Merge branch 'master' into staging

* master: (30 commits)
  bitlbee: fix build
  git: 2.17.0 -> 2.17.1
  sc-controller: 0.4.2 -> 0.4.3
  zeroc-ice: fix parallel building
  pythonPackages.bsddb3: fix build after 0fd461d5
  haskellPackages.hlibgit2: fix build after #28029
  gdk-pixbuf: patch library rpath references on darwin
  virtualbox: fix build after #28029
  GHCJS darwin fixes (#41120)
  neovim-remote: 1.8.6 -> 2.0.5
  messenger-for-desktop: remove (#41224)
  typora: gnome2 cleanup (#41167)
  discord: gnome2 cleanup (#41174)
  skypeforlinux: gnome2 cleanup (#41176)
  wire-desktop: gnome2 cleanup (#41155)
  hyper: gnome2 cleanup (#41170)
  drone: 0.5 -> 0.8.5 (#41200)
  racket: use proper uname, allow for unix sockets
  kytea: fix build after #28029
  yoda: fix build after #28029
  ...

lib/systems/for-meta.nix

@@ -22,9 +22,9 @@ in rec {
   freebsd = [ patterns.isFreeBSD ];
   # Should be better, but MinGW is unclear, and HURD is bit-rotted.
   gnu     = [
-    { kernel = parse.kernels.linux; abi = parse.abis.gnu; }
+    { kernel = parse.kernels.linux; abi = abis.gnu; }
-    { kernel = parse.kernels.linux; abi = parse.abis.gnueabi; }
+    { kernel = parse.kernels.linux; abi = abis.gnueabi; }
-    { kernel = parse.kernels.linux; abi = parse.abis.gnueabihf; }
+    { kernel = parse.kernels.linux; abi = abis.gnueabihf; }
   ];
   illumos = [ patterns.isSunOS ];
   linux   = [ patterns.isLinux ];

nixos/modules/programs/environment.nix

@@ -33,8 +33,6 @@ in
     environment.profileRelativeEnvVars =
       { PATH = [ "/bin" ];
         INFOPATH = [ "/info" "/share/info" ];
-        PKG_CONFIG_PATH = [ "/lib/pkgconfig" ];
-        PERL5LIB = [ "/lib/perl5/site_perl" ];
         KDEDIRS = [ "" ];
         STRIGI_PLUGIN_PATH = [ "/lib/strigi/" ];
         QT_PLUGIN_PATH = [ "/lib/qt4/plugins" "/lib/kde4/plugins" ];

pkgs/applications/editors/neovim/neovim-remote.nix

@@ -4,14 +4,14 @@ with stdenv.lib;
 
 pythonPackages.buildPythonPackage rec {
   name = "neovim-remote-${version}";
-  version = "1.8.6";
+  version = "2.0.5";
   disabled = !pythonPackages.isPy3k;
 
   src = fetchFromGitHub {
     owner = "mhinz";
     repo = "neovim-remote";
     rev = "v${version}";
-    sha256 = "0x01zpmxi37jr7j2az2bd8902h7zhkpg6kpvc8xmll9f7703zz2l";
+    sha256 = "08qsi61ba5d69ca77layypzvi7nalx4niy97xn4w88jibnbmbrxw";
   };
 
   propagatedBuildInputs = with pythonPackages; [ neovim psutil ];

pkgs/applications/editors/typora/default.nix

@@ -1,5 +1,5 @@
-{ stdenv, fetchurl, dpkg, lib, glib, dbus, makeWrapper, gnome2, gnome3, gtk3, atk, cairo
+{ stdenv, fetchurl, dpkg, lib, glib, dbus, makeWrapper, gnome3, gtk3, atk, cairo, pango
-, freetype, fontconfig, nspr, nss, xorg, alsaLib, cups, expat, udev, wrapGAppsHook }:
+, gdk_pixbuf, freetype, fontconfig, nspr, nss, xorg, alsaLib, cups, expat, udev, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   name = "typora-${version}";
@@ -20,10 +20,9 @@ stdenv.mkDerivation rec {
 
     rpath = stdenv.lib.makeLibraryPath [
       alsaLib
-      gnome2.GConf
+      gnome3.gconf
-      gnome2.gtk
+      gdk_pixbuf
-      gnome2.gdk_pixbuf
+      pango
-      gnome2.pango
       gnome3.defaultIconTheme
       expat
       gtk3

pkgs/applications/misc/hyper/default.nix

@@ -1,14 +1,13 @@
-{ stdenv, lib, fetchurl, dpkg, gtk2, atk, glib, pango, gdk_pixbuf, cairo
+{ stdenv, lib, fetchurl, dpkg, atk, glib, pango, gdk_pixbuf, gnome3, gtk2, cairo
 , freetype, fontconfig, dbus, libXi, libXcursor, libXdamage, libXrandr
 , libXcomposite, libXext, libXfixes, libXrender, libX11, libXtst, libXScrnSaver
-, libxcb
+, libxcb, nss, nspr, alsaLib, cups, expat, libudev, libpulseaudio }:
-, GConf, nss, nspr, alsaLib, cups, expat, libudev, libpulseaudio }:
 
 let
   libPath = stdenv.lib.makeLibraryPath [
-    stdenv.cc.cc gtk2 atk glib pango gdk_pixbuf cairo freetype fontconfig dbus
+    stdenv.cc.cc gtk2 gnome3.gconf atk glib pango gdk_pixbuf cairo freetype fontconfig dbus
     libXi libXcursor libXdamage libXrandr libXcomposite libXext libXfixes libxcb
-    libXrender libX11 libXtst libXScrnSaver GConf nss nspr alsaLib cups expat libudev libpulseaudio
+    libXrender libX11 libXtst libXScrnSaver nss nspr alsaLib cups expat libudev libpulseaudio
   ];
 in
 stdenv.mkDerivation rec {

pkgs/applications/networking/instant-messengers/bitlbee/default.nix

@@ -15,9 +15,6 @@ stdenv.mkDerivation rec {
   buildInputs = [ gnutls glib libotr python ]
     ++ optional enableLibPurple pidgin;
 
-  preConfigure = optionalString enableLibPurple
-    "export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:${pidgin}/lib/pkgconfig";
-
   configureFlags = [
     "--gcov=1"
     "--otr=1"
@@ -26,12 +23,12 @@ stdenv.mkDerivation rec {
   ]
   ++ optional enableLibPurple "--purple=1";
 
-  buildPhase = optionalString (!enableLibPurple) ''
+  installTargets = [ "install" "install-dev" ];
-    make install-dev
-  '';
 
   doCheck = !enableLibPurple; # Checks fail with libpurple for some reason
 
+  enableParallelBuilding = true;
+
   meta = {
     description = "IRC instant messaging gateway";
 

pkgs/applications/networking/instant-messengers/discord/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchurl, makeDesktopItem, makeWrapper
 , alsaLib, atk, cairo, cups, dbus, expat, fontconfig, freetype, gdk_pixbuf
-, glib, gnome2, gtk2, libnotify, libX11, libXcomposite, libXcursor, libXdamage
+, glib, gnome3, gtk2, libnotify, libX11, libXcomposite, libXcursor, libXdamage
 , libXext, libXfixes, libXi, libXrandr, libXrender, libXtst, nspr, nss, libxcb
 , pango, systemd, libXScrnSaver, libcxx, libpulseaudio }:
 
@@ -20,7 +20,7 @@ stdenv.mkDerivation rec {
     libPath = stdenv.lib.makeLibraryPath [
         libcxx systemd libpulseaudio
         stdenv.cc.cc alsaLib atk cairo cups dbus expat fontconfig freetype
-        gdk_pixbuf glib gnome2.GConf gtk2 libnotify libX11 libXcomposite
+        gdk_pixbuf glib gnome3.gconf gtk2 libnotify libX11 libXcomposite
         libXcursor libXdamage libXext libXfixes libXi libXrandr libXrender
         libXtst nspr nss libxcb pango systemd libXScrnSaver
      ];

pkgs/applications/networking/instant-messengers/messenger-for-desktop/default.nix

@@ -1,104 +0,0 @@
-{
-  stdenv, fetchurl, dpkg, alsaLib, atk, cairo, cups, curl, dbus, expat,
-  fontconfig, freetype, glib, gnome2, libnotify, nspr, nss, systemd, xorg
-}:
-
-with stdenv.lib;
-
-let
-
-  version = "2.0.6";
-
-  rpath = makeLibraryPath [
-    alsaLib
-    atk
-    cairo
-    cups
-    curl
-    dbus
-    expat
-    fontconfig
-    freetype
-    glib
-    gnome2.GConf
-    gnome2.gdk_pixbuf
-    gnome2.gtk
-    gnome2.pango
-    libnotify
-    nspr
-    nss
-    stdenv.cc.cc
-    systemd
-
-    xorg.libxkbfile
-    xorg.libX11
-    xorg.libXcomposite
-    xorg.libXcursor
-    xorg.libXdamage
-    xorg.libXext
-    xorg.libXfixes
-    xorg.libXi
-    xorg.libXrandr
-    xorg.libXrender
-    xorg.libXtst
-    xorg.libXScrnSaver
-  ] + ":${stdenv.cc.cc.lib}/lib64";
-
-  src =
-    if stdenv.system == "x86_64-linux" then
-      fetchurl {
-        url = "https://github.com/aluxian/Messenger-for-Desktop/releases/download/v2.0.6/messengerfordesktop-2.0.6-linux-amd64.deb";
-        sha256 = "bf3f3ed9ac46ceb4b7dffbeb33c7d15bbcbfcdd141c4dbfbb620e8bfefae906b";
-      }
-    else
-      throw "Messenger for Desktop is not supported on ${stdenv.system}";
-
-in stdenv.mkDerivation {
-  name = "messenger-for-desktop-${version}";
-
-  inherit src;
-
-  buildInputs = [ dpkg ];
-  unpackPhase = "true";
-  buildCommand = ''
-    mkdir -p $out
-    dpkg -x $src $out
-
-    mv $out/usr/share $out/share
-    mv $out/opt/messengerfordesktop $out/libexec
-    rmdir $out/usr $out/opt
-
-    chmod -R g-w $out
-
-    # patch the binaries
-    for file in $(find $out -type f \( -perm /0111 -o -name \*.so\* \) ); do
-      patchelf --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" "$file" || true
-      patchelf --set-rpath ${rpath}:$out/libexec $file || true
-    done
-
-    # add symlink to bin
-    mkdir -p $out/bin
-    ln -s $out/libexec/messengerfordesktop $out/bin/messengerfordesktop
-
-    # Fix the desktop link
-    substituteInPlace $out/share/applications/messengerfordesktop.desktop                 \
-      --replace /opt/messengerfordesktop/messengerfordesktop $out/bin/messengerfordesktop 
-  '';
-
-  meta = {
-    description = "Bring messenger.com to your Linux desktop.";
-    longDescription = ''
-      A simple & beautiful desktop client for Facebook Messenger. Chat without
-      distractions on macOS, Windows and Linux. Not affiliated with Facebook.
-      This is NOT an official product.
-    '';
-    homepage = https://messengerfordesktop.org;
-    license = licenses.mit;
-    maintainers = [
-      maintainers.shawndellysse
-    ];
-    platforms = [
-      "x86_64-linux"
-    ];
-  };
-}

pkgs/applications/networking/instant-messengers/skypeforlinux/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchurl, dpkg, makeWrapper
-, alsaLib, atk, cairo, cups, curl, dbus, expat, fontconfig, freetype, glib, glibc, gnome2
+, alsaLib, atk, cairo, cups, curl, dbus, expat, fontconfig, freetype, gdk_pixbuf, glib, glibc, gnome3
-, libnotify, libpulseaudio, libsecret, libstdcxx5, libv4l, nspr, nss, systemd, xorg }:
+, gtk2, libnotify, libpulseaudio, libsecret, libstdcxx5, libv4l, nspr, nss, pango, systemd, xorg }:
 
 let
 
@@ -22,17 +22,18 @@ let
     glibc
     libsecret
 
-    gnome2.GConf
+    gnome3.gconf
-    gnome2.gdk_pixbuf
+    gdk_pixbuf
-    gnome2.gtk
+    gtk2
-    gnome2.pango
     
-    gnome2.gnome-keyring
+
+    gnome3.gnome-keyring
 
     libnotify
     libpulseaudio
     nspr
     nss
+    pango
     stdenv.cc.cc
     systemd
     libstdcxx5

pkgs/applications/networking/instant-messengers/wire-desktop/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchurl, dpkg, makeDesktopItem, gnome2, atk, cairo, gdk_pixbuf, glib
+{ stdenv, lib, fetchurl, dpkg, makeDesktopItem, gnome3, gtk2, atk, cairo, pango, gdk_pixbuf, glib
 , freetype, fontconfig, dbus, libnotify, libX11, xorg, libXi, libXcursor, libXdamage
 , libXrandr, libXcomposite, libXext, libXfixes, libXrender, libXtst, libXScrnSaver
 , nss, nspr, alsaLib, cups, expat, udev, xdg_utils, hunspell
@@ -15,9 +15,9 @@ let
     freetype
     gdk_pixbuf
     glib
-    gnome2.GConf
+    gnome3.gconf
-    gnome2.gtk
+    gtk2
-    gnome2.pango
+    pango
     hunspell
     libnotify
     libX11

pkgs/applications/version-management/git-and-tools/git/default.nix

@@ -18,7 +18,7 @@ assert sendEmailSupport -> perlSupport;
 assert svnSupport -> perlSupport;
 
 let
-  version = "2.17.0";
+  version = "2.17.1";
   svn = subversionClient.override { perlBindings = perlSupport; };
 in
 
@@ -27,7 +27,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "https://www.kernel.org/pub/software/scm/git/git-${version}.tar.xz";
-    sha256 = "1ismz7nsz8dgjmk782xr9s0mr2qh06f72pdcgbxfmnw1bvlya5p9";
+    sha256 = "0pm6bdnrrm165k3krnazxcxadifk2gqi30awlbcf9fism1x6w4vr";
   };
 
   outputs = [ "out" ] ++ stdenv.lib.optional perlSupport "gitweb";

pkgs/applications/version-management/git-and-tools/svn-all-fast-export/default.nix

@@ -1,7 +1,7 @@
 { stdenv, fetchFromGitHub, fetchpatch, qmake, qtbase, qttools, subversion, apr }:
 
 let
-  version = "1.0.11";
+  version = "1.0.12";
 in
 stdenv.mkDerivation {
   name = "svn-all-fast-export-${version}";
@@ -10,18 +10,9 @@ stdenv.mkDerivation {
     owner = "svn-all-fast-export";
     repo = "svn2git";
     rev = version;
-    sha256 = "0lhnw8f15j4wkpswhrjd7bp9xkhbk32zmszaxayzfhbdl0g7pzwj";
+    sha256 = "158w2ynz16dlp992g8nfk7v2f5962z88b4xyv5dyjvbl4l1v7r0v";
   };
 
-  # https://github.com/svn-all-fast-export/svn2git/pull/40
-  patches = [
-    (fetchpatch {
-      name = "pr40.patch";
-      sha256 = "0mwncklzncsifql9zlxlbj3clsif5p2v1xs8nmxrw44mqvaysjw3";
-      url = https://github.com/svn-all-fast-export/svn2git/compare/f00d5a5...flokli:nixos-20180326.patch;
-    })
-  ];
-
   nativeBuildInputs = [ qmake qttools ];
   buildInputs = [ apr.dev subversion.dev qtbase ];
 

pkgs/applications/virtualization/virtualbox/default.nix

@@ -65,7 +65,7 @@ in stdenv.mkDerivation {
     ++ optionals (headless) [ libXrandr ]
     ++ optionals (!headless) [ qt5.qtbase qt5.qtx11extras libXinerama SDL ];
 
-  hardeningDisable = [ "fortify" "pic" "stackprotector" ];
+  hardeningDisable = [ "format" "fortify" "pic" "stackprotector" ];
 
   prePatch = ''
     set -x

pkgs/build-support/cc-wrapper/default.nix

@@ -9,7 +9,7 @@
 , stdenvNoCC, nativeTools, propagateDoc ? !nativeTools, noLibc ? false, nativeLibc, nativePrefix ? ""
 , cc ? null, libc ? null, bintools, coreutils ? null, shell ? stdenvNoCC.shell
 , extraPackages ? [], extraBuildCommands ? ""
-, isGNU ? false, isClang ? cc.isClang or false, isCompilerRT ? false, gnugrep ? null
+, isGNU ? false, isClang ? cc.isClang or false, gnugrep ? null
 , buildPackages ? {}
 }:
 
@@ -90,7 +90,7 @@ stdenv.mkDerivation {
     # Binutils, and Apple's "cctools"; "bintools" as an attempt to find an
     # unused middle-ground name that evokes both.
     inherit bintools;
-    inherit libc nativeTools nativeLibc nativePrefix isGNU isClang isCompilerRT default_cxx_stdlib_compile;
+    inherit libc nativeTools nativeLibc nativePrefix isGNU isClang default_cxx_stdlib_compile;
 
     emacsBufferSetup = pkgs: ''
       ; We should handle propagation here too

pkgs/development/compilers/ghcjs-ng/default.nix

@@ -14,7 +14,9 @@
 , xorg
 , gmp
 , pkgconfig
+, gcc
 , lib
+, nodePackages
 , ghcjsDepOverrides ? (_:_:{})
 }:
 
@@ -40,6 +42,8 @@ let
     inherit (bootGhcjs) version;
     isGhcjs = true;
 
+    socket-io = nodePackages."socket.io";
+
     # Relics of the old GHCJS build system
     stage1Packages = [];
     mkStage2 = _: {};
@@ -49,7 +53,7 @@ let
   libexec =
     if builtins.compareVersions bootGhcjs.version "8.3" <= 0
       then "${bootGhcjs}/bin"
-      else "${bootGhcjs}/libexec/${stdenv.system}-${passthru.bootPkgs.ghc.name}/${bootGhcjs.name}";
+      else "${bootGhcjs}/libexec/${builtins.replaceStrings ["darwin"] ["osx"] stdenv.system}-${passthru.bootPkgs.ghc.name}/${bootGhcjs.name}";
 
 in stdenv.mkDerivation {
     name = "ghcjs";
@@ -63,6 +67,8 @@ in stdenv.mkDerivation {
       xorg.lndir
       gmp
       pkgconfig
+    ] ++ lib.optionals stdenv.isDarwin [
+      gcc # https://github.com/ghcjs/ghcjs/issues/663
     ];
     phases = ["unpackPhase" "buildPhase"];
     buildPhase = ''

pkgs/development/compilers/llvm/6/default.nix

@@ -38,10 +38,16 @@ let
 
     clang = if stdenv.cc.isGNU then tools.libstdcxxClang else tools.libcxxClang;
 
-    libstdcxxClang = wrapCCWith {
+    libstdcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
-      extraPackages = [ libstdcxxHook ];
+      extraPackages = [ libstdcxxHook targetLlvmLibraries.compiler-rt ];
-      extraBuildCommands = stdenv.lib.optionalString stdenv.targetPlatform.isLinux ''
+      extraBuildCommands = ''
+        rsrc="$out/resource-root"
+        mkdir "$rsrc"
+        ln -s "${cc}/lib/clang/${release_version}/include" "$rsrc"
+        ln -s "${targetLlvmLibraries.compiler-rt.out}/lib" "$rsrc/lib"
+        echo "-resource-dir=$rsrc" >> $out/nix-support/cc-cflags
+      '' + stdenv.lib.optionalString stdenv.targetPlatform.isLinux ''
         echo "--gcc-toolchain=${tools.clang-unwrapped.gcc}" >> $out/nix-support/cc-cflags
       '';
     };
@@ -53,7 +59,6 @@ let
         targetLlvmLibraries.libcxxabi
         targetLlvmLibraries.compiler-rt
       ];
-      isCompilerRT = true;
       extraBuildCommands = ''
         rsrc="$out/resource-root"
         mkdir "$rsrc"

pkgs/development/haskell-modules/configuration-common.nix

@@ -332,6 +332,7 @@ self: super: {
   hgdbmi = dontCheck super.hgdbmi;
   hi = dontCheck super.hi;
   hierarchical-clustering = dontCheck super.hierarchical-clustering;
+  hlibgit2 = disableHardening super.hlibgit2 [ "format" ];
   hmatrix-tests = dontCheck super.hmatrix-tests;
   hquery = dontCheck super.hquery;
   hs2048 = dontCheck super.hs2048;

pkgs/development/interpreters/racket/default.nix

@@ -58,7 +58,9 @@ stdenv.mkDerivation rec {
 
   preConfigure = ''
     unset AR
-    substituteInPlace src/configure --replace /usr/bin/uname ${coreutils}/bin/uname
+    for f in src/configure src/racket/src/string.c; do
+      substituteInPlace "$f" --replace /usr/bin/uname ${coreutils}/bin/uname
+    done
     mkdir src/build
     cd src/build
   '';

pkgs/development/libraries/gdk-pixbuf/default.nix

@@ -82,10 +82,14 @@ stdenv.mkDerivation rec {
       $dev/bin/gdk-pixbuf-query-loaders --update-cache
     '';
 
-  # The fixDarwinDylibNames hook doesn't patch binaries.
+  # The fixDarwinDylibNames hook doesn't patch library references or binaries.
   preFixup = stdenv.lib.optionalString stdenv.isDarwin ''
+    for f in $(find $out/lib -name '*.dylib'); do
+        install_name_tool -change @rpath/libgdk_pixbuf-2.0.0.dylib $out/lib/libgdk_pixbuf-2.0.0.dylib $f
+    done
+
     for f in $out/bin/* $dev/bin/*; do
-        install_name_tool -change "@rpath/libgdk_pixbuf-2.0.0.dylib" "$out/lib/libgdk_pixbuf-2.0.0.dylib" $f
+        install_name_tool -change @rpath/libgdk_pixbuf-2.0.0.dylib $out/lib/libgdk_pixbuf-2.0.0.dylib $f
     done
   '';
 

pkgs/development/libraries/physics/yoda/default.nix

@@ -23,6 +23,8 @@ stdenv.mkDerivation rec {
     done
   '';
 
+  hardeningDisable = [ "format" ];
+
   meta = {
     description = "Provides small set of data analysis (specifically histogramming) classes";
     license     = stdenv.lib.licenses.gpl2;

pkgs/development/libraries/zeroc-ice/default.nix

@@ -13,6 +13,8 @@ stdenv.mkDerivation rec {
     sha256 = "05xympbns32aalgcfcpxwfd7bvg343f16xpg6jv5s335ski3cjy2";
   };
 
+  patches = [ ./makefile.patch ];
+
   buildInputs = [ mcpp bzip2 expat openssl db5 ]
     ++ stdenv.lib.optionals stdenv.isDarwin [ darwin.cctools libiconv Security ];
 

pkgs/development/libraries/zeroc-ice/makefile.patch

@@ -0,0 +1,9 @@
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -77,4 +77,6 @@ FreezeScript: Freeze
+ Glacier2 IceGridLib Glacier2CryptPermissionsVerifier: Glacier2Lib
+ 
++Glacier2: IceSSL
++
+ IcePatch2: IcePatch2Lib
+ 

pkgs/development/python-modules/pdfminer_six/default.nix

@@ -0,0 +1,28 @@
+{ stdenv, buildPythonPackage, python, fetchFromGitHub, six, pycryptodome, chardet, nose, pytest }:
+
+buildPythonPackage rec {
+  pname = "pdfminer_six";
+  version = "20170720";
+
+  src = fetchFromGitHub {
+    owner = "pdfminer";
+    repo = "pdfminer.six";
+    rev = "${version}";
+    sha256 = "0vax5k0a8qn8x86ybpzqydk7x3hajsk8b6xf3y610j19mgag6wvs";
+  };
+
+  propagatedBuildInputs = [ six pycryptodome chardet ];
+  
+  checkInputs = [ nose pytest ];
+  checkPhase = ''
+    ${python.interpreter} -m pytest
+  '';
+
+  meta = with stdenv.lib; {
+    description = "fork of PDFMiner using six for Python 2+3 compatibility";
+    homepage = https://github.com/pdfminer/pdfminer.six;
+    license = licenses.mit;
+    maintainers = with maintainers; [ psyanticy ];
+  };
+}
+

pkgs/development/tools/continuous-integration/drone/default.nix

@@ -2,66 +2,25 @@
 
 buildGoPackage rec {
   name = "drone.io-${version}";
-  version = "0.5-20161104-${stdenv.lib.strings.substring 0 7 revision}";
+  version = "0.8.5-20180329-${stdenv.lib.strings.substring 0 7 revision}";
-  revision = "232df356afeeb4aec5e2959fa54b084dcadb267f";
+  revision = "81103a98208b0bfc76be5b07194f359fbc80183b";
   goPackagePath = "github.com/drone/drone";
 
   # These dependencies pulled (in `drone` buildprocess) via Makefile,
   # so I extracted them here, all revisions pinned by same date, as ${version}
-  extraSrcs = [ 
+  goDeps= ./deps.nix;
-    {
-      goPackagePath = "github.com/drone/drone-ui";
-      src = fetchFromGitHub {
-        owner = "drone";
-        repo = "drone-ui";
-        rev = "e66df33b4620917a2e7b59760887cc3eed543664";
-        sha256 = "0d50xdzkh9akpf5c0sqgcgy11v2vz858l36jp5snr94zkrdkv0n1";
-      };
-    }
-    {
-      goPackagePath = "github.com/drone/mq";
-      src = fetchFromGitHub {
-        owner = "drone";
-        repo = "mq";
-        rev = "0f296601feeed952dabd038793864acdbefe6dbe";
-        sha256 = "1k7439c90l4w29g7wyixfmpbkap7bn8yh8zynbjyjf9qjzwsnw97";
-      };
-    }
-    {
-      goPackagePath = "github.com/tidwall/redlog";
-      src = fetchFromGitHub {
-        owner = "tidwall";
-        repo = "redlog";
-        rev = "54086c8553cd23aba652513a87d2b085ea961541";
-        sha256 = "12a7mk6r8figjinzkbisxcaly6sasggy62m8zs4cf35lpq2lhffq";
-      };
-    }
-    {
-      goPackagePath = "golang.org/x/crypto";
-      src = fetchFromGitHub {
-        owner = "golang";
-        repo = "crypto";
-        rev = "9477e0b78b9ac3d0b03822fd95422e2fe07627cd";
-        sha256 = "1qcqai6nf1q50z9ga7r4ljnrh1qz49kwlcqpri4bknx732lqq0v5";
-      };
-    }
-  ];
-  nativeBuildInputs = [ go-bindata go-bindata-assetfs ];
 
-  preBuild = ''
+  nativeBuildInputs = [ go-bindata go-bindata-assetfs ];
-    go generate github.com/drone/drone/server/template
-    go generate github.com/drone/drone/store/datastore/ddl
-  '';
 
   src = fetchFromGitHub {
     owner = "drone";
     repo = "drone";
     rev = revision;
-    sha256 = "0xrijcrlv3ag9n2kywkrhdkxyhxc8fs6zqn0hyav6a6jpqnsahg3";
+    sha256 = "1890bwhxr62adv261v4kn1azhq7qvcj2zpll68i9nsvjib8a52bq";
   };
 
   meta = with stdenv.lib; {
-    maintainers = with maintainers; [ avnik ];
+    maintainers = with maintainers; [ avnik vdemeester ];
     license = licenses.asl20;
     description = "Continuous Integration platform built on container technology";
   };

pkgs/development/tools/continuous-integration/drone/deps.nix

@@ -0,0 +1,38 @@
+[
+  {
+    goPackagePath = "github.com/drone/drone-ui";
+    fetch = {
+      type = "git";
+      url = "https://github.com/drone/drone-ui";
+      rev = "5a497bd6cd5c3c17c53b00d40bcda1bf6f68f475";
+      sha256 = "1666xlz3dg468izfwprg17sgb3f4ppn5sj5klds3wgdfrjjm4v57";
+    };
+  }
+  {
+    goPackagePath = "github.com/drone/mq";
+    fetch = {
+      type = "git";
+      url = "https://github.com/drone/mq";
+      rev = "280af2a3b9c7d9ce90d625150dfff972c6c190b8";
+      sha256 = "10a24yq3ya8mvs7j6m7lqhyws7jd923rnih75ciq1g327qxf743s";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/net";
+    fetch = {
+      type = "git";
+      url = "https://github.com/golang/net";
+      rev = "dfa909b99c79129e1100513e5cd36307665e5723";
+      sha256 = "0nsansy1yqy1kzh5wpv3zi85s0chxfq0ha8knhgnfa0wj0k8q0il";
+    };
+  }
+  {
+    goPackagePath = "github.com/golang/protobuf";
+    fetch = {
+      type = "git";
+      url = "https://github.com/golang/protobuf";
+      rev = "b4deda0973fb4c70b50d226b1af49f3da59f5265";
+      sha256 = "0ya4ha7m20bw048m1159ppqzlvda4x0vdprlbk5sdgmy74h3xcdq";
+    };
+  }
+]

pkgs/games/spring/default.nix

@@ -1,18 +1,18 @@
 { stdenv, fetchurl, cmake, lzma, boost, libdevil, zlib, p7zip
 , openal, libvorbis, glew, freetype, xorg, SDL2, libGLU_combined, binutils
 , asciidoc, libxslt, docbook_xsl, docbook_xsl_ns, curl, makeWrapper
-, jdk ? null, python ? null, systemd, libunwind, glibc, which, minizip
+, jdk ? null, python ? null, systemd, libunwind, which, minizip
 , withAI ? true # support for AI Interfaces and Skirmish AIs
 }:
 
 stdenv.mkDerivation rec {
 
   name = "spring-${version}";
-  version = "103.0";
+  version = "104.0";
 
   src = fetchurl {
     url = "mirror://sourceforge/springrts/spring_${version}_src.tar.lzma";
-    sha256 = "1fmnwk8ig36429pkp1rafzg4hyzp7i6mwy27p7fdxrdj1q4blx9l";
+    sha256 = "05pclcbw7v481pqz7bgirlk37494hy4hx4jghhnlzhdaz1cvzc6f";
   };
 
   # The cmake included module correcly finds nix's glew, however
@@ -31,7 +31,7 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ cmake lzma boost libdevil zlib p7zip openal libvorbis freetype SDL2
     xorg.libX11 xorg.libXcursor libGLU_combined glew asciidoc libxslt docbook_xsl curl makeWrapper
-    docbook_xsl_ns systemd libunwind glibc.dev glibc.static which minizip ]
+    docbook_xsl_ns systemd libunwind which minizip ]
     ++ stdenv.lib.optional withAI jdk
     ++ stdenv.lib.optional withAI python;
 
@@ -50,6 +50,5 @@ stdenv.mkDerivation rec {
     license = licenses.gpl2;
     maintainers = [ maintainers.phreedom maintainers.qknight maintainers.domenkozar ];
     platforms = platforms.linux;
-    broken = true;
   };
 }

pkgs/misc/drivers/sc-controller/default.nix

@@ -7,13 +7,13 @@
 
 buildPythonApplication rec {
   pname = "sc-controller";
-  version = "0.4.2";
+  version = "0.4.3";
 
   src = fetchFromGitHub {
     owner  = "kozec";
     repo   = pname;
     rev    = "v${version}";
-    sha256 = "19i9z5cjjgi3a94hrz5g3a6m4vj71p1gs6mhklc6dq8ydwsadwzz";
+    sha256 = "0w4ykl78vdppqr3d4d0h1f31wly6kis57a1gxhnrbpfrgpj0qhvj";
   };
 
   nativeBuildInputs = [ wrapGAppsHook ];

pkgs/os-specific/linux/bcc/default.nix

@@ -1,9 +1,9 @@
 { stdenv, fetchFromGitHub, fetchpatch, makeWrapper, cmake, llvmPackages, kernel
-, flex, bison, elfutils, python, pythonPackages, luajit, netperf, iperf, libelf
+, flex, bison, elfutils, python, luajit, netperf, iperf, libelf
 , systemtap
 }:
 
-stdenv.mkDerivation rec {
+python.pkgs.buildPythonApplication rec {
   version = "0.5.0";
   name = "bcc-${version}";
 
@@ -14,9 +14,11 @@ stdenv.mkDerivation rec {
     sha256 = "0bb3244xll5sqx0lvrchg71qy2zg0yj6r5h4v5fvrg1fjhaldys9";
   };
 
+  format = "other";
+
   buildInputs = [
     llvmPackages.llvm llvmPackages.clang-unwrapped kernel
-    elfutils python pythonPackages.netaddr luajit netperf iperf
+    elfutils luajit netperf iperf
     systemtap.stapBuild
   ];
 
@@ -26,18 +28,31 @@ stdenv.mkDerivation rec {
       url = "https://github.com/iovisor/bcc/commit/bd7fa55bb39b8978dafd0b299e35616061e0a368.patch";
       sha256 = "1sgxhsq174iihyk1x08py73q8fh78d7y3c90k5nh8vcw2pf1xbnf";
     })
+
+    # This is needed until we fix
+    # https://github.com/NixOS/nixpkgs/issues/40427
+    ./fix-deadlock-detector-import.patch
   ];
 
   nativeBuildInputs = [ makeWrapper cmake flex bison ]
     # libelf is incompatible with elfutils-libelf
     ++ stdenv.lib.filter (x: x != libelf) kernel.moduleBuildDependencies;
 
-  cmakeFlags =
+  cmakeFlags = [
-    [ "-DBCC_KERNEL_MODULES_DIR=${kernel.dev}/lib/modules"
+    "-DBCC_KERNEL_MODULES_DIR=${kernel.dev}/lib/modules"
-      "-DREVISION=${version}"
+    "-DREVISION=${version}"
-      "-DENABLE_USDT=ON"
+    "-DENABLE_USDT=ON"
-      "-DENABLE_CPP_API=ON"
+    "-DENABLE_CPP_API=ON"
-    ];
+  ];
+
+  postPatch = ''
+    substituteAll ${./libbcc-path.patch} ./libbcc-path.patch
+    patch -p1 < libbcc-path.patch
+  '';
+
+  propagatedBuildInputs = [
+    python.pkgs.netaddr
+  ];
 
   postInstall = ''
     mkdir -p $out/bin $out/share
@@ -47,12 +62,17 @@ stdenv.mkDerivation rec {
 
     find $out/share/bcc/tools -type f -executable -print0 | \
     while IFS= read -r -d ''$'\0' f; do
-      pythonLibs="$out/lib/python2.7/site-packages:${pythonPackages.netaddr}/lib/${python.libPrefix}/site-packages"
+      bin=$out/bin/$(basename $f)
-      rm -f $out/bin/$(basename $f)
+      if [ ! -e $bin ]; then
-      makeWrapper $f $out/bin/$(basename $f) \
+        ln -s $f $bin
-        --prefix LD_LIBRARY_PATH : $out/lib \
+      fi
-        --prefix PYTHONPATH : "$pythonLibs"
     done
+
+    sed -i -e "s!lib=.*!lib=$out/bin!" $out/bin/{java,ruby,node,python}gc
+  '';
+
+  postFixup = ''
+    wrapPythonProgramsIn "$out/share/bcc/tools" "$out $pythonPath"
   '';
 
   meta = with stdenv.lib; {

pkgs/os-specific/linux/bcc/fix-deadlock-detector-import.patch

@@ -0,0 +1,14 @@
+--- source.org/tools/deadlock_detector.py	1980-01-02 00:00:00.000000000 +0000
++++ source/tools/deadlock_detector.py	2018-05-29 13:57:11.807126673 +0100
+@@ -44,9 +44,8 @@
+ #
+ # 01-Feb-2017   Kenny Yu   Created this.
+ 
+-from __future__ import (
+-    absolute_import, division, unicode_literals, print_function
+-)
++from __future__ import absolute_import, division, unicode_literals, print_function
++
+ from bcc import BPF
+ from collections import defaultdict
+ import argparse

pkgs/os-specific/linux/bcc/libbcc-path.patch

@@ -0,0 +1,11 @@
+--- source.org/src/python/bcc/libbcc.py	2018-05-13 08:35:06.850522883 +0100
++++ source/src/python/bcc/libbcc.py	2018-05-13 08:36:24.602733151 +0100
+@@ -14,7 +14,7 @@
+ 
+ import ctypes as ct
+ 
+-lib = ct.CDLL("libbcc.so.0", use_errno=True)
++lib = ct.CDLL("@out@/lib/libbcc.so.0", use_errno=True)
+ 
+ # keep in sync with bpf_common.h
+ lib.bpf_module_create_b.restype = ct.c_void_p

pkgs/test/cc-wrapper/default.nix

@@ -38,11 +38,9 @@ stdenv.mkDerivation {
 
     NIX_LDFLAGS="-L$NIX_BUILD_TOP/foo/lib -rpath $NIX_BUILD_TOP/foo/lib" $CC -lfoo -o ldflags-check ${./ldflags-main.c}
     ./ldflags-check
-  '' + stdenv.lib.optionalString (stdenv.cc.isCompilerRT or false) ''
 
     $CC -o sanitizers -fsanitize=address,undefined ${./sanitizers.c}
     ./sanitizers
-  '' + ''
 
     touch $out
   '';

pkgs/tools/text/kytea/default.nix

@@ -10,6 +10,8 @@ stdenv.mkDerivation rec {
     sha256 = "0ilzzwn5vpvm65bnbyb9f5rxyxy3jmbafw9w0lgl5iad1ka36jjk";
   };
 
+  patches = [ ./gcc-O3.patch ];
+
   meta = with stdenv.lib; {
     homepage = http://www.phontron.com/kytea/;
     description = "General toolkit developed for analyzing text";

pkgs/tools/text/kytea/gcc-O3.patch

@@ -0,0 +1,13 @@
+diff --git a/src/lib/kytea-util.cpp b/src/lib/kytea-util.cpp
+index 7c8c4c6..4492df1 100644
+--- a/src/lib/kytea-util.cpp
++++ b/src/lib/kytea-util.cpp
+@@ -49,5 +49,8 @@ void checkValueVecEqual(const std::vector<T> * a, const std::vector<T> * b) {
+ 
++template void checkValueVecEqual(const std::vector<unsigned int> & a, const std::vector<unsigned int> & b);
+ template void checkValueVecEqual(const std::vector<unsigned int> * a, const std::vector<unsigned int> * b);
++template void checkValueVecEqual(const std::vector<short> & a, const std::vector<short> & b);
+ template void checkValueVecEqual(const std::vector<short> * a, const std::vector<short> * b);
+ template void checkValueVecEqual(const std::vector<vector<KyteaString> > * a, const std::vector<vector<KyteaString> > * b);
++template void checkValueVecEqual(const std::vector<int> & a, const std::vector<int> & b);
+ template void checkValueVecEqual(const std::vector<int> * a, const std::vector<int> * b);

pkgs/top-level/all-packages.nix

@@ -13548,7 +13548,9 @@ with pkgs;
 
     batman_adv = callPackage ../os-specific/linux/batman-adv {};
 
-    bcc = callPackage ../os-specific/linux/bcc { };
+    bcc = callPackage ../os-specific/linux/bcc {
+      python = python3;
+    };
 
     bbswitch = callPackage ../os-specific/linux/bbswitch {};
 
@@ -16257,8 +16259,7 @@ with pkgs;
 
   hydrogen = callPackage ../applications/audio/hydrogen { };
 
-  hyper = callPackage ../applications/misc/hyper { inherit (gnome2) GConf; };
+  hyper = callPackage ../applications/misc/hyper { };
-  hyperterm = self.hyper;
 
   hyper-haskell-server-with-packages = callPackage ../development/tools/haskell/hyper-haskell/server.nix {
     inherit (haskellPackages) ghcWithPackages;
@@ -21403,7 +21404,6 @@ with pkgs;
   ghc-standalone-archive = callPackage ../os-specific/darwin/ghc-standalone-archive { inherit (darwin) cctools; };
 
   chrome-gnome-shell = callPackage  ../desktops/gnome-3/extensions/chrome-gnome-shell {};
-  messenger-for-desktop = callPackage ../applications/networking/instant-messengers/messenger-for-desktop {};
 
   NSPlist = callPackage ../development/libraries/NSPlist {};
 

pkgs/top-level/dotnet-packages.nix

@@ -328,11 +328,23 @@ let self = dotnetPackages // overrides; dotnetPackages = with self; {
     postInstall = ''
         mkdir -pv "$out/lib/dotnet/${baseName}"
         ln -sv "${pkgs.z3}/bin/z3" "$out/lib/dotnet/${baseName}/z3.exe"
+
+        # so that this derivation can be used as a vim plugin to install syntax highlighting
+        vimdir=$out/share/vim-plugins/boogie
+        install -Dt $vimdir/syntax/ Util/vim/syntax/boogie.vim
+        mkdir $vimdir/ftdetect
+        echo 'au BufRead,BufNewFile *.bpl set filetype=boogie' > $vimdir/ftdetect/bpl.vim
     '';
 
     meta = with stdenv.lib; {
       description = "An intermediate verification language";
       homepage = "https://github.com/boogie-org/boogie";
+      longDescription = ''
+        Boogie is an intermediate verification language (IVL), intended as a
+        layer on which to build program verifiers for other languages.
+
+        This derivation may be used as a vim plugin to provide syntax highlighting.
+      '';
       license = licenses.mspl;
       maintainers = [ maintainers.taktoa ];
       platforms = with platforms; (linux ++ darwin);

pkgs/top-level/haskell-packages.nix

@@ -159,13 +159,13 @@ in rec {
     ghcjs = packages.ghcjs82;
     ghcjs710 = callPackage ../development/haskell-modules rec {
       buildHaskellPackages = ghc.bootPkgs;
-      ghc = bh.compiler.ghcjs;
+      ghc = bh.compiler.ghcjs710;
       compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-7.10.x.nix { };
       packageSetConfig = callPackage ../development/haskell-modules/configuration-ghcjs.nix { };
     };
     ghcjs80 = callPackage ../development/haskell-modules rec {
       buildHaskellPackages = ghc.bootPkgs;
-      ghc = bh.compiler.ghcjsHEAD;
+      ghc = bh.compiler.ghcjs80;
       compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.0.x.nix { };
       packageSetConfig = callPackage ../development/haskell-modules/configuration-ghcjs.nix { };
     };

pkgs/top-level/python-packages.nix

@@ -311,6 +311,8 @@ in {
 
   outcome = callPackage ../development/python-modules/outcome {};
 
+  pdfminer = callPackage ../development/python-modules/pdfminer_six { };
+
   plantuml = callPackage ../tools/misc/plantuml { };
 
   Pmw = callPackage ../development/python-modules/Pmw { };
@@ -1323,7 +1325,7 @@ in {
     #setupPyBuildFlags = [ "--berkeley-db=${pkgs.db}" ];
     # We can also use a variable
     preConfigure = ''
-      export BERKELEYDB_DIR=${pkgs.db};
+      export BERKELEYDB_DIR=${pkgs.db.dev};
     '';
 
     meta = {
@@ -3791,28 +3793,6 @@ in {
     };
   };
 
-
-  pdfminer = buildPythonPackage rec {
-    version = "20140328";
-    name = "pdfminer-${version}";
-
-    disabled = ! isPy27;
-
-    src = pkgs.fetchurl {
-      url = "mirror://pypi/p/pdfminer/pdfminer-${version}.tar.gz";
-      sha256 = "0qpjv4b776dwvpf5a7v19g41qsz97bv0qqsyvm7a31k50n9pn65s";
-    };
-
-    propagatedBuildInputs = with self; [  ];
-
-    meta = {
-      description = "Tool for extracting information from PDF documents";
-      homepage = http://euske.github.io/pdfminer/index.html;
-      license = licenses.mit;
-      maintainers = with maintainers; [ ];
-    };
-  };
-
   peppercorn = buildPythonPackage rec {
     name = "peppercorn-0.5";