106879a0554413d15";
+      sha256 = "1x8j4i1i2ahrr7qvz03vkldgdjdxi6mx75mzkfizfcc8smr4salr";
+    };
+  };
+
+  upstream-check = {
+    src = fetchFromGitHub {
+      owner = "yaoweibin";
+      repo = "nginx_upstream_check_module";
+      rev = "9aecf15ec379fe98f62355c57b60c0bc83296f04";
+      sha256 = "1cjisxw1wykll683nw09k0i1nvzslp4dr59x58cvarpk43paim2y";
+    };
+  };
 }

From 7307c35f3092efc753740a0b503663367f13edc1 Mon Sep 17 00:00:00 2001
From: Izorkin <Izorkin@gmail.com>
Date: Sun, 15 Jul 2018 23:58:01 +0300
Subject: [PATCH 135/139] mariadb: 10.2.15 -> 10.2.16

---
 pkgs/servers/sql/mariadb/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/sql/mariadb/default.nix b/pkgs/servers/sql/mariadb/default.nix
index d12621a4608..126a8cf0690 100644
--- a/pkgs/servers/sql/mariadb/default.nix
+++ b/pkgs/servers/sql/mariadb/default.nix
@@ -22,14 +22,14 @@ galeraLibs = buildEnv {
 };
 
 common = rec { # attributes common to both builds
-  version = "10.2.15";
+  version = "10.2.16";
 
   src = fetchurl {
     urls = [
       "https://downloads.mariadb.org/f/mariadb-${version}/source/mariadb-${version}.tar.gz"
       "https://downloads.mariadb.com/MariaDB/mariadb-${version}/source/mariadb-${version}.tar.gz"
     ];
-    sha256 = "04ds6vkb7k2lqpcdz663z4ll1jx1zz2hqxz5nj7gs8pwb18j1pik";
+    sha256 = "1i2dwpp96ywjk147qqpcad8vqcy4rxmfbv2cb8ww3sffpa9yx0n1";
     name   = "mariadb-${version}.tar.gz";
   };
 

From 152f6087b333ea91e358c976e9a1ee3588314d55 Mon Sep 17 00:00:00 2001
From: Michael Hoang <enzime@users.noreply.github.com>
Date: Mon, 16 Jul 2018 12:49:38 +1000
Subject: [PATCH 136/139] mpv: add Cocoa support for macOS

Only enable X11 Support on Linux by default. Add CoreFoundation first in
the list of buildInputs to ensure that it is loaded before CF-osx
allowing it to provide <CoreFoundation/CFAttributedString.h>.
---
 pkgs/applications/video/mpv/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/video/mpv/default.nix b/pkgs/applications/video/mpv/default.nix
index 7880c315087..61e3a7d895d 100644
--- a/pkgs/applications/video/mpv/default.nix
+++ b/pkgs/applications/video/mpv/default.nix
@@ -3,7 +3,7 @@
 , freefont_ttf, freetype, libass, libpthreadstubs
 , lua, luasocket, libuchardet, libiconv ? null, darwin
 
-, x11Support ? true,
+, x11Support ? stdenv.isLinux,
     libGLU_combined       ? null,
     libX11     ? null,
     libXext    ? null,
@@ -98,7 +98,8 @@ in stdenv.mkDerivation rec {
     patchShebangs ./TOOLS/
   '';
 
-  NIX_LDFLAGS = optionalString x11Support "-lX11 -lXext";
+  NIX_LDFLAGS = optionalString x11Support "-lX11 -lXext "
+              + optionalString stdenv.isDarwin "-framework CoreFoundation";
 
   configureFlags = [
     "--enable-libmpv-shared"
@@ -155,7 +156,7 @@ in stdenv.mkDerivation rec {
     ++ optionals x11Support        [ libX11 libXext libGLU_combined libXxf86vm libXrandr ]
     ++ optionals waylandSupport    [ wayland wayland-protocols libxkbcommon ]
     ++ optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [
-      libiconv Cocoa CoreAudio
+      CoreFoundation libiconv Cocoa CoreAudio
     ]);
 
   enableParallelBuilding = true;

From f68920176c24bd70cfdf772bab7bd3997a3f25d6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sun, 15 Jul 2018 21:07:06 -0700
Subject: [PATCH 137/139] shairport-sync: 3.1.7 -> 3.2

---
 pkgs/servers/shairport-sync/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/shairport-sync/default.nix b/pkgs/servers/shairport-sync/default.nix
index f7a9fc65835..e880e490a6a 100644
--- a/pkgs/servers/shairport-sync/default.nix
+++ b/pkgs/servers/shairport-sync/default.nix
@@ -2,11 +2,11 @@
 , libdaemon, popt, pkgconfig, libconfig, libpulseaudio, soxr }:
 
 stdenv.mkDerivation rec {
-  version = "3.1.7";
+  version = "3.2";
   name = "shairport-sync-${version}";
 
   src = fetchFromGitHub {
-    sha256 = "1ip8vlyly190fhcd55am5xvqisvch8mnw50xwbm663dapdb1f8ys";
+    sha256 = "07b0g5iyjmqyq6zxx5mv72kri66jw6wv6i3gzax6jhkdiag06lwm";
     rev = version;
     repo = "shairport-sync";
     owner = "mikebrady";

From 794a60a2fbd76dfdbf6ec0e57dc0726bae3bdc56 Mon Sep 17 00:00:00 2001
From: fragamus <innovative.engineer@gmail.com>
Date: Sun, 15 Jul 2018 23:12:07 -0500
Subject: [PATCH 138/139] bliss: fix header location (#43170)

---
 pkgs/applications/science/math/bliss/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/math/bliss/default.nix b/pkgs/applications/science/math/bliss/default.nix
index b96aa60da68..1b7a9736007 100644
--- a/pkgs/applications/science/math/bliss/default.nix
+++ b/pkgs/applications/science/math/bliss/default.nix
@@ -21,11 +21,11 @@ stdenv.mkDerivation rec {
   '';
 
   installPhase = ''
-    mkdir -p $out/bin $out/share/doc/bliss $out/lib $out/include
+    mkdir -p $out/bin $out/share/doc/bliss $out/lib $out/include/bliss
     mv bliss $out/bin 
     mv html/* COPYING* $out/share/doc/bliss
     mv *.a $out/lib
-    mv *.h *.hh $out/include
+    mv *.h *.hh $out/include/bliss
   '';
 
   meta = with stdenv.lib; {

From fd2448b2e6ec49808bb3a92e7ad99ac8318bb8e5 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Sun, 15 Jul 2018 17:40:53 -0700
Subject: [PATCH 139/139] aerospike: init at 4.2.0.4

Co-authored-by: Volth <volth@webmaster.ms>
---
 nixos/modules/misc/ids.nix                    |   2 +
 nixos/modules/module-list.nix                 |   1 +
 .../modules/services/databases/aerospike.nix  | 155 ++++++++++++++++++
 pkgs/servers/nosql/aerospike/default.nix      |  36 ++++
 pkgs/top-level/all-packages.nix               |   2 +
 5 files changed, 196 insertions(+)
 create mode 100644 nixos/modules/services/databases/aerospike.nix
 create mode 100644 pkgs/servers/nosql/aerospike/default.nix

diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix
index aac86087f9e..ffe8fbf2c00 100644
--- a/nixos/modules/misc/ids.nix
+++ b/nixos/modules/misc/ids.nix
@@ -143,6 +143,7 @@
       jenkins = 109;
       systemd-journal-gateway = 110;
       #notbit = 111; # unused
+      aerospike = 111;
       ngircd = 112;
       btsync = 113;
       minecraft = 114;
@@ -436,6 +437,7 @@
       jenkins = 109;
       systemd-journal-gateway = 110;
       #notbit = 111; # unused
+      aerospike = 111;
       #ngircd = 112; # unused
       btsync = 113;
       #minecraft = 114; # unused
diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index cf30fc693fc..7bbf942b6a3 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -200,6 +200,7 @@
   ./services/continuous-integration/jenkins/slave.nix
   ./services/databases/4store-endpoint.nix
   ./services/databases/4store.nix
+  ./services/databases/aerospike.nix
   ./services/databases/clickhouse.nix
   ./services/databases/couchdb.nix
   ./services/databases/firebird.nix
diff --git a/nixos/modules/services/databases/aerospike.nix b/nixos/modules/services/databases/aerospike.nix
new file mode 100644
index 00000000000..5f33164998b
--- /dev/null
+++ b/nixos/modules/services/databases/aerospike.nix
@@ -0,0 +1,155 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+
+  cfg = config.services.aerospike;
+
+  aerospikeConf = pkgs.writeText "aerospike.conf" ''
+    # This stanza must come first.
+    service {
+      user aerospike
+      group aerospike
+      paxos-single-replica-limit 1 # Number of nodes where the replica count is automatically reduced to 1.
+      proto-fd-max 15000
+      work-directory ${cfg.workDir}
+    }
+    logging {
+      console {
+        context any info
+      }
+    }
+    mod-lua {
+      system-path ${cfg.package}/share/udf/lua
+      user-path ${cfg.workDir}/udf/lua
+    }
+    network {
+      ${cfg.networkConfig}
+    }
+    ${cfg.extraConfig}
+  '';
+
+in
+
+{
+
+  ###### interface
+
+  options = {
+
+    services.aerospike = {
+      enable = mkEnableOption "Aerospike server";
+
+      package = mkOption {
+        default = pkgs.aerospike;
+        type = types.package;
+        description = "Which Aerospike derivation to use";
+      };
+
+      workDir = mkOption {
+        type = types.str;
+        default = "/var/lib/aerospike";
+        description = "Location where Aerospike stores its files";
+      };
+
+      networkConfig = mkOption {
+        type = types.lines;
+        default = ''
+          service {
+            address any
+            port 3000
+          }
+
+          heartbeat {
+            address any
+            mode mesh
+            port 3002
+            interval 150
+            timeout 10
+          }
+
+          fabric {
+            address any
+            port 3001
+          }
+
+          info {
+            address any
+            port 3003
+          }
+        '';
+        description = "network section of configuration file";
+      };
+
+      extraConfig = mkOption {
+        type = types.lines;
+        default = "";
+        example = ''
+          namespace test {
+            replication-factor 2
+            memory-size 4G
+            default-ttl 30d
+            storage-engine memory
+          }
+        '';
+        description = "Extra configuration";
+      };
+    };
+
+  };
+
+
+  ###### implementation
+
+  config = mkIf config.services.aerospike.enable {
+
+    users.users.aerospike = {
+      name = "aerospike";
+      group = "aerospike";
+      uid = config.ids.uids.aerospike;
+      description = "Aerospike server user";
+    };
+    users.groups.aerospike.gid = config.ids.gids.aerospike;
+
+    systemd.services.aerospike = rec {
+      description = "Aerospike server";
+
+      wantedBy = [ "multi-user.target" ];
+      after = [ "network.target" ];
+
+      serviceConfig = {
+        ExecStart = "${cfg.package}/bin/asd --fgdaemon --config-file ${aerospikeConf}";
+        User = "aerospike";
+        Group = "aerospike";
+        LimitNOFILE = 100000;
+        PermissionsStartOnly = true;
+      };
+
+      preStart = ''
+        if [ $(echo "$(${pkgs.procps}/bin/sysctl -n kernel.shmall) < 4294967296" | ${pkgs.bc}/bin/bc) == "1"  ]; then
+          echo "kernel.shmall too low, setting to 4G pages"
+          ${pkgs.procps}/bin/sysctl -w kernel.shmall=4294967296
+        fi
+        if [ $(echo "$(${pkgs.procps}/bin/sysctl -n kernel.shmmax) < 1073741824" | ${pkgs.bc}/bin/bc) == "1"  ]; then
+          echo "kernel.shmmax too low, setting to 1GB"
+          ${pkgs.procps}/bin/sysctl -w kernel.shmmax=1073741824
+        fi
+        if [ $(echo "$(cat /proc/sys/net/core/rmem_max) < 15728640" | ${pkgs.bc}/bin/bc) == "1" ]; then
+          echo "increasing socket buffer limit (/proc/sys/net/core/rmem_max): $(cat /proc/sys/net/core/rmem_max) -> 15728640"
+          echo 15728640 > /proc/sys/net/core/rmem_max
+        fi
+        if [ $(echo "$(cat /proc/sys/net/core/wmem_max) <  5242880" | ${pkgs.bc}/bin/bc) == "1"  ]; then
+          echo "increasing socket buffer limit (/proc/sys/net/core/wmem_max): $(cat /proc/sys/net/core/wmem_max) -> 5242880"
+          echo  5242880 > /proc/sys/net/core/wmem_max
+        fi
+        install -d -m0700 -o ${serviceConfig.User} -g ${serviceConfig.Group} "${cfg.workDir}"
+        install -d -m0700 -o ${serviceConfig.User} -g ${serviceConfig.Group} "${cfg.workDir}/smd"
+        install -d -m0700 -o ${serviceConfig.User} -g ${serviceConfig.Group} "${cfg.workDir}/udf"
+        install -d -m0700 -o ${serviceConfig.User} -g ${serviceConfig.Group} "${cfg.workDir}/udf/lua"
+      '';
+    };
+
+  };
+
+}
diff --git a/pkgs/servers/nosql/aerospike/default.nix b/pkgs/servers/nosql/aerospike/default.nix
new file mode 100644
index 00000000000..4426128dafd
--- /dev/null
+++ b/pkgs/servers/nosql/aerospike/default.nix
@@ -0,0 +1,36 @@
+{ stdenv, fetchFromGitHub, autoconf, automake, libtool, openssl, zlib }:
+
+stdenv.mkDerivation rec {
+  name = "aerospike-server-${version}";
+  version = "4.2.0.4";
+
+  src = fetchFromGitHub {
+    owner = "aerospike";
+    repo = "aerospike-server";
+    rev = version;
+    sha256 = "1vqi3xir4l57v62q1ns3713vajxffs6crss8fpvbcs57p7ygx3s7";
+    fetchSubmodules = true;
+  };
+
+  nativeBuildInputs = [ autoconf automake libtool ];
+  buildInputs = [ openssl zlib ];
+
+  preBuild = ''
+    patchShebangs build/gen_version
+    substituteInPlace build/gen_version --replace 'git describe' 'echo ${version}'
+  '';
+
+  installPhase = ''
+    mkdir -p $out/bin $out/share/udf
+    cp      target/Linux-x86_64/bin/asd $out/bin/asd
+    cp -dpR modules/lua-core/src        $out/share/udf/lua
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Flash-optimized, in-memory, NoSQL database";
+    homepage = http://aerospike.com/;
+    license = licenses.agpl3;
+    platforms = [ "x86_64-linux" ];
+    maintainer = with maintainers; [ kalbasit ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 0e71563ba47..e0e4bfd4043 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -429,6 +429,8 @@ with pkgs;
     portaudioSupport  = config.aegisub.portaudioSupport or false;
   };
 
+  aerospike = callPackage ../servers/nosql/aerospike { };
+
   aespipe = callPackage ../tools/security/aespipe { };
 
   aescrypt = callPackage ../tools/misc/aescrypt { };