diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index b84bf64a3ee..fa9849560a0 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19549,7 +19549,9 @@ with pkgs;
   });
 
   samtools = callPackage ../applications/science/biology/samtools/default.nix { };
-  samtools_0_1_19 = callPackage ../applications/science/biology/samtools/samtools_0_1_19.nix { };
+  samtools_0_1_19 = callPackage ../applications/science/biology/samtools/samtools_0_1_19.nix {
+    stdenv = gccStdenv;
+  };
 
   snpeff = callPackage ../applications/science/biology/snpeff/default.nix { };