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r-modules: prefer gsl 1.x since 2.x is unsupported by r-gsl-1.9.x

This commit is contained in:
Peter Simons 2015-12-29 20:52:19 +01:00
parent a1e0894cb4
commit 3a8112f7da
1 changed files with 31 additions and 31 deletions
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62
pkgs/development/r-modules/default.nix
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@ -221,53 +221,53 @@ let
}; };
packagesWithNativeBuildInputs = { packagesWithNativeBuildInputs = {
abn = [ pkgs.gsl ]; abn = [ pkgs.gsl_1 ];
adimpro = [ pkgs.imagemagick ]; adimpro = [ pkgs.imagemagick ];
audio = [ pkgs.portaudio ]; audio = [ pkgs.portaudio ];
BayesSAE = [ pkgs.gsl ]; BayesSAE = [ pkgs.gsl_1 ];
BayesVarSel = [ pkgs.gsl ]; BayesVarSel = [ pkgs.gsl_1 ];
BayesXsrc = [ pkgs.readline pkgs.ncurses ]; BayesXsrc = [ pkgs.readline pkgs.ncurses ];
bigGP = [ pkgs.openmpi ]; bigGP = [ pkgs.openmpi ];
BiocCheck = [ pkgs.which ]; BiocCheck = [ pkgs.which ];
Biostrings = [ pkgs.zlib ]; Biostrings = [ pkgs.zlib ];
bnpmr = [ pkgs.gsl ]; bnpmr = [ pkgs.gsl_1 ];
BNSP = [ pkgs.gsl ]; BNSP = [ pkgs.gsl_1 ];
cairoDevice = [ pkgs.gtk2 ]; cairoDevice = [ pkgs.gtk2 ];
Cairo = [ pkgs.libtiff pkgs.libjpeg pkgs.cairo ]; Cairo = [ pkgs.libtiff pkgs.libjpeg pkgs.cairo ];
Cardinal = [ pkgs.which ]; Cardinal = [ pkgs.which ];
chebpol = [ pkgs.fftw ]; chebpol = [ pkgs.fftw ];
ChemmineOB = [ pkgs.openbabel pkgs.pkgconfig ]; ChemmineOB = [ pkgs.openbabel pkgs.pkgconfig ];
cit = [ pkgs.gsl ]; cit = [ pkgs.gsl_1 ];
curl = [ pkgs.curl ]; curl = [ pkgs.curl ];
devEMF = [ pkgs.xorg.libXft ]; devEMF = [ pkgs.xorg.libXft ];
diversitree = [ pkgs.gsl pkgs.fftw ]; diversitree = [ pkgs.gsl_1 pkgs.fftw ];
EMCluster = [ pkgs.liblapack ]; EMCluster = [ pkgs.liblapack ];
fftw = [ pkgs.fftw ]; fftw = [ pkgs.fftw ];
fftwtools = [ pkgs.fftw ]; fftwtools = [ pkgs.fftw ];
Formula = [ pkgs.gmp ]; Formula = [ pkgs.gmp ];
geoCount = [ pkgs.gsl ]; geoCount = [ pkgs.gsl_1 ];
git2r = [ pkgs.zlib pkgs.openssl ]; git2r = [ pkgs.zlib pkgs.openssl ];
GLAD = [ pkgs.gsl ]; GLAD = [ pkgs.gsl_1 ];
glpkAPI = [ pkgs.gmp pkgs.glpk ]; glpkAPI = [ pkgs.gmp pkgs.glpk ];
gmp = [ pkgs.gmp ]; gmp = [ pkgs.gmp ];
graphscan = [ pkgs.gsl ]; graphscan = [ pkgs.gsl_1 ];
gsl = [ pkgs.gsl ]; gsl = [ pkgs.gsl_1 ];
HiCseg = [ pkgs.gsl ]; HiCseg = [ pkgs.gsl_1 ];
iBMQ = [ pkgs.gsl ]; iBMQ = [ pkgs.gsl_1 ];
igraph = [ pkgs.gmp ]; igraph = [ pkgs.gmp ];
JavaGD = [ pkgs.jdk ]; JavaGD = [ pkgs.jdk ];
jpeg = [ pkgs.libjpeg ]; jpeg = [ pkgs.libjpeg ];
KFKSDS = [ pkgs.gsl ]; KFKSDS = [ pkgs.gsl_1 ];
kza = [ pkgs.fftw ]; kza = [ pkgs.fftw ];
libamtrack = [ pkgs.gsl ]; libamtrack = [ pkgs.gsl_1 ];
mixcat = [ pkgs.gsl ]; mixcat = [ pkgs.gsl_1 ];
mvabund = [ pkgs.gsl ]; mvabund = [ pkgs.gsl_1 ];
mwaved = [ pkgs.fftw ]; mwaved = [ pkgs.fftw ];
ncdf4 = [ pkgs.netcdf ]; ncdf4 = [ pkgs.netcdf ];
ncdf = [ pkgs.netcdf ]; ncdf = [ pkgs.netcdf ];
nloptr = [ pkgs.nlopt ]; nloptr = [ pkgs.nlopt ];
openssl = [ pkgs.openssl ]; openssl = [ pkgs.openssl ];
outbreaker = [ pkgs.gsl ]; outbreaker = [ pkgs.gsl_1 ];
pander = [ pkgs.pandoc pkgs.which ]; pander = [ pkgs.pandoc pkgs.which ];
pbdMPI = [ pkgs.openmpi ]; pbdMPI = [ pkgs.openmpi ];
pbdNCDF4 = [ pkgs.netcdf ]; pbdNCDF4 = [ pkgs.netcdf ];
@ -278,7 +278,7 @@ let
proj4 = [ pkgs.proj ]; proj4 = [ pkgs.proj ];
qtbase = [ pkgs.qt4 ]; qtbase = [ pkgs.qt4 ];
qtpaint = [ pkgs.qt4 ]; qtpaint = [ pkgs.qt4 ];
R2GUESS = [ pkgs.gsl ]; R2GUESS = [ pkgs.gsl_1 ];
R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ]; R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
RAppArmor = [ pkgs.libapparmor ]; RAppArmor = [ pkgs.libapparmor ];
rapportools = [ pkgs.which ]; rapportools = [ pkgs.which ];
@ -286,9 +286,9 @@ let
rbamtools = [ pkgs.zlib ]; rbamtools = [ pkgs.zlib ];
rcdd = [ pkgs.gmp ]; rcdd = [ pkgs.gmp ];
RcppCNPy = [ pkgs.zlib ]; RcppCNPy = [ pkgs.zlib ];
RcppGSL = [ pkgs.gsl ]; RcppGSL = [ pkgs.gsl_1 ];
RcppOctave = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.octave ]; RcppOctave = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.octave ];
RcppZiggurat = [ pkgs.gsl ]; RcppZiggurat = [ pkgs.gsl_1 ];
rgdal = [ pkgs.proj pkgs.gdal ]; rgdal = [ pkgs.proj pkgs.gdal ];
rgeos = [ pkgs.geos ]; rgeos = [ pkgs.geos ];
rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ]; rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ];
@ -297,11 +297,11 @@ let
RGtk2 = [ pkgs.gtk2 ]; RGtk2 = [ pkgs.gtk2 ];
Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ]; Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ];
Rhtslib = [ pkgs.zlib ]; Rhtslib = [ pkgs.zlib ];
ridge = [ pkgs.gsl ]; ridge = [ pkgs.gsl_1 ];
RJaCGH = [ pkgs.zlib ]; RJaCGH = [ pkgs.zlib ];
rjags = [ pkgs.jags ]; rjags = [ pkgs.jags ];
rJava = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.jdk pkgs.libzip ]; rJava = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.jdk pkgs.libzip ];
Rlibeemd = [ pkgs.gsl ]; Rlibeemd = [ pkgs.gsl_1 ];
rmatio = [ pkgs.zlib ]; rmatio = [ pkgs.zlib ];
Rmpfr = [ pkgs.gmp pkgs.mpfr ]; Rmpfr = [ pkgs.gmp pkgs.mpfr ];
Rmpi = [ pkgs.openmpi ]; Rmpi = [ pkgs.openmpi ];
@ -326,28 +326,28 @@ let
SAVE = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre ]; SAVE = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre ];
sdcTable = [ pkgs.gmp pkgs.glpk ]; sdcTable = [ pkgs.gmp pkgs.glpk ];
seewave = [ pkgs.fftw pkgs.libsndfile ]; seewave = [ pkgs.fftw pkgs.libsndfile ];
SemiCompRisks = [ pkgs.gsl ]; SemiCompRisks = [ pkgs.gsl_1 ];
seqinr = [ pkgs.zlib ]; seqinr = [ pkgs.zlib ];
seqminer = [ pkgs.zlib pkgs.bzip2 ]; seqminer = [ pkgs.zlib pkgs.bzip2 ];
showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype ]; showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype ];
simplexreg = [ pkgs.gsl ]; simplexreg = [ pkgs.gsl_1 ];
SOD = [ pkgs.cudatoolkit ]; # requres CL/cl.h SOD = [ pkgs.cudatoolkit ]; # requres CL/cl.h
spate = [ pkgs.fftw ]; spate = [ pkgs.fftw ];
sprint = [ pkgs.openmpi ]; sprint = [ pkgs.openmpi ];
ssanv = [ pkgs.proj ]; ssanv = [ pkgs.proj ];
stsm = [ pkgs.gsl ]; stsm = [ pkgs.gsl_1 ];
stringi = [ pkgs.icu ]; stringi = [ pkgs.icu ];
survSNP = [ pkgs.gsl ]; survSNP = [ pkgs.gsl_1 ];
sysfonts = [ pkgs.zlib pkgs.libpng pkgs.freetype ]; sysfonts = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
TAQMNGR = [ pkgs.zlib ]; TAQMNGR = [ pkgs.zlib ];
tiff = [ pkgs.libtiff ]; tiff = [ pkgs.libtiff ];
TKF = [ pkgs.gsl ]; TKF = [ pkgs.gsl_1 ];
tkrplot = [ pkgs.xorg.libX11 ]; tkrplot = [ pkgs.xorg.libX11 ];
topicmodels = [ pkgs.gsl ]; topicmodels = [ pkgs.gsl_1 ];
udunits2 = [ pkgs.udunits pkgs.expat ]; udunits2 = [ pkgs.udunits pkgs.expat ];
V8 = [ pkgs.v8 ]; V8 = [ pkgs.v8 ];
VBLPCM = [ pkgs.gsl ]; VBLPCM = [ pkgs.gsl_1 ];
VBmix = [ pkgs.gsl pkgs.fftw pkgs.qt4 ]; VBmix = [ pkgs.gsl_1 pkgs.fftw pkgs.qt4 ];
WhopGenome = [ pkgs.zlib ]; WhopGenome = [ pkgs.zlib ];
XBRL = [ pkgs.zlib pkgs.libxml2 ]; XBRL = [ pkgs.zlib pkgs.libxml2 ];
xml2 = [ pkgs.libxml2 ]; xml2 = [ pkgs.libxml2 ];