From 9745611ed6464998f56b6fb25fdf7216b29a38c2 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Wed, 8 Aug 2018 00:40:23 -0400
Subject: [PATCH 001/294] lammps: 16Feb16 -> patch_2Aug2018

Major changes and update to lammps build

 - using fetchFromGitHub to get source instead of lammps mirror
 - configurable lammps packages included and includes for compilation
 - cleaner build script
 - preserving the executable, shared library names, and include headers
---
 .../molecular-dynamics/lammps/default.nix     | 45 +++++++++++++------
 1 file changed, 32 insertions(+), 13 deletions(-)

diff --git a/pkgs/applications/science/molecular-dynamics/lammps/default.nix b/pkgs/applications/science/molecular-dynamics/lammps/default.nix
index 9a89b88d7a5..03e37ad9d93 100644
--- a/pkgs/applications/science/molecular-dynamics/lammps/default.nix
+++ b/pkgs/applications/science/molecular-dynamics/lammps/default.nix
@@ -1,25 +1,37 @@
-{ stdenv, writeText, fetchurl,
-  libpng, fftw,
-  mpiSupport ? false, mpi ? null
+{ lib
+, bash
+, stdenv
+, writeText
+, fetchFromGitHub
+, libpng
+, gzip
+, fftw
+, openblas
+, mpiSupport ? false, mpi ? null
 }:
 
 assert mpiSupport -> mpi != null;
 
 stdenv.mkDerivation rec {
   # LAMMPS has weird versioning converted to ISO 8601 format
-  version = "2016-02-16";
+  version = "patch_2Aug2018";
   name = "lammps-${version}";
 
-  src = fetchurl {
-    url = "mirror://sourceforge/lammps/lammps-16Feb16.tar.gz";
-    sha256 = "1yzfbkxma3xa1288rnn66h4w0smbmjkwq1fx1y60pjiw0prmk105";
+  lammps_packages = "asphere body class2 colloid compress coreshell dipole granular kspace manybody mc misc molecule opt peri qeq replica rigid shock snap srd user-reaxc";
+  lammps_includes = "-DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64";
+
+  src = fetchFromGitHub {
+    owner = "lammps";
+    repo = "lammps";
+    rev = "${version}";
+    sha256 = "1ph9pr7s11wgmspmnhxa55bh1pq2cyl8iimfi62lbpbpl9pr1ilc";
   };
 
   passthru = {
     inherit mpi;
   };
 
-  buildInputs = [ fftw libpng ]
+  buildInputs = [ fftw libpng openblas gzip bash ]
   ++ (stdenv.lib.optionals mpiSupport [ mpi ]);
 
   # Must do manual build due to LAMMPS requiring a seperate build for
@@ -27,13 +39,19 @@ stdenv.mkDerivation rec {
   builder = writeText "builder.sh" ''
     source $stdenv/setup
 
-    tar xzf $src
-    cd lammps-*/src
-    make mode=exe ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="-DLAMMPS_GZIP -DLAMMPS_PNG" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng
-    make mode=shlib ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="-DLAMMPS_GZIP -DLAMMPS_PNG" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng
+    mkdir lammps
+    cp -r $src/lib $src/src lammps
+    chmod -R 755 lammps/src/
+    cd lammps/src
+    for pack in ${lammps_packages}; do make "yes-$pack" SHELL=$SHELL; done
+    make mode=exe ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng
+    make mode=shlib ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng
 
     mkdir -p $out/bin
-    cp -v lmp_* $out/bin/lammps
+    cp -v lmp_* $out/bin/
+
+    mkdir -p $out/include
+    cp -v *.h $out/include/
 
     mkdir -p $out/lib
     cp -v liblammps* $out/lib/
@@ -51,5 +69,6 @@ stdenv.mkDerivation rec {
     homepage = http://lammps.sandia.gov;
     license = stdenv.lib.licenses.gpl2;
     platforms = stdenv.lib.platforms.linux;
+    maintainers = with lib.maintainers; [ costrouc ];
   };
 }

From 90c353d44e6c89cb77d05e5452120386b65fc919 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:36:50 -0400
Subject: [PATCH 002/294] pythonPackages.py-cpuinfo: init at 4.0.0

 - fetchFromGitHub to run all tests
 - all tests pass
---
 .../python-modules/py-cpuinfo/default.nix     | 23 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/development/python-modules/py-cpuinfo/default.nix

diff --git a/pkgs/development/python-modules/py-cpuinfo/default.nix b/pkgs/development/python-modules/py-cpuinfo/default.nix
new file mode 100644
index 00000000000..37cf601695e
--- /dev/null
+++ b/pkgs/development/python-modules/py-cpuinfo/default.nix
@@ -0,0 +1,23 @@
+{ lib
+, fetchFromGitHub
+, buildPythonPackage
+}:
+
+buildPythonPackage rec {
+  pname = "py-cpuinfo";
+  version = "4.0.0";
+
+  src = fetchFromGitHub {
+     owner = "workhorsy";
+     repo = pname;
+     rev = "v${version}";
+     sha256 = "1pp561lj80jnvr2038nrzhmks2akxsbdqxvfrqa6n340x81981lm";
+  };
+
+  meta = {
+    description = "Get CPU info with pure Python 2 & 3";
+    homepage = https://github.com/workhorsy/py-cpuinfo;
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index af1895d9d14..c28a824ae34 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -384,6 +384,8 @@ in {
 
   PyChromecast = callPackage ../development/python-modules/pychromecast { };
 
+  py-cpuinfo = callPackage ../development/python-modules/py-cpuinfo { };
+
   pydbus = callPackage ../development/python-modules/pydbus { };
 
   pydocstyle = callPackage ../development/python-modules/pydocstyle { };

From 6e9d37713a867946d299491d241ce16a815dd539 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:37:45 -0400
Subject: [PATCH 003/294] pythonPackages.statistics: init at 1.0.3.5

 - package does not come with tests
---
 .../python-modules/statistics/default.nix     | 27 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/development/python-modules/statistics/default.nix

diff --git a/pkgs/development/python-modules/statistics/default.nix b/pkgs/development/python-modules/statistics/default.nix
new file mode 100644
index 00000000000..4380e592ff5
--- /dev/null
+++ b/pkgs/development/python-modules/statistics/default.nix
@@ -0,0 +1,27 @@
+{ lib
+, fetchPypi
+, buildPythonPackage
+, docutils
+}:
+
+buildPythonPackage rec {
+  pname = "statistics";
+  version = "1.0.3.5";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "2dc379b80b07bf2ddd5488cad06b2b9531da4dd31edb04dc9ec0dc226486c138";
+  };
+
+  propagatedBuildInputs = [ docutils ];
+
+  # statistics package does not have any tests
+  doCheck = false;
+
+  meta = {
+    description = "A Python 2.* port of 3.4 Statistics Module";
+    homepage = https://github.com/digitalemagine/py-statistics;
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index c28a824ae34..fdf3e91cbb9 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -509,6 +509,8 @@ in {
 
   spglib = callPackage ../development/python-modules/spglib { };
 
+  statistics = callPackage ../development/python-modules/statistics { };
+
   sumo = callPackage ../development/python-modules/sumo { };
 
   supervise_api = callPackage ../development/python-modules/supervise_api { };

From eb6e376753619cb1fcb57e3ef2075e836ec9dd3e Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:38:38 -0400
Subject: [PATCH 004/294] pythonPackages.pytest-benchmark: init at 3.1.1

 - fetchFromGitHub to get all tests
 - all tests pass
 - python 2.7, 3+
---
 .../pytest-benchmark/default.nix              | 31 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 33 insertions(+)
 create mode 100644 pkgs/development/python-modules/pytest-benchmark/default.nix

diff --git a/pkgs/development/python-modules/pytest-benchmark/default.nix b/pkgs/development/python-modules/pytest-benchmark/default.nix
new file mode 100644
index 00000000000..0f3475f715d
--- /dev/null
+++ b/pkgs/development/python-modules/pytest-benchmark/default.nix
@@ -0,0 +1,31 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pytestrunner
+, pytest
+, py-cpuinfo
+, pythonOlder
+, pathlib
+, statistics
+}:
+
+buildPythonPackage rec {
+  pname = "pytest-benchmark";
+  version = "3.1.1";
+
+  src = fetchFromGitHub {
+    owner = "ionelmc";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1ch079dlc6c9ag74dh4dg6plkmh0h8kn78ari3fgadc75bald71m";
+  };
+
+  propagatedBuildInputs = [ pytest py-cpuinfo ] ++ lib.optional (pythonOlder "3.4") [ pathlib statistics ];
+
+  meta = {
+    description = "Py.test fixture for benchmarking code";
+    homepage = https://github.com/ionelmc/pytest-benchmark;
+    license = lib.licenses.bsd2;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index fdf3e91cbb9..c2a1237e4e9 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1844,6 +1844,8 @@ in {
 
   pytest-aiohttp = callPackage ../development/python-modules/pytest-aiohttp { };
 
+  pytest-benchmark = callPackage ../development/python-modules/pytest-benchmark { };
+
   pytestcache = callPackage ../development/python-modules/pytestcache { };
 
   pytest-catchlog = callPackage ../development/python-modules/pytest-catchlog { };

From da136c461865d29d6502c7b4b347552c81185ac3 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:39:53 -0400
Subject: [PATCH 005/294] pythonPackages.docutils: refactored

 - moved docutils to `python-modules`
---
 .../python-modules/docutils/default.nix       | 35 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            | 33 ++---------------
 2 files changed, 37 insertions(+), 31 deletions(-)
 create mode 100644 pkgs/development/python-modules/docutils/default.nix

diff --git a/pkgs/development/python-modules/docutils/default.nix b/pkgs/development/python-modules/docutils/default.nix
new file mode 100644
index 00000000000..c31cfceebba
--- /dev/null
+++ b/pkgs/development/python-modules/docutils/default.nix
@@ -0,0 +1,35 @@
+{ lib
+, fetchurl
+, buildPythonPackage
+, isPy3k
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "docutils";
+  version = "0.14";
+
+  src = fetchurl {
+    url = "mirror://sourceforge/docutils/${pname}.tar.gz";
+    sha256 = "0x22fs3pdmr42kvz6c654756wja305qv6cx1zbhwlagvxgr4xrji";
+  };
+
+  checkPhase = if isPy3k then ''
+    ${python.interpreter} test3/alltests.py
+  '' else ''
+    ${python.interpreter} test/alltests.py
+  '';
+
+  # Create symlinks lacking a ".py" suffix, many programs depend on these names
+  postFixup = ''
+    (cd $out/bin && for f in *.py; do
+      ln -s $f $(echo $f | sed -e 's/\.py$//')
+    done)
+  '';
+
+  meta = {
+    description = "Docutils -- Python Documentation Utilities";
+    homepage = http://docutils.sourceforge.net/;
+    maintainers = with lib.maintainers; [ garbas AndersonTorres ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index c2a1237e4e9..8e9ff72c752 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -272,6 +272,8 @@ in {
 
   distorm3 = callPackage ../development/python-modules/distorm3 { };
 
+  docutils = callPackage ../development/python-modules/docutils { };
+
   dogtail = callPackage ../development/python-modules/dogtail { };
 
   diff-match-patch = callPackage ../development/python-modules/diff-match-patch { };
@@ -5006,37 +5008,6 @@ in {
     };
   };
 
-
-  docutils = buildPythonPackage rec {
-    name = "docutils-${version}";
-    version = "0.14";
-
-    src = pkgs.fetchurl {
-      url = "mirror://sourceforge/docutils/${name}.tar.gz";
-      sha256 = "0x22fs3pdmr42kvz6c654756wja305qv6cx1zbhwlagvxgr4xrji";
-    };
-
-    checkPhase = if isPy3k then ''
-      ${python.interpreter} test3/alltests.py
-    '' else ''
-      ${python.interpreter} test/alltests.py
-    '';
-
-    # Create symlinks lacking a ".py" suffix, many programs depend on these names
-    postFixup = ''
-      (cd $out/bin && for f in *.py; do
-        ln -s $f $(echo $f | sed -e 's/\.py$//')
-      done)
-    '';
-
-    meta = {
-      description = "An open-source text processing system for processing plaintext documentation into useful formats, such as HTML or LaTeX";
-      homepage = http://docutils.sourceforge.net/;
-      maintainers = with maintainers; [ garbas AndersonTorres ];
-    };
-  };
-
-
   dtopt = buildPythonPackage rec {
     name = "dtopt-0.1";
 

From 0513a0054dc5e0953cc5123ef1ac11707b059aaf Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:40:45 -0400
Subject: [PATCH 006/294] pythonPackages.pathlib: init at 1.0.1

 - python 2.7, 3+
 - all tests pass
 - package is depricated but is required by a package
---
 .../python-modules/pathlib/default.nix        | 28 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            | 23 ++-------------
 2 files changed, 30 insertions(+), 21 deletions(-)
 create mode 100644 pkgs/development/python-modules/pathlib/default.nix

diff --git a/pkgs/development/python-modules/pathlib/default.nix b/pkgs/development/python-modules/pathlib/default.nix
new file mode 100644
index 00000000000..d70178dac85
--- /dev/null
+++ b/pkgs/development/python-modules/pathlib/default.nix
@@ -0,0 +1,28 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, python
+, pythonAtLeast
+}:
+
+buildPythonPackage rec {
+  pname = "pathlib";
+  version = "1.0.1";
+  disabled = pythonAtLeast "3.4"; # Was added to std library in Python 3.4
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "17zajiw4mjbkkv6ahp3xf025qglkj0805m9s41c45zryzj6p2h39";
+  };
+
+  checkPhase = ''
+    ${python.interpreter} -m unittest discover
+  '';
+
+  meta = {
+    description = "Object-oriented filesystem paths";
+    homepage = https://pathlib.readthedocs.org/;
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 8e9ff72c752..c8b4a8ace41 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -344,6 +344,8 @@ in {
 
   palettable = callPackage ../development/python-modules/palettable { };
 
+  pathlib = callPackage ../development/python-modules/pathlib { };
+
   pdf2image = callPackage ../development/python-modules/pdf2image { };
 
   pdfminer = callPackage ../development/python-modules/pdfminer_six { };
@@ -9458,27 +9460,6 @@ in {
 
   patator = callPackage ../development/python-modules/patator { };
 
-  pathlib = buildPythonPackage rec {
-    name = "pathlib-${version}";
-    version = "1.0.1";
-    disabled = pythonAtLeast "3.4"; # Was added to std library in Python 3.4
-
-    src = pkgs.fetchurl {
-      url = "mirror://pypi/p/pathlib/${name}.tar.gz";
-      sha256 = "17zajiw4mjbkkv6ahp3xf025qglkj0805m9s41c45zryzj6p2h39";
-    };
-
-    checkPhase = ''
-      ${python.interpreter} -m unittest discover
-    '';
-
-    meta = {
-      description = "Object-oriented filesystem paths";
-      homepage = "https://pathlib.readthedocs.org/";
-      license = licenses.mit;
-    };
-  };
-
   pathlib2 = callPackage ../development/python-modules/pathlib2 { };
 
   pathpy = callPackage ../development/python-modules/path.py { };

From 4716facdd18213e1627b0610ef226965ec709cf8 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:41:46 -0400
Subject: [PATCH 007/294] pythonPackage.ase: init at 3.16.2

 - tests just hang so skipping tests
 - python 2.7, 3+
 - repository is in gitlab so had to fetchurl
---
 .../python-modules/ase/default.nix            | 36 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 38 insertions(+)
 create mode 100644 pkgs/development/python-modules/ase/default.nix

diff --git a/pkgs/development/python-modules/ase/default.nix b/pkgs/development/python-modules/ase/default.nix
new file mode 100644
index 00000000000..1f7b9419278
--- /dev/null
+++ b/pkgs/development/python-modules/ase/default.nix
@@ -0,0 +1,36 @@
+{ lib
+, fetchurl
+, buildPythonPackage
+, numpy
+, scipy
+, matplotlib
+, flask
+, pillow
+, psycopg2
+}:
+
+buildPythonPackage rec {
+  version = "3.16.2";
+  pname = "ase";
+
+  src = fetchurl {
+     url = "https://gitlab.com/${pname}/${pname}/-/archive/${version}/${pname}-${version}.tar.gz";
+     sha256 = "171j3f4a261cfnqjq98px5fldxql65i3jgf60wc945xvh0mbc8ds";
+  };
+
+  propagatedBuildInputs = [ numpy scipy matplotlib flask pillow psycopg2 ];
+
+  checkPhase = ''
+    $out/bin/ase test
+  '';
+
+  # tests just hang most likely due to something with subprocesses and cli
+  doCheck = false;
+
+  meta = {
+    description = "Atomic Simulation Environment";
+    homepage = https://wiki.fysik.dtu.dk/ase/;
+    license = lib.licenses.lgpl21Plus;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index c8b4a8ace41..d48741ce8a4 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -182,6 +182,8 @@ in {
 
   asana = callPackage ../development/python-modules/asana { };
 
+  ase = callPackage ../development/python-modules/ase { };
+
   asn1crypto = callPackage ../development/python-modules/asn1crypto { };
 
   aspy-yaml = callPackage ../development/python-modules/aspy.yaml { };

From def307e476da03fa282633abfabfb45578700347 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:42:52 -0400
Subject: [PATCH 008/294] pagmo2: init at 2.8

 - c++ headers for library
 - parallel optimization framework
 - all tests but 1/55 pass so skipping tests
---
 pkgs/development/libraries/pagmo2/default.nix | 46 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 48 insertions(+)
 create mode 100644 pkgs/development/libraries/pagmo2/default.nix

diff --git a/pkgs/development/libraries/pagmo2/default.nix b/pkgs/development/libraries/pagmo2/default.nix
new file mode 100644
index 00000000000..367cef46dc4
--- /dev/null
+++ b/pkgs/development/libraries/pagmo2/default.nix
@@ -0,0 +1,46 @@
+{ lib
+, fetchFromGitHub
+, stdenv
+, cmake
+, eigen
+, nlopt
+, ipopt
+, boost
+, writeText
+}:
+
+stdenv.mkDerivation rec {
+  name = "pagmo2-${version}";
+  version = "2.8";
+
+  src = fetchFromGitHub {
+     owner = "esa";
+     repo = "pagmo2";
+     rev = "v${version}";
+     sha256 = "1xwxamcn3fkwr62jn6bkanrwy0cvsksf75hfwx4fvl56awnbz41z";
+  };
+
+  buildInputs = [ cmake eigen nlopt ipopt boost ];
+
+  preBuild = ''
+    cp -r $src/* .
+  '';
+
+  cmakeFlags = [ "-DPAGMO_BUILD_TESTS=no"
+                 "-DPAGMO_WITH_EIGEN3=yes" "-DPAGMO_WITH_NLOPT=yes"
+                 "-DNLOPT_LIBRARY=${nlopt}/lib/libnlopt_cxx.so" "-DPAGMO_WITH_IPOPT=yes"
+                 "-DCMAKE_CXX_FLAGS='-fuse-ld=gold'" ];
+
+  checkPhase = ''
+    ctest
+  '';
+
+  # All but one test pass skip for now (tests also take about 30 min to compile)
+  doCheck = false;
+
+  meta = {
+    homepage = https://esa.github.io/pagmo2/;
+    description = "Scientific library for massively parallel optimization";
+    license = stdenv.lib.licenses.gpl3Plus;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 1340020d5b9..a4a6f2cbd66 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4419,6 +4419,8 @@ with pkgs;
 
   padthv1 = callPackage ../applications/audio/padthv1 { };
 
+  pagmo2 = callPackage ../development/libraries/pagmo2 { };
+
   pakcs = callPackage ../development/compilers/pakcs {};
 
   pal = callPackage ../tools/misc/pal { };

From ff27546351e00f62dd21d0334a0df2279160d084 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:43:58 -0400
Subject: [PATCH 009/294] pythonPackages.pygmo: init at 2.8

 - python 2.7, 3+
 - skipping tests becuase none are easy to run (require some parallel workers)
 - fetchFromgitHub so that running tests in future is possible
---
 .../python-modules/pygmo/default.nix          | 48 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 +
 2 files changed, 50 insertions(+)
 create mode 100644 pkgs/development/python-modules/pygmo/default.nix

diff --git a/pkgs/development/python-modules/pygmo/default.nix b/pkgs/development/python-modules/pygmo/default.nix
new file mode 100644
index 00000000000..2500121dc9e
--- /dev/null
+++ b/pkgs/development/python-modules/pygmo/default.nix
@@ -0,0 +1,48 @@
+{ lib
+, fetchFromGitHub
+, buildPythonPackage
+, cmake
+, eigen
+, nlopt
+, ipopt
+, boost
+, pagmo2
+, numpy
+, cloudpickle
+, ipyparallel
+, numba
+}:
+
+buildPythonPackage rec {
+  pname = "pygmo";
+  version = "2.8";
+
+  src = fetchFromGitHub {
+     owner = "esa";
+     repo = "pagmo2";
+     rev = "v${version}";
+     sha256 = "1xwxamcn3fkwr62jn6bkanrwy0cvsksf75hfwx4fvl56awnbz41z";
+  };
+
+  buildInputs = [ cmake eigen nlopt ipopt boost pagmo2 ];
+  propagatedBuildInputs = [ numpy cloudpickle ipyparallel numba ];
+
+  preBuild = ''
+    cp -v -r $src/* .
+    cmake -DCMAKE_INSTALL_PREFIX=$out -DPAGMO_BUILD_TESTS=no -DCMAKE_SYSTEM_NAME=Linux -DPagmo_DIR=${pagmo2} -DPAGMO_BUILD_PYGMO=yes -DPAGMO_BUILD_PAGMO=no -DPAGMO_WITH_EIGEN3=yes -DPAGMO_WITH_NLOPT=yes -DNLOPT_LIBRARY=${nlopt}/lib/libnlopt_cxx.so -DPAGMO_WITH_IPOPT=yes -DIPOPT=${ipopt}
+
+    make install
+    mv $out/lib/python*/site-packages/pygmo wheel
+    cd wheel
+  '';
+
+  # dont do tests
+  doCheck = false;
+
+  meta = {
+    description = "Parallel optimisation for Python";
+    homepage = https://esa.github.io/pagmo2/;
+    license = lib.licenses.gpl3Plus;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index d48741ce8a4..8399005534f 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -408,6 +408,8 @@ in {
 
   pygame_sdl2 = callPackage ../development/python-modules/pygame_sdl2 { };
 
+  pygmo = callPackage ../development/python-modules/pygmo { };
+
   pygobject2 = callPackage ../development/python-modules/pygobject { };
 
   pygobject3 = callPackage ../development/python-modules/pygobject/3.nix { };

From fb40e62657337f254dcf28157765d86cb60e2183 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:45:38 -0400
Subject: [PATCH 010/294] pythonPackages.pymatgen-lammps: init at 0.4.5

 - all tests pass
 - python 3+
 - fetchurl since package is on gitlab
---
 .../pymatgen-lammps/default.nix               | 31 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 33 insertions(+)
 create mode 100644 pkgs/development/python-modules/pymatgen-lammps/default.nix

diff --git a/pkgs/development/python-modules/pymatgen-lammps/default.nix b/pkgs/development/python-modules/pymatgen-lammps/default.nix
new file mode 100644
index 00000000000..dbe9107c7c8
--- /dev/null
+++ b/pkgs/development/python-modules/pymatgen-lammps/default.nix
@@ -0,0 +1,31 @@
+{ lib
+, fetchurl
+, buildPythonPackage
+, pymatgen
+, lammps
+, pytestrunner
+, pytest
+, isPy3k
+}:
+
+buildPythonPackage rec {
+  pname = "pymatgen-lammps";
+  version = "0.4.5";
+  disabled = (!isPy3k);
+
+  src = fetchurl {
+     url = "https://gitlab.com/costrouc/${pname}/-/archive/v${version}/${pname}-v${version}.tar.gz";
+     sha256 = "0shldl8is3195jmji7dr3zsh1bzxlahaqrmpr28niks7nnfj80fx";
+  };
+
+  buildInputs = [ pytestrunner ];
+  checkInputs = [ pytest ];
+  propagatedBuildInputs = [ pymatgen ];
+
+  meta = {
+    description = "A LAMMPS wrapper using pymatgen";
+    homepage = https://gitlab.com/costrouc/pymatgen-lammps;
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 8399005534f..a74d0bc8579 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -439,6 +439,8 @@ in {
 
   pymatgen = callPackage ../development/python-modules/pymatgen { };
 
+  pymatgen-lammps = callPackage ../development/python-modules/pymatgen-lammps { };
+
   pynisher = callPackage ../development/python-modules/pynisher { };
 
   pyparser = callPackage ../development/python-modules/pyparser { };

From dc552ab32e5cf266d3a4592323fbe7196169a1ab Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:46:44 -0400
Subject: [PATCH 011/294] pythonPackages.lammps-cython: init at 0.5.7

 - python 3+
 - all tests pass
 - fetchurl since project based in gitlab and to run tests
---
 .../python-modules/lammps-cython/default.nix  | 53 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  4 ++
 2 files changed, 57 insertions(+)
 create mode 100644 pkgs/development/python-modules/lammps-cython/default.nix

diff --git a/pkgs/development/python-modules/lammps-cython/default.nix b/pkgs/development/python-modules/lammps-cython/default.nix
new file mode 100644
index 00000000000..501e4adc21d
--- /dev/null
+++ b/pkgs/development/python-modules/lammps-cython/default.nix
@@ -0,0 +1,53 @@
+{ lib
+, fetchurl
+, buildPythonPackage
+, lammps-mpi
+, mpi
+, mpi4py
+, numpy
+, cython
+, pymatgen
+, ase
+, pytestrunner
+, pytest
+, pytestcov
+, isPy3k
+, openssh
+}:
+
+buildPythonPackage rec {
+  pname = "lammps-cython";
+  version = "0.5.7";
+  disabled = (!isPy3k);
+
+  src = fetchurl {
+     url = "https://gitlab.com/costrouc/${pname}/-/archive/v${version}/${pname}-v${version}.tar.gz";
+     sha256 = "1wj9scmjdl00af13b5ihfccrjpikrdgkzd88ialam1nkxvxi42bl";
+  };
+
+  buildInputs = [ cython pytestrunner ];
+  checkInputs = [ pytest pytestcov openssh ];
+  propagatedBuildInputs = [ mpi4py pymatgen ase numpy ];
+
+  preBuild = ''
+    echo "Creating lammps.cfg file..."
+    cat << EOF > lammps.cfg
+    [lammps]
+    lammps_include_dir = ${lammps-mpi}/include
+    lammps_library_dir = ${lammps-mpi}/lib
+    lammps_library = lammps_mpi
+
+    [mpi]
+    mpi_include_dir = ${mpi}/include
+    mpi_library_dir = ${mpi}/lib
+    mpi_library     = mpi
+    EOF
+  '';
+
+  meta = {
+    description = "Pythonic Wrapper to LAMMPS using cython";
+    homepage = https://gitlab.com/costrouc/lammps-cython;
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index a74d0bc8579..f1499b5d42a 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -308,6 +308,10 @@ in {
 
   jira = callPackage ../development/python-modules/jira { };
 
+  lammps-cython = callPackage ../development/python-modules/lammps-cython {
+    mpi = pkgs.openmpi;
+  };
+
   lmtpd = callPackage ../development/python-modules/lmtpd { };
 
   logster = callPackage ../development/python-modules/logster { };

From 058e22e0a3bd3bda79ab6bba6421b8d134907ab6 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 10 Aug 2018 16:47:46 -0400
Subject: [PATCH 012/294] pythonPackages.dftfit: init at 0.4.11

 - tests require lfs download so not run
 - python 3+
 - fetchpypi since fetchurl is large download
---
 .../python-modules/dftfit/default.nix         | 47 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 +
 2 files changed, 49 insertions(+)
 create mode 100644 pkgs/development/python-modules/dftfit/default.nix

diff --git a/pkgs/development/python-modules/dftfit/default.nix b/pkgs/development/python-modules/dftfit/default.nix
new file mode 100644
index 00000000000..711f4ac1e0e
--- /dev/null
+++ b/pkgs/development/python-modules/dftfit/default.nix
@@ -0,0 +1,47 @@
+{ lib
+, fetchPypi
+, buildPythonPackage
+, pymatgen
+, marshmallow
+, pyyaml
+, pygmo
+, pandas
+, scipy
+, numpy
+, scikitlearn
+, lammps-cython
+, pymatgen-lammps
+, pytestrunner
+, pytest
+, pytestcov
+, pytest-benchmark
+, isPy3k
+, openssh
+}:
+
+buildPythonPackage rec {
+  pname = "dftfit";
+  version = "0.4.11";
+  disabled = (!isPy3k);
+
+  src = fetchPypi {
+     inherit pname version;
+     sha256 = "c6e36a793f9f94746bb8a04fb8316404aeacfa918704de07b15e1b4b8b62242d";
+  };
+
+  buildInputs = [ pytestrunner ];
+  checkInputs = [ pytest pytestcov pytest-benchmark openssh ];
+  propagatedBuildInputs = [ pymatgen marshmallow pyyaml pygmo
+                            pandas scipy numpy scikitlearn
+                            lammps-cython pymatgen-lammps ];
+
+  # tests require git lfs download. and is quite large so skip tests
+  doCheck = false;
+
+  meta = {
+    description = "Ab-Initio Molecular Dynamics Potential Development";
+    homepage = https://gitlab.com/costrouc/dftfit;
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index f1499b5d42a..8240e7b9557 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -264,6 +264,8 @@ in {
     dbus = pkgs.dbus;
   };
 
+  dftfit = callPackage ../development/python-modules/dftfit { };
+
   discid = callPackage ../development/python-modules/discid { };
 
   discordpy = callPackage ../development/python-modules/discordpy { };

From 26d5d030fe498b64a307af35ff96ff215ccd967a Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Fri, 17 Aug 2018 14:49:52 +0200
Subject: [PATCH 013/294] openblas: add pkg-config aliases

---
 pkgs/applications/science/math/sage/default.nix | 10 +++-------
 .../science/math/sage/openblas-pc.nix           | 17 -----------------
 .../applications/science/math/sage/sage-env.nix |  6 +++---
 .../science/math/sage/sage-with-env.nix         |  6 ------
 pkgs/applications/science/math/sage/sagelib.nix |  7 +------
 .../libraries/science/math/openblas/default.nix | 14 ++++++++++++++
 6 files changed, 21 insertions(+), 39 deletions(-)
 delete mode 100644 pkgs/applications/science/math/sage/openblas-pc.nix

diff --git a/pkgs/applications/science/math/sage/default.nix b/pkgs/applications/science/math/sage/default.nix
index 7e62f0cf75e..08e3a752b8b 100644
--- a/pkgs/applications/science/math/sage/default.nix
+++ b/pkgs/applications/science/math/sage/default.nix
@@ -21,7 +21,7 @@ let
 
       sagelib = self.callPackage ./sagelib.nix {
         inherit flint ecl arb;
-        inherit sage-src openblas-blas-pc openblas-cblas-pc openblas-lapack-pc pynac singular;
+        inherit sage-src pynac singular;
         linbox = nixpkgs.linbox.override { withSage = true; };
       };
 
@@ -41,13 +41,13 @@ let
       };
 
       sage-env = self.callPackage ./sage-env.nix {
-        inherit sage-src python rWrapper openblas-cblas-pc ecl singular palp flint pynac pythonEnv;
+        inherit sage-src python rWrapper ecl singular palp flint pynac pythonEnv;
         pkg-config = nixpkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
       };
 
       sage-with-env = self.callPackage ./sage-with-env.nix {
         inherit pythonEnv;
-        inherit sage-src openblas-blas-pc openblas-cblas-pc openblas-lapack-pc pynac singular;
+        inherit sage-src pynac singular;
         pkg-config = nixpkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
         three = nodePackages_8_x.three;
       };
@@ -60,10 +60,6 @@ let
     };
   };
 
-  openblas-blas-pc = callPackage ./openblas-pc.nix { name = "blas"; };
-  openblas-cblas-pc = callPackage ./openblas-pc.nix { name = "cblas"; };
-  openblas-lapack-pc = callPackage ./openblas-pc.nix { name = "lapack"; };
-
   sage-src = callPackage ./sage-src.nix {};
 
   pythonRuntimeDeps = with python.pkgs; [
diff --git a/pkgs/applications/science/math/sage/openblas-pc.nix b/pkgs/applications/science/math/sage/openblas-pc.nix
deleted file mode 100644
index f4669a6557e..00000000000
--- a/pkgs/applications/science/math/sage/openblas-pc.nix
+++ /dev/null
@@ -1,17 +0,0 @@
-{ openblasCompat
-, writeTextFile
-, name
-}:
-
-writeTextFile {
-  name = "openblas-${name}-pc-${openblasCompat.version}";
-  destination = "/lib/pkgconfig/${name}.pc";
-  text = ''
-    Name: ${name}
-    Version: ${openblasCompat.version}
-
-    Description: ${name} for SageMath, provided by the OpenBLAS package.
-    Cflags: -I${openblasCompat}/include
-    Libs: -L${openblasCompat}/lib -lopenblas
-  '';
-}
diff --git a/pkgs/applications/science/math/sage/sage-env.nix b/pkgs/applications/science/math/sage/sage-env.nix
index 317eb6e16c4..74c2e0aa036 100644
--- a/pkgs/applications/science/math/sage/sage-env.nix
+++ b/pkgs/applications/science/math/sage/sage-env.nix
@@ -37,7 +37,7 @@
 , lcalc
 , rubiks
 , flintqs
-, openblas-cblas-pc
+, openblasCompat
 , flint
 , gmp
 , mpfr
@@ -98,9 +98,9 @@ writeTextFile rec {
     export PKG_CONFIG_PATH='${lib.concatStringsSep ":" (map (pkg: "${pkg}/lib/pkgconfig") [
         # This is only needed in the src/sage/misc/cython.py test and I'm not sure if there's really a use-case
         # for it outside of the tests. However since singular and openblas are runtime dependencies anyways
-        # and openblas-cblas-pc is tiny, it doesn't really hurt to include.
+        # it doesn't really hurt to include.
         singular
-        openblas-cblas-pc
+        openblasCompat
       ])
     }'
     export SAGE_ROOT='${sage-src}'
diff --git a/pkgs/applications/science/math/sage/sage-with-env.nix b/pkgs/applications/science/math/sage/sage-with-env.nix
index 63b9772b823..8ccf8b5a493 100644
--- a/pkgs/applications/science/math/sage/sage-with-env.nix
+++ b/pkgs/applications/science/math/sage/sage-with-env.nix
@@ -4,9 +4,6 @@
 , sage-env
 , sage-src
 , openblasCompat
-, openblas-blas-pc
-, openblas-cblas-pc
-, openblas-lapack-pc
 , pkg-config
 , three
 , singular
@@ -32,9 +29,6 @@ let
     makeWrapper
     pkg-config
     openblasCompat # lots of segfaults with regular (64 bit) openblas
-    openblas-blas-pc
-    openblas-cblas-pc
-    openblas-lapack-pc
     singular
     three
     pynac
diff --git a/pkgs/applications/science/math/sage/sagelib.nix b/pkgs/applications/science/math/sage/sagelib.nix
index abcefba5e26..c1dbcf38304 100644
--- a/pkgs/applications/science/math/sage/sagelib.nix
+++ b/pkgs/applications/science/math/sage/sagelib.nix
@@ -3,9 +3,6 @@
 , buildPythonPackage
 , arb
 , openblasCompat
-, openblas-blas-pc
-, openblas-cblas-pc
-, openblas-lapack-pc
 , brial
 , cliquer
 , cypari2
@@ -59,9 +56,7 @@ buildPythonPackage rec {
   nativeBuildInputs = [
     iml
     perl
-    openblas-blas-pc
-    openblas-cblas-pc
-    openblas-lapack-pc
+    openblasCompat
     jupyter_core
   ];
 
diff --git a/pkgs/development/libraries/science/math/openblas/default.nix b/pkgs/development/libraries/science/math/openblas/default.nix
index e00a5ca9f8d..ced200f905c 100644
--- a/pkgs/development/libraries/science/math/openblas/default.nix
+++ b/pkgs/development/libraries/science/math/openblas/default.nix
@@ -136,6 +136,20 @@ stdenv.mkDerivation rec {
   doCheck = true;
   checkTarget = "tests";
 
+  postInstall = ''
+    # Write pkgconfig aliases. Upstream report:
+    # https://github.com/xianyi/OpenBLAS/issues/1740
+    for alias in blas cblas lapack; do
+      cat <<EOF > $out/lib/pkgconfig/openblas-$alias.pc
+Name: $alias
+Version: ${version}
+Description: $alias provided by the OpenBLAS package.
+Cflags: -I$out/include
+Libs: -L$out/lib -lopenblas
+EOF
+    done
+  '';
+
   meta = with stdenv.lib; {
     description = "Basic Linear Algebra Subprograms";
     license = licenses.bsd3;

From fb70ad3d6010d77b26a14ba44d80b8f138e07a90 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm+bot@ryantm.com>
Date: Fri, 24 Aug 2018 03:57:05 -0700
Subject: [PATCH 014/294] hdf5-threadsafe: 1.10.2 -> 1.10.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/hdf5-threadsafe/versions.
---
 pkgs/tools/misc/hdf5/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/hdf5/default.nix b/pkgs/tools/misc/hdf5/default.nix
index 31813c0b880..e481a31e926 100644
--- a/pkgs/tools/misc/hdf5/default.nix
+++ b/pkgs/tools/misc/hdf5/default.nix
@@ -16,11 +16,11 @@ assert !cpp || mpi == null;
 let inherit (stdenv.lib) optional optionals; in
 
 stdenv.mkDerivation rec {
-  version = "1.10.2";
+  version = "1.10.3";
   name = "hdf5-${version}";
   src = fetchurl {
     url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/${name}/src/${name}.tar.bz2";
-    sha256 = "0wfb3w6dzi6zr2g1sdswqy9lxbp7yr4blvyi7k2xya7izmxmpb8w";
+    sha256 = "1a85v6812afi6k3gmfdcj80f6ys9kc80v7ysz39pz9948z7dqp66";
  };
 
   passthru = {

From 7361cadbdb4214839a4cfb56c46efbe908510fa4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:21:37 +0200
Subject: [PATCH 015/294] python: absl-py: 0.2.2 -> 0.3.0

---
 pkgs/development/python-modules/absl-py/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/absl-py/default.nix b/pkgs/development/python-modules/absl-py/default.nix
index 1cb5275a6c3..3dd40a20e6c 100644
--- a/pkgs/development/python-modules/absl-py/default.nix
+++ b/pkgs/development/python-modules/absl-py/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "absl-py";
-  version = "0.2.2";
+  version = "0.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e0eb8358b549552b1cc5972350bc3e41dd0a926c15b3ff95ce60f3c78c80824c";
+    sha256 = "fcb729e9a3cf1a8f88f6c3a6465859c42116f23e1feb6208825eb88f3fd2b880";
   };
 
   propagatedBuildInputs = [ six ];

From 8667acf426f92f57a4854d1528540d1c98fca89e Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:21:45 +0200
Subject: [PATCH 016/294] python: aiofiles: 0.3.2 -> 0.4.0

---
 pkgs/development/python-modules/aiofiles/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/aiofiles/default.nix b/pkgs/development/python-modules/aiofiles/default.nix
index 572c18171d1..55d68f93f2c 100644
--- a/pkgs/development/python-modules/aiofiles/default.nix
+++ b/pkgs/development/python-modules/aiofiles/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "aiofiles";
-  version = "0.3.2";
+  version = "0.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "852a493a877b73e11823bfd4e8e5ef2610d70d12c9eaed961bcd9124d8de8c10";
+    sha256 = "021ea0ba314a86027c166ecc4b4c07f2d40fc0f4b3a950d1868a0f2571c2bbee";
   };
 
   disabled = pythonOlder "3.3";

From cd14cbeed855030bc7141540479106550209a327 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:21:52 +0200
Subject: [PATCH 017/294] python: APScheduler: 3.5.1 -> 3.5.2

---
 pkgs/development/python-modules/APScheduler/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/APScheduler/default.nix b/pkgs/development/python-modules/APScheduler/default.nix
index 5e108cd7dcf..25d3bc0b505 100644
--- a/pkgs/development/python-modules/APScheduler/default.nix
+++ b/pkgs/development/python-modules/APScheduler/default.nix
@@ -20,11 +20,11 @@
 
 buildPythonPackage rec {
   pname = "APScheduler";
-  version = "3.5.1";
+  version = "3.5.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "952c8f46a11f32b9d5bfbe3e347dac2cdf0680d8b4799590dc9c3a9865b73b65";
+    sha256 = "6aba721f4db411be8f5ffe89acbaa174fe46425e15edf32ed7bfdfafb6ec1eb4";
   };
 
   buildInputs = [

From 43bb4ac8abf90d374dad945a1e990ed290e17b75 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:21:59 +0200
Subject: [PATCH 018/294] python: astroid: 2.0.1 -> 2.0.4

---
 pkgs/development/python-modules/astroid/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/astroid/default.nix b/pkgs/development/python-modules/astroid/default.nix
index ea087ce4f5f..ccf6f405526 100644
--- a/pkgs/development/python-modules/astroid/default.nix
+++ b/pkgs/development/python-modules/astroid/default.nix
@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "astroid";
-  version = "2.0.1";
+  version = "2.0.4";
 
   disabled = pythonOlder "3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "218e36cf8d98a42f16214e8670819ce307fa707d1dcf7f9af84c7aede1febc7f";
+    sha256 = "c7013d119ec95eb626f7a2011f0b63d0c9a095df9ad06d8507b37084eada1a8d";
   };
 
   # From astroid/__pkginfo__.py

From abf0cf692ff2c178bb86696d748289f33e2bbacd Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:22:06 +0200
Subject: [PATCH 019/294] python: astropy: 3.0.3 -> 3.0.4

---
 pkgs/development/python-modules/astropy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/astropy/default.nix b/pkgs/development/python-modules/astropy/default.nix
index 4901b798955..acbd7c2ec65 100644
--- a/pkgs/development/python-modules/astropy/default.nix
+++ b/pkgs/development/python-modules/astropy/default.nix
@@ -7,7 +7,7 @@
 
 buildPythonPackage rec {
   pname = "astropy";
-  version = "3.0.3";
+  version = "3.0.4";
 
   disabled = !isPy3k; # according to setup.py
 
@@ -15,7 +15,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6af07abe5e263820a3dec93832a6ad74005013071490e125afbc6514411721da";
+    sha256 = "f5d37d20632ba74bd0b12a85179c12f64a9ea037ffc916d8a2de3be4f4656c76";
   };
 
   propagatedBuildInputs = [ pytest numpy ]; # yes it really has pytest in install_requires

From cc55de08cd8d696599d3f1b09c1b43eb2fe00bba Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:22:13 +0200
Subject: [PATCH 020/294] python: async_generator: 1.9 -> 1.10

---
 pkgs/development/python-modules/async_generator/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/async_generator/default.nix b/pkgs/development/python-modules/async_generator/default.nix
index 4f46376b62d..6bf77ecd75e 100644
--- a/pkgs/development/python-modules/async_generator/default.nix
+++ b/pkgs/development/python-modules/async_generator/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "async_generator";
-  version = "1.9";
+  version = "1.10";
 
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b7d5465c6174fe86dba498ececb175f93a6097ffb7cc91946405e1f05b848371";
+    sha256 = "6ebb3d106c12920aaae42ccb6f787ef5eefdcdd166ea3d628fa8476abe712144";
   };
 
   checkInputs = [ pytest pytest-asyncio ];

From d72794bf324402810ac6ada47ee88d7ce9ee381f Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:22:20 +0200
Subject: [PATCH 021/294] python: autobahn: 18.6.1 -> 18.7.1

---
 pkgs/development/python-modules/autobahn/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/autobahn/default.nix b/pkgs/development/python-modules/autobahn/default.nix
index 30479ce8266..fac9fe48d5e 100644
--- a/pkgs/development/python-modules/autobahn/default.nix
+++ b/pkgs/development/python-modules/autobahn/default.nix
@@ -5,11 +5,11 @@
 }:
 buildPythonPackage rec {
   pname = "autobahn";
-  version = "18.6.1";
+  version = "18.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2f41bfc512ec482044fa8cfa74182118dedd87e03b3494472d9ff1b5a1e27d24";
+    sha256 = "163dd329c2a29f4ef82f7fe85a6f6e654a2aa6837bd83834cf537e4efa9204be";
   };
 
   # Upstream claim python2 support, but tests require pytest-asyncio which

From a799aa98381d0f7be355564e4f7eed9ce3303f48 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:22:27 +0200
Subject: [PATCH 022/294] python: beautifulsoup4: 4.6.0 -> 4.6.3

---
 pkgs/development/python-modules/beautifulsoup4/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/beautifulsoup4/default.nix b/pkgs/development/python-modules/beautifulsoup4/default.nix
index 6ae838265b1..7cf4f36a2f0 100644
--- a/pkgs/development/python-modules/beautifulsoup4/default.nix
+++ b/pkgs/development/python-modules/beautifulsoup4/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "beautifulsoup4";
-  version = "4.6.0";
+  version = "4.6.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "12cf0ygpz9srpfh9gx2f9ba0swa1rzypv3sm4r0hmjyw6b4nm2w0";
+    sha256 = "90f8e61121d6ae58362ce3bed8cd997efb00c914eae0ff3d363c32f9a9822d10";
   };
 
   buildInputs = [ nose ];

From 37a577a8f91c500113e39311e0897b6a3990a142 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:22:34 +0200
Subject: [PATCH 023/294] python: botocore: 1.10.65 -> 1.10.75

---
 pkgs/development/python-modules/botocore/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix
index f1475aed693..9875c4eaff6 100644
--- a/pkgs/development/python-modules/botocore/default.nix
+++ b/pkgs/development/python-modules/botocore/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.10.65";
+  version = "1.10.75";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "35f626029a6b17bfd503ce3379b121606e3f965edcab2612bc75ce8603fdf08c";
+    sha256 = "82055917cb431c1cee7c737189a170cc92ffc3824a6da504e8d3ff4df9fa2eab";
   };
 
   propagatedBuildInputs = [

From d962411a3451625e52c024a8d7e0e1e8003e7c81 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:22:41 +0200
Subject: [PATCH 024/294] python: breathe: 4.9.1 -> 4.10.0

---
 pkgs/development/python-modules/breathe/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/breathe/default.nix b/pkgs/development/python-modules/breathe/default.nix
index a76b7b2611b..645f75eb323 100644
--- a/pkgs/development/python-modules/breathe/default.nix
+++ b/pkgs/development/python-modules/breathe/default.nix
@@ -1,12 +1,12 @@
 { lib, fetchPypi, buildPythonPackage, docutils, six, sphinx, isPy3k }:
 
 buildPythonPackage rec {
-  version = "4.9.1";
+  version = "4.10.0";
   pname = "breathe";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "76e1f3706efeda2610d9a8e7b421d2877ff0654a3fe6d3190a8686536111a684";
+    sha256 = "e94370b8b607a32d9611ed8246e635f02c21dc6847f04e888a00f66a12694eff";
   };
 
   propagatedBuildInputs = [ docutils six sphinx ];

From 75683a6eb87669bf68cdac54d8379dcf7f5548c9 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:22:48 +0200
Subject: [PATCH 025/294] python: BTrees: 4.5.0 -> 4.5.1

---
 pkgs/development/python-modules/btrees/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/btrees/default.nix b/pkgs/development/python-modules/btrees/default.nix
index c031c872da3..c96d305a7f6 100644
--- a/pkgs/development/python-modules/btrees/default.nix
+++ b/pkgs/development/python-modules/btrees/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "BTrees";
-  version = "4.5.0";
+  version = "4.5.1";
 
   buildInputs = [ transaction ];
   propagatedBuildInputs = [ persistent zope_interface ];
@@ -17,7 +17,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "46b02cb69b26a5238db771ea1955b503df73ecf254bb8063af4c61999fc75b5c";
+    sha256 = "dcc096c3cf92efd6b9365951f89118fd30bc209c9af83bf050a28151a9992786";
   };
 
   meta = with stdenv.lib; {

From b1cd6aa314fd16d833d41b4b4a96ec3c24d0f0a7 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:22:55 +0200
Subject: [PATCH 026/294] python: zc.buildout: 2.2.5 -> 2.12.1

---
 pkgs/development/python-modules/buildout/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/buildout/default.nix b/pkgs/development/python-modules/buildout/default.nix
index 9efc53ebe6d..c75b9fdb6cc 100644
--- a/pkgs/development/python-modules/buildout/default.nix
+++ b/pkgs/development/python-modules/buildout/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "zc.buildout";
-  version = "2.2.5";
+  version = "2.12.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fb08f24f9e51e647e29d714f6e9ad51a4ea28673dddeed831315617bb5a805d0";
+    sha256 = "1e180b62fd129a68cb3a9ec8eb0ef457e18921269a93e87ef2cc34519415332d";
   };
 
   meta = with stdenv.lib; {

From 4fc5ebd1d03c6fa2c598226d16fe139b6f29c44f Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:02 +0200
Subject: [PATCH 027/294] python: cairocffi: 0.8.1 -> 0.9.0

---
 pkgs/development/python-modules/cairocffi/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cairocffi/default.nix b/pkgs/development/python-modules/cairocffi/default.nix
index 13d00d0529c..39799daca21 100644
--- a/pkgs/development/python-modules/cairocffi/default.nix
+++ b/pkgs/development/python-modules/cairocffi/default.nix
@@ -17,11 +17,11 @@
 
 buildPythonPackage rec {
   pname = "cairocffi";
-  version = "0.8.1";
+  version = "0.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0y373vafv7q35msg7gqdn7niifr3j4j4n070hflxshahs59irss7";
+    sha256 = "15386c3a9e08823d6826c4491eaccc7b7254b1dc587a3b9ce60c350c3f990337";
   };
 
   LC_ALL = "en_US.UTF-8";

From e2b4a7a9e8a4fec7bac648b2b28e0a9ede4d206a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:09 +0200
Subject: [PATCH 028/294] python: certifi: 2018.4.16 -> 2018.8.13

---
 pkgs/development/python-modules/certifi/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/certifi/default.nix b/pkgs/development/python-modules/certifi/default.nix
index 3bc686121cf..429fd47f72e 100644
--- a/pkgs/development/python-modules/certifi/default.nix
+++ b/pkgs/development/python-modules/certifi/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "certifi";
-  version = "2018.4.16";
+  version = "2018.8.13";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "13e698f54293db9f89122b0581843a782ad0934a4fe0172d2a980ba77fc61bb7";
+    sha256 = "4c1d68a1408dd090d2f3a869aa94c3947cc1d967821d1ed303208c9f41f0f2f4";
   };
 
   meta = {

From 65dbc4235e6ffcc6831324c4c6ae5942b337f163 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:16 +0200
Subject: [PATCH 029/294] python: chainer: 4.3.0 -> 4.3.1

---
 pkgs/development/python-modules/chainer/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/chainer/default.nix b/pkgs/development/python-modules/chainer/default.nix
index d332d99cf80..80219c3f95a 100644
--- a/pkgs/development/python-modules/chainer/default.nix
+++ b/pkgs/development/python-modules/chainer/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "chainer";
-  version = "4.3.0";
+  version = "4.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a83044256edb1946c47cb9ae687d195c2aa0deaef46ab85a8ffc4a01f7001683";
+    sha256 = "d56b769720ef9de93d5b74faea96729b076beb5362f97565654de3c723f2c822";
   };
 
   checkInputs = [

From 7834477dc4b98c470a284c0c73cdb37c8f161ea4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:23 +0200
Subject: [PATCH 030/294] python: docker: 3.4.1 -> 3.5.0

---
 pkgs/development/python-modules/docker/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/docker/default.nix b/pkgs/development/python-modules/docker/default.nix
index dd4aafe1aa9..85c2a4b0230 100644
--- a/pkgs/development/python-modules/docker/default.nix
+++ b/pkgs/development/python-modules/docker/default.nix
@@ -3,12 +3,12 @@
 , ipaddress, backports_ssl_match_hostname, docker_pycreds
 }:
 buildPythonPackage rec {
-  version = "3.4.1";
+  version = "3.5.0";
   pname = "docker";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ad077b49660b711d20f50f344f70cfae014d635ef094bf21b0d7df5f0aeedf99";
+    sha256 = "bc693be5a84b3b9e5aaf156068c5c0a445ee5138c638c3fbc857133bf67ebe07";
   };
 
   propagatedBuildInputs = [

From e48f98325430c7ea73ee0fdf5c4308f781b84161 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:30 +0200
Subject: [PATCH 031/294] python: dogpile.cache: 0.6.6 -> 0.6.7

---
 pkgs/development/python-modules/dogpile.cache/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/dogpile.cache/default.nix b/pkgs/development/python-modules/dogpile.cache/default.nix
index 9a840e5112a..b830d34589b 100644
--- a/pkgs/development/python-modules/dogpile.cache/default.nix
+++ b/pkgs/development/python-modules/dogpile.cache/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "dogpile.cache";
-  version = "0.6.6";
+  version = "0.6.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "044d4ea0a0abc72491044f3d3df8e1fc9e8fa7a436c6e9a0da5850d23a0d16c1";
+    sha256 = "fca7deb7c276b879b01c15c5d39b3c05701dc43b263ec3fef1e52cb851cf88ab";
   };
 
   # Disable concurrency tests that often fail,

From 566a915f8c9df464cfebe20c187b2bcf3cc05d26 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:37 +0200
Subject: [PATCH 032/294] python: dulwich: 0.19.5 -> 0.19.6

---
 pkgs/development/python-modules/dulwich/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/dulwich/default.nix b/pkgs/development/python-modules/dulwich/default.nix
index 2617249b75a..4713ff0ab28 100644
--- a/pkgs/development/python-modules/dulwich/default.nix
+++ b/pkgs/development/python-modules/dulwich/default.nix
@@ -4,12 +4,12 @@
 , git, glibcLocales }:
 
 buildPythonPackage rec {
-  version = "0.19.5";
+  version = "0.19.6";
   pname = "dulwich";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "34f99e575fe1f1e89cca92cec1ddd50b4991199cb00609203b28df9eb83ce259";
+    sha256 = "9a7dc5c5759f3d3b7a9ac0a684aa2c47f099e1722d9caab5b043cef1d73ff4a2";
   };
 
   LC_ALL = "en_US.UTF-8";

From abeee701bdf8d1451684c5e95f09e470c1298d53 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:44 +0200
Subject: [PATCH 033/294] python: ECPy: 0.9.0 -> 0.9.1

---
 pkgs/development/python-modules/ecpy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/ecpy/default.nix b/pkgs/development/python-modules/ecpy/default.nix
index 97f04828300..5338a963cfb 100644
--- a/pkgs/development/python-modules/ecpy/default.nix
+++ b/pkgs/development/python-modules/ecpy/default.nix
@@ -4,13 +4,13 @@
 
 buildPythonPackage rec {
   pname = "ECPy";
-  version = "0.9.0";
+  version = "0.9.1";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ef41346ae24789699f3bc3ddefbfac03ad6b73b7d3d19b998ba9ce47b67c7277";
+    sha256 = "f0df66be67f3de0152dfb3c453f4247bdfa2b4e37aa75b98617a637376032229";
   };
 
   buildInputs = [ hidapi pycrypto pillow protobuf future ];

From 691270a594707a101ea4dc2be2af027ac3584b86 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:51 +0200
Subject: [PATCH 034/294] python: elasticsearch: 6.3.0 -> 6.3.1

---
 pkgs/development/python-modules/elasticsearch/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/elasticsearch/default.nix b/pkgs/development/python-modules/elasticsearch/default.nix
index 087ca3910c5..6c5ab07db19 100644
--- a/pkgs/development/python-modules/elasticsearch/default.nix
+++ b/pkgs/development/python-modules/elasticsearch/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage (rec {
   pname = "elasticsearch";
-  version = "6.3.0";
+  version = "6.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "80ff7a1a56920535a9987da333c7e385b2ded27595b6de33860707dab758efbe";
+    sha256 = "aada5cfdc4a543c47098eb3aca6663848ef5d04b4324935ced441debc11ec98b";
   };
 
   # Check is disabled because running them destroy the content of the local cluster!

From 59fafef2e2c1f83bc19126d63849f41387365794 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:23:58 +0200
Subject: [PATCH 035/294] python: Flask-PyMongo: 2.0.1 -> 2.1.0

---
 pkgs/development/python-modules/Flask-PyMongo/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/Flask-PyMongo/default.nix b/pkgs/development/python-modules/Flask-PyMongo/default.nix
index 6a14607ad27..862fd84c492 100644
--- a/pkgs/development/python-modules/Flask-PyMongo/default.nix
+++ b/pkgs/development/python-modules/Flask-PyMongo/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "Flask-PyMongo";
-  version = "2.0.1";
+  version = "2.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6a02add52ac245064720c2bb8b02074b9a5a0d9498279510ea2a537512fd3fa5";
+    sha256 = "0b99dd99985660ebbc4b34bb44550f88a527cbc573faa01febccce3c4ab28347";
   };
 
   checkInputs = [ pytest ];

From 5fe8728e3e028f990894c5f3fd2e97357d8b6c28 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:24:06 +0200
Subject: [PATCH 036/294] python: folium: 0.5.0 -> 0.6.0

---
 pkgs/development/python-modules/folium/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/folium/default.nix b/pkgs/development/python-modules/folium/default.nix
index eeb787ea3c0..cd6bac2962d 100644
--- a/pkgs/development/python-modules/folium/default.nix
+++ b/pkgs/development/python-modules/folium/default.nix
@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "folium";
-  version = "0.5.0";
+  version = "0.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "748944521146d85c6cd6230acf234e885864cd0f42fea3758d655488517e5e6e";
+    sha256 = "08681be47b1861221bc7cf17b6e368a8d734db81682d716c22a11e839f47cb79";
   };
 
   checkInputs = [ pytest numpy nbconvert pandas mock ];

From e591f2858f65d4f4e5e0b1e4291b475e5f3299c7 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:24:13 +0200
Subject: [PATCH 037/294] python: fonttools: 3.28.0 -> 3.29.0

---
 pkgs/development/python-modules/fonttools/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/fonttools/default.nix b/pkgs/development/python-modules/fonttools/default.nix
index 4874fbba3c6..4759e9d3c83 100644
--- a/pkgs/development/python-modules/fonttools/default.nix
+++ b/pkgs/development/python-modules/fonttools/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "fonttools";
-  version = "3.28.0";
+  version = "3.29.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ebf2ee25a6060e8551880a3b05d6ecadcdcfbd1b32fc272ff7b3acdb22945b6f";
+    sha256 = "aab38c8c131670684321437d4857dcb4de1c775efd152a9ca9c4d81f1cb97fe7";
     extension = "zip";
   };
 

From 465860d9a985cbac2ffbed07986e44d90fa5e90b Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:24:28 +0200
Subject: [PATCH 038/294] python: google-api-core: 1.2.1 -> 1.3.0

---
 pkgs/development/python-modules/google_api_core/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/google_api_core/default.nix b/pkgs/development/python-modules/google_api_core/default.nix
index 2273b48b5b3..ded728bdc0d 100644
--- a/pkgs/development/python-modules/google_api_core/default.nix
+++ b/pkgs/development/python-modules/google_api_core/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "google-api-core";
-  version = "1.2.1";
+  version = "1.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e24e391054ed6e925ff6d03f225d9f66f3da97d0ab6f61e59274fb918fbe3ef1";
+    sha256 = "ac85fc7f6687bb0271f2f70ca298da90f35789f9de1fe3a11e8caeb571332b77";
   };
 
   propagatedBuildInputs = [

From c82458090d9d14ffb752ccb2b7abd24b39d53e67 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:24:35 +0200
Subject: [PATCH 039/294] python: google-auth: 1.5.0 -> 1.5.1

---
 pkgs/development/python-modules/google_auth/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/google_auth/default.nix b/pkgs/development/python-modules/google_auth/default.nix
index d908bb04151..fde773e738b 100644
--- a/pkgs/development/python-modules/google_auth/default.nix
+++ b/pkgs/development/python-modules/google_auth/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "google-auth";
-  version = "1.5.0";
+  version = "1.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1745c9066f698eac3da99cef082914495fb71bc09597ba7626efbbb64c4acc57";
+    sha256 = "9ca363facbf2622d9ba828017536ccca2e0f58bd15e659b52f312172f8815530";
   };
 
   checkInputs = [ pytest mock oauth2client flask requests urllib3 pytest-localserver ];

From 60c35659bfc67e4af026196bba4ddb84f00a7370 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:24:43 +0200
Subject: [PATCH 040/294] python: gphoto2: 1.8.2 -> 1.8.3

---
 pkgs/development/python-modules/gphoto2/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/gphoto2/default.nix b/pkgs/development/python-modules/gphoto2/default.nix
index 29aa0400ec5..9757cb950dc 100644
--- a/pkgs/development/python-modules/gphoto2/default.nix
+++ b/pkgs/development/python-modules/gphoto2/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "gphoto2";
-  version = "1.8.2";
+  version = "1.8.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1806bdjc18qh0wyayxymgjnqqqlxs2iwvgk594anxw9y69hrxqni";
+    sha256 = "0257f90f0d8342b8bc996ff1b45b2cd3219a29f8123aa21a6da159ee3566e49f";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 6696977b50a9db78e1cf0d578bee274361e055ab Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:24:50 +0200
Subject: [PATCH 041/294] python: grpcio: 1.13.0 -> 1.14.1

---
 pkgs/development/python-modules/grpcio/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/grpcio/default.nix b/pkgs/development/python-modules/grpcio/default.nix
index 204080fe115..3d3824cdabe 100644
--- a/pkgs/development/python-modules/grpcio/default.nix
+++ b/pkgs/development/python-modules/grpcio/default.nix
@@ -4,11 +4,11 @@
 with stdenv.lib;
 buildPythonPackage rec {
   pname = "grpcio";
-  version = "1.13.0";
+  version = "1.14.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6324581e215157f0fbe335dff2e21a65b4406db98ac7cca05f1e23b4f510b426";
+    sha256 = "4bf23666e763ca7ff6010465864e9f088f4ac7ecc1e11abd6f85b250e66b2c05";
   };
 
   nativeBuildInputs = [ pkgconfig ] ++ optional stdenv.isDarwin darwin.cctools;

From 3dc7a273ed36a0825ab4ff74f509e84a2ff5973d Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:24:57 +0200
Subject: [PATCH 042/294] python: grpcio-tools: 1.13.0 -> 1.14.1

---
 pkgs/development/python-modules/grpcio-tools/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/grpcio-tools/default.nix b/pkgs/development/python-modules/grpcio-tools/default.nix
index 8d4c925acf8..c111e5f75a7 100644
--- a/pkgs/development/python-modules/grpcio-tools/default.nix
+++ b/pkgs/development/python-modules/grpcio-tools/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "grpcio-tools";
-  version = "1.13.0";
+  version = "1.14.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1ck6818kb4nb6skm9lqg492brqs7kfk65f4hh2c7h7c8pkbrpcw1";
+    sha256 = "4ce5aa660d7884f23aac1eafa93b97a4c3e2b512edff871e91fdb6ee86ebd5ea";
   };
 
   enableParallelBuilding = true;

From 140b3cc62fd4a8add751ff6ebe27bf10032a0b92 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:25:05 +0200
Subject: [PATCH 043/294] python: hvac: 0.6.2 -> 0.6.3

---
 pkgs/development/python-modules/hvac/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/hvac/default.nix b/pkgs/development/python-modules/hvac/default.nix
index f18d8eadec8..310bd91b22b 100644
--- a/pkgs/development/python-modules/hvac/default.nix
+++ b/pkgs/development/python-modules/hvac/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "hvac";
-  version = "0.6.2";
+  version = "0.6.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4bc80744df5f09882b1cc91755b03b7b62b093fc63c8c4abb26fbfb9c9e878dd";
+    sha256 = "54672a93f75453a7de13c7c10c6d8a51630e2559a8e2a563d8e272e9e188443f";
   };
 
   propagatedBuildInputs = [ requests ];

From b1bcd547639560241dfcc2a5046d97c2a75f8aa0 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:25:12 +0200
Subject: [PATCH 044/294] python: IBMQuantumExperience: 1.9.8 -> 2.0.1

---
 .../python-modules/ibmquantumexperience/default.nix           | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/ibmquantumexperience/default.nix b/pkgs/development/python-modules/ibmquantumexperience/default.nix
index 0fcb2662801..9ded458312f 100644
--- a/pkgs/development/python-modules/ibmquantumexperience/default.nix
+++ b/pkgs/development/python-modules/ibmquantumexperience/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "IBMQuantumExperience";
-  version = "1.9.8";
+  version = "2.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "78a7d9770fa2884d79d3c8b18f374644866e4d22ec151cf703053f7530bb7b7c";
+    sha256 = "ed164685ab743a4b216275f147227568ce27077068af33d0bd9a301ab1639e6e";
   };
 
   propagatedBuildInputs = [

From 9346ed7554a597a8daf2e79e3138e49e2898e2d4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:25:19 +0200
Subject: [PATCH 045/294] python: invoke: 1.1.0 -> 1.1.1

---
 pkgs/development/python-modules/invoke/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/invoke/default.nix b/pkgs/development/python-modules/invoke/default.nix
index 20d2973ca4f..8785f1fa6db 100644
--- a/pkgs/development/python-modules/invoke/default.nix
+++ b/pkgs/development/python-modules/invoke/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "invoke";
-  version = "1.1.0";
+  version = "1.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0aiy1xvk1f91246zxd1zqrm679vdvd10h843a2na41cqr3cflpi6";
+    sha256 = "1c2cf54c9b9af973ad9704d8ba81b225117cab612568cacbfb3fc42958cc20a9";
   };
 
   # errors with vendored libs

From c119ef323c8286e2d1983a9c67bfd875175170d7 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:25:27 +0200
Subject: [PATCH 046/294] python: ipython: 6.4.0 -> 6.5.0

---
 pkgs/development/python-modules/ipython/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/ipython/default.nix b/pkgs/development/python-modules/ipython/default.nix
index 2c0e4aaf4db..efc6933807f 100644
--- a/pkgs/development/python-modules/ipython/default.nix
+++ b/pkgs/development/python-modules/ipython/default.nix
@@ -23,11 +23,11 @@
 
 buildPythonPackage rec {
   pname = "ipython";
-  version = "6.4.0";
+  version = "6.5.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "eca537aa61592aca2fef4adea12af8e42f5c335004dfa80c78caf80e8b525e5c";
+    sha256 = "b0f2ef9eada4a68ef63ee10b6dde4f35c840035c50fd24265f8052c98947d5a4";
   };
 
   prePatch = lib.optionalString stdenv.isDarwin ''

From d575a899d49f29ea176608e8e904238e922d9263 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:25:34 +0200
Subject: [PATCH 047/294] python: ipywidgets: 7.3.0 -> 7.4.0

---
 pkgs/development/python-modules/ipywidgets/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/ipywidgets/default.nix b/pkgs/development/python-modules/ipywidgets/default.nix
index 9f15a2fc5c2..dde041140b9 100644
--- a/pkgs/development/python-modules/ipywidgets/default.nix
+++ b/pkgs/development/python-modules/ipywidgets/default.nix
@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "ipywidgets";
-  version = "7.3.0";
+  version = "7.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3ce93db970a94f06f38121da70757cdbcce884ecd14f79a4dd9bc49a47e0f33b";
+    sha256 = "fd24a66d82f2ea49e281da7714a7c656340d3ec24dff376b17590fa59469b817";
   };
 
   # Tests are not distributed

From 3ba840a60f818a59a2807f2a4ea78df35cc0e376 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:25:42 +0200
Subject: [PATCH 048/294] python: jdatetime: 2.2.1 -> 3.0.0

---
 pkgs/development/python-modules/jdatetime/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jdatetime/default.nix b/pkgs/development/python-modules/jdatetime/default.nix
index db79050077f..a7c362231ca 100644
--- a/pkgs/development/python-modules/jdatetime/default.nix
+++ b/pkgs/development/python-modules/jdatetime/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "jdatetime";
-  version = "2.2.1";
+  version = "3.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "030a47ad3acbde45cb03872e2c6415c675dbb4a82462302971e93076145b5096";
+    sha256 = "07cdb02e8d6610c38e8ae7746b12cbc39068cc5d54fb2baa915579b60d781b5b";
   };
 
   propagatedBuildInputs = [ six ];

From e96b38b3a5ad5b11bb781cd268463f2b18d0763d Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:25:49 +0200
Subject: [PATCH 049/294] python: jira: 1.0.15 -> 2.0.0

---
 pkgs/development/python-modules/jira/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jira/default.nix b/pkgs/development/python-modules/jira/default.nix
index ac4f45f4e9d..b9bc923e7e0 100644
--- a/pkgs/development/python-modules/jira/default.nix
+++ b/pkgs/development/python-modules/jira/default.nix
@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "jira";
-  version = "1.0.15";
+  version = "2.0.0";
 
   PBR_VERSION = version;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "20108a1d5b0dd058d5d4e0047f2d09ee06aaa413b22ca4d5c249e86167417fe8";
+    sha256 = "e2a94adff98e45b29ded030adc76103eab34fa7d4d57303f211f572bedba0e93";
   };
 
   buildInputs = [ glibcLocales pytest pytestcov pytestrunner pbr ];

From 97408bf8bb0646a21710b6ffa20c4a453652c3e4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:25:57 +0200
Subject: [PATCH 050/294] python: joblib: 0.12.1 -> 0.12.2

---
 pkgs/development/python-modules/joblib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/joblib/default.nix b/pkgs/development/python-modules/joblib/default.nix
index 8b42e6e1ea1..9133980754e 100644
--- a/pkgs/development/python-modules/joblib/default.nix
+++ b/pkgs/development/python-modules/joblib/default.nix
@@ -9,10 +9,10 @@
 
 buildPythonPackage rec {
   pname = "joblib";
-  version = "0.12.1";
+  version = "0.12.2";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "68e6128e4734196616a39e2d48830ec7d61551c7f5748849e4c91478d2444524";
+    sha256 = "e9f04885cf11704669f3a731ea6ac00bbc7dea16137aa4394ef7c272cdb9d008";
   };
 
   checkInputs = [ sphinx numpydoc pytest ];

From 660d04b657dd77c8fe348994a534a5c662323a2a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:26:04 +0200
Subject: [PATCH 051/294] python: junos-eznc: 2.1.8 -> 2.1.9

---
 pkgs/development/python-modules/junos-eznc/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/junos-eznc/default.nix b/pkgs/development/python-modules/junos-eznc/default.nix
index f72bec57e90..fb34f4696ee 100644
--- a/pkgs/development/python-modules/junos-eznc/default.nix
+++ b/pkgs/development/python-modules/junos-eznc/default.nix
@@ -15,11 +15,11 @@
 
 buildPythonPackage rec {
   pname = "junos-eznc";
-  version = "2.1.8";
+  version = "2.1.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "daa62e5abfc66ef12e4fb43a1c264673e662e6f2d937cd10666c1c6dcf2ac6ac";
+    sha256 = "a6729c35efd764e1f22457b72898bba554986466306ad29ad2d0bb071e997093";
   };
 
 

From 1e3880dd0ba4aefc5514d1220c1023bae3e07a6e Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:26:12 +0200
Subject: [PATCH 052/294] python: jupyterlab: 0.33.7 -> 0.33.10

---
 pkgs/development/python-modules/jupyterlab/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jupyterlab/default.nix b/pkgs/development/python-modules/jupyterlab/default.nix
index e47fdfa15ba..1ac5e85c404 100644
--- a/pkgs/development/python-modules/jupyterlab/default.nix
+++ b/pkgs/development/python-modules/jupyterlab/default.nix
@@ -1,12 +1,12 @@
 { lib, buildPythonPackage, isPy3k, fetchPypi, ipython_genutils, jupyterlab_launcher, notebook }:
 buildPythonPackage rec {
   pname = "jupyterlab";
-  version = "0.33.7";
+  version = "0.33.10";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ab9f7bcbc3b4e107897f368aa0527cdc1b4ccf0c370e218ae03ac1d75fac261c";
+    sha256 = "2f9147a2085541118923a71700733ecd1067630b4bc7d8be0ae8d0f9d8131bd9";
   };
 
   propagatedBuildInputs = [

From 3c357901f27753e1cb0b49e4f1dd8483fc70f9c6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:26:19 +0200
Subject: [PATCH 053/294] python: jupyterlab_launcher: 0.11.2 -> 0.13.1

---
 .../python-modules/jupyterlab_launcher/default.nix            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jupyterlab_launcher/default.nix b/pkgs/development/python-modules/jupyterlab_launcher/default.nix
index 79d22b6b1c9..1831b47ee79 100644
--- a/pkgs/development/python-modules/jupyterlab_launcher/default.nix
+++ b/pkgs/development/python-modules/jupyterlab_launcher/default.nix
@@ -1,11 +1,11 @@
 { lib, buildPythonPackage, fetchPypi, jsonschema, notebook }:
 buildPythonPackage rec {
   pname = "jupyterlab_launcher";
-  version = "0.11.2";
+  version = "0.13.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "236a647f4c3f8417413643a918a893a5f662fb5d2fdccce2fd101e3cca2e7fd1";
+    sha256 = "f880eada0b8b1f524d5951dc6fcae0d13b169897fc8a247d75fb5beadd69c5f0";
   };
 
   propagatedBuildInputs = [

From 9ee7e0208ec54cd442cc8d19368255189fccb910 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:26:26 +0200
Subject: [PATCH 054/294] python: ldap3: 2.5 -> 2.5.1

---
 pkgs/development/python-modules/ldap3/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/ldap3/default.nix b/pkgs/development/python-modules/ldap3/default.nix
index 24690d9d530..3735cbf5852 100644
--- a/pkgs/development/python-modules/ldap3/default.nix
+++ b/pkgs/development/python-modules/ldap3/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchPypi, buildPythonPackage, gssapi, pyasn1 }:
 
 buildPythonPackage rec {
-  version = "2.5";
+  version = "2.5.1";
   pname = "ldap3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "55078bbc981f715a8867b4c040402627fdfccf5664e0277a621416559748e384";
+    sha256 = "cc09951809678cfb693a13a6011dd2d48ada60a52bd80cb4bd7dcc55ee7c02fd";
   };
 
   buildInputs = [ gssapi ];

From 0bd401b65a8fb5c470897f958fe43fd2065f3c90 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:26:33 +0200
Subject: [PATCH 055/294] python: libagent: 0.11.3 -> 0.12.0

---
 pkgs/development/python-modules/libagent/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/libagent/default.nix b/pkgs/development/python-modules/libagent/default.nix
index 20312ed81d3..950a0dd5ba6 100644
--- a/pkgs/development/python-modules/libagent/default.nix
+++ b/pkgs/development/python-modules/libagent/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "libagent";
-  version = "0.11.3";
+  version = "0.12.0";
 
   src = fetchPypi{
     inherit pname version;
-    sha256 = "cb6199c3572e1223756465e758fb525e7f406a4808e9d7cfdddf089bec710047";
+    sha256 = "55af1ad2a6c95aef1fc5588c2002c9e54edbb14e248776b64d00628235ceda3e";
   };
 
   buildInputs = [

From 8cdc9e6cebbcccac95326dd950cdfea054adbb67 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:26:41 +0200
Subject: [PATCH 056/294] python: lxml: 4.2.3 -> 4.2.4

---
 pkgs/development/python-modules/lxml/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/lxml/default.nix b/pkgs/development/python-modules/lxml/default.nix
index 8589e47be21..3778098922a 100644
--- a/pkgs/development/python-modules/lxml/default.nix
+++ b/pkgs/development/python-modules/lxml/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "lxml";
-  version = "4.2.3";
+  version = "4.2.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "622f7e40faef13d232fb52003661f2764ce6cdef3edb0a59af7c1559e4cc36d1";
+    sha256 = "e2afbe403090f5893e254958d02875e0732975e73c4c0cdd33c1f009a61963ca";
   };
 
   buildInputs = [ libxml2 libxslt ];

From 430fb0d9760b8ffbac0ee94a1702dae72d69a124 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:26:49 +0200
Subject: [PATCH 057/294] python: m2r: 0.1.15 -> 0.2.0

---
 pkgs/development/python-modules/m2r/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/m2r/default.nix b/pkgs/development/python-modules/m2r/default.nix
index 4cb7744f3d9..8b1618515c8 100644
--- a/pkgs/development/python-modules/m2r/default.nix
+++ b/pkgs/development/python-modules/m2r/default.nix
@@ -2,11 +2,11 @@
   mistune, docutils } :
 buildPythonPackage rec {
   pname = "m2r";
-  version = "0.1.15";
+  version = "0.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1c358d8bf21ff70e569968d604a0e3c9b05fe01b5f362389235e97bc7c0cd542";
+    sha256 = "b64ee5ac870311a69967fe787be8607df67b02a329f0fc76c8bf477336a99c78";
   };
 
   propagatedBuildInputs = [ mistune docutils ];

From 00c912661e332c2cea68333ab499605c316d0392 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:26:56 +0200
Subject: [PATCH 058/294] python: marshmallow: 2.15.3 -> 2.15.4

---
 pkgs/development/python-modules/marshmallow/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/marshmallow/default.nix b/pkgs/development/python-modules/marshmallow/default.nix
index 242244726e5..20543faeb16 100644
--- a/pkgs/development/python-modules/marshmallow/default.nix
+++ b/pkgs/development/python-modules/marshmallow/default.nix
@@ -4,7 +4,7 @@
 
 buildPythonPackage rec {
   pname = "marshmallow";
-  version = "2.15.3";
+  version = "2.15.4";
 
   meta = {
     homepage = "https://github.com/marshmallow-code/marshmallow";
@@ -17,7 +17,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "171f409d48b44786b7df2793cbd7f1a9062f0fe2c14d547da536b5010f671ade";
+    sha256 = "0f3776aa5b5405f6000c9304841abe6d4d708bb08207fc89a5ecd86622ec9e54";
   };
 
   propagatedBuildInputs = [ dateutil simplejson ];

From 1bc66be7e8db45f9d2a40a93c81bed0314b845d0 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:27:04 +0200
Subject: [PATCH 059/294] python: matplotlib: 2.2.2 -> 2.2.3

---
 pkgs/development/python-modules/matplotlib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/matplotlib/default.nix b/pkgs/development/python-modules/matplotlib/default.nix
index 794124ef3bf..f9aa8cb2ebe 100644
--- a/pkgs/development/python-modules/matplotlib/default.nix
+++ b/pkgs/development/python-modules/matplotlib/default.nix
@@ -21,12 +21,12 @@ assert enableTk -> (tcl != null)
 assert enableQt -> pyqt4 != null;
 
 buildPythonPackage rec {
-  version = "2.2.2";
+  version = "2.2.3";
   pname = "matplotlib";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4dc7ef528aad21f22be85e95725234c5178c0f938e2228ca76640e5e84d8cde8";
+    sha256 = "7355bf757ecacd5f0ac9dd9523c8e1a1103faadf8d33c22664178e17533f8ce5";
   };
 
   NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1";

From 4aa2b4af19ca9cdbcc5a3d4619bd260927126867 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:27:12 +0200
Subject: [PATCH 060/294] python: more-itertools: 4.2.0 -> 4.3.0

---
 pkgs/development/python-modules/more-itertools/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/more-itertools/default.nix b/pkgs/development/python-modules/more-itertools/default.nix
index 6a58a6a8a28..c39bf461bec 100644
--- a/pkgs/development/python-modules/more-itertools/default.nix
+++ b/pkgs/development/python-modules/more-itertools/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "more-itertools";
-  version = "4.2.0";
+  version = "4.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2b6b9893337bfd9166bee6a62c2b0c9fe7735dcf85948b387ec8cba30e85d8e8";
+    sha256 = "c476b5d3a34e12d40130bc2f935028b5f636df8f372dc2c1c01dc19681b2039e";
   };
 
   checkInputs = [ nose ];

From ed3ee4e56dfff0a8cb0fac2b46ec3a6069d2a948 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:27:19 +0200
Subject: [PATCH 061/294] python: moto: 1.3.3 -> 1.3.4

---
 pkgs/development/python-modules/moto/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/moto/default.nix b/pkgs/development/python-modules/moto/default.nix
index cfb70724210..6d2c503d5ef 100644
--- a/pkgs/development/python-modules/moto/default.nix
+++ b/pkgs/development/python-modules/moto/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "moto";
-  version = "1.3.3";
+  version = "1.3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "45d14aca2b06b0083d5e82cfd770ebca0ba77b5070aec6928670240939a78681";
+    sha256 = "7c86d1c3bd6362954afaded735354c11afd22037eb6736152f057a1bff0c8868";
   };
 
   postPatch = ''

From db94f0620bebf25c3359c060c665807334df6bc6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:27:26 +0200
Subject: [PATCH 062/294] python: multipledispatch: 0.5.0 -> 0.6.0

---
 .../python-modules/multipledispatch/default.nix            | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/multipledispatch/default.nix b/pkgs/development/python-modules/multipledispatch/default.nix
index f568e53c573..8b2de6c5af1 100644
--- a/pkgs/development/python-modules/multipledispatch/default.nix
+++ b/pkgs/development/python-modules/multipledispatch/default.nix
@@ -1,20 +1,23 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, six
 }:
 
 buildPythonPackage rec {
   pname = "multipledispatch";
-  version = "0.5.0";
+  version = "0.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9e92d63efad2c9b68562175d9148d8cb32d04bf5557991190e643749bf4ed954";
+    sha256 = "a7ab1451fd0bf9b92cab3edbd7b205622fb767aeefb4fb536c2e3de9e0a38bea";
   };
 
   # No tests in archive
   doCheck = false;
 
+  propagatedBuildInputs = [ six ];
+
   meta = {
     homepage = https://github.com/mrocklin/multipledispatch/;
     description = "A relatively sane approach to multiple dispatch in Python";

From fafa17e93ea553bb6becb3f386413c9b159fb6a0 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:27:35 +0200
Subject: [PATCH 063/294] python: mutagen: 1.41.0 -> 1.41.1

---
 pkgs/development/python-modules/mutagen/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/mutagen/default.nix b/pkgs/development/python-modules/mutagen/default.nix
index 054d0247600..78271de6f69 100644
--- a/pkgs/development/python-modules/mutagen/default.nix
+++ b/pkgs/development/python-modules/mutagen/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "mutagen";
-  version = "1.41.0";
+  version = "1.41.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "dab6038c7f0e17c1b67fb8f56303e8be21e73ac47760f1a8e716856f1bdf5057";
+    sha256 = "2ea9c900a05fa7f5f4c5bd9fc1475d7d576532e13b2f79b694452b997ff67200";
   };
 
   checkInputs = [

From 3d9da297b2bd909db4e178f681898eb2baca3797 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:27:43 +0200
Subject: [PATCH 064/294] python: netCDF4: 1.4.0 -> 1.4.1

---
 pkgs/development/python-modules/netcdf4/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/netcdf4/default.nix b/pkgs/development/python-modules/netcdf4/default.nix
index 0baa323d53c..7e403fb9e56 100644
--- a/pkgs/development/python-modules/netcdf4/default.nix
+++ b/pkgs/development/python-modules/netcdf4/default.nix
@@ -3,13 +3,13 @@
 }:
 buildPythonPackage rec {
   pname = "netCDF4";
-  version = "1.4.0";
+  version = "1.4.1";
 
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a6c0b46f410f101c09d60b8cc460aafec06732f0130c6cb2730717bcc605b388";
+    sha256 = "d4fc65b98e348c39d082ab6b4b7f6d636b1b4e63bec016e5bca189fee5d46403";
   };
 
   checkInputs = [ pytest ];

From 0c0e408db90fb04a6ce16b37c8fdf445d2156a5f Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:27:50 +0200
Subject: [PATCH 065/294] python: nipype: 1.1.0 -> 1.1.2

---
 pkgs/development/python-modules/nipype/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/nipype/default.nix b/pkgs/development/python-modules/nipype/default.nix
index 3785986ad28..8b0ee06b349 100644
--- a/pkgs/development/python-modules/nipype/default.nix
+++ b/pkgs/development/python-modules/nipype/default.nix
@@ -34,11 +34,11 @@ assert !isPy3k -> configparser != null;
 
 buildPythonPackage rec {
   pname = "nipype";
-  version = "1.1.0";
+  version = "1.1.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2a5ebbc9244a18e3b2d83a9639da09248e92bc0742b81a86550ef1a18c1fccbc";
+    sha256 = "f2fe29bf863cb643bd5c8d2bdeaaf488308c293c9fb9913bc7a9504dc3bf8db6";
   };
 
   # see https://github.com/nipy/nipype/issues/2240

From b4eb92777c1ca22c7f9006936a8056a73fe3180a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:27:57 +0200
Subject: [PATCH 066/294] python: numexpr: 2.6.6 -> 2.6.7

---
 pkgs/development/python-modules/numexpr/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/numexpr/default.nix b/pkgs/development/python-modules/numexpr/default.nix
index 09f6c6636c1..0d9e0d2a6d0 100644
--- a/pkgs/development/python-modules/numexpr/default.nix
+++ b/pkgs/development/python-modules/numexpr/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "numexpr";
-  version = "2.6.6";
+  version = "2.6.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "97c1f7fa409439ae933494014cd41d43de84cfe6c98b7f93392f94d54de1b453";
+    sha256 = "3d007946b6c042fc9feb1db52dd0847d2f9b7f3175ae0591476ea80dcd664771";
   };
 
   propagatedBuildInputs = [ numpy ];

From f695fec875492784f7d58d0872c0b20e09c1c663 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:28:04 +0200
Subject: [PATCH 067/294] python: numpy: 1.14.5 -> 1.15.0

---
 pkgs/development/python-modules/numpy/default.nix | 12 ++++--------
 1 file changed, 4 insertions(+), 8 deletions(-)

diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix
index d9e884dabbe..96a3a524298 100644
--- a/pkgs/development/python-modules/numpy/default.nix
+++ b/pkgs/development/python-modules/numpy/default.nix
@@ -1,17 +1,17 @@
-{lib, fetchPypi, python, buildPythonPackage, isPyPy, gfortran, nose, blas, hostPlatform }:
+{lib, fetchPypi, python, buildPythonPackage, isPyPy, gfortran, pytest, blas, hostPlatform }:
 
 buildPythonPackage rec {
   pname = "numpy";
-  version = "1.14.5";
+  version = "1.15.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "a4a433b3a264dbc9aa9c7c241e87c0358a503ea6394f8737df1683c7c9a102ac";
+    sha256 = "f28e73cf18d37a413f7d5de35d024e6b98f14566a10d82100f9dc491a7d449f9";
   };
 
   disabled = isPyPy;
-  buildInputs = [ gfortran nose blas ];
+  buildInputs = [ gfortran pytest blas ];
 
   patches = lib.optionals (python.hasDistutilsCxxPatch or false) [
     # We patch cpython/distutils to fix https://bugs.python.org/issue1222585
@@ -56,10 +56,6 @@ buildPythonPackage rec {
     runHook postCheck
   '';
 
-  postInstall = ''
-    ln -s $out/bin/f2py* $out/bin/f2py
-  '';
-
   passthru = {
     blas = blas;
   };

From 3845d16dcc866b7642149120c59d79439bbe13ab Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:28:12 +0200
Subject: [PATCH 068/294] python: oauthenticator: 0.7.3 -> 0.8.0

---
 pkgs/development/python-modules/oauthenticator/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/oauthenticator/default.nix b/pkgs/development/python-modules/oauthenticator/default.nix
index 362554b9bb8..f35562d7c42 100644
--- a/pkgs/development/python-modules/oauthenticator/default.nix
+++ b/pkgs/development/python-modules/oauthenticator/default.nix
@@ -16,11 +16,11 @@
 
 buildPythonPackage rec {
   pname = "oauthenticator";
-  version = "0.7.3";
+  version = "0.8.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cb0b2564e46db28350693bc3e6457333c4ee21af5066ac743730e3f3173ea7ed";
+    sha256 = "39908f01cda98186c0fedc350b68342d6016ee325615f4c8475c1e64a55d9e4f";
   };
 
   checkPhase = ''

From b91d2777993799d42b7cd2461327e6ec015d7af4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:28:19 +0200
Subject: [PATCH 069/294] python: openpyxl: 2.5.4 -> 2.5.5

---
 pkgs/development/python-modules/openpyxl/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/openpyxl/default.nix b/pkgs/development/python-modules/openpyxl/default.nix
index 7b8f4602140..311b12c12ae 100644
--- a/pkgs/development/python-modules/openpyxl/default.nix
+++ b/pkgs/development/python-modules/openpyxl/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "openpyxl";
-  version = "2.5.4";
+  version = "2.5.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9239b74faf175dc4276a5fc277655fc53c2f704ded39e680d35e6a39e1913f69";
+    sha256 = "0f391b0035d7c98f25aad539726e8efc77eea250ff1a120ea7d264c03a16f5fe";
   };
 
   checkInputs = [ pytest ];

From 6e0424a77c4c390e0978a5c74c763ee88a438173 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:28:26 +0200
Subject: [PATCH 070/294] python: pandas: 0.23.3 -> 0.23.4

---
 pkgs/development/python-modules/pandas/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix
index 9e4ed217b92..1cc33ad51e3 100644
--- a/pkgs/development/python-modules/pandas/default.nix
+++ b/pkgs/development/python-modules/pandas/default.nix
@@ -28,11 +28,11 @@ let
 
 in buildPythonPackage rec {
   pname = "pandas";
-  version = "0.23.3";
+  version = "0.23.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9cd3614b4e31a0889388ff1bd19ae857ad52658b33f776065793c293a29cf612";
+    sha256 = "5b24ca47acf69222e82530e89111dd9d14f9b970ab2cd3a1c2c78f0c4fbba4f4";
   };
 
   checkInputs = [ pytest glibcLocales moto ];

From 66ccd57e5f6c4d1451397e59a4936416d7d5bead Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:28:34 +0200
Subject: [PATCH 071/294] python: pbr: 4.1.1 -> 4.2.0

---
 pkgs/development/python-modules/pbr/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pbr/default.nix b/pkgs/development/python-modules/pbr/default.nix
index 666df965f87..e1843e4a75d 100644
--- a/pkgs/development/python-modules/pbr/default.nix
+++ b/pkgs/development/python-modules/pbr/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pbr";
-  version = "4.1.1";
+  version = "4.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "754e766b4f4bad3aa68cfd532456298da1aa39375da8748392dbae90860d5f18";
+    sha256 = "1b8be50d938c9bb75d0eaf7eda111eec1bf6dc88a62a6412e33bf077457e0f45";
   };
 
   # circular dependencies with fixtures

From 7474dee69de0088a644604ab91d99c3c27398cf7 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:28:41 +0200
Subject: [PATCH 072/294] python: pendulum: 2.0.2 -> 2.0.3

---
 pkgs/development/python-modules/pendulum/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pendulum/default.nix b/pkgs/development/python-modules/pendulum/default.nix
index 5368a4f878e..e9d482e42ac 100644
--- a/pkgs/development/python-modules/pendulum/default.nix
+++ b/pkgs/development/python-modules/pendulum/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "pendulum";
-  version = "2.0.2";
+  version = "2.0.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "544e44d8a92954e5ef4db4fa8b662d3282f2ac7b7c2cbf4227dc193ba78b9e1e";
+    sha256 = "d07962450e808556b3e6209a5830e2bbf8c7747129580c3b5b09e641f72617ab";
   };
 
   propagatedBuildInputs = [ dateutil pytzdata ] ++ lib.optional (pythonOlder "3.5") typing;

From 00358af730bde3efa9b7cddf2a9a1762450eaacd Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:28:49 +0200
Subject: [PATCH 073/294] python: persistent: 4.2.4.2 -> 4.3.0

---
 pkgs/development/python-modules/persistent/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/persistent/default.nix b/pkgs/development/python-modules/persistent/default.nix
index 4f2e7f3ca84..b3c6bd755d8 100644
--- a/pkgs/development/python-modules/persistent/default.nix
+++ b/pkgs/development/python-modules/persistent/default.nix
@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "persistent";
-  version = "4.2.4.2";
+  version = "4.3.0";
 
   propagatedBuildInputs = [ zope_interface ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cf264cd55866c7ffbcbe1328f8d8b28fd042a5dd0c03a03f68c0887df3aa1964";
+    sha256 = "d8e2253a35f46ae318e65f0e3b51cdce16d4646e284a26f88a2d84b4d2507f81";
   };
 
   meta = {

From ed29f31cb9d40169d246ee14754673f0fd84f437 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:28:57 +0200
Subject: [PATCH 074/294] python: phonopy: 1.13.2.13 -> 1.13.2.107

---
 pkgs/development/python-modules/phonopy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/phonopy/default.nix b/pkgs/development/python-modules/phonopy/default.nix
index 57ddeeeb8ec..cf15ccc18fc 100644
--- a/pkgs/development/python-modules/phonopy/default.nix
+++ b/pkgs/development/python-modules/phonopy/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "phonopy";
-  version = "1.13.2.13";
+  version = "1.13.2.107";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "23970ecdf698e743f9204711e8edfbb33c97667f5f88c7bda3322abbc91d0682";
+    sha256 = "72f06728c98b9a7ab3db2d6fa2ae5d029029fbcff4e8fcfbc29f1e2620a0f905";
   };
 
   propagatedBuildInputs = [ numpy pyyaml matplotlib h5py ];

From 924f38f0d12cb2967caf5f019bc160e568d5705a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:29:04 +0200
Subject: [PATCH 075/294] python: plac: 0.9.6 -> 1.0.0

---
 pkgs/development/python-modules/plac/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/plac/default.nix b/pkgs/development/python-modules/plac/default.nix
index c16c8d3f750..d0e7b0d81ee 100644
--- a/pkgs/development/python-modules/plac/default.nix
+++ b/pkgs/development/python-modules/plac/default.nix
@@ -5,11 +5,11 @@
 }:
 buildPythonPackage rec {
   pname = "plac";
-  version = "0.9.6";
+  version = "1.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "16zqpalx4i1n1hrcvaj8sdixapy2g76fc13bbahz0xc106d72gxs";
+    sha256 = "b03f967f535b3bf5a71b191fa5eb09872a5cfb1e3b377efc4138995e10ba36d7";
   };
 
   checkPhase = ''

From c9667db797c466052127aca787d70fb831fa64dd Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:29:12 +0200
Subject: [PATCH 076/294] python: plotly: 3.1.0 -> 3.1.1

---
 pkgs/development/python-modules/plotly/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/plotly/default.nix b/pkgs/development/python-modules/plotly/default.nix
index 9d2df2a89eb..79648c8104b 100644
--- a/pkgs/development/python-modules/plotly/default.nix
+++ b/pkgs/development/python-modules/plotly/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "plotly";
-  version = "3.1.0";
+  version = "3.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "015a5b8ca616d19eb96433dd597c3ccccc80e3afba02a23bd526a017ff4fce05";
+    sha256 = "2e565c8907ea6f9c517423cf5452e4f4b85635bd0dd400aae943339c826d4176";
   };
 
   propagatedBuildInputs = [

From 5fab087fd3015b503e0bcf4d4a890ef36ad29492 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:29:19 +0200
Subject: [PATCH 077/294] python: pluggy: 0.6.0 -> 0.7.1

---
 pkgs/development/python-modules/pluggy/default.nix | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pluggy/default.nix b/pkgs/development/python-modules/pluggy/default.nix
index 2a6996c628e..236c0213392 100644
--- a/pkgs/development/python-modules/pluggy/default.nix
+++ b/pkgs/development/python-modules/pluggy/default.nix
@@ -1,15 +1,16 @@
 { buildPythonPackage
 , lib
 , fetchPypi
+, setuptools_scm
 }:
 
 buildPythonPackage rec {
   pname = "pluggy";
-  version = "0.6.0";
+  version = "0.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7f8ae7f5bdf75671a718d2daf0a64b7885f74510bcd98b1a0bb420eb9a9d0cff";
+    sha256 = "95eb8364a4708392bae89035f45341871286a333f749c3141c20573d2b3876e1";
   };
 
   checkPhase = ''
@@ -19,6 +20,8 @@ buildPythonPackage rec {
   # To prevent infinite recursion with pytest
   doCheck = false;
 
+  buildInputs = [ setuptools_scm ];
+
   meta = {
     description = "Plugin and hook calling mechanisms for Python";
     homepage = "https://pypi.python.org/pypi/pluggy";

From 2ff5927840804ddf5f0f6a56ab54e8bfdbbc5062 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:29:26 +0200
Subject: [PATCH 078/294] python: plumbum: 1.6.6 -> 1.6.7

---
 pkgs/development/python-modules/plumbum/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/plumbum/default.nix b/pkgs/development/python-modules/plumbum/default.nix
index 2c6eb7e5fbf..13afce05ef7 100644
--- a/pkgs/development/python-modules/plumbum/default.nix
+++ b/pkgs/development/python-modules/plumbum/default.nix
@@ -5,7 +5,7 @@
 
 buildPythonPackage rec {
   pname = "plumbum";
-  version = "1.6.6";
+  version = "1.6.7";
 
   checkInputs = [ pytest ];
 
@@ -14,6 +14,6 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d179b90a9927f91427a28c1bac2864c61342cb43ef39aa7324c7c9a96bcc23eb";
+    sha256 = "d143f079bfb60b11e9bec09a49695ce2e55ce5ca0246877bdb0818ab7c7fc312";
   };
 }
\ No newline at end of file

From 68d979f8eea87ef80af3ea959c6ec28df52ab654 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:29:34 +0200
Subject: [PATCH 079/294] python: plyfile: 0.5 -> 0.6

---
 pkgs/development/python-modules/plyfile/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/plyfile/default.nix b/pkgs/development/python-modules/plyfile/default.nix
index 1ac8afc8cfb..6a7f09a1451 100644
--- a/pkgs/development/python-modules/plyfile/default.nix
+++ b/pkgs/development/python-modules/plyfile/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "plyfile";
-  version = "0.5";
+  version = "0.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1cspvhfy2nw1rfwpvrd69wkz0b6clr4wzqpwpmdk872vk2q89yzi";
+    sha256 = "067e384e3723f28dbbd8e8f976a9712dadf6761b2d62c4c1a90821e3c5310bce";
   };
 
   propagatedBuildInputs = [ numpy ];

From 30b0f7521b691d45b54e9af8ae04720ba567918a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:29:41 +0200
Subject: [PATCH 080/294] python: prometheus_client: 0.3.0 -> 0.3.1

---
 pkgs/development/python-modules/prometheus_client/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/prometheus_client/default.nix b/pkgs/development/python-modules/prometheus_client/default.nix
index be014bc0f7e..4529ad95175 100644
--- a/pkgs/development/python-modules/prometheus_client/default.nix
+++ b/pkgs/development/python-modules/prometheus_client/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "prometheus_client";
-  version = "0.3.0";
+  version = "0.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "69494dc1ac967c0f626c8193e439755c2b95dd4ed22ef31c277601778a50c7ff";
+    sha256 = "17bc24c09431644f7c65d7bce9f4237252308070b6395d6d8e87767afe867e24";
   };
 
   doCheck = false;

From 4f1c7b2c7f252f6b2b77fbdf892e337cefcf9454 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:29:56 +0200
Subject: [PATCH 081/294] python: py3status: 3.11 -> 3.12

---
 pkgs/development/python-modules/py3status/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/py3status/default.nix b/pkgs/development/python-modules/py3status/default.nix
index e47771d5ca0..8a7dcc63f57 100644
--- a/pkgs/development/python-modules/py3status/default.nix
+++ b/pkgs/development/python-modules/py3status/default.nix
@@ -18,10 +18,10 @@
 
 buildPythonPackage rec {
   pname = "py3status";
-  version = "3.11";
+  version = "3.12";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ba6930427d57b79cf344262494fdcbddbf75f6e37794489d445f2ebb8bc53ec5";
+    sha256 = "c9ef49f72c2d83976d2841ab7e70faee3c77f4d7dbb2d3390ef0f0509473ea9a";
   };
   doCheck = false;
   propagatedBuildInputs = [ pytz requests tzlocal ];

From 9782a5a5dccfe1183d4133031ae755a5c90d24c2 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:30:03 +0200
Subject: [PATCH 082/294] python: pyaxmlparser: 0.3.9 -> 0.3.10

---
 pkgs/development/python-modules/pyaxmlparser/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyaxmlparser/default.nix b/pkgs/development/python-modules/pyaxmlparser/default.nix
index 483ad84eb66..7f9cbf9518e 100644
--- a/pkgs/development/python-modules/pyaxmlparser/default.nix
+++ b/pkgs/development/python-modules/pyaxmlparser/default.nix
@@ -1,12 +1,12 @@
 { buildPythonPackage, stdenv, lxml, click, fetchPypi }:
 
 buildPythonPackage rec {
-  version = "0.3.9";
+  version = "0.3.10";
   pname = "pyaxmlparser";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "af714d8adafcea776dd14cbd6d09f5d6d278f7ba333f540dde3b4c34f5f04784";
+    sha256 = "5c1f569f4dc2232d7f146eb190bc513373ff6555f97ae904740f966f0fb2dd77";
   };
 
   propagatedBuildInputs = [ lxml click ];

From f2e647b662ad82e463e6916863f35e3536349114 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:30:11 +0200
Subject: [PATCH 083/294] python: pycryptodome: 3.6.4 -> 3.6.5

---
 pkgs/development/python-modules/pycryptodome/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pycryptodome/default.nix b/pkgs/development/python-modules/pycryptodome/default.nix
index 27ccc7f4687..b4f044cf038 100644
--- a/pkgs/development/python-modules/pycryptodome/default.nix
+++ b/pkgs/development/python-modules/pycryptodome/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchPypi, buildPythonPackage }:
 
 buildPythonPackage rec {
-  version = "3.6.4";
+  version = "3.6.5";
   pname = "pycryptodome";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9c7790ffd291c81b934fe0ca8155a67235d33f70d4914bbf7467a447d9dbcb09";
+    sha256 = "99d653f3a92f35e3c768a142aa83c8c7b104a787655c51e25dca89ed778960b8";
   };
 
   meta = {

From 6c62513f6de46e7d38e5f83cfed1d63e4bedb1ae Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:30:18 +0200
Subject: [PATCH 084/294] python: pycryptodomex: 3.6.4 -> 3.6.5

---
 pkgs/development/python-modules/pycryptodomex/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pycryptodomex/default.nix b/pkgs/development/python-modules/pycryptodomex/default.nix
index b5487a24b77..c9741a46438 100644
--- a/pkgs/development/python-modules/pycryptodomex/default.nix
+++ b/pkgs/development/python-modules/pycryptodomex/default.nix
@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "pycryptodomex";
-  version = "3.6.4";
+  version = "3.6.5";
 
   meta = {
     description = "A self-contained cryptographic library for Python";
@@ -12,6 +12,6 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4daabe7c0404e673b9029aa43761c779b9b4df2cbe11ccd94daded6a0acd8808";
+    sha256 = "ff7d28474ef2134fe3027b53fa3cf13ed5f776ce15d6209b0e48fbc7592f9396";
   };
 }

From d3731041f827bf822e86dd59dd84f4a91dc0fb00 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:30:25 +0200
Subject: [PATCH 085/294] python: pycuda: 2017.1.1 -> 2018.1

---
 pkgs/development/python-modules/pycuda/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pycuda/default.nix b/pkgs/development/python-modules/pycuda/default.nix
index 2774a363f85..2d1da5339af 100644
--- a/pkgs/development/python-modules/pycuda/default.nix
+++ b/pkgs/development/python-modules/pycuda/default.nix
@@ -22,11 +22,11 @@ let
 in
 buildPythonPackage rec {
   pname = "pycuda";
-  version = "2017.1.1";
+  version = "2018.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0qxmcjax32p1ywicw9sha2rvfbak4kjbx9pq57j3wq4cwf296nkb";
+    sha256 = "7079f7738e83ee79ae26f0827ada29fe55921fec9760201199cc2bfb69446c92";
   };
 
   preConfigure = ''

From ac916967d4c1e2c5aade2ad035e84718eaa3527d Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:30:40 +0200
Subject: [PATCH 086/294] python: pylast: 2.3.0 -> 2.4.0

---
 pkgs/development/python-modules/pylast/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pylast/default.nix b/pkgs/development/python-modules/pylast/default.nix
index 89ae2f37d10..64479a7b5af 100644
--- a/pkgs/development/python-modules/pylast/default.nix
+++ b/pkgs/development/python-modules/pylast/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pylast";
-  version = "2.3.0";
+  version = "2.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f1e8615bac27386712ab74338e6dbd01ff7adbf6648a3debf921cef6bad80014";
+    sha256 = "8e883f13b70c3879fc821bbee1accf27ea4e68898f4462cbbe358f615adcbbfb";
   };
 
   propagatedBuildInputs = [ certifi six ];

From 99ae554b9ac023daf368306726d8cef8af32d652 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:30:48 +0200
Subject: [PATCH 087/294] python: pylint: 2.0.1 -> 2.1.1

---
 pkgs/development/python-modules/pylint/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pylint/default.nix b/pkgs/development/python-modules/pylint/default.nix
index 0156e92738a..c9a44548c14 100644
--- a/pkgs/development/python-modules/pylint/default.nix
+++ b/pkgs/development/python-modules/pylint/default.nix
@@ -3,13 +3,13 @@
 
 buildPythonPackage rec {
   pname = "pylint";
-  version = "2.0.1";
+  version = "2.1.1";
 
   disabled = pythonOlder "3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2c90a24bee8fae22ac98061c896e61f45c5b73c2e0511a4bf53f99ba56e90434";
+    sha256 = "31142f764d2a7cd41df5196f9933b12b7ee55e73ef12204b648ad7e556c119fb";
   };
 
   checkInputs = [ pytest pytestrunner pytest_xdist pyenchant ];

From 555e3ed264426cf3fe5e303673d3c6a4efe2cdbd Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:30:56 +0200
Subject: [PATCH 088/294] python: PyLTI: 0.6.0 -> 0.7.0

---
 pkgs/development/python-modules/pylti/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pylti/default.nix b/pkgs/development/python-modules/pylti/default.nix
index 600d6406405..32cef1e5da8 100644
--- a/pkgs/development/python-modules/pylti/default.nix
+++ b/pkgs/development/python-modules/pylti/default.nix
@@ -22,7 +22,7 @@
 
 buildPythonPackage rec {
   pname = "PyLTI";
-  version = "0.6.0";
+  version = "0.7.0";
 
   disabled = !isPy27;
 
@@ -39,7 +39,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b3203c5d0d8a527c092518d82d312757c036055ff628023985ab615ef471e602";
+    sha256 = "80938a235b1ab390f6889a95237d087ea7adde5cc50fcae9c80c49898e8ee78e";
   };
 
   meta = {

From 5a282a423eb9db6a5eb024da935e22a439046b23 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:31:04 +0200
Subject: [PATCH 089/294] python: pymatgen: 2018.6.27 -> 2018.8.10

---
 pkgs/development/python-modules/pymatgen/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pymatgen/default.nix b/pkgs/development/python-modules/pymatgen/default.nix
index 874f7bfa308..d810a5d6b4d 100644
--- a/pkgs/development/python-modules/pymatgen/default.nix
+++ b/pkgs/development/python-modules/pymatgen/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pymatgen";
-  version = "2018.6.27";
+  version = "2018.8.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8078af7fda4f9a07f1e389ffe08de3511213acdf9fb2ed9f9ffe89b9b12b8568";
+    sha256 = "9bb3b170ca8654c956fa2efdd31107570c0610f7585d90e4a541eb99cee41603";
   };
 
   nativeBuildInputs = [ glibcLocales ];

From f1dba212e7d50c7a88f3cfbce2e7bc241775afd0 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:31:11 +0200
Subject: [PATCH 090/294] python: pyowm: 2.8.0 -> 2.9.0

---
 pkgs/development/python-modules/pyowm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyowm/default.nix b/pkgs/development/python-modules/pyowm/default.nix
index 55f96416efd..58a8dee155a 100644
--- a/pkgs/development/python-modules/pyowm/default.nix
+++ b/pkgs/development/python-modules/pyowm/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pyowm";
-  version = "2.8.0";
+  version = "2.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0y2r322pcamabar70513pbyiq26x33l1aq9cim6k30lk9p4aq310";
+    sha256 = "ed175873823a2fedb48e453505c974ca39f3f75006ef1af54fdbcf72e6796849";
   };
 
   propagatedBuildInputs = [ requests ];

From 974d04eec68be5bd3d6ebb225012d1a1339eac20 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:31:19 +0200
Subject: [PATCH 091/294] python: pytest: 3.6.3 -> 3.7.1

---
 pkgs/development/python-modules/pytest/default.nix | 8 ++++----
 pkgs/top-level/python-packages.nix                 | 6 +++---
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/python-modules/pytest/default.nix b/pkgs/development/python-modules/pytest/default.nix
index 0e3f89fa152..9c158a55b81 100644
--- a/pkgs/development/python-modules/pytest/default.nix
+++ b/pkgs/development/python-modules/pytest/default.nix
@@ -1,9 +1,9 @@
 { stdenv, buildPythonPackage, fetchPypi, attrs, hypothesis, py
 , setuptools_scm, setuptools, six, pluggy, funcsigs, isPy3k, more-itertools
-, atomicwrites, mock, writeText
+, atomicwrites, mock, writeText, pathlib2
 }:
 buildPythonPackage rec {
-  version = "3.6.3";
+  version = "3.7.1";
   pname = "pytest";
 
   preCheck = ''
@@ -13,13 +13,13 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0453c8676c2bee6feb0434748b068d5510273a916295fd61d306c4f22fbfd752";
+    sha256 = "86a8dbf407e437351cef4dba46736e9c5a6e3c3ac71b2e942209748e76ff2086";
   };
 
   checkInputs = [ hypothesis mock ];
   buildInputs = [ setuptools_scm ];
   propagatedBuildInputs = [ attrs py setuptools six pluggy more-itertools atomicwrites]
-    ++ (stdenv.lib.optional (!isPy3k) funcsigs);
+    ++ stdenv.lib.optionals (!isPy3k) [ funcsigs pathlib2 ];
 
   checkPhase = ''
     runHook preCheck
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 322f831b4b5..20d665d7ed6 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1832,15 +1832,15 @@ in {
     };
   };
 
-  pytest = self.pytest_36;
+  pytest = self.pytest_37;
 
-  pytest_36 = callPackage ../development/python-modules/pytest {
+  pytest_37 = callPackage ../development/python-modules/pytest {
     # hypothesis tests require pytest that causes dependency cycle
     hypothesis = self.hypothesis.override { doCheck = false; };
   };
 
   # Needed for celery
-  pytest_32 = self.pytest_36.overridePythonAttrs( oldAttrs: rec {
+  pytest_32 = self.pytest_37.overridePythonAttrs( oldAttrs: rec {
     version = "3.2.5";
     src = oldAttrs.src.override {
       inherit version;

From 68dd59345ab29685fad5cfa723242e09ec3620ef Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:31:26 +0200
Subject: [PATCH 092/294] python: pytest-asyncio: 0.8.0 -> 0.9.0

---
 pkgs/development/python-modules/pytest-asyncio/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest-asyncio/default.nix b/pkgs/development/python-modules/pytest-asyncio/default.nix
index e1ff0998396..6d90521900f 100644
--- a/pkgs/development/python-modules/pytest-asyncio/default.nix
+++ b/pkgs/development/python-modules/pytest-asyncio/default.nix
@@ -1,13 +1,13 @@
 { stdenv, buildPythonPackage, fetchPypi, pytest, isPy3k }:
 buildPythonPackage rec {
   pname = "pytest-asyncio";
-  version = "0.8.0";
+  version = "0.9.0";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f32804bb58a66e13a3eda11f8942a71b1b6a30466b0d2ffe9214787aab0e172e";
+    sha256 = "fbd92c067c16111174a1286bfb253660f1e564e5146b39eeed1133315cf2c2cf";
   };
 
   buildInputs = [ pytest ];

From 86a55f9f3cadfb7b55954cfc77b0e67a2c0723ca Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:31:34 +0200
Subject: [PATCH 093/294] python: pytest-flakes: 3.0.2 -> 4.0.0

---
 pkgs/development/python-modules/pytest-flakes/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest-flakes/default.nix b/pkgs/development/python-modules/pytest-flakes/default.nix
index c8ae9882a1e..f8823b966da 100644
--- a/pkgs/development/python-modules/pytest-flakes/default.nix
+++ b/pkgs/development/python-modules/pytest-flakes/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "pytest-flakes";
-  version = "3.0.2";
+  version = "4.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "763ec290b89e2dc8f25f49d71cb9b869b8df843697b730233f61c78f847f2e57";
+    sha256 = "341964bf5760ebbdde9619f68a17d5632c674c3f6903ef66daa0a4f540b3d143";
   };
 
   buildInputs = [ pytestpep8 pytest ];

From bc8131047e6a041ff71c3213fe00a5853133aa02 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:31:41 +0200
Subject: [PATCH 094/294] python: pytest-xdist: 1.22.3 -> 1.22.5

---
 pkgs/development/python-modules/pytest-xdist/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest-xdist/default.nix b/pkgs/development/python-modules/pytest-xdist/default.nix
index 2e88a765417..34c94d6aacd 100644
--- a/pkgs/development/python-modules/pytest-xdist/default.nix
+++ b/pkgs/development/python-modules/pytest-xdist/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pytest-xdist";
-  version = "1.22.3";
+  version = "1.22.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "48868d1f461122ac8c5fb60487b6da03c0d73dcb06a9d79e06c4eab8ef62a5c3";
+    sha256 = "3308c4f6221670432d01e0b393b333d77c1fd805532e1d64450e8140855eb51b";
   };
 
   nativeBuildInputs = [ setuptools_scm ];

From a025deaa01569c3960764ba8e7c85350923bfbba Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:31:48 +0200
Subject: [PATCH 095/294] python: python-ctags3: 1.2.4 -> 1.3.0

---
 pkgs/development/python-modules/python-ctags3/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/python-ctags3/default.nix b/pkgs/development/python-modules/python-ctags3/default.nix
index ba29154df3a..c37abf7b55f 100644
--- a/pkgs/development/python-modules/python-ctags3/default.nix
+++ b/pkgs/development/python-modules/python-ctags3/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "python-ctags3";
-  version = "1.2.4";
+  version = "1.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "62e1d48a8cd88756767f3f5e3f1b1a81bc84deeb736f0c9480a5b5d066f63c3e";
+    sha256 = "69029185ec70db4180be2b58e9a7245700c7ddcdc9049bf0641448f439112176";
   };
 
   meta = with lib; {

From 36e7ea630f3323235bcbc27e20fb207b2a4d1a61 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:31:55 +0200
Subject: [PATCH 096/294] python: python_openzwave: 0.4.7 -> 0.4.9

---
 pkgs/development/python-modules/python_openzwave/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/python_openzwave/default.nix b/pkgs/development/python-modules/python_openzwave/default.nix
index d29365c86ba..e04915a503d 100644
--- a/pkgs/development/python-modules/python_openzwave/default.nix
+++ b/pkgs/development/python-modules/python_openzwave/default.nix
@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "python_openzwave";
-  version = "0.4.7";
+  version = "0.4.9";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b28a3abefc04d1d04dd68ee5a695b091e96ba7ab9a9eaa67db43dd55b61a4664";
+    sha256 = "97ddd104f52e3a4d7115c3de5d2136631d1f66627fc9b45d56956c3f2b6e0cdb";
     extension = "zip";
   };
 

From 56e306a1de6a8d77e2538dce47aaa74654debf10 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:32:02 +0200
Subject: [PATCH 097/294] python: pyunifi: 2.13 -> 2.14

---
 pkgs/development/python-modules/pyunifi/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyunifi/default.nix b/pkgs/development/python-modules/pyunifi/default.nix
index 31ec613df4c..e0bc32746e3 100644
--- a/pkgs/development/python-modules/pyunifi/default.nix
+++ b/pkgs/development/python-modules/pyunifi/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "pyunifi";
-  version = "2.13";
+  version = "2.14";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1dhbfzv5a29v763m0b9wsc4pvkdr979w7g4rz7ak8hsi4sx6b9dq";
+    sha256 = "9439ffc992ce381a39d64b5e3f4460e53872faa9cca60dcf5cee94fc0eba7fca";
   };
 
   propagatedBuildInputs = [ requests ];

From 09e6f5c583465d0a1fa6aa471709c98d8255b499 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:32:10 +0200
Subject: [PATCH 098/294] python: pyzmq: 17.1.0 -> 17.1.2

---
 pkgs/development/python-modules/pyzmq/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyzmq/default.nix b/pkgs/development/python-modules/pyzmq/default.nix
index 26c453e3a09..31b08d0a9e0 100644
--- a/pkgs/development/python-modules/pyzmq/default.nix
+++ b/pkgs/development/python-modules/pyzmq/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "pyzmq";
-  version = "17.1.0";
+  version = "17.1.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2199f753a230e26aec5238b0518b036780708a4c887d4944519681a920b9dee4";
+    sha256 = "a72b82ac1910f2cf61a49139f4974f994984475f771b0faa730839607eeedddf";
   };
 
   checkInputs = [  pytest tornado ];

From 386741823eccf7d47e132738493cb68b65f4d90c Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:32:18 +0200
Subject: [PATCH 099/294] python: rlp: 1.0.1 -> 1.0.2

---
 pkgs/development/python-modules/rlp/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/rlp/default.nix b/pkgs/development/python-modules/rlp/default.nix
index 381a784d24a..77ada95b301 100644
--- a/pkgs/development/python-modules/rlp/default.nix
+++ b/pkgs/development/python-modules/rlp/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "rlp";
-  version = "1.0.1";
+  version = "1.0.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "492c11b18e89af42f98e96bca7671ffee4ad4cf5e69ea23b4d2221157d81b512";
+    sha256 = "040fb5172fa23d27953a886c40cac989fc031d0629db934b5a9edcd2fb28df1e";
   };
 
   checkInputs = [ pytest ];

From e7dd0aed0069b9608ecab824feddd25c91d3899f Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:32:25 +0200
Subject: [PATCH 100/294] python: rope: 0.10.7 -> 0.11.0

---
 pkgs/development/python-modules/rope/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/rope/default.nix b/pkgs/development/python-modules/rope/default.nix
index db08ad2a5c0..e5164f27f56 100644
--- a/pkgs/development/python-modules/rope/default.nix
+++ b/pkgs/development/python-modules/rope/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "rope";
-  version = "0.10.7";
+  version = "0.11.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1lc01pjn0yr6yqcpbf6kk170zg8zhnyzj8kqlsch1mag0g9dz7m0";
+    sha256 = "a108c445e1cd897fe19272ab7877d172e7faf3d4148c80e7d20faba42ea8f7b2";
   };
 
   meta = with stdenv.lib; {

From 141438f0073a659015732d1ecf56e43c14964206 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:32:33 +0200
Subject: [PATCH 101/294] python: setuptools_scm: 2.1.0 -> 3.1.0

---
 pkgs/development/python-modules/setuptools_scm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/setuptools_scm/default.nix b/pkgs/development/python-modules/setuptools_scm/default.nix
index 1420428e973..f6e0daea5ad 100644
--- a/pkgs/development/python-modules/setuptools_scm/default.nix
+++ b/pkgs/development/python-modules/setuptools_scm/default.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPythonPackage, fetchPypi, pip }:
 buildPythonPackage rec {
   pname = "setuptools_scm";
-  version = "2.1.0";
+  version = "3.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a767141fecdab1c0b3c8e4c788ac912d7c94a0d6c452d40777ba84f918316379";
+    sha256 = "1191f2a136b5e86f7ca8ab00a97ef7aef997131f1f6d4971be69a1ef387d8b40";
   };
 
   buildInputs = [ pip ];

From 0bca28c89078ddc25aca0c1f8c50d3bafdd36412 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:32:41 +0200
Subject: [PATCH 102/294] python: shippai: 0.2.3 -> 0.3.1

---
 pkgs/development/python-modules/shippai/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/shippai/default.nix b/pkgs/development/python-modules/shippai/default.nix
index ac035061692..b386fe6c2fa 100644
--- a/pkgs/development/python-modules/shippai/default.nix
+++ b/pkgs/development/python-modules/shippai/default.nix
@@ -3,11 +3,11 @@
 buildPythonPackage rec {
   pname = "shippai";
   # Please make sure that vdirsyncer still builds if you update this package.
-  version = "0.2.3";
+  version = "0.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1ppwywzg4d12h658682ssmingm6ls6a96p4ak26i2w9d4lf8pfsc";
+    sha256 = "9e8d1ca5a742a7ea175cebda3090497d42348517e8d2f05f9854d0f30f1a48ad";
   };
 
   meta = with stdenv.lib; {

From adabd20893a963615523ab6e0ccf1c0701538c4a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:32:48 +0200
Subject: [PATCH 103/294] python: simpleeval: 0.9.5 -> 0.9.6

---
 pkgs/development/python-modules/simpleeval/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/simpleeval/default.nix b/pkgs/development/python-modules/simpleeval/default.nix
index b3377e75f67..831cfede950 100644
--- a/pkgs/development/python-modules/simpleeval/default.nix
+++ b/pkgs/development/python-modules/simpleeval/default.nix
@@ -2,10 +2,10 @@
 
 buildPythonPackage rec {
   pname = "simpleeval";
-  version = "0.9.5";
+  version = "0.9.6";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0sda13bqg9l4j17iczmfanxbzsg6fm9aw8i3crzsjfxx51rwj1i3";
+    sha256 = "848fdb9ee5f30cf93b9f0d840db6e7562633d20abf7d67c2382a0a2162a79410";
   };
   meta = {
     homepage = https://github.com/danthedeckie/simpleeval;

From 4e3e049c9e89de481b5eedb6deec403d15e9d4ee Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:32:55 +0200
Subject: [PATCH 104/294] python: snakeviz: 0.4.1 -> 1.0.0

---
 pkgs/development/python-modules/snakeviz/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/snakeviz/default.nix b/pkgs/development/python-modules/snakeviz/default.nix
index 9a3afc3fb4b..2b0ff6e443a 100644
--- a/pkgs/development/python-modules/snakeviz/default.nix
+++ b/pkgs/development/python-modules/snakeviz/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "snakeviz";
-  version = "0.4.1";
+  version = "1.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "18vsaw1wmf903fg21zkk6a9b49gj47g52jm5h52g4iygngjhpx79";
+    sha256 = "5fe23667708a4ed04047abfbf209675a8488ea6ea8c038d7de06d8a083fb3531";
   };
 
   # Upstream doesn't run tests from setup.py

From 6438ab2871bf6c319f55e9607793aaf38cd34b81 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:33:01 +0200
Subject: [PATCH 105/294] python: spglib: 1.10.4.1 -> 1.10.4.11

---
 pkgs/development/python-modules/spglib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/spglib/default.nix b/pkgs/development/python-modules/spglib/default.nix
index 9b51c445e73..7385387eb86 100644
--- a/pkgs/development/python-modules/spglib/default.nix
+++ b/pkgs/development/python-modules/spglib/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "spglib";
-  version = "1.10.4.1";
+  version = "1.10.4.11";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1a50c48dfea450c431a6d6790aa2ebbb10dc43eef97f2794f5038ed1eeecbd30";
+    sha256 = "13b0a227d2dc4079fe36d5bcce4e672400c7c5dfc5d3cd25ccb9521ef592d93e";
   };
 
   propagatedBuildInputs = [ numpy ];

From f25881563b635f2a60d95725bf5a79571c71328d Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:33:09 +0200
Subject: [PATCH 106/294] python: sqlmap: 1.2.7 -> 1.2.8

---
 pkgs/development/python-modules/sqlmap/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/sqlmap/default.nix b/pkgs/development/python-modules/sqlmap/default.nix
index 674d1e66f7e..5713d7591dc 100644
--- a/pkgs/development/python-modules/sqlmap/default.nix
+++ b/pkgs/development/python-modules/sqlmap/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "sqlmap";
-  version = "1.2.7";
+  version = "1.2.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9e570fcac05b3231d5e01398e496b88a78601938bba228e381994a1b3fe3bd88";
+    sha256 = "d261d93e7abed20543c261327d30b9f9936f0bed3c1a595f39218eeb66094526";
   };
 
   # No tests in archive

From 31911f1eebac58e1ff6330f40f7122a3aa1cde4d Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:33:16 +0200
Subject: [PATCH 107/294] python: stripe: 2.0.3 -> 2.4.0

---
 pkgs/development/python-modules/stripe/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/stripe/default.nix b/pkgs/development/python-modules/stripe/default.nix
index f2e4b946b5d..6c3e340c461 100644
--- a/pkgs/development/python-modules/stripe/default.nix
+++ b/pkgs/development/python-modules/stripe/default.nix
@@ -3,7 +3,7 @@
 
 buildPythonPackage rec {
   pname = "stripe";
-  version = "2.0.3";
+  version = "2.4.0";
 
   # Tests require network connectivity and there's no easy way to disable
   # them. ~ C.
@@ -11,7 +11,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "17a618541c19a48d5591f4011a282cbcbbe2d05c361109f8f5381aeec05eb270";
+    sha256 = "02c63cec551bba9b4785d156b518699e8ff0e6e6f96d00a72daa075683487202";
   };
 
   checkInputs = [ unittest2 mock ];

From 83b888eb79907475b03f19b9e33279eb4e435e62 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:33:24 +0200
Subject: [PATCH 108/294] python: sybil: 1.0.8 -> 1.0.9

---
 pkgs/development/python-modules/sybil/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/sybil/default.nix b/pkgs/development/python-modules/sybil/default.nix
index 6930cb2a559..c78016d7296 100644
--- a/pkgs/development/python-modules/sybil/default.nix
+++ b/pkgs/development/python-modules/sybil/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonApplication rec {
   pname   = "sybil";
-  version = "1.0.8";
+  version = "1.0.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1e17e10bac4c56ef5b6752866a7d100f5ae856ff97d805c4d6cac73be80863d3";
+    sha256 = "41d2f1dba8fd1d8ead5e9b1220b590fab8b0d1ca01d43da08555b1fb08d4d8e8";
   };
 
   checkInputs = [ pytest nose ];

From 19b030543a35292190af945e0f28c76ed79015ad Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:33:46 +0200
Subject: [PATCH 109/294] python: tox: 3.1.2 -> 3.2.1

---
 pkgs/development/python-modules/tox/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/tox/default.nix b/pkgs/development/python-modules/tox/default.nix
index 7719687f2ea..1cb9770367a 100644
--- a/pkgs/development/python-modules/tox/default.nix
+++ b/pkgs/development/python-modules/tox/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "tox";
-  version = "3.1.2";
+  version = "3.2.1";
 
   buildInputs = [ setuptools_scm ];
   propagatedBuildInputs = [ packaging pluggy py six virtualenv ];
@@ -20,7 +20,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9f0cbcc36e08c2c4ae90d02d3d1f9a62231f974bcbc1df85e8045946d8261059";
+    sha256 = "eb61aa5bcce65325538686f09848f04ef679b5cd9b83cc491272099b28739600";
   };
 
   meta = with lib; {

From 59c3a5e875ef41c1861108480e09a41c01f03ce9 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:33:53 +0200
Subject: [PATCH 110/294] python: tqdm: 4.23.4 -> 4.24.0

---
 pkgs/development/python-modules/tqdm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/tqdm/default.nix b/pkgs/development/python-modules/tqdm/default.nix
index fd5cd47be38..23a7a9dac6e 100644
--- a/pkgs/development/python-modules/tqdm/default.nix
+++ b/pkgs/development/python-modules/tqdm/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "tqdm";
-  version = "4.23.4";
+  version = "4.24.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "77b8424d41b31e68f437c6dd9cd567aebc9a860507cb42fbd880a5f822d966fe";
+    sha256 = "60bbaa6700e87a250f6abcbbd7ddb33243ad592240ba46afce5305b15b406fad";
   };
 
   buildInputs = [ nose coverage glibcLocales flake8 ];

From 30ad941dcd5227b318881f5907fbf77569506a8c Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:34:07 +0200
Subject: [PATCH 111/294] python: txaio: 2.10.0 -> 18.7.1

---
 pkgs/development/python-modules/txaio/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/txaio/default.nix b/pkgs/development/python-modules/txaio/default.nix
index 5558a7e339a..2bfdbae918a 100644
--- a/pkgs/development/python-modules/txaio/default.nix
+++ b/pkgs/development/python-modules/txaio/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "txaio";
-  version = "2.10.0";
+  version = "18.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4797f9f6a9866fe887c96abc0110a226dd5744c894dc3630870542597ad30853";
+    sha256 = "701de939e90bb80f7e085357081552437526752199def5541dddfc34c0b0593f";
   };
 
   checkInputs = [ pytest mock ];

From 53dd95a22a12e653a488fcac519635121e0e31e9 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:34:14 +0200
Subject: [PATCH 112/294] python: typeguard: 2.2.0 -> 2.2.1

---
 pkgs/development/python-modules/typeguard/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/typeguard/default.nix b/pkgs/development/python-modules/typeguard/default.nix
index a6eb75b53cf..de7a110a8f4 100644
--- a/pkgs/development/python-modules/typeguard/default.nix
+++ b/pkgs/development/python-modules/typeguard/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "typeguard";
-  version = "2.2.0";
+  version = "2.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e588ff78b7093fc31c3b00c78db09b9b3764157b03b867f25ccd1dd3efd96ffb";
+    sha256 = "89159e9ab54a436db4759c32eeb0ae6e9b65cf7fe5b838daad4a658024ec3b43";
   };
 
   buildInputs = [ setuptools_scm ];

From f42c1ef89847ea78dad7929f4e53e99f4ff43a48 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:34:21 +0200
Subject: [PATCH 113/294] python: uproot: 2.9.6 -> 2.9.11

---
 pkgs/development/python-modules/uproot/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/uproot/default.nix b/pkgs/development/python-modules/uproot/default.nix
index 368f787313b..e2cc1105f09 100644
--- a/pkgs/development/python-modules/uproot/default.nix
+++ b/pkgs/development/python-modules/uproot/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "uproot";
-  version = "2.9.6";
+  version = "2.9.11";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1fb8dd19bd1f1ed376a96e92b32ff44f7d3688bda55eda9055898111fdac8391";
+    sha256 = "da71e9e239129ec2ae7a62f9d35aebd46456f05e000ef14f32fe2c9fa8ec92c2";
   };
 
   propagatedBuildInputs = [

From 5dbc860c1fa661e7f19d04dea70b5631dc6450fa Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:34:29 +0200
Subject: [PATCH 114/294] python: voluptuous: 0.11.1 -> 0.11.5

---
 pkgs/development/python-modules/voluptuous/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/voluptuous/default.nix b/pkgs/development/python-modules/voluptuous/default.nix
index 0d4f250509f..b45a46b3a83 100644
--- a/pkgs/development/python-modules/voluptuous/default.nix
+++ b/pkgs/development/python-modules/voluptuous/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "voluptuous";
-  version = "0.11.1";
+  version = "0.11.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "af7315c9fa99e0bfd195a21106c82c81619b42f0bd9b6e287b797c6b6b6a9918";
+    sha256 = "567a56286ef82a9d7ae0628c5842f65f516abcb496e74f3f59f1d7b28df314ef";
   };
 
   checkInputs = [ nose ];

From b22dec2c51cfe220d3ca41909348eff61a6cc9c2 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:34:36 +0200
Subject: [PATCH 115/294] python: whitenoise: 4.0b4 -> 4.0

---
 pkgs/development/python-modules/whitenoise/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/whitenoise/default.nix b/pkgs/development/python-modules/whitenoise/default.nix
index d2359b2195f..007bb9c879b 100644
--- a/pkgs/development/python-modules/whitenoise/default.nix
+++ b/pkgs/development/python-modules/whitenoise/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "whitenoise";
-  version = "4.0b4";
+  version = "4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0ra2bbsihwfhnf1ibahzzabgfjfghxqcrbfx6r5r50mlil5n8bf4";
+    sha256 = "1e206c5adfb849942ddd057e599ac472ec1a85d56ae78a5ba24f243ea46a89c5";
   };
 
   # No tests

From b766bdbe69a7fa0185cddf2ea87a37cab69a2304 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:34:42 +0200
Subject: [PATCH 116/294] python: widgetsnbextension: 3.3.0 -> 3.4.0

---
 .../development/python-modules/widgetsnbextension/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/widgetsnbextension/default.nix b/pkgs/development/python-modules/widgetsnbextension/default.nix
index 0f102dda106..db992c7b932 100644
--- a/pkgs/development/python-modules/widgetsnbextension/default.nix
+++ b/pkgs/development/python-modules/widgetsnbextension/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "widgetsnbextension";
-  version = "3.3.0";
+  version = "3.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c5280a62d293735cdadc7b8884e2affcfb0488420ee09963577f042359726392";
+    sha256 = "c9d6e426a1d79d132b57b93b368feba2c66eb7b0fd34bdb901716b4b88e94497";
   };
 
   propagatedBuildInputs = [ notebook ];

From b62b9659b303219e69e99580197cf33c46cfc1f4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:34:49 +0200
Subject: [PATCH 117/294] python: zeep: 3.0.0 -> 3.1.0

---
 pkgs/development/python-modules/zeep/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/zeep/default.nix b/pkgs/development/python-modules/zeep/default.nix
index b14e0226d73..09beb9d8991 100644
--- a/pkgs/development/python-modules/zeep/default.nix
+++ b/pkgs/development/python-modules/zeep/default.nix
@@ -25,11 +25,11 @@
 
 buildPythonPackage rec {
   pname = "zeep";
-  version = "3.0.0";
+  version = "3.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "faab59d57275ce35845f42371cca83b3957982cdca9621228153fb99c770c4fc";
+    sha256 = "b2d96881689c3f29e8ea5c8c6abb2b17fb0f470deee15d0d7bec4e74592850f6";
   };
 
   propagatedBuildInputs = [

From 95ae8956cdc3f96baf1313ffb39e015fa62acfbc Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 09:34:57 +0200
Subject: [PATCH 118/294] python: zodbpickle: 1.0.1 -> 1.0.2

---
 pkgs/development/python-modules/zodbpickle/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/zodbpickle/default.nix b/pkgs/development/python-modules/zodbpickle/default.nix
index c3f41d281c6..746099368fb 100644
--- a/pkgs/development/python-modules/zodbpickle/default.nix
+++ b/pkgs/development/python-modules/zodbpickle/default.nix
@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "zodbpickle";
-  version = "1.0.1";
+  version = "1.0.2";
   disabled = isPyPy; # https://github.com/zopefoundation/zodbpickle/issues/10
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5fdfa84f05b25511a4e1190ec98728aa487e2eb6db016a951fdbb79bcc7307e0";
+    sha256 = "f26e6eba6550ff1575ef2f2831fc8bc0b465f17f9757d0b6c7db55fab5702061";
   };
 
   # fails..

From 381639716f7d72efffc6ec3f6530555c6349bcf3 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 11:44:06 +0200
Subject: [PATCH 119/294] pythonPackages.backports_lzma: fix build

---
 pkgs/development/python-modules/backports_lzma/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/python-modules/backports_lzma/default.nix b/pkgs/development/python-modules/backports_lzma/default.nix
index c650076d4c0..409546e559a 100644
--- a/pkgs/development/python-modules/backports_lzma/default.nix
+++ b/pkgs/development/python-modules/backports_lzma/default.nix
@@ -25,6 +25,9 @@ if !(pythonOlder "3.3") then null else buildPythonPackage rec {
     PYTHONPATH=$out/${python.sitePackages}:$PYTHONPATH ${python.interpreter} -m unittest discover -s test
   '';
 
+  # Relative import does not seem to function.
+  doCheck = false;
+
   meta = {
     description = "Backport of Python 3.3's 'lzma' module for XZ/LZMA compressed files";
     homepage = https://github.com/peterjc/backports.lzma;

From 4e659884f998d2dd9386a15762d31d1b7bb16214 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 11:51:42 +0200
Subject: [PATCH 120/294] pythonPackages.pytest_32: move into celery

as that's the only consumer of this version of Pytest.
---
 pkgs/development/python-modules/celery/default.nix | 13 ++++++++++++-
 pkgs/top-level/python-packages.nix                 | 11 +----------
 2 files changed, 13 insertions(+), 11 deletions(-)

diff --git a/pkgs/development/python-modules/celery/default.nix b/pkgs/development/python-modules/celery/default.nix
index 71911da08f4..8eef07ac3bb 100644
--- a/pkgs/development/python-modules/celery/default.nix
+++ b/pkgs/development/python-modules/celery/default.nix
@@ -2,7 +2,18 @@
   pytest, case, kombu, billiard, pytz, anyjson, amqp, eventlet
 }:
 
-buildPythonPackage rec {
+let
+
+  # Needed for celery
+  pytest_32 = pytest.overridePythonAttrs( oldAttrs: rec {
+    version = "3.2.5";
+    src = oldAttrs.src.override {
+      inherit version;
+      sha256 = "6d5bd4f7113b444c55a3bbb5c738a3dd80d43563d063fc42dcb0aaefbdd78b81";
+    };
+  });
+
+in buildPythonPackage rec {
   pname = "celery";
   version = "4.2.0";
 
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 20d665d7ed6..3b03287b4f3 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1455,7 +1455,7 @@ in {
     '';
   };
 
-  celery = callPackage ../development/python-modules/celery { pytest = self.pytest_32; };
+  celery = callPackage ../development/python-modules/celery { };
 
   cerberus = callPackage ../development/python-modules/cerberus { };
 
@@ -1839,15 +1839,6 @@ in {
     hypothesis = self.hypothesis.override { doCheck = false; };
   };
 
-  # Needed for celery
-  pytest_32 = self.pytest_37.overridePythonAttrs( oldAttrs: rec {
-    version = "3.2.5";
-    src = oldAttrs.src.override {
-      inherit version;
-      sha256 = "6d5bd4f7113b444c55a3bbb5c738a3dd80d43563d063fc42dcb0aaefbdd78b81";
-    };
-  });
-
   pytest-httpbin = callPackage ../development/python-modules/pytest-httpbin { };
 
   pytest-asyncio = callPackage ../development/python-modules/pytest-asyncio { };

From e6f18ba0e00e2ff4084f130d947e1fbc8703c1ae Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Mon, 13 Aug 2018 14:41:32 +0200
Subject: [PATCH 121/294] pythonPackages.jinja2: disable tests

---
 pkgs/development/python-modules/jinja2/default.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/jinja2/default.nix b/pkgs/development/python-modules/jinja2/default.nix
index 7432b3bb99c..b800303c20c 100644
--- a/pkgs/development/python-modules/jinja2/default.nix
+++ b/pkgs/development/python-modules/jinja2/default.nix
@@ -14,9 +14,12 @@ buildPythonPackage rec {
   propagatedBuildInputs = [ markupsafe ];
 
   checkPhase = ''
-    pytest -v
+    pytest -v tests
   '';
 
+  # RecursionError: maximum recursion depth exceeded
+  doCheck = false;
+
   meta = with stdenv.lib; {
     homepage = http://jinja.pocoo.org/;
     description = "Stand-alone template engine";

From 7a17ac0531d937870856f932c7ac454957992a7e Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:42:07 +0200
Subject: [PATCH 122/294] python: absl-py: 0.3.0 -> 0.4.0

---
 pkgs/development/python-modules/absl-py/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/absl-py/default.nix b/pkgs/development/python-modules/absl-py/default.nix
index 3dd40a20e6c..17a0240f7e8 100644
--- a/pkgs/development/python-modules/absl-py/default.nix
+++ b/pkgs/development/python-modules/absl-py/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "absl-py";
-  version = "0.3.0";
+  version = "0.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fcb729e9a3cf1a8f88f6c3a6465859c42116f23e1feb6208825eb88f3fd2b880";
+    sha256 = "932e6acb1a57bdcfb784a1ce6ad46a2f50b89d355a5619ed6df60db1414173d2";
   };
 
   propagatedBuildInputs = [ six ];

From 0dc21c5e27365f3ed750a0861bdf5db1d90e9cec Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:42:15 +0200
Subject: [PATCH 123/294] python: aiohue: 1.6.0 -> 1.7.0

---
 pkgs/development/python-modules/aiohue/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/aiohue/default.nix b/pkgs/development/python-modules/aiohue/default.nix
index 1492a15aadf..d5572bb6d1d 100644
--- a/pkgs/development/python-modules/aiohue/default.nix
+++ b/pkgs/development/python-modules/aiohue/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "aiohue";
-  version = "1.6.0";
+  version = "1.7.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "87f0f86865e88ea715ab358b1e5f2838b79ee7cdc0bdf762e9ed60aaf4c8bd4a";
+    sha256 = "26989babdc3f38575164b60b9536309271d58db005a03045b6e9cca4fc5201d8";
   };
 
   propagatedBuildInputs = [ aiohttp ];

From 69583398e8c2d87f7d20944676651b412b533d35 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:42:23 +0200
Subject: [PATCH 124/294] python: allpairspy: 2.4.0 -> 2.4.1

---
 pkgs/development/python-modules/allpairspy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/allpairspy/default.nix b/pkgs/development/python-modules/allpairspy/default.nix
index e21b43c60e0..d1f97d8e7c7 100644
--- a/pkgs/development/python-modules/allpairspy/default.nix
+++ b/pkgs/development/python-modules/allpairspy/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "allpairspy";
-  version = "2.4.0";
+  version = "2.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9fb7962ee523bd96c5098cd3c97ac1b8eb73021d3df9314657ee9de00f52e034";
+    sha256 = "e8b35751f91692bf0318091b3f44cdf9bbbe3f37a2ff4786eaffc09dc7114fb3";
   };
 
   propagatedBuildInputs = [ six ];

From c2c69186f59182a8b45c08fe2d123e49d5baa913 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:42:30 +0200
Subject: [PATCH 125/294] python: APScheduler: 3.5.2 -> 3.5.3

---
 pkgs/development/python-modules/APScheduler/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/APScheduler/default.nix b/pkgs/development/python-modules/APScheduler/default.nix
index 25d3bc0b505..f3c8c57f576 100644
--- a/pkgs/development/python-modules/APScheduler/default.nix
+++ b/pkgs/development/python-modules/APScheduler/default.nix
@@ -20,11 +20,11 @@
 
 buildPythonPackage rec {
   pname = "APScheduler";
-  version = "3.5.2";
+  version = "3.5.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6aba721f4db411be8f5ffe89acbaa174fe46425e15edf32ed7bfdfafb6ec1eb4";
+    sha256 = "6599bc78901ee7e9be85cbd073d9cc155c42d2bc867c5cde4d4d1cc339ebfbeb";
   };
 
   buildInputs = [

From db2cd1de468be902b2562273ab5843ad3837f84a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:42:37 +0200
Subject: [PATCH 126/294] python: argon2_cffi: 18.1.0 -> 18.3.0

---
 pkgs/development/python-modules/argon2_cffi/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/argon2_cffi/default.nix b/pkgs/development/python-modules/argon2_cffi/default.nix
index ce371076256..120928656b4 100644
--- a/pkgs/development/python-modules/argon2_cffi/default.nix
+++ b/pkgs/development/python-modules/argon2_cffi/default.nix
@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "argon2_cffi";
-  version = "18.1.0";
+  version = "18.3.0";
   name    = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7e4b75611b73f53012117ad21cdde7a17b32d1e99ff6799f22d827eb83a2a59b";
+    sha256 = "003f588de43a817af6ecc1c06103fa0801de63849db3cb0f37576bb2da29043d";
   };
 
   propagatedBuildInputs = [ cffi six ];

From aedf32c80957655096e0e691f27c441b3e236c9a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:42:44 +0200
Subject: [PATCH 127/294] python: autobahn: 18.7.1 -> 18.8.1

---
 pkgs/development/python-modules/autobahn/default.nix | 11 +++++------
 1 file changed, 5 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/python-modules/autobahn/default.nix b/pkgs/development/python-modules/autobahn/default.nix
index fac9fe48d5e..87a337a154d 100644
--- a/pkgs/development/python-modules/autobahn/default.nix
+++ b/pkgs/development/python-modules/autobahn/default.nix
@@ -1,22 +1,22 @@
 { stdenv, buildPythonPackage, fetchPypi, isPy3k, isPy33,
   unittest2, mock, pytest, trollius, asyncio,
-  pytest-asyncio, futures,
+  pytest-asyncio, futures, cffi,
   six, twisted, txaio, zope_interface
 }:
 buildPythonPackage rec {
   pname = "autobahn";
-  version = "18.7.1";
+  version = "18.8.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "163dd329c2a29f4ef82f7fe85a6f6e654a2aa6837bd83834cf537e4efa9204be";
+    sha256 = "b69858e0be4bff8437b0bd82a0db1cbef7405e16bd9354ba587c043d6d5e1ad9";
   };
 
   # Upstream claim python2 support, but tests require pytest-asyncio which
   # is pythn3 only. Therefore, tests are skipped for python2.
   doCheck = isPy3k;
-  buildInputs = stdenv.lib.optionals isPy3k [ unittest2 mock pytest pytest-asyncio ];
-  propagatedBuildInputs = [ six twisted zope_interface txaio ] ++
+  checkInputs = stdenv.lib.optionals isPy3k [ unittest2 mock pytest pytest-asyncio ];
+  propagatedBuildInputs = [ cffi six twisted zope_interface txaio ] ++
     (stdenv.lib.optional isPy33 asyncio) ++
     (stdenv.lib.optionals (!isPy3k) [ trollius futures ]);
 
@@ -29,6 +29,5 @@ buildPythonPackage rec {
     homepage    = "https://crossbar.io/autobahn";
     license     = licenses.mit;
     maintainers = with maintainers; [ nand0p ];
-    platforms   = platforms.all;
   };
 }

From c0321ebb179e4357331f45a08d3c5f58e4407451 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:42:51 +0200
Subject: [PATCH 128/294] python: bitmath: 1.3.1.2 -> 1.3.3.1

---
 pkgs/development/python-modules/bitmath/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/bitmath/default.nix b/pkgs/development/python-modules/bitmath/default.nix
index bb2e6046886..092ad6c1003 100644
--- a/pkgs/development/python-modules/bitmath/default.nix
+++ b/pkgs/development/python-modules/bitmath/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "bitmath";
-  version = "1.3.1.2";
+  version = "1.3.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1k8d1wmxqjc8cqzaixpxf45k6dl1kqhblr0g4wyjl0qa18q8wasd";
+    sha256 = "293325f01e65defe966853111df11d39215eb705a967cb115851da8c4cfa3eb8";
   };
 
   checkInputs = [ (if isPy3k then progressbar33 else progressbar231) mock ];

From d810c70f6cec9d0d68a7997774aa9e1dcc129490 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:42:58 +0200
Subject: [PATCH 129/294] python: bleach: 2.1.3 -> 2.1.4

---
 pkgs/development/python-modules/bleach/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/bleach/default.nix b/pkgs/development/python-modules/bleach/default.nix
index 786564b92e0..3c5f1d44190 100644
--- a/pkgs/development/python-modules/bleach/default.nix
+++ b/pkgs/development/python-modules/bleach/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "bleach";
-  version = "2.1.3";
+  version = "2.1.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "eb7386f632349d10d9ce9d4a838b134d4731571851149f9cc2c05a9a837a9a44";
+    sha256 = "0ee95f6167129859c5dce9b1ca291ebdb5d8cd7e382ca0e237dfd0dad63f63d8";
   };
 
   checkInputs = [ pytest pytestrunner ];

From 996fd7996713cdedc7e128d9930432c79d637f69 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:43:05 +0200
Subject: [PATCH 130/294] python: botocore: 1.10.75 -> 1.11.1

---
 pkgs/development/python-modules/botocore/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix
index 9875c4eaff6..32e527e8b67 100644
--- a/pkgs/development/python-modules/botocore/default.nix
+++ b/pkgs/development/python-modules/botocore/default.nix
@@ -7,15 +7,16 @@
 , simplejson
 , mock
 , nose
+, urllib3
 }:
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.10.75";
+  version = "1.11.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "82055917cb431c1cee7c737189a170cc92ffc3824a6da504e8d3ff4df9fa2eab";
+    sha256 = "5b2d2393c02a082d605dac13c1322c3c553a4d4cf23de7b48268ae7f4a105eb3";
   };
 
   propagatedBuildInputs = [
@@ -24,6 +25,7 @@ buildPythonPackage rec {
     docutils
     ordereddict
     simplejson
+    urllib3
   ];
 
   checkInputs = [ mock nose ];

From 89b89c06dd7412a9030e576caa4b07e807ce4204 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:43:12 +0200
Subject: [PATCH 131/294] python: bugwarrior: 1.5.1 -> 1.6.0

---
 pkgs/development/python-modules/bugwarrior/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/bugwarrior/default.nix b/pkgs/development/python-modules/bugwarrior/default.nix
index ada8397f975..844aebbbb96 100644
--- a/pkgs/development/python-modules/bugwarrior/default.nix
+++ b/pkgs/development/python-modules/bugwarrior/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "bugwarrior";
-  version = "1.5.1";
+  version = "1.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0kxknjbw5kchd88i577vlzibg8j60r7zzdhbnragj9wg5s3w60xb";
+    sha256 = "cfa4fac19b4f4638928347b8fe192315f72813c3e8ed668867e5891338c7e4ec";
   };
 
   buildInputs = [ mock unittest2 nose /* jira megaplan */ ];

From 25296ed8f348158c73014f0374ee440fcc116221 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:43:18 +0200
Subject: [PATCH 132/294] python: cement: 2.10.12 -> 3.0.0

---
 pkgs/development/python-modules/cement/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cement/default.nix b/pkgs/development/python-modules/cement/default.nix
index 9b744957540..8947ff436fa 100644
--- a/pkgs/development/python-modules/cement/default.nix
+++ b/pkgs/development/python-modules/cement/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "cement";
-  version = "2.10.12";
+  version = "3.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "58efb4eacd9ec977ce797a364a13851de6e42392bbde5287d44294f06c5a2f70";
+    sha256 = "e50e1033d61d18b36787a60d52cad0d3fe20780e7e2f78f0204bde32000645f9";
   };
 
   # Disable test tests since they depend on a memcached server running on

From 52f3e8ac0f6eb888d4995982735fa864b83b8832 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:43:26 +0200
Subject: [PATCH 133/294] python: certifi: 2018.8.13 -> 2018.8.24

---
 pkgs/development/python-modules/certifi/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/certifi/default.nix b/pkgs/development/python-modules/certifi/default.nix
index 429fd47f72e..40b3338fdec 100644
--- a/pkgs/development/python-modules/certifi/default.nix
+++ b/pkgs/development/python-modules/certifi/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "certifi";
-  version = "2018.8.13";
+  version = "2018.8.24";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4c1d68a1408dd090d2f3a869aa94c3947cc1d967821d1ed303208c9f41f0f2f4";
+    sha256 = "376690d6f16d32f9d1fe8932551d80b23e9d393a8578c5633a2ed39a64861638";
   };
 
   meta = {

From cffef355b0b47ca8a095eddcade2136243320d69 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:43:33 +0200
Subject: [PATCH 134/294] python: cftime: 1.0.0 -> 1.0.1

---
 pkgs/development/python-modules/cftime/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cftime/default.nix b/pkgs/development/python-modules/cftime/default.nix
index 425a53987ca..9190f274a24 100644
--- a/pkgs/development/python-modules/cftime/default.nix
+++ b/pkgs/development/python-modules/cftime/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "cftime";
-  version = "1.0.0";
+  version = "1.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f62fe79ed2ad38f4211477e59f6f045c91278351f4ce7578e33ddf52fb121ea8";
+    sha256 = "20556931f546838d09be5d589482dfae6164e0d403f0aab2163c006b680d3b92";
   };
 
   checkInputs = [ pytest coveralls pytestcov ];

From 236a2e57b9936892dbae90603bbf41a6a1ecb6a4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:43:41 +0200
Subject: [PATCH 135/294] python: chainer: 4.3.1 -> 4.4.0

---
 pkgs/development/python-modules/chainer/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/chainer/default.nix b/pkgs/development/python-modules/chainer/default.nix
index 80219c3f95a..d0467888a88 100644
--- a/pkgs/development/python-modules/chainer/default.nix
+++ b/pkgs/development/python-modules/chainer/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "chainer";
-  version = "4.3.1";
+  version = "4.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d56b769720ef9de93d5b74faea96729b076beb5362f97565654de3c723f2c822";
+    sha256 = "9cc4d43e1ea3e0766e211e4e755dbb879f2cf27a805cfa52e32b99fd1e5f24dd";
   };
 
   checkInputs = [

From e2d4d0a3b579c5668ba32ce40c924743953c3db3 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:43:49 +0200
Subject: [PATCH 136/294] python: channels: 2.1.2 -> 2.1.3

---
 pkgs/development/python-modules/channels/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/channels/default.nix b/pkgs/development/python-modules/channels/default.nix
index c63fe87dedc..cdcfc72000d 100644
--- a/pkgs/development/python-modules/channels/default.nix
+++ b/pkgs/development/python-modules/channels/default.nix
@@ -3,11 +3,11 @@
 }:
 buildPythonPackage rec {
   pname = "channels";
-  version = "2.1.2";
+  version = "2.1.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "173441ccf2ac3a93c3b4f86135db301cbe95be58f5815c1e071f2e7154c192a2";
+    sha256 = "8d503d18b92cef488ba68808a2205e055d29a6a1abae92d277f8f7a9c8752f13";
   };
 
   # Files are missing in the distribution

From 87232bc38266476277072f501118cb4f28c34050 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:49:58 +0000
Subject: [PATCH 137/294] [cpan2nix] perlPackages.ArchiveZip: 1.60 -> 1.62

---
 pkgs/top-level/perl-packages.nix | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 5add53c0dc2..5a455f9fc95 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -526,12 +526,11 @@ let
   };
 
   ArchiveZip = buildPerlPackage {
-    name = "Archive-Zip-1.60";
+    name = "Archive-Zip-1.62";
     src = fetchurl {
-      url = mirror://cpan/authors/id/P/PH/PHRED/Archive-Zip-1.60.tar.gz;
-      sha256 = "02y2ylq83hy9kgj57sc0239x65br9sm98c0chsm61s08yc2mpiza";
+      url = mirror://cpan/authors/id/P/PH/PHRED/Archive-Zip-1.62.tar.gz;
+      sha256 = "1jax173w7nm5r6k7ymfcskvs1rw590lyscbqrnfbkjj4cxc65wrb";
     };
-    buildInputs = [ TestMockModule ];
     meta = {
       description = "Provide an interface to ZIP archive files";
       license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ];

From 9fa1b9e0d8b232792febc0a75751950421cf754d Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:50:02 +0000
Subject: [PATCH 138/294] [cpan2nix] perlPackages.CPANPerlReleases: 3.70 ->
 3.74

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 5a455f9fc95..0046b300872 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -2870,10 +2870,10 @@ let
   };
 
   CPANPerlReleases = buildPerlPackage rec {
-    name = "CPAN-Perl-Releases-3.70";
+    name = "CPAN-Perl-Releases-3.74";
     src = fetchurl {
       url = "mirror://cpan/authors/id/B/BI/BINGOS/${name}.tar.gz";
-      sha256 = "1yv9gq3rzhccskmpd9nn2n8v8zc6r9rlq5x47l0yva29yfgqb16r";
+      sha256 = "0qdh79fl38cyq9kp2g2s934gl1nn5jd88rgmqarqcmja8xhpfcp3";
     };
     meta = {
       homepage = https://github.com/bingos/cpan-perl-releases;

From 0ed9c00de0fbb63c917be951377691296bd09924 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:50:13 +0000
Subject: [PATCH 139/294] [cpan2nix] perlPackages.CpanelJSONXS: 4.04 -> 4.05

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 0046b300872..a80fdda4c7a 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -2780,10 +2780,10 @@ let
   };
 
   CpanelJSONXS = buildPerlPackage rec {
-    name = "Cpanel-JSON-XS-4.04";
+    name = "Cpanel-JSON-XS-4.05";
     src = fetchurl {
       url = "mirror://cpan/authors/id/R/RU/RURBAN/${name}.tar.gz";
-      sha256 = "e128702a266b9a690bd3d380f726c229f9d6d795e8e206b9d32309d06825b2cd";
+      sha256 = "dd2b69265604ac6f18b47131565f712d55ed8df3b85f8f58f0c98cad17383663";
     };
     meta = {
       description = "CPanel fork of JSON::XS, fast and correct serializing";

From 7c523808fbe77d4a7888b9e97e1f0dfa7726934e Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:50:44 +0000
Subject: [PATCH 140/294] [cpan2nix] perlPackages.Filter: 1.58 -> 1.59

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index a80fdda4c7a..aa3bf8e4133 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -6255,10 +6255,10 @@ let
   };
 
   Filter = buildPerlPackage {
-    name = "Filter-1.58";
+    name = "Filter-1.59";
     src = fetchurl {
-      url = mirror://cpan/authors/id/R/RU/RURBAN/Filter-1.58.tar.gz;
-      sha256 = "6de91cb4cbfe08d0ccffbca39aed57f9237be602b8183f13fd163fc8cb657f3d";
+      url = mirror://cpan/authors/id/R/RU/RURBAN/Filter-1.59.tar.gz;
+      sha256 = "b4babfad4e0566a9a61199735f6e622a60d3274122752304f18f623412bf4e5a";
     };
     meta = {
       description = "Source Filters";

From f5db4a4669780acd48a5a6b54c321a83477fa5db Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:51:07 +0000
Subject: [PATCH 141/294] [cpan2nix] perlPackages.LogAny: 1.706 -> 1.707

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index aa3bf8e4133..24a33db8947 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -8760,10 +8760,10 @@ let
   };
 
   LogAny = buildPerlPackage rec {
-    name = "Log-Any-1.706";
+    name = "Log-Any-1.707";
     src = fetchurl {
       url = "mirror://cpan/authors/id/P/PR/PREACTION/${name}.tar.gz";
-      sha256 = "3ed0e5a4b7d490ab00624b7f905421239261f1dc976192aad2c0d1509bec08be";
+      sha256 = "74510f8cbee12637462e7c6020c8943d447a1e8e149a256f8168ee47562c65f1";
     };
     # Syslog test fails.
     preCheck = "rm t/syslog.t";

From bbc658ffde88ffecc1522fd6ca25a61cfb33c022 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:51:09 +0000
Subject: [PATCH 142/294] [cpan2nix] perlPackages.MLDBM: cleanup

---
 pkgs/top-level/perl-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 24a33db8947..fa2d6e624aa 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -9541,7 +9541,7 @@ let
     };
   };
 
-  MLDBM = buildPerlPackage rec {
+  MLDBM = buildPerlModule rec {
     name = "MLDBM-2.05";
     src = fetchurl {
       url = "mirror://cpan/authors/id/C/CH/CHORNY/${name}.tar.gz";

From ff1e4c79a515e4a6c9c416c933cc4f2379843937 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:51:14 +0000
Subject: [PATCH 143/294] [cpan2nix] perlPackages.ModuleCoreList: 5.20180720 ->
 5.20180820

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index fa2d6e624aa..e36e7530299 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -9715,10 +9715,10 @@ let
   };
 
   ModuleCoreList = buildPerlPackage {
-    name = "Module-CoreList-5.20180720";
+    name = "Module-CoreList-5.20180820";
     src = fetchurl {
-      url = mirror://cpan/authors/id/B/BI/BINGOS/Module-CoreList-5.20180720.tar.gz;
-      sha256 = "0l6dyj4m4qgv2yzq3pp0bkvg1j9nh9mcm1p4x3g3j93gkba7whws";
+      url = mirror://cpan/authors/id/B/BI/BINGOS/Module-CoreList-5.20180820.tar.gz;
+      sha256 = "1ccs5mqcfxjv8bax2nfsg11b2vc3sqyapfapxyzrjhaa2fmdn54l";
     };
     meta = {
       homepage = http://dev.perl.org/;

From 471b3f1dec0a077748083d181660c0c6ddd21086 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:51:17 +0000
Subject: [PATCH 144/294] [cpan2nix] perlPackages.Mojolicious: 7.88 -> 7.93

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index e36e7530299..8b3c7c27aee 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -10017,10 +10017,10 @@ let
     };
   };
   Mojolicious = buildPerlPackage rec {
-    name = "Mojolicious-7.88";
+    name = "Mojolicious-7.93";
     src = fetchurl {
       url = "mirror://cpan/authors/id/S/SR/SRI/${name}.tar.gz";
-      sha256 = "4c4c9c05131fcd175cd6370e15d2586baec1a3ec882cb6971e1f5f52b5e0d785";
+      sha256 = "00c30fc566fee0823af0a75bdf4f170531655df14beca6d51f0e453a43aaad5d";
     };
     meta = {
       homepage = https://mojolicious.org/;

From 433d1496458ba994f4b9ab656459e4e0811bbdcb Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:51:20 +0000
Subject: [PATCH 145/294] [cpan2nix] perlPackages.NetPing: 2.68 -> 2.70

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 8b3c7c27aee..89b5a773b1e 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -11334,10 +11334,10 @@ let
   };
 
   NetPing = buildPerlPackage {
-    name = "Net-Ping-2.68";
+    name = "Net-Ping-2.70";
     src = fetchurl {
-      url = mirror://cpan/authors/id/R/RU/RURBAN/Net-Ping-2.68.tar.gz;
-      sha256 = "d01ac2fcdf684c4a23a07104fbb147cfbdbda47fd5b660912124258f29afd7e3";
+      url = mirror://cpan/authors/id/R/RU/RURBAN/Net-Ping-2.70.tar.gz;
+      sha256 = "41400089736f528cfa1196083905d4bbd313c4653a03fab8578cebd5b5b6aa5a";
     };
     meta = {
       description = "Check a remote host for reachability";

From 2898f68e81f63fb85b27ec218c6fa2d032587c04 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:51:28 +0000
Subject: [PATCH 146/294] [cpan2nix] perlPackages.Paranoid: 2.05 -> 2.06

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 89b5a773b1e..34617a385fe 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -11848,10 +11848,10 @@ let
   };
 
   Paranoid = buildPerlPackage rec {
-    name = "Paranoid-2.05";
+    name = "Paranoid-2.06";
     src = fetchurl {
       url = "mirror://cpan/authors/id/C/CO/CORLISS/Paranoid/${name}.tar.gz";
-      sha256 = "583dfa0279733531f360795ad1cf4aa652d537b2b0bbd3c6925d0c8d75cbb3df";
+      sha256 = "48763ec19d0a4194ecf613bd63e46325510228da9100c2e796615dc778612d3c";
     };
     patches = [ ../development/perl-modules/Paranoid-blessed-path.patch ];
     preConfigure = ''

From a110976924d46ff0826219c454aad2b53bbe181e Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:51:29 +0000
Subject: [PATCH 147/294] [cpan2nix] perlPackages.PathTiny: 0.106 -> 0.108

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 34617a385fe..b5c9382aae7 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -11986,10 +11986,10 @@ let
   };
 
   PathTiny = buildPerlPackage {
-    name = "Path-Tiny-0.106";
+    name = "Path-Tiny-0.108";
     src = fetchurl {
-      url = mirror://cpan/authors/id/D/DA/DAGOLDEN/Path-Tiny-0.106.tar.gz;
-      sha256 = "308e39087b626013569a15783b896d61916fd1e67d06017f40cff567af36464d";
+      url = mirror://cpan/authors/id/D/DA/DAGOLDEN/Path-Tiny-0.108.tar.gz;
+      sha256 = "3c49482be2b3eb7ddd7e73a5b90cff648393f5d5de334ff126ce7a3632723ff5";
     };
     meta = {
       description = "File path utility";

From 9a2529672c14c594a246f43dc6a7a8f1960929d5 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:51:32 +0000
Subject: [PATCH 148/294] [cpan2nix] perlPackages.PkgConfig: 0.19026 -> 0.21026

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index b5c9382aae7..f20381a25a7 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -12242,10 +12242,10 @@ let
   };
 
   PkgConfig = buildPerlPackage rec {
-    name = "PkgConfig-0.19026";
+    name = "PkgConfig-0.21026";
     src = fetchurl {
       url = "mirror://cpan/authors/id/P/PL/PLICEASE/${name}.tar.gz";
-      sha256 = "5cb6e934d29dd93e04c2fa779f4b7e51361edaf56957b47a232017a4bb7e922c";
+      sha256 = "018f8d3c74e661df66046b26e57f4c5991adafe202af7ea2d1c6f6bcafde584b";
     };
     meta = {
       description = "Pure-Perl Core-Only replacement for pkg-config";

From ef498e603314b8ed7fbd95934dbb752c4fec977c Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:52:06 +0000
Subject: [PATCH 149/294] [cpan2nix] perlPackages.TestSimple13: 1.302138 ->
 1.302140

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index f20381a25a7..048fb305407 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -15837,10 +15837,10 @@ let
   };
 
   TestSimple13 = buildPerlPackage rec {
-    name = "Test-Simple-1.302138";
+    name = "Test-Simple-1.302140";
     src = fetchurl {
-      url = mirror://cpan/authors/id/E/EX/EXODIST/Test-Simple-1.302138.tar.gz;
-      sha256 = "568615a551075d3657cb0cbca55cf3672734c954f0306e9823ecd002aa911655";
+      url = mirror://cpan/authors/id/E/EX/EXODIST/Test-Simple-1.302140.tar.gz;
+      sha256 = "73f5440c7ae55e13706e9ebeaa7247df973226470f028344ea3cd21e1642bd1d";
     };
     meta = {
       description = "Basic utilities for writing tests";

From e6fa561afc84e28607a7b9b9b1091e286bcf1200 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:52:10 +0000
Subject: [PATCH 150/294] [cpan2nix] perlPackages.TextCSV: 1.95 -> 1.97

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 048fb305407..838a7cc30c0 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -16189,10 +16189,10 @@ let
   };
 
   TextCSV = buildPerlPackage rec {
-    name = "Text-CSV-1.95";
+    name = "Text-CSV-1.97";
     src = fetchurl {
-      url = mirror://cpan/authors/id/I/IS/ISHIGAKI/Text-CSV-1.95.tar.gz;
-      sha256 = "7e0a11d9c1129a55b68a26aa4b37c894279df255aa63ec8341d514ab848dbf61";
+      url = mirror://cpan/authors/id/I/IS/ISHIGAKI/Text-CSV-1.97.tar.gz;
+      sha256 = "cc350462efa8d39d5c8a1da5f205bc31620cd52d9865a769c8e3ed1b41640fd5";
     };
     meta = {
       description = "Comma-separated values manipulator (using XS or PurePerl)";

From ad6d0e42f7ba938b80d069d52adedf7aee230331 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:52:55 +0000
Subject: [PATCH 151/294] [cpan2nix] perlPackages.IOSocketSSL: 2.058 -> 2.059

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 838a7cc30c0..854524487b9 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -7781,10 +7781,10 @@ let
   };
 
   IOSocketSSL = buildPerlPackage rec {
-    name = "IO-Socket-SSL-2.058";
+    name = "IO-Socket-SSL-2.059";
     src = fetchurl {
       url = "mirror://cpan/authors/id/S/SU/SULLR/${name}.tar.gz";
-      sha256 = "746cd17c292cfc206b394497a060b0582d0b06a1040e6bb27e6530d56786e40b";
+      sha256 = "217debbe0a79f0b7c5669978b4d733271998df4497f4718f78456e5f54d64849";
     };
     propagatedBuildInputs = [ NetSSLeay ];
     # Fix path to default certificate store.

From c184a1be95034e7db06c6ba91b15871f10ab5db5 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:03 +0000
Subject: [PATCH 152/294] [cpan2nix] perlPackages.ModuleScanDeps: 1.24 -> 1.25

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 854524487b9..408da5a59b0 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -9938,11 +9938,11 @@ let
     };
   };
 
-  ModuleScanDeps = let version = "1.24"; in buildPerlPackage {
+  ModuleScanDeps = let version = "1.25"; in buildPerlPackage {
     name = "Module-ScanDeps-${version}";
     src = fetchurl {
       url = "mirror://cpan/authors/id/R/RS/RSCHUPP/Module-ScanDeps-${version}.tar.gz";
-      sha256 = "0s6cj90ckhy351gql52ksh4ms1x8piv26iadl09fcpzkx7j0srw9";
+      sha256 = "13280nq0d6zc58mcz3kvs2m85a741czq0fabk69ks1nr4j1w2nl4";
     };
     buildInputs = [ TestRequires ];
     meta = {

From 05e5a6dd0e3818621da1696574648b7267a19525 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:12 +0000
Subject: [PATCH 153/294] [cpan2nix] perlPackages.TypeTiny: 1.002002 ->
 1.004002

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 408da5a59b0..eff17c6e7e5 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -16981,10 +16981,10 @@ let
   };
 
   TypeTiny = buildPerlPackage {
-    name = "Type-Tiny-1.002002";
+    name = "Type-Tiny-1.004002";
     src = fetchurl {
-      url = mirror://cpan/authors/id/T/TO/TOBYINK/Type-Tiny-1.002002.tar.gz;
-      sha256 = "a85b0c8f99b5c9b5558f0bcc8893b44299fcccf3c264ff924940d09d91d8882c";
+      url = mirror://cpan/authors/id/T/TO/TOBYINK/Type-Tiny-1.004002.tar.gz;
+      sha256 = "e52c7e9593052aed157a15d473b5c25a1dbb3454bf3cd6913df94cc9bb2be707";
     };
     propagatedBuildInputs = [ ExporterTiny ];
     meta = {

From 4aae8f0fa6a86c3af51e24c8cef55082fd1d6b03 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:13 +0000
Subject: [PATCH 154/294] [cpan2nix] perlPackages.XMLParserLite: 0.721 -> 0.722

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index eff17c6e7e5..a38b03c344a 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -17687,10 +17687,10 @@ let
   };
 
   XMLParserLite = buildPerlPackage {
-    name = "XML-Parser-Lite-0.721";
+    name = "XML-Parser-Lite-0.722";
     src = fetchurl {
-      url = mirror://cpan/authors/id/P/PH/PHRED/XML-Parser-Lite-0.721.tar.gz;
-      sha256 = "1fh8g77nkfv9n07ivilnfxdapx6jx13whf8q0anrmnxrr9pa6qjq";
+      url = mirror://cpan/authors/id/P/PH/PHRED/XML-Parser-Lite-0.722.tar.gz;
+      sha256 = "1vk3jwh1kfcsmc5kvxzqdnb1cllvf0yf27fg0ra0w6jkw4ks143g";
     };
     buildInputs = [ TestRequires ];
     meta = {

From 0eda6c26a651f08e4d18e2b324233e7656fa8f10 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:28 +0000
Subject: [PATCH 155/294] [cpan2nix] perlPackages.NetDNS: 1.16 -> 1.17

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index a38b03c344a..4209b0486f4 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -11204,10 +11204,10 @@ let
   };
 
   NetDNS = buildPerlPackage rec {
-    name = "Net-DNS-1.16";
+    name = "Net-DNS-1.17";
     src = fetchurl {
       url = "mirror://cpan/authors/id/N/NL/NLNETLABS/${name}.tar.gz";
-      sha256 = "8163eebaf46d1a870b6f596684f345da7c3a7461d7dba2b85f23e02d8982ea37";
+      sha256 = "9a79fd8fea1a708726c18d193ae4437479206ccb20ffa7f0971371e172e2c2e0";
     };
     propagatedBuildInputs = [ DigestHMAC IOSocketIP ];
     makeMakerFlags = "--noonline-tests";

From fb58820af55bab2d9e7e8a272a92bd6da9077296 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:36 +0000
Subject: [PATCH 156/294] [cpan2nix] perlPackages.TextQuoted: 2.09 -> 2.10

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 4209b0486f4..ba28093e4e6 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -16390,10 +16390,10 @@ let
   };
 
   TextQuoted = buildPerlPackage {
-    name = "Text-Quoted-2.09";
+    name = "Text-Quoted-2.10";
     src = fetchurl {
-      url = mirror://cpan/authors/id/A/AL/ALEXMV/Text-Quoted-2.09.tar.gz;
-      sha256 = "446c3e8da7e65f7988cd36e9da1159614eb0b337d6c4c0dec8f6df7673b96c5f";
+      url = mirror://cpan/authors/id/B/BP/BPS/Text-Quoted-2.10.tar.gz;
+      sha256 = "081bf95ec9220af26cec89161e61bf73f9fbcbfeee1d9af15139e5d7b708f445";
     };
     propagatedBuildInputs = [ TextAutoformat ];
     meta = {

From dd8e22220368117b139bdb6dccbff8164a43a7a2 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:36 +0000
Subject: [PATCH 157/294] [cpan2nix] perlPackages.TextSimpleTable: 2.05 -> 2.07

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index ba28093e4e6..6c2bee3cf1f 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -16442,10 +16442,10 @@ let
   };
 
   TextSimpleTable = buildPerlPackage {
-    name = "Text-SimpleTable-2.05";
+    name = "Text-SimpleTable-2.07";
     src = fetchurl {
-      url = mirror://cpan/authors/id/M/MR/MRAMBERG/Text-SimpleTable-2.05.tar.gz;
-      sha256 = "1akcv3iq4y6mjc88p0j9yvv6g0g5cnc9nvzxnmsswnx5si7v5am5";
+      url = mirror://cpan/authors/id/M/MR/MRAMBERG/Text-SimpleTable-2.07.tar.gz;
+      sha256 = "1v8r8qpzg283p2pqqr8dqrak2bxray1b2jmib0qk75jffqw3yv95";
     };
     meta = {
       description = "Simple eyecandy ASCII tables";

From a8d2126f44608c4ab0fec7efa754e4d5ee3a360a Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:55 +0000
Subject: [PATCH 158/294] [cpan2nix] perlPackages.CGISimple: 1.15 -> 1.16

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 6c2bee3cf1f..1a4536761e0 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -1853,10 +1853,10 @@ let
   };
 
   CGISimple = buildPerlModule rec {
-    name = "CGI-Simple-1.15";
+    name = "CGI-Simple-1.16";
     src = fetchurl {
-      url = mirror://cpan/authors/id/M/MA/MANWAR/CGI-Simple-1.15.tar.gz;
-      sha256 = "013dcy9k4sj9alkksk5aqz65ryxw0rxgg71c7w666y941gd8n46q";
+      url = mirror://cpan/authors/id/M/MA/MANWAR/CGI-Simple-1.16.tar.gz;
+      sha256 = "1j07qy22a9k4g1xasxma7yzfmwwn3iy50rkxdhz8hz9f09hiym0f";
     };
     propagatedBuildInputs = [ IOStringy ];
     meta = {

From ee263f3371141e3c93a9922bfe4c3e2fea3ca17c Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:55 +0000
Subject: [PATCH 159/294] [cpan2nix] perlPackages.CarpAlways: 0.13 -> 0.16

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 1a4536761e0..f894f419a1a 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -1093,10 +1093,10 @@ let
   };
 
   CarpAlways = buildPerlPackage rec {
-    name = "Carp-Always-0.13";
+    name = "Carp-Always-0.16";
     src = fetchurl {
       url = "mirror://cpan/authors/id/F/FE/FERREIRA/${name}.tar.gz";
-      sha256 = "0i2rifkr7ybfcdsqana52487z7vxp2l5qdra0f6ik0ddhn6rzii1";
+      sha256 = "1wb6b0qjga7kvn4p8df6k4g1pl2yzaqiln1713xidh3i454i3alq";
     };
     meta = {
       description = "Warns and dies noisily with stack backtraces";

From f2dbd4ecb123a45cefce7f8b601686b9b1671446 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:53:55 +0000
Subject: [PATCH 160/294] [cpan2nix] perlPackages.Coro: 6.514 -> 6.52

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index f894f419a1a..78846878813 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -2740,10 +2740,10 @@ let
   };
 
   Coro = buildPerlPackage rec {
-     name = "Coro-6.514";
+     name = "Coro-6.52";
      src = fetchurl {
-       url = mirror://cpan/authors/id/M/ML/MLEHMANN/Coro-6.514.tar.gz;
-       sha256 = "0qndvq74knyra9r98pyllsxz0s80dzc1ljx10arjv9whja1l6cyq";
+       url = mirror://cpan/authors/id/M/ML/MLEHMANN/Coro-6.52.tar.gz;
+       sha256 = "1q744smw6m676v8n0ww8jvmh1zg1iw7f7clzblwbfgmhy03h5ja9";
      };
      propagatedBuildInputs = [ AnyEvent Guard commonsense ];
      buildInputs = [ CanaryStability ];

From 9d7599fb00e1b5e3bf160e794747ddc2538ee42b Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:54:01 +0000
Subject: [PATCH 161/294] [cpan2nix] perlPackages.PodMarkdown: 3.005 -> 3.101

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 78846878813..4bc6786156c 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -12932,10 +12932,10 @@ let
   };
 
   PodMarkdown = buildPerlPackage {
-    name = "Pod-Markdown-3.005";
+    name = "Pod-Markdown-3.101";
     src = fetchurl {
-      url = mirror://cpan/authors/id/R/RW/RWSTAUNER/Pod-Markdown-3.005.tar.gz;
-      sha256 = "00s3745kl4vbxqyi2lx149q5ghyfazc4fd00kcpl84bb87jfgdzq";
+      url = mirror://cpan/authors/id/R/RW/RWSTAUNER/Pod-Markdown-3.101.tar.gz;
+      sha256 = "0h7hx4k1c3k00cfnlf226bkxnxaz01705m10vxm9cxh52xn6pzz8";
     };
     buildInputs = [ TestDifferences ];
     meta = {

From 66e597d89389652f60a8887d0591f5a9100282d7 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:54:13 +0000
Subject: [PATCH 162/294] [cpan2nix] perlPackages.CGI: 4.38 -> 4.40

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 4bc6786156c..78b4577526c 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -1741,10 +1741,10 @@ let
   };
 
   CGI = buildPerlPackage rec {
-    name = "CGI-4.38";
+    name = "CGI-4.40";
     src = fetchurl {
       url = "mirror://cpan/authors/id/L/LE/LEEJO/${name}.tar.gz";
-      sha256 = "8c58f4a529bb92a914b22b7e64c5e31185c9854a4070a6dfad44fe5cc248e7d4";
+      sha256 = "10efff3061b3c31a33b3cc59f955aef9c88d57d12dbac46389758cef92f24f56";
     };
     buildInputs = [ TestDeep TestNoWarnings TestWarn ];
     propagatedBuildInputs = [ HTMLParser ];

From 79195003188d67d89bf1649ec49643d9ce7dc5e1 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:54:16 +0000
Subject: [PATCH 163/294] [cpan2nix] perlPackages.FileMimeInfo: 0.28 -> 0.29

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 78b4577526c..e2badab85a1 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -5936,10 +5936,10 @@ let
   };
 
   FileMimeInfo = buildPerlPackage rec {
-    name = "File-MimeInfo-0.28";
+    name = "File-MimeInfo-0.29";
     src = fetchurl {
-      url = mirror://cpan/authors/id/M/MI/MICHIELB/File-MimeInfo-0.28.tar.gz;
-      sha256 = "1ipbh63bkh1r2gy5g7q4bzhki8j29mm1jkhbv60p9vwsdys5s91a";
+      url = mirror://cpan/authors/id/M/MI/MICHIELB/File-MimeInfo-0.29.tar.gz;
+      sha256 = "1sh8r6vczyz08zm8vfsjmkg6a165wch54akjdrd1vbifcmwjg5pi";
     };
     doCheck = false; # Failed test 'desktop file is the right one'
     buildInputs = [ FileBaseDir FileDesktopEntry ];

From 0d0584ea4bc1f6ca5b9d59b719fced6e04372d66 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:00 +0000
Subject: [PATCH 164/294] [cpan2nix] perlPackages.MonitoringPlugin: 0.39 ->
 0.40

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index e2badab85a1..bd4047ad33c 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -10043,10 +10043,10 @@ let
   };
 
   MonitoringPlugin = buildPerlPackage rec {
-    name = "Monitoring-Plugin-0.39";
+    name = "Monitoring-Plugin-0.40";
     src = fetchurl {
       url = "mirror://cpan/authors/id/N/NI/NIERLEIN/${name}.tar.gz";
-      sha256 = "030cw86j8712z8rn66k935gbilb5rcj3lnk4n53vh1b2phrszvjw";
+      sha256 = "0vr3wwdn3zs246qwi04bqk8jir6l88j5m59jk97hmfyj4xz6pfpq";
     };
     propagatedBuildInputs = [ ClassAccessor ConfigTiny MathCalcUnits ParamsValidate ];
     meta = {

From dfb78acae5dde7db561fea43d2a00ef44c2ef964 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:04 +0000
Subject: [PATCH 165/294] [cpan2nix] perlPackages.GamesSolitaireVerify: 0.1800
 -> 0.1900

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index bd4047ad33c..29b563034e2 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -6353,10 +6353,10 @@ let
   };
 
   GamesSolitaireVerify = buildPerlModule {
-    name = "Games-Solitaire-Verify-0.1800";
+    name = "Games-Solitaire-Verify-0.1900";
     src = fetchurl {
-      url = mirror://cpan/authors/id/S/SH/SHLOMIF/Games-Solitaire-Verify-0.1800.tar.gz;
-      sha256 = "935ba997c49437a095adb39fd18233d5e378941aa9974df46e56aa6234f1fced";
+      url = mirror://cpan/authors/id/S/SH/SHLOMIF/Games-Solitaire-Verify-0.1900.tar.gz;
+      sha256 = "6b17847bd69da05ee089562cf40f2aac15e64c113175eca4fb501d4e86b48181";
     };
     buildInputs = [ TestDifferences ];
     propagatedBuildInputs = [ ClassXSAccessor ExceptionClass ListMoreUtils ];

From ad47c381bda2d38cddb96e15efd4ea5b4836f542 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:08 +0000
Subject: [PATCH 166/294] [cpan2nix] perlPackages.GetoptLongDescriptive: 0.102
 -> 0.103

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 29b563034e2..a3f3da1e099 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -6451,10 +6451,10 @@ let
   };
 
   GetoptLongDescriptive = buildPerlPackage rec {
-    name = "Getopt-Long-Descriptive-0.102";
+    name = "Getopt-Long-Descriptive-0.103";
     src = fetchurl {
       url = "mirror://cpan/authors/id/R/RJ/RJBS/${name}.tar.gz";
-      sha256 = "9ad4b98f294aa0515cc3150a1ae878d39e470762b78d8bd9df055eba9dea2846";
+      sha256 = "70e1bae7404a9dfb638b5d12e5bd4ea97e3bee743a4555909307d68e0111f4b2";
     };
     buildInputs = [ CPANMetaCheck TestFatal TestWarnings ];
     propagatedBuildInputs = [ ParamsValidate SubExporter ];

From 1b4b076e77a811dcebd6f59eafc14bcc5c8b03c3 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:10 +0000
Subject: [PATCH 167/294] [cpan2nix] perlPackages.ProtocolHTTP2: 1.08 -> 1.09

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index a3f3da1e099..e362c6bedd0 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -12664,11 +12664,11 @@ let
   };
 
   ProtocolHTTP2 = buildPerlModule rec {
-    name = "Protocol-HTTP2-1.08";
+    name = "Protocol-HTTP2-1.09";
 
     src = fetchurl {
       url = "mirror://cpan/authors/id/C/CR/CRUX/${name}.tar.gz";
-      sha256 = "06y1djgzbn340hixav85728dvp8mj2mx2qf5fzkqxh145g5q860g";
+      sha256 = "1bc0ybkqhv81dscgzlbr62w4zqjsidcikmkbjanzn83g2b6ia9nc";
     };
     buildInputs = [ AnyEvent ModuleBuildTiny NetSSLeay TestLeakTrace TestSharedFork TestTCP ];
   };

From b7010ba7566dae333e88566194de82e4051e35b6 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:16 +0000
Subject: [PATCH 168/294] [cpan2nix] perlPackages.PPIxRegexp: 0.061 -> 0.062

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index e362c6bedd0..2b20b3708cf 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -12552,10 +12552,10 @@ let
   };
 
   PPIxRegexp = buildPerlModule rec {
-    name = "PPIx-Regexp-0.061";
+    name = "PPIx-Regexp-0.062";
     src = fetchurl {
       url = "mirror://cpan/authors/id/W/WY/WYANT/${name}.tar.gz";
-      sha256 = "e2d63a4102024e15994c685672d30c6d708272a1600abcd6241e6f2c1b3b7c92";
+      sha256 = "1218fe4c94b3cb9d894c6cd8a69bb4172eac54ce083b70f7a8bf13868a5a0733";
     };
     propagatedBuildInputs = [ PPI ];
     meta = {

From c80bbbb9e3c433a597a6d7ea403b3cf3f5e46b9d Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:29 +0000
Subject: [PATCH 169/294] [cpan2nix] perlPackages.XMLSemanticDiff: 1.0006 ->
 1.0007

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 2b20b3708cf..cd120b69015 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -17801,10 +17801,10 @@ let
   };
 
   XMLSemanticDiff = buildPerlModule {
-    name = "XML-SemanticDiff-1.0006";
+    name = "XML-SemanticDiff-1.0007";
     src = fetchurl {
-      url = mirror://cpan/authors/id/S/SH/SHLOMIF/XML-SemanticDiff-1.0006.tar.gz;
-      sha256 = "1z0lkb7xzhw9calz4pbwzry2lqqpy6pw6pvfn2gv70ry1xqycr0k";
+      url = mirror://cpan/authors/id/P/PE/PERIGRIN/XML-SemanticDiff-1.0007.tar.gz;
+      sha256 = "1xd00821y795fy2rag8aizb5wsbbzfxgmdf9qwpvdxn3pgpyzz85";
     };
     propagatedBuildInputs = [ XMLParser ];
     meta = {

From fab711473cdc7741cc3278238fab35ce615ff528 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:32 +0000
Subject: [PATCH 170/294] [cpan2nix] perlPackages.Mouse: v2.5.4 -> v2.5.6

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index cd120b69015..bc67aa45928 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -10909,10 +10909,10 @@ let
   };
 
   Mouse = buildPerlModule rec {
-    name = "Mouse-2.5.4";
+    name = "Mouse-2.5.6";
     src = fetchurl {
-      url = mirror://cpan/authors/id/S/SK/SKAJI/Mouse-v2.5.4.tar.gz;
-      sha256 = "041nm46bxxyi1fd8w69r45k434b6m43va2s06pr3bys6igxic79d";
+      url = mirror://cpan/authors/id/S/SK/SKAJI/Mouse-v2.5.6.tar.gz;
+      sha256 = "1j3048ip691j91rdig6wrlg6i4jdzhszxmz5pi2g7n355rl2w00l";
     };
     buildInputs = [ DevelPPPort ModuleBuildXSUtil TestException TestFatal TestLeakTrace TestOutput TestRequires TryTiny self.version ];
     NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isi686 "-fno-stack-protector";

From c5a4ce386d74f408725ebf417b36e6b3c2652b68 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:37 +0000
Subject: [PATCH 171/294] [cpan2nix] perlPackages.RESTClient: cleanup

---
 pkgs/top-level/perl-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index bc67aa45928..a03dff5c3ce 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -13216,7 +13216,7 @@ let
       url = "mirror://cpan/authors/id/K/KK/KKANE/${name}.tar.gz";
       sha256 = "a8652a2214308faff2c68be5ce64c904dcccc5e86be7f32376c1590869d01844";
     };
-    propagatedBuildInputs = [ LWP LWPProtocolhttps URI ];
+    propagatedBuildInputs = [ LWPProtocolHttps ];
     meta = {
       description = "A simple client for interacting with RESTful http/https resources";
       license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ];

From 35227f7bcb144350f9d70b056da735e0b3170095 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:37 +0000
Subject: [PATCH 172/294] [cpan2nix] perlPackages.ApacheAuthCookie: cleanup

---
 pkgs/top-level/perl-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index a03dff5c3ce..5ae683b98d1 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -215,7 +215,7 @@ let
       url = "mirror://cpan/authors/id/M/MS/MSCHOUT/${name}.tar.gz";
       sha256 = "58daeb3e44c681ff88f8fb00e4aabaa7a40cbee73dbdb84fcf6c285b15d357bd";
     };
-    buildInputs = [ ApacheTest URI ];
+    buildInputs = [ ApacheTest ];
     propagatedBuildInputs = [ ClassLoad HTTPBody HashMultiValue WWWFormUrlEncoded ];
 
     # Fails because /etc/protocols is not available in sandbox and make

From 45e03cef9d3be8a85cbc3b378f419a51692afcc9 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:39 +0000
Subject: [PATCH 173/294] [cpan2nix] perlPackages.ParamsValidationCompiler:
 0.27 -> 0.30

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 5ae683b98d1..ac7b9f8ec15 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -11834,10 +11834,10 @@ let
   };
 
   ParamsValidationCompiler = buildPerlPackage rec {
-     name = "Params-ValidationCompiler-0.27";
+     name = "Params-ValidationCompiler-0.30";
      src = fetchurl {
-       url = mirror://cpan/authors/id/D/DR/DROLSKY/Params-ValidationCompiler-0.27.tar.gz;
-       sha256 = "1cpr188c2xm0kkmdir6slcsgv7v6ibqff4lax8s0whwx6ml9kaah";
+       url = mirror://cpan/authors/id/D/DR/DROLSKY/Params-ValidationCompiler-0.30.tar.gz;
+       sha256 = "1jqn1l4m4i341g14kmjsf3a1kn7vv6z89cix0xjjgr1v70iywnyw";
      };
      propagatedBuildInputs = [ EvalClosure ExceptionClass ];
      buildInputs = [ Specio Test2PluginNoWarnings Test2Suite TestSimple13 TestWithoutModule ];

From 1c613fdd8e418ce292d11f730338c88e262fb4af Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:55:42 +0000
Subject: [PATCH 174/294] [cpan2nix] perlPackages.NetDBus: cleanup

---
 pkgs/top-level/perl-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index ac7b9f8ec15..96c0c525ed1 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -11194,7 +11194,7 @@ let
       sha256 = "8391696db9e96c374b72984c0bad9c7d1c9f3b4efe68f9ddf429a77548e0e269";
     };
     nativeBuildInputs = [ pkgs.pkgconfig ];
-    buildInputs = [ TestPod TestPodCoverage pkgs.dbus ];
+    buildInputs = [ pkgs.dbus TestPod TestPodCoverage ];
     propagatedBuildInputs = [ XMLTwig ];
     meta = {
       homepage = http://www.freedesktop.org/wiki/Software/dbus;

From ea4aaa5c582c0dd00b2e72e6814848024ae866a4 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:56:04 +0000
Subject: [PATCH 175/294] [cpan2nix] perlPackages.DateTime: 1.49 -> 1.50

---
 pkgs/top-level/perl-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 96c0c525ed1..4cc673a2dd2 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -3643,10 +3643,10 @@ let
   };
 
   DateTime = buildPerlPackage rec {
-    name = "DateTime-1.49";
+    name = "DateTime-1.50";
     src = fetchurl {
       url = "mirror://cpan/authors/id/D/DR/DROLSKY/${name}.tar.gz";
-      sha256 = "0hbw4zq1562slnz7g7hyhfhyq98dzkk3i5g21x3xra5cvfix93kh";
+      sha256 = "165iqk1xvhs5j0kzsipa7aqycx3h37wqsl2r4jl104yqvmqhqszd";
     };
     buildInputs = [ CPANMetaCheck TestFatal TestWarnings ];
     propagatedBuildInputs = [ DateTimeLocale DateTimeTimeZone ];

From 6e9d2c5da9cec6af8a4b33babcd02c00e30d576d Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 12:56:31 +0000
Subject: [PATCH 176/294] [cpan2nix] perlPackages.MooseXGetopt: 0.71 -> 0.72

---
 pkgs/top-level/perl-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 4cc673a2dd2..7761e42f544 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -10479,12 +10479,12 @@ let
   };
 
   MooseXGetopt = buildPerlModule rec {
-    name = "MooseX-Getopt-0.71";
+    name = "MooseX-Getopt-0.72";
     src = fetchurl {
       url = "mirror://cpan/authors/id/E/ET/ETHER/${name}.tar.gz";
-      sha256 = "de18f8ea0a5650cbbdebecb8f4c028f5f951fc5698332f7b8e20c7874902c259";
+      sha256 = "a378411a061ed239554d2b7f86b2b82bf55f600901243a6ec3fd29557d171b2e";
     };
-    buildInputs = [ ModuleBuildTiny MooseXStrictConstructor PathTiny TestDeep TestFatal TestRequires TestTrap TestWarnings ];
+    buildInputs = [ ModuleBuildTiny MooseXStrictConstructor PathTiny TestDeep TestFatal TestNeeds TestTrap TestWarnings ];
     propagatedBuildInputs = [ GetoptLongDescriptive MooseXRoleParameterized ];
     meta = {
       homepage = https://github.com/moose/MooseX-Getopt;

From 9654348e8221014b97e89cf18c7e62b0c4893311 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sat, 25 Aug 2018 13:04:38 +0000
Subject: [PATCH 177/294] [cpan2nix] perlPackages.DBFile: 1.841 -> 1.842

---
 pkgs/development/perl-modules/DB_File/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/perl-modules/DB_File/default.nix b/pkgs/development/perl-modules/DB_File/default.nix
index b34ea387366..b3ca12421e4 100644
--- a/pkgs/development/perl-modules/DB_File/default.nix
+++ b/pkgs/development/perl-modules/DB_File/default.nix
@@ -1,11 +1,11 @@
 {fetchurl, buildPerlPackage, db}:
 
 buildPerlPackage rec {
-  name = "DB_File-1.841";
+  name = "DB_File-1.842";
 
   src = fetchurl {
     url = "mirror://cpan/authors/id/P/PM/PMQS/${name}.tar.gz";
-    sha256 = "11fks42kgscpia0mxx4lc9krm7q4gv6w7m5h3m2jr3dl7viv36hn";
+    sha256 = "0w2d99vs9qarng2f9fpg3gchfdzy6an13507jhclcl8wv183h5hg";
   };
 
   preConfigure = ''

From a6e0625f3799f44149d529c340c4e0659f3a0a66 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:43:57 +0200
Subject: [PATCH 178/294] python: CherryPy: 17.0.0 -> 17.3.0

---
 pkgs/development/python-modules/cherrypy/default.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/python-modules/cherrypy/default.nix b/pkgs/development/python-modules/cherrypy/default.nix
index e9ae4bde8cc..cb3c48c0882 100644
--- a/pkgs/development/python-modules/cherrypy/default.nix
+++ b/pkgs/development/python-modules/cherrypy/default.nix
@@ -1,20 +1,20 @@
 { lib, buildPythonPackage, fetchPypi
-, cheroot, portend, routes, six
-, setuptools_scm
+, cheroot, contextlib2, portend, routes, six
+, setuptools_scm, zc_lockfile
 , backports_unittest-mock, objgraph, pathpy, pytest, pytestcov
 , backports_functools_lru_cache, requests_toolbelt
 }:
 
 buildPythonPackage rec {
   pname = "CherryPy";
-  version = "17.0.0";
+  version = "17.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3cdb5fbae183db49ab1f1a90643d521aa060c93f90001cc99c19d8d15b7a3fb7";
+    sha256 = "c3e4d76232ade4c47666b9008f92556465df517b8dca833ece3bed027028ae7d";
   };
 
-  propagatedBuildInputs = [ cheroot portend routes six ];
+  propagatedBuildInputs = [ cheroot contextlib2 portend routes six zc_lockfile ];
 
   buildInputs = [ setuptools_scm ];
 

From 986aca49593aa17387a382fff5c4782a3c056760 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:44:05 +0200
Subject: [PATCH 179/294] python: cloudpickle: 0.5.3 -> 0.5.5

---
 pkgs/development/python-modules/cloudpickle/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cloudpickle/default.nix b/pkgs/development/python-modules/cloudpickle/default.nix
index acae5d73b2c..f70ebee411a 100644
--- a/pkgs/development/python-modules/cloudpickle/default.nix
+++ b/pkgs/development/python-modules/cloudpickle/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "cloudpickle";
-  version = "0.5.3";
+  version = "0.5.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "54858c7b7dc763ed894ff91059c1d0b017d593fe23850d3d8d75f47d98398197";
+    sha256 = "6ea4b548f61a4f616b065182716318c7dced8c053517f35ac59cec22802daf3d";
   };
 
   buildInputs = [ pytest mock ];

From ca7b397379c13e03055a19f33e2b6dd469279643 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:44:12 +0200
Subject: [PATCH 180/294] python: cmd2: 0.9.3 -> 0.9.4

---
 pkgs/development/python-modules/cmd2/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cmd2/default.nix b/pkgs/development/python-modules/cmd2/default.nix
index 1997c2389ab..4c2e78a102e 100644
--- a/pkgs/development/python-modules/cmd2/default.nix
+++ b/pkgs/development/python-modules/cmd2/default.nix
@@ -5,11 +5,11 @@
 }:
 buildPythonPackage rec {
   pname = "cmd2";
-  version = "0.9.3";
+  version = "0.9.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cffc94ad46425f80dfb243f53f456b11cea3f45e683504a60b64618a6d28b417";
+    sha256 = "0037dcf92331c63ae43e7e644536e646fff8be2fd5a83da06b3482f910f929c6";
   };
 
   LC_ALL="en_US.UTF-8";

From 9c838e9d5d8afa445bad15db93abac6e135ed99d Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:44:20 +0200
Subject: [PATCH 181/294] python: coveralls: 1.3.0 -> 1.4.0

---
 pkgs/development/python-modules/coveralls/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/coveralls/default.nix b/pkgs/development/python-modules/coveralls/default.nix
index f57e0fe8609..d0e26e2e07a 100644
--- a/pkgs/development/python-modules/coveralls/default.nix
+++ b/pkgs/development/python-modules/coveralls/default.nix
@@ -16,12 +16,12 @@
 buildPythonPackage rec {
   pname = "coveralls";
   name = "${pname}-python-${version}";
-  version = "1.3.0";
+  version = "1.4.0";
 
   # wanted by tests
   src = fetchPypi {
     inherit pname version;
-    sha256 = "664794748d2e5673e347ec476159a9d87f43e0d2d44950e98ed0e27b98da8346";
+    sha256 = "7ddb2e3114db9604a7cb1fcc68a7dcca32dce346f5ba568c99979b38e166f5a6";
   };
 
   checkInputs = [

From c9be5d27d6c6df7f66110b063449ca777a722ea4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:44:28 +0200
Subject: [PATCH 182/294] python: cryptography: 2.3 -> 2.3.1

---
 pkgs/development/python-modules/cryptography/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cryptography/default.nix b/pkgs/development/python-modules/cryptography/default.nix
index 52244ae4d96..2771e74e134 100644
--- a/pkgs/development/python-modules/cryptography/default.nix
+++ b/pkgs/development/python-modules/cryptography/default.nix
@@ -23,11 +23,11 @@
 buildPythonPackage rec {
   # also bump cryptography_vectors
   pname = "cryptography";
-  version = "2.3";
+  version = "2.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c132bab45d4bd0fff1d3fe294d92b0a6eb8404e93337b3127bdec9f21de117e6";
+    sha256 = "8d10113ca826a4c29d5b85b2c4e045ffa8bad74fb525ee0eceb1d38d4c70dfd6";
   };
 
   outputs = [ "out" "dev" ];

From 473adfa1e9312422b901d7bf0d5de2b43bbdd1a0 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:44:36 +0200
Subject: [PATCH 183/294] python: cryptography_vectors: 2.3 -> 2.3.1

---
 .../python-modules/cryptography_vectors/default.nix           | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cryptography_vectors/default.nix b/pkgs/development/python-modules/cryptography_vectors/default.nix
index ba896d29fc5..bcb60eb0d8d 100644
--- a/pkgs/development/python-modules/cryptography_vectors/default.nix
+++ b/pkgs/development/python-modules/cryptography_vectors/default.nix
@@ -5,11 +5,11 @@
 buildPythonPackage rec {
   # also bump cryptography
   pname = "cryptography_vectors";
-  version = "2.3";
+  version = "2.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "356a2ded84ae379e556515eec9b68dd74957651a38465d10605bb9fbae280f15";
+    sha256 = "bf4d9b61dce69c49e830950aa36fad194706463b0b6dfe81425b9e0bc6644d46";
   };
 
   # No tests included

From f086479e5f38daabcc395a9abd78ae8ee4bbfb6f Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:44:44 +0200
Subject: [PATCH 184/294] python: cupy: 4.3.0 -> 4.4.0

---
 pkgs/development/python-modules/cupy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cupy/default.nix b/pkgs/development/python-modules/cupy/default.nix
index 5d9ae10b09a..9a836e88752 100644
--- a/pkgs/development/python-modules/cupy/default.nix
+++ b/pkgs/development/python-modules/cupy/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "cupy";
-  version = "4.3.0";
+  version = "4.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ea818ff7f36cf6e5b3d3faef5af36a501c8bdeb78805820afa2999789ed698d5";
+    sha256 = "fca0e3d3fdad4c825197ea421bed0d253224b44daf738d82af5cba856c1c0b3e";
   };
 
   checkInputs = [

From b576eb9eb548560dfc8f8bb590daaaf1d6c1806c Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:44:52 +0200
Subject: [PATCH 185/294] python: python-debian: 0.1.32 -> 0.1.33

---
 pkgs/development/python-modules/debian/default.nix | 14 +++++++++++---
 1 file changed, 11 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/python-modules/debian/default.nix b/pkgs/development/python-modules/debian/default.nix
index e4cd21bce4a..f09195b6dc5 100644
--- a/pkgs/development/python-modules/debian/default.nix
+++ b/pkgs/development/python-modules/debian/default.nix
@@ -1,14 +1,22 @@
-{ buildPythonPackage, fetchPypi
+{ lib, buildPythonPackage, fetchPypi
 , chardet, six}:
 
 buildPythonPackage rec {
   pname = "python-debian";
-  version = "0.1.32";
+  version = "0.1.33";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "143887ac647ad30819f289f5a4ca13b77e56df27b686b84c34669447f7591280";
+    sha256 = "06e91d45019fe5f2e111ba827ea77730d6ce2fea698ada4e5b0b70b5fdbc18c5";
   };
 
   propagatedBuildInputs = [ chardet six ];
+
+  # No tests in archive
+  doCheck = false;
+
+  meta = {
+    description = "Debian package related modules";
+    license = lib.licenses.gpl2;
+  };
 }

From 90b64be3bed67982b984a4168a43b111e9789033 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:45:00 +0200
Subject: [PATCH 186/294] python: detox: 0.12 -> 0.13

---
 pkgs/development/python-modules/detox/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/detox/default.nix b/pkgs/development/python-modules/detox/default.nix
index 7c3aa87e9b8..3e2c814292b 100644
--- a/pkgs/development/python-modules/detox/default.nix
+++ b/pkgs/development/python-modules/detox/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "detox";
-  version = "0.12";
+  version = "0.13";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "06svvkszg6xlg0fr471smn4rmpfga960d6qqsyhyiwa48k59n4gk";
+    sha256 = "f0c2af9c29f8e200a50b561ccc531df3087c80e7d3de6cfa9828f5fea3c8f56c";
   };
 
   buildInputs = [ pytest ];

From 9a482bef6f721fe8973619220d4f50cada0220d5 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:45:16 +0200
Subject: [PATCH 187/294] python: easydict: 1.7 -> 1.8

---
 pkgs/development/python-modules/easydict/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/easydict/default.nix b/pkgs/development/python-modules/easydict/default.nix
index eb98cd18ef2..aed91033e97 100644
--- a/pkgs/development/python-modules/easydict/default.nix
+++ b/pkgs/development/python-modules/easydict/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "easydict";
-  version = "1.7";
+  version = "1.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1xpnwjdw4x5kficjgcajqcal6bxcb0ax8l6hdkww9fp6lrh28x8v";
+    sha256 = "f1ec91110737a62fe28d14970ffa7a7c7b441a32e35a6f3da6a6082ffb7f9432";
   };
 
   docheck = false; # No tests in archive

From adf9bf2cb7776db455c794212bb16757e67d6cb2 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:45:32 +0200
Subject: [PATCH 188/294] python: fastrlock: 0.3 -> 0.4

---
 pkgs/development/python-modules/fastrlock/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/fastrlock/default.nix b/pkgs/development/python-modules/fastrlock/default.nix
index 848f01d6e16..9b553e65db6 100644
--- a/pkgs/development/python-modules/fastrlock/default.nix
+++ b/pkgs/development/python-modules/fastrlock/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "fastrlock";
-  version = "0.3";
+  version = "0.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "00mr9b15d539z89ng5nf89s2ryhk90xwx95jal77ma0wslixrk5d";
+    sha256 = "6abdbb35205792e2d2a8c441aaa41a613d43ee2d88b3af4fd9735ae7a5f7db6b";
   };
 
   meta = with stdenv.lib; {

From a329fcb1bd93ca5db5a717ed3c3635b0960fa1bf Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:45:40 +0200
Subject: [PATCH 189/294] python: filelock: 3.0.4 -> 3.0.6

---
 pkgs/development/python-modules/filelock/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/filelock/default.nix b/pkgs/development/python-modules/filelock/default.nix
index 46d26e80d56..cfa0e1be74f 100644
--- a/pkgs/development/python-modules/filelock/default.nix
+++ b/pkgs/development/python-modules/filelock/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "filelock";
-  version = "3.0.4";
+  version = "3.0.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "011327d4ed939693a5b28c0fdf2fd9bda1f68614c1d6d0643a89382ce9843a71";
+    sha256 = "59ccab92fe118da7e5ce5a9fcd95506ade58d9d5f606db4922192524edfac820";
   };
 
   meta = with stdenv.lib; {

From 7475ec08368a6349519df793f2af93b41ce4c918 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:45:55 +0200
Subject: [PATCH 190/294] python: gevent: 1.3.5 -> 1.3.6

---
 pkgs/development/python-modules/gevent/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/gevent/default.nix b/pkgs/development/python-modules/gevent/default.nix
index cd28a4976a9..50953fd7d3f 100644
--- a/pkgs/development/python-modules/gevent/default.nix
+++ b/pkgs/development/python-modules/gevent/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "gevent";
-  version = "1.3.5";
+  version = "1.3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7f15861f3cc92f49663ca88c4774d26d8044783a65fbc28071a2bd1c7bf36ff0";
+    sha256 = "7b413c391e8ad6607b7f7540d698a94349abd64e4935184c595f7cdcc69904c6";
   };
 
   buildInputs = [ libev ];

From b37bbdac3cd850229186060beb22c10d389a9427 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:02 +0200
Subject: [PATCH 191/294] python: IBMQuantumExperience: 2.0.1 -> 2.0.2

---
 .../python-modules/ibmquantumexperience/default.nix           | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/ibmquantumexperience/default.nix b/pkgs/development/python-modules/ibmquantumexperience/default.nix
index 9ded458312f..82f6cb144ac 100644
--- a/pkgs/development/python-modules/ibmquantumexperience/default.nix
+++ b/pkgs/development/python-modules/ibmquantumexperience/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "IBMQuantumExperience";
-  version = "2.0.1";
+  version = "2.0.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ed164685ab743a4b216275f147227568ce27077068af33d0bd9a301ab1639e6e";
+    sha256 = "f2a5662d7457c297af0751985979e64a88569beb07cfedad0ce1dfa5a7237842";
   };
 
   propagatedBuildInputs = [

From 67a9cf5aed6ed998fed260ef1ae9ec4f5b41cb3c Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:09 +0200
Subject: [PATCH 192/294] python: jsonrpc-async: 1.0.0 -> 1.0.1

---
 pkgs/development/python-modules/jsonrpc-async/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jsonrpc-async/default.nix b/pkgs/development/python-modules/jsonrpc-async/default.nix
index 758fc0f1dd5..5b7ce3c12bf 100644
--- a/pkgs/development/python-modules/jsonrpc-async/default.nix
+++ b/pkgs/development/python-modules/jsonrpc-async/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "jsonrpc-async";
-  version = "1.0.0";
+  version = "1.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6241a221b52e18265fe6bb59c60633acebb6fb5ef8c04de9a076b757aa133b86";
+    sha256 = "adda3ff6e122b1932b6e20cf583666ea65db4248bc19b04811a4ccc0f0b03d95";
   };
 
   propagatedBuildInputs = [ aiohttp jsonrpc-base ];

From af3a68efbc5d188b7687ba79bc000d1d3b660cca Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:16 +0200
Subject: [PATCH 193/294] python: jsonrpc-base: 1.0.1 -> 1.0.2

---
 pkgs/development/python-modules/jsonrpc-base/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jsonrpc-base/default.nix b/pkgs/development/python-modules/jsonrpc-base/default.nix
index d68b031d517..35244e092da 100644
--- a/pkgs/development/python-modules/jsonrpc-base/default.nix
+++ b/pkgs/development/python-modules/jsonrpc-base/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "jsonrpc-base";
-  version = "1.0.1";
+  version = "1.0.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "21f860c915617f6475aa1ac5a1ec11de03cce6b279741f25ad97d8a4c5b76c3c";
+    sha256 = "f9baac32aa51c3052d03b86ff30a9856900b8b4a4eb175f7bf2c8722520b8637";
   };
 
   propagatedBuildInputs = [ ];

From a2eb8a7998ef1bf8626779169cbe8953528c24c7 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:23 +0200
Subject: [PATCH 194/294] python: jsonrpc-websocket: 1.0.0 -> 1.0.1

---
 pkgs/development/python-modules/jsonrpc-websocket/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jsonrpc-websocket/default.nix b/pkgs/development/python-modules/jsonrpc-websocket/default.nix
index c753058b093..eff4f41979a 100644
--- a/pkgs/development/python-modules/jsonrpc-websocket/default.nix
+++ b/pkgs/development/python-modules/jsonrpc-websocket/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "jsonrpc-websocket";
-  version = "1.0.0";
+  version = "1.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "40949836996c0a8104e7878997d3f68bda4561e9d3af64e5cd178127ec3c2778";
+    sha256 = "e74e490fefa3b8f33620fca98f7cd9a53fb765b9ed6f78360482a3f364230885";
   };
 
   propagatedBuildInputs = [ aiohttp jsonrpc-base ];

From 4b858b284741c6ff7fad141c2396347cc674ddaa Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:30 +0200
Subject: [PATCH 195/294] python: jupyterlab: 0.33.10 -> 0.34.2

---
 pkgs/development/python-modules/jupyterlab/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jupyterlab/default.nix b/pkgs/development/python-modules/jupyterlab/default.nix
index 1ac5e85c404..f6cbea2c36e 100644
--- a/pkgs/development/python-modules/jupyterlab/default.nix
+++ b/pkgs/development/python-modules/jupyterlab/default.nix
@@ -1,12 +1,12 @@
 { lib, buildPythonPackage, isPy3k, fetchPypi, ipython_genutils, jupyterlab_launcher, notebook }:
 buildPythonPackage rec {
   pname = "jupyterlab";
-  version = "0.33.10";
+  version = "0.34.2";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2f9147a2085541118923a71700733ecd1067630b4bc7d8be0ae8d0f9d8131bd9";
+    sha256 = "37f66118b35c11fd51f0680e665139d62f86fe54f1e30d2517a1eabb30616ce4";
   };
 
   propagatedBuildInputs = [

From 0c0a7b319c072819168f1e6a08f811809e33d5e7 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:37 +0200
Subject: [PATCH 196/294] python: Keras_Applications: 1.0.4 -> 1.0.5

---
 .../development/python-modules/keras-applications/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/keras-applications/default.nix b/pkgs/development/python-modules/keras-applications/default.nix
index e06a0b75b50..f9617f03d8e 100644
--- a/pkgs/development/python-modules/keras-applications/default.nix
+++ b/pkgs/development/python-modules/keras-applications/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Keras_Applications";
-  version = "1.0.4";
+  version = "1.0.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8c95300328630ae74fb0828b6fa38269a25c0228a02f1e5181753bfd48961f49";
+    sha256 = "26a7318b9d8d5be80d75ab08a1284aaf4b94125dd8271b18ca89791e16eb2cfc";
   };
 
   # Cyclic dependency: keras-applications requires keras, which requires keras-applications

From 6f25b9b49073275a471194ddcc90ff8e8d9b881e Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:44 +0200
Subject: [PATCH 197/294] python: Keras_Preprocessing: 1.0.2 -> 1.0.3

---
 .../python-modules/keras-preprocessing/default.nix            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/keras-preprocessing/default.nix b/pkgs/development/python-modules/keras-preprocessing/default.nix
index 043e43eb184..45ce1d7f61d 100644
--- a/pkgs/development/python-modules/keras-preprocessing/default.nix
+++ b/pkgs/development/python-modules/keras-preprocessing/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Keras_Preprocessing";
-  version = "1.0.2";
+  version = "1.0.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f5306554d2b454d825b36f35e327744f5477bd2ae21017f1a93b2097bed6757e";
+    sha256 = "02ba0a3b31ed89c4b0c21d55ba7d87529097d56f394e3850b6d3c9e6c63ce7ae";
   };
 
   # Cyclic dependency: keras-preprocessing requires keras, which requires keras-preprocessing

From bee808d45d474d38326c8591855e16d0bb213ec7 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:51 +0200
Subject: [PATCH 198/294] python: kubernetes: 6.0.0 -> 7.0.0

---
 pkgs/development/python-modules/kubernetes/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/kubernetes/default.nix b/pkgs/development/python-modules/kubernetes/default.nix
index 9d91fdc9679..030766eb698 100644
--- a/pkgs/development/python-modules/kubernetes/default.nix
+++ b/pkgs/development/python-modules/kubernetes/default.nix
@@ -4,7 +4,7 @@
 
 buildPythonPackage rec {
   pname = "kubernetes";
-  version = "6.0.0";
+  version = "7.0.0";
 
   prePatch = ''
     sed -e 's/sphinx>=1.2.1,!=1.3b1,<1.4 # BSD/sphinx/' -i test-requirements.txt
@@ -23,7 +23,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b370ab4abd925309db69a14a4723487948e9a83de60ca92782ec14992b741c89";
+    sha256 = "84dfb4319afac189e8327b71b9332b5329d2a78074f58958c5f06a870edf32ba";
   };
 
   checkInputs = [ isort coverage pytest mock sphinx autopep8 pep8 codecov recommonmark nose ];

From eacb2ef6916fb0f504d144041cb9163c17dd97cb Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:46:58 +0200
Subject: [PATCH 199/294] python: libusb1: 1.6.5 -> 1.6.6

---
 pkgs/development/python-modules/libusb1/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/libusb1/default.nix b/pkgs/development/python-modules/libusb1/default.nix
index f11930a3a18..245ea90038e 100644
--- a/pkgs/development/python-modules/libusb1/default.nix
+++ b/pkgs/development/python-modules/libusb1/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "libusb1";
-  version = "1.6.5";
+  version = "1.6.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4707f81e933a97fed1c5bf7d4957f07bae1139cb8084bdee1f50201a40e3fd7c";
+    sha256 = "a49917a2262cf7134396f6720c8be011f14aabfc5cdc53f880cc672c0f39d271";
   };
 
   postPatch = lib.optionalString stdenv.isLinux ''

From f2d0ed0b24240f53667233d291921e2dc7581bb9 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:47:04 +0200
Subject: [PATCH 200/294] python: mozdevice: 1.0.0 -> 1.0.1

---
 .../python-modules/marionette-harness/mozdevice.nix           | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/marionette-harness/mozdevice.nix b/pkgs/development/python-modules/marionette-harness/mozdevice.nix
index 491069cd87f..02da75bfd96 100644
--- a/pkgs/development/python-modules/marionette-harness/mozdevice.nix
+++ b/pkgs/development/python-modules/marionette-harness/mozdevice.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "mozdevice";
-  version = "1.0.0";
+  version = "1.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c3c50219127e36c171f84b2427e8fcf3a85457f336559aead9770b2a27fbc4b6";
+    sha256 = "0026241bff3ad10a73fe24eb4f59c1313c94e5950f397b2f6b8cc4e4dfbfdd73";
   };
 
   propagatedBuildInputs = [ moznetwork mozprocess ];

From 916bdbbf814c931148fdde75b59b1c0f92a525f2 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:47:11 +0200
Subject: [PATCH 201/294] python: marshmallow-sqlalchemy: 0.14.0 -> 0.14.1

---
 .../python-modules/marshmallow-sqlalchemy/default.nix         | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/marshmallow-sqlalchemy/default.nix b/pkgs/development/python-modules/marshmallow-sqlalchemy/default.nix
index f7efeb72592..b2b0e7d4efa 100644
--- a/pkgs/development/python-modules/marshmallow-sqlalchemy/default.nix
+++ b/pkgs/development/python-modules/marshmallow-sqlalchemy/default.nix
@@ -4,7 +4,7 @@
 
 buildPythonPackage rec {
   pname = "marshmallow-sqlalchemy";
-  version = "0.14.0";
+  version = "0.14.1";
 
   meta = {
     homepage = "https://github.com/marshmallow-code/marshmallow-sqlalchemy";
@@ -14,7 +14,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "32ff19350a8892b3e8dc954eeeac796576bb89356512f9e1ccd33da63f856930";
+    sha256 = "a42cdbd6b623059fca601e1b572cab28f00d4acf36e2cef38094c88424b3dcf1";
   };
 
   propagatedBuildInputs = [ marshmallow sqlalchemy ];

From f46bfd940b7e573077ad88ced7d583b7a9ecaba3 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:47:18 +0200
Subject: [PATCH 202/294] python: ncclient: 0.6.0 -> 0.6.2

---
 pkgs/development/python-modules/ncclient/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/ncclient/default.nix b/pkgs/development/python-modules/ncclient/default.nix
index d8a6499d136..9dc7710ff28 100644
--- a/pkgs/development/python-modules/ncclient/default.nix
+++ b/pkgs/development/python-modules/ncclient/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "ncclient";
-  version = "0.6.0";
+  version = "0.6.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "da7f7dfb8a60711610139e894b41ebcab3cd7103b78439ad5e9e91c2d3cfa423";
+    sha256 = "6616828f9c5d318906dae22378a78342bbfa5983f1775c1af8bfecc779434c38";
   };
 
   checkInputs = [ nose rednose ];

From 27c844e6c9e89d73dcf9d5585d6ad05d5fd3175a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:47:32 +0200
Subject: [PATCH 203/294] python: numpy: 1.15.0 -> 1.15.1

---
 pkgs/development/python-modules/numpy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix
index 96a3a524298..88fe33a6c35 100644
--- a/pkgs/development/python-modules/numpy/default.nix
+++ b/pkgs/development/python-modules/numpy/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "numpy";
-  version = "1.15.0";
+  version = "1.15.1";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "f28e73cf18d37a413f7d5de35d024e6b98f14566a10d82100f9dc491a7d449f9";
+    sha256 = "7b9e37f194f8bcdca8e9e6af92e2cbad79e360542effc2dd6b98d63955d8d8a3";
   };
 
   disabled = isPyPy;

From b4424658b6171ce8d1d7f71ea74dcfc6cf79d518 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:47:45 +0200
Subject: [PATCH 204/294] python: pathspec: 0.5.6 -> 0.5.7

---
 pkgs/development/python-modules/pathspec/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pathspec/default.nix b/pkgs/development/python-modules/pathspec/default.nix
index 4d812ec3b4f..15ff1b32241 100644
--- a/pkgs/development/python-modules/pathspec/default.nix
+++ b/pkgs/development/python-modules/pathspec/default.nix
@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname   = "pathspec";
-  version = "0.5.6";
+  version = "0.5.7";
   name    = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "be664567cf96a718a68b33329862d1e6f6803ef9c48a6e2636265806cfceb29d";
+    sha256 = "69ac7869c9ce308cfe631e29c09f9da60fae02baf31418885bbbb0c75adcd8c5";
   };
 
   meta = {

From 58996be580bdb424498b1d11a0c8c8e56581b77c Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:47:52 +0200
Subject: [PATCH 205/294] python: persistent: 4.3.0 -> 4.4.1

---
 pkgs/development/python-modules/persistent/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/persistent/default.nix b/pkgs/development/python-modules/persistent/default.nix
index b3c6bd755d8..903be34ed0f 100644
--- a/pkgs/development/python-modules/persistent/default.nix
+++ b/pkgs/development/python-modules/persistent/default.nix
@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "persistent";
-  version = "4.3.0";
+  version = "4.4.1";
 
   propagatedBuildInputs = [ zope_interface ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d8e2253a35f46ae318e65f0e3b51cdce16d4646e284a26f88a2d84b4d2507f81";
+    sha256 = "2aedeaaf09fed52f63324b178d0addfe1c558340d68d04aafe85abafaafd8699";
   };
 
   meta = {

From d4e198ee1a82509300713ab0f977aee326b06ce6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:47:59 +0200
Subject: [PATCH 206/294] python: phonenumbers: 8.9.10 -> 8.9.11

---
 pkgs/development/python-modules/phonenumbers/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/phonenumbers/default.nix b/pkgs/development/python-modules/phonenumbers/default.nix
index 79a5a646ead..42a12f72158 100644
--- a/pkgs/development/python-modules/phonenumbers/default.nix
+++ b/pkgs/development/python-modules/phonenumbers/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "phonenumbers";
-  version = "8.9.10";
+  version = "8.9.11";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cbb8194814cc026f476132c38c507adbd459bc8ee99be39f421650ab1b986ed7";
+    sha256 = "1c31db3859aada0568e7afe7231c4e795f34bfcf5749e31c9d1da3c72ba7059b";
   };
 
   meta = {

From 31ee6d82dcb3625b0e1ccee77d7f9c6444fdcfaa Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:48:06 +0200
Subject: [PATCH 207/294] python: pkgconfig: 1.3.1 -> 1.4.0

---
 pkgs/development/python-modules/pkgconfig/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pkgconfig/default.nix b/pkgs/development/python-modules/pkgconfig/default.nix
index b810213cce9..96c0ea56682 100644
--- a/pkgs/development/python-modules/pkgconfig/default.nix
+++ b/pkgs/development/python-modules/pkgconfig/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pkgconfig";
-  version = "1.3.1";
+  version = "1.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "107x2wmchlch8saixb488cgjz9n6inl38wi7nxkb942rbaapxiqb";
+    sha256 = "048c3b457da7b6f686b647ab10bf09e2250e4c50acfe6f215398a8b5e6fcdb52";
   };
 
   checkInputs = [ nose ];

From ecb7d5c7b33ddd44a641719746e9a902eca183ff Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:48:20 +0200
Subject: [PATCH 208/294] python: psutil: 5.4.6 -> 5.4.7

---
 pkgs/development/python-modules/psutil/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/psutil/default.nix b/pkgs/development/python-modules/psutil/default.nix
index 84fe2f69554..6e048467313 100644
--- a/pkgs/development/python-modules/psutil/default.nix
+++ b/pkgs/development/python-modules/psutil/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "psutil";
-  version = "5.4.6";
+  version = "5.4.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "686e5a35fe4c0acc25f3466c32e716f2d498aaae7b7edc03e2305b682226bcf6";
+    sha256 = "5b6322b167a5ba0c5463b4d30dfd379cd4ce245a1162ebf8fc7ab5c5ffae4f3b";
   };
 
   # No tests in archive

From 45c173e487b1fc849e9dd39343dc83fc732e4961 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:48:27 +0200
Subject: [PATCH 209/294] python: pycryptodome: 3.6.5 -> 3.6.6

---
 pkgs/development/python-modules/pycryptodome/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pycryptodome/default.nix b/pkgs/development/python-modules/pycryptodome/default.nix
index b4f044cf038..5b729182ca8 100644
--- a/pkgs/development/python-modules/pycryptodome/default.nix
+++ b/pkgs/development/python-modules/pycryptodome/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchPypi, buildPythonPackage }:
 
 buildPythonPackage rec {
-  version = "3.6.5";
+  version = "3.6.6";
   pname = "pycryptodome";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "99d653f3a92f35e3c768a142aa83c8c7b104a787655c51e25dca89ed778960b8";
+    sha256 = "b3cb4af317d9b84f6df50f0cfa6840ba69556af637a83fd971537823e13d601a";
   };
 
   meta = {

From 5544e3bfc12726af2624a44c95317a44ac24c365 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:48:34 +0200
Subject: [PATCH 210/294] python: pycryptodomex: 3.6.5 -> 3.6.6

---
 pkgs/development/python-modules/pycryptodomex/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pycryptodomex/default.nix b/pkgs/development/python-modules/pycryptodomex/default.nix
index c9741a46438..f3f439bc4a5 100644
--- a/pkgs/development/python-modules/pycryptodomex/default.nix
+++ b/pkgs/development/python-modules/pycryptodomex/default.nix
@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "pycryptodomex";
-  version = "3.6.5";
+  version = "3.6.6";
 
   meta = {
     description = "A self-contained cryptographic library for Python";
@@ -12,6 +12,6 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ff7d28474ef2134fe3027b53fa3cf13ed5f776ce15d6209b0e48fbc7592f9396";
+    sha256 = "d0d448484e161786922b41e112b5d7cf76ef5f0c725ea5107ef866bb14a38b12";
   };
 }

From 04bf203b9ac9599818b1a7fae0b57964211d0943 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:48:48 +0200
Subject: [PATCH 211/294] python: pyhomematic: 0.1.46 -> 0.1.47

---
 pkgs/development/python-modules/pyhomematic/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyhomematic/default.nix b/pkgs/development/python-modules/pyhomematic/default.nix
index 4ec77ed96c1..cd10edd2b64 100644
--- a/pkgs/development/python-modules/pyhomematic/default.nix
+++ b/pkgs/development/python-modules/pyhomematic/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "pyhomematic";
-  version = "0.1.46";
+  version = "0.1.47";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0a0ba8de05fc6d60bbb0beec7e808fb231abcb566c3bc17de532f72b18fe2837";
+    sha256 = "bdac91dc6810b3d9f53d26daf6e6f26480c556fc3b43890e376aa23c17afd60b";
   };
 
   # PyPI tarball does not include tests/ directory

From 467df25af55c1f1f9425d8b63fbc36860917176e Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:02 +0200
Subject: [PATCH 212/294] python: pyodbc: 4.0.23 -> 4.0.24

---
 pkgs/development/python-modules/pyodbc/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyodbc/default.nix b/pkgs/development/python-modules/pyodbc/default.nix
index ae1133fc0be..b28c1a87647 100644
--- a/pkgs/development/python-modules/pyodbc/default.nix
+++ b/pkgs/development/python-modules/pyodbc/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "pyodbc";
-  version = "4.0.23";
+  version = "4.0.24";
   disabled = isPyPy;  # use pypypdbc instead
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bb33d032c1f25781db64e2e4fecf77047fab2ddde42a6cd9496e3c66fb8e9f66";
+    sha256 = "4326abb737dec36156998d52324921673d30f575e1e0998f0c5edd7de20e61d4";
   };
 
   buildInputs = [ libiodbc ];

From 6a2f30ab54e076be79c40694e017c8156fe456e2 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:09 +0200
Subject: [PATCH 213/294] python: Pyphen: 0.9.4 -> 0.9.5

---
 pkgs/development/python-modules/pyphen/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyphen/default.nix b/pkgs/development/python-modules/pyphen/default.nix
index 4cc7f1493f8..7a182b6be4a 100644
--- a/pkgs/development/python-modules/pyphen/default.nix
+++ b/pkgs/development/python-modules/pyphen/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Pyphen";
-  version = "0.9.4";
+  version = "0.9.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1mqb5jrigxipxzp1d8nbwkq0cfjw77pnn6hc4mp1yd2mn059mymb";
+    sha256 = "3b633a50873156d777e1f1075ba4d8e96a6ad0a3ca42aa3ea9a6259f93f18921";
   };
 
   meta = with stdenv.lib; {

From 617c8ee925704551fcded9d9319b1ebdddb18afb Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:17 +0200
Subject: [PATCH 214/294] python: pytest: 3.7.1 -> 3.7.2

---
 pkgs/development/python-modules/pytest/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest/default.nix b/pkgs/development/python-modules/pytest/default.nix
index 9c158a55b81..3fae0442a66 100644
--- a/pkgs/development/python-modules/pytest/default.nix
+++ b/pkgs/development/python-modules/pytest/default.nix
@@ -3,7 +3,7 @@
 , atomicwrites, mock, writeText, pathlib2
 }:
 buildPythonPackage rec {
-  version = "3.7.1";
+  version = "3.7.2";
   pname = "pytest";
 
   preCheck = ''
@@ -13,7 +13,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "86a8dbf407e437351cef4dba46736e9c5a6e3c3ac71b2e942209748e76ff2086";
+    sha256 = "3459a123ad5532852d36f6f4501dfe1acf4af1dd9541834a164666aa40395b02";
   };
 
   checkInputs = [ hypothesis mock ];

From 2f9a3664a4ed5aaf9e5fd0db6b441c9ec9456a29 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:23 +0200
Subject: [PATCH 215/294] python: pytest-xdist: 1.22.5 -> 1.23.0

---
 pkgs/development/python-modules/pytest-xdist/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest-xdist/default.nix b/pkgs/development/python-modules/pytest-xdist/default.nix
index 34c94d6aacd..46d505b3801 100644
--- a/pkgs/development/python-modules/pytest-xdist/default.nix
+++ b/pkgs/development/python-modules/pytest-xdist/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pytest-xdist";
-  version = "1.22.5";
+  version = "1.23.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3308c4f6221670432d01e0b393b333d77c1fd805532e1d64450e8140855eb51b";
+    sha256 = "28e25e79698b2662b648319d3971c0f9ae0e6500f88258ccb9b153c31110ba9b";
   };
 
   nativeBuildInputs = [ setuptools_scm ];

From 319d15e044034b5a536dd7fbd3a23c5872c941c8 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:30 +0200
Subject: [PATCH 216/294] python: python-daemon: 2.1.2 -> 2.2.0

---
 pkgs/development/python-modules/python-daemon/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/python-daemon/default.nix b/pkgs/development/python-modules/python-daemon/default.nix
index c44af185a10..76544adaf0b 100644
--- a/pkgs/development/python-modules/python-daemon/default.nix
+++ b/pkgs/development/python-modules/python-daemon/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "python-daemon";
-  version = "2.1.2";
+  version = "2.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "261c859be5c12ae7d4286dc6951e87e9e1a70a882a8b41fd926efc1ec4214f73";
+    sha256 = "aca149ebf7e73f10cd554b2df5c95295d49add8666348eff6195053ec307728c";
   };
 
   # A test fail within chroot builds.

From db3c5b485ad07a0269c597383b893284b6f06214 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:37 +0200
Subject: [PATCH 217/294] python: python-docx: 0.8.6 -> 0.8.7

---
 pkgs/development/python-modules/python-docx/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/python-docx/default.nix b/pkgs/development/python-modules/python-docx/default.nix
index 11ade481df5..1a85c5256d7 100644
--- a/pkgs/development/python-modules/python-docx/default.nix
+++ b/pkgs/development/python-modules/python-docx/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "python-docx";
-  version = "0.8.6";
+  version = "0.8.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "117i84s6fcdsrfckbvznnqgqwhnf1x0523ps16cki8sg9byydv2m";
+    sha256 = "ba9f2a7ca391b78ab385d796b38af3f21bab23c727fc8e0c5e630448d1a11fe3";
   };
 
   checkInputs = [ behave mock pyparsing pytest ];

From 8ae4298972997cc4d2dff5ba5ca88ad06a134540 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:45 +0200
Subject: [PATCH 218/294] python: qtconsole: 4.3.1 -> 4.4.1

---
 pkgs/development/python-modules/qtconsole/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/qtconsole/default.nix b/pkgs/development/python-modules/qtconsole/default.nix
index 5b35acc0404..67b9a07a36d 100644
--- a/pkgs/development/python-modules/qtconsole/default.nix
+++ b/pkgs/development/python-modules/qtconsole/default.nix
@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "qtconsole";
-  version = "4.3.1";
+  version = "4.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "eff8c2faeda567a0bef5781f419a64e9977988db101652b312b9d74ec0a5109c";
+    sha256 = "7870b19e6a6b0ab3acc09ee65463c0ca7568b3a01a6902d7c4e1ed2c4fc4e176";
   };
 
   buildInputs = [ nose ] ++ lib.optionals isPy27 [mock];

From b834f91ce50fb6b3172c5a719368fa1311a5a4fd Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:52 +0200
Subject: [PATCH 219/294] python: regex: 2018.07.11 -> 2018.08.17

---
 pkgs/development/python-modules/regex/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/regex/default.nix b/pkgs/development/python-modules/regex/default.nix
index f3e6d1f5e0a..2394858e13e 100644
--- a/pkgs/development/python-modules/regex/default.nix
+++ b/pkgs/development/python-modules/regex/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "regex";
-  version = "2018.07.11";
+  version = "2018.08.17";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9308dbce8e5ff4ee06b172a777f6c7f650a5835a5ad41a6080eb501639c27a2f";
+    sha256 = "56494baf1ed525deea426d3676b1ae3fdcc906b55eccfcb4ea928453e11f2a43";
   };
 
   postCheck = ''

From 9fd849c3b9ecb3e8116dd296f4a9af5e064e65e4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:49:59 +0200
Subject: [PATCH 220/294] python: reikna: 0.7.0 -> 0.7.1

---
 pkgs/development/python-modules/reikna/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/reikna/default.nix b/pkgs/development/python-modules/reikna/default.nix
index 14e8f9f74ce..760ca0056ff 100644
--- a/pkgs/development/python-modules/reikna/default.nix
+++ b/pkgs/development/python-modules/reikna/default.nix
@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "reikna";
-  version = "0.7.0";
+  version = "0.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e27af9a202b8cdedd07793abbd3282806ec724aba091a27c76d7ba8284cfd8ba";
+    sha256 = "0afc5d502cc9ba0dadd88c15d72e2fdaa09fee31faaae5064889732de7940953";
   };
 
   checkInputs = [ sphinx pytestcov pytest ];

From 5c0ebe6446a17e037dba7ec29c8c8ba8051ce6c0 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:50:06 +0200
Subject: [PATCH 221/294] python: reportlab: 3.5.2 -> 3.5.6

---
 pkgs/development/python-modules/reportlab/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/reportlab/default.nix b/pkgs/development/python-modules/reportlab/default.nix
index 298c3c79e38..e2f2a7814aa 100644
--- a/pkgs/development/python-modules/reportlab/default.nix
+++ b/pkgs/development/python-modules/reportlab/default.nix
@@ -11,11 +11,11 @@ let
   ft = freetype.overrideAttrs (oldArgs: { dontDisableStatic = true; });
 in buildPythonPackage rec {
   pname = "reportlab";
-  version = "3.5.2";
+  version = "3.5.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "08986267eaf25d62c3802512f0a97dc3426d0c82f52c8beb576689582eb85b7f";
+    sha256 = "3836a49e7ea7bce458f437cbc094633c7fd4ac027180565875c18ecc726f261e";
   };
 
   checkInputs = [ glibcLocales ];

From c65f6a473eeb48769b1f918bc6f70bb51de4a3bf Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:50:13 +0200
Subject: [PATCH 222/294] python: s3fs: 0.1.5 -> 0.1.6

---
 pkgs/development/python-modules/s3fs/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/s3fs/default.nix b/pkgs/development/python-modules/s3fs/default.nix
index 0053b125bcb..7a9454734d9 100644
--- a/pkgs/development/python-modules/s3fs/default.nix
+++ b/pkgs/development/python-modules/s3fs/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "s3fs";
-  version = "0.1.5";
+  version = "0.1.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4fbab74d72ceeb1a6f249165bde7b1d1c4dd758390339f52c84f0832bc5117a7";
+    sha256 = "38a3dda6800a5dc6ed697bff8e9a47d84f5c28d186dc25d2ff2f91b445f0dae5";
   };
 
   buildInputs = [ docutils ];

From d9cb046ac85c8090757af80f5e9e0331957fa6b5 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:50:20 +0200
Subject: [PATCH 223/294] python: setuptools: 40.0.0 -> 40.2.0

---
 pkgs/development/python-modules/setuptools/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/setuptools/default.nix b/pkgs/development/python-modules/setuptools/default.nix
index b10cdfae5c7..b61af72909f 100644
--- a/pkgs/development/python-modules/setuptools/default.nix
+++ b/pkgs/development/python-modules/setuptools/default.nix
@@ -8,13 +8,13 @@
 # Should use buildPythonPackage here somehow
 stdenv.mkDerivation rec {
   pname = "setuptools";
-  version = "40.0.0";
+  version = "40.2.0";
   name = "${python.libPrefix}-${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "012adb8e25fbfd64c652e99e7bab58799a3aaf05d39ab38561f69190a909015f";
+    sha256 = "47881d54ede4da9c15273bac65f9340f8929d4f0213193fa7894be384f2dcfa6";
   };
 
   nativeBuildInputs = [ unzip wrapPython ];

From 594d2c7ee9d8732b1354e6aa4b3e5ef669777e98 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:50:27 +0200
Subject: [PATCH 224/294] python: soco: 0.15 -> 0.16

---
 pkgs/development/python-modules/soco/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/soco/default.nix b/pkgs/development/python-modules/soco/default.nix
index 152a61bbf1d..d039756eb81 100644
--- a/pkgs/development/python-modules/soco/default.nix
+++ b/pkgs/development/python-modules/soco/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "soco";
-  version = "0.15";
+  version = "0.16";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "18bxpbd7l9gns0jpvx09z023kbbz7b6i4f99i8silsb1jv682kg0";
+    sha256 = "7bed4475e3f134283af1f520a9b2e6ce2a8e69bdc1b58ee68528b3d093972424";
   };
 
   propagatedBuildInputs = [ xmltodict requests ];

From c0b4ff39029d60750a4b1dfa762e3ff7ace9b61d Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:50:34 +0200
Subject: [PATCH 225/294] python: Sphinx: 1.7.6 -> 1.7.7

---
 pkgs/development/python-modules/sphinx/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/sphinx/default.nix b/pkgs/development/python-modules/sphinx/default.nix
index 97f76be15cb..525ff4122d8 100644
--- a/pkgs/development/python-modules/sphinx/default.nix
+++ b/pkgs/development/python-modules/sphinx/default.nix
@@ -26,10 +26,10 @@
 
 buildPythonPackage rec {
   pname = "Sphinx";
-  version = "1.7.6";
+  version = "1.7.7";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "217ad9ece2156ed9f8af12b5d2c82a499ddf2c70a33c5f81864a08d8c67b9efc";
+    sha256 = "71531900af3f68625a29c4e00381bee8f85255219a3d500a3e255076a45b735e";
   };
   LC_ALL = "en_US.UTF-8";
 

From e5e1408c78355163dda6e8c7485b6a73e3695ee3 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:50:41 +0200
Subject: [PATCH 226/294] python: SQLAlchemy: 1.2.10 -> 1.2.11

---
 pkgs/development/python-modules/sqlalchemy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/sqlalchemy/default.nix b/pkgs/development/python-modules/sqlalchemy/default.nix
index 8c3c6fe2374..2f755869d79 100644
--- a/pkgs/development/python-modules/sqlalchemy/default.nix
+++ b/pkgs/development/python-modules/sqlalchemy/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "SQLAlchemy";
-  version = "1.2.10";
+  version = "1.2.11";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "72325e67fb85f6e9ad304c603d83626d1df684fdf0c7ab1f0352e71feeab69d8";
+    sha256 = "ef6569ad403520ee13e180e1bfd6ed71a0254192a934ec1dbd3dbf48f4aa9524";
   };
 
   checkInputs = [

From b99101d9ccc012a6cadacb3b285b7766bf457618 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:50:48 +0200
Subject: [PATCH 227/294] python: stripe: 2.4.0 -> 2.6.0

---
 pkgs/development/python-modules/stripe/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/stripe/default.nix b/pkgs/development/python-modules/stripe/default.nix
index 6c3e340c461..c1ebdec90cc 100644
--- a/pkgs/development/python-modules/stripe/default.nix
+++ b/pkgs/development/python-modules/stripe/default.nix
@@ -3,7 +3,7 @@
 
 buildPythonPackage rec {
   pname = "stripe";
-  version = "2.4.0";
+  version = "2.6.0";
 
   # Tests require network connectivity and there's no easy way to disable
   # them. ~ C.
@@ -11,7 +11,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "02c63cec551bba9b4785d156b518699e8ff0e6e6f96d00a72daa075683487202";
+    sha256 = "ce8fc8af33e12d3d92b083b86952227e9af6854eaf6a044a7725ac543b0582f8";
   };
 
   checkInputs = [ unittest2 mock ];

From 587f70cbfe04cf1a4c50086ef108da5bc9a0d6e9 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:50:55 +0200
Subject: [PATCH 228/294] python: svg.path: 2.2 -> 3.0

---
 pkgs/development/python-modules/svg-path/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/svg-path/default.nix b/pkgs/development/python-modules/svg-path/default.nix
index 04031fcbc10..3a11bf67e13 100644
--- a/pkgs/development/python-modules/svg-path/default.nix
+++ b/pkgs/development/python-modules/svg-path/default.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPythonPackage, fetchPypi }:
 buildPythonPackage rec {
   pname = "svg.path";
-  version = "2.2";
+  version = "3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "08kp03i4yiqdkz7a7l7d7kzszahmhigrml2502zi1ybndrh7ayxw";
+    sha256 = "7b568f90f67fd25413c8da9f8bc9f9f8ab089425c20fa03330e97e77d13880ee";
   };
 
   meta = with stdenv.lib; {

From e671f6bb6193dfbef2287e9ce1dc7d6dc98094b8 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:51:02 +0200
Subject: [PATCH 229/294] python: tqdm: 4.24.0 -> 4.25.0

---
 pkgs/development/python-modules/tqdm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/tqdm/default.nix b/pkgs/development/python-modules/tqdm/default.nix
index 23a7a9dac6e..5b65e156a42 100644
--- a/pkgs/development/python-modules/tqdm/default.nix
+++ b/pkgs/development/python-modules/tqdm/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "tqdm";
-  version = "4.24.0";
+  version = "4.25.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "60bbaa6700e87a250f6abcbbd7ddb33243ad592240ba46afce5305b15b406fad";
+    sha256 = "a3364bd83ce4777320b862e3c8a93d7da91e20a95f06ef79bed7dd71c654cafa";
   };
 
   buildInputs = [ nose coverage glibcLocales flake8 ];

From de92954d5da64c0df5dd911e9a11656f6852bbd3 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:51:09 +0200
Subject: [PATCH 230/294] python: trio: 0.5.0 -> 0.6.0

---
 pkgs/development/python-modules/trio/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/trio/default.nix b/pkgs/development/python-modules/trio/default.nix
index c630668386e..4924fa527c6 100644
--- a/pkgs/development/python-modules/trio/default.nix
+++ b/pkgs/development/python-modules/trio/default.nix
@@ -12,12 +12,12 @@
 
 buildPythonPackage rec {
   pname = "trio";
-  version = "0.5.0";
+  version = "0.6.0";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ce0b4f59e2f41af0433247f92ce83116bf356a3c2ab5ca5942cf359a1105b4a8";
+    sha256 = "7a80c10b89068950aa649edd4b09a6f56236642c2c2e648b956289d2301fdb9e";
   };
 
   checkInputs = [ pytest pyopenssl trustme ];

From 793c455b98182f3cbd28020c4d2fbef9614765fa Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:51:23 +0200
Subject: [PATCH 231/294] python: typeguard: 2.2.1 -> 2.2.2

---
 pkgs/development/python-modules/typeguard/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/typeguard/default.nix b/pkgs/development/python-modules/typeguard/default.nix
index de7a110a8f4..6ccde34f48a 100644
--- a/pkgs/development/python-modules/typeguard/default.nix
+++ b/pkgs/development/python-modules/typeguard/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "typeguard";
-  version = "2.2.1";
+  version = "2.2.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "89159e9ab54a436db4759c32eeb0ae6e9b65cf7fe5b838daad4a658024ec3b43";
+    sha256 = "b8ddc6e2e60bd64b7003f9a685a09ba387b74adf2f6bea7534a76d61892f573e";
   };
 
   buildInputs = [ setuptools_scm ];

From 7f22dae41c22c8f3453acf656744154695cc741c Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:51:30 +0200
Subject: [PATCH 232/294] python: vega: 1.3.0 -> 1.4.0

---
 pkgs/development/python-modules/vega/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/vega/default.nix b/pkgs/development/python-modules/vega/default.nix
index 1813ae587c1..09106e3a6d4 100644
--- a/pkgs/development/python-modules/vega/default.nix
+++ b/pkgs/development/python-modules/vega/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "vega";
-  version = "1.3.0";
+  version = "1.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2c5561238fbd4a0669aea457decb47c5155e9741b47a41f23cc030387f725edc";
+    sha256 = "cf9701dac0111c09ea009ab06cbb81f27b1d9c23ebf58ebdf08b6994a37f13ac";
   };
 
   buildInputs = [ pytest ];

From 0ae1f52282dc61975aebd47434477adcc1a552ff Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:51:37 +0200
Subject: [PATCH 233/294] python: websocket_client: 0.48.0 -> 0.51.0

---
 pkgs/development/python-modules/websockets_client/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/websockets_client/default.nix b/pkgs/development/python-modules/websockets_client/default.nix
index 846e9a2a0f5..194f3f126a3 100644
--- a/pkgs/development/python-modules/websockets_client/default.nix
+++ b/pkgs/development/python-modules/websockets_client/default.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPythonPackage, fetchPypi, six }:
 buildPythonPackage rec {
   pname = "websocket_client";
-  version = "0.48.0";
+  version = "0.51.0";
 
   src = fetchPypi {
     inherit version pname;
-    sha256 = "18f1170e6a1b5463986739d9fd45c4308b0d025c1b2f9b88788d8f69e8a5eb4a";
+    sha256 = "030bbfbf29ac9e315ffb207ed5ed42b6981b5038ea00d1e13b02b872cc95e8f6";
   };
 
   prePatch = ''

From 167c0d347bb8512e63374611af3e3c9848fee6ca Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:51:44 +0200
Subject: [PATCH 234/294] python: XlsxWriter: 1.0.5 -> 1.0.7

---
 pkgs/development/python-modules/XlsxWriter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/XlsxWriter/default.nix b/pkgs/development/python-modules/XlsxWriter/default.nix
index be5ad2a5c1c..a72fabb35cd 100644
--- a/pkgs/development/python-modules/XlsxWriter/default.nix
+++ b/pkgs/development/python-modules/XlsxWriter/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "XlsxWriter";
-  version = "1.0.5";
+  version = "1.0.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bd4661c04a68621cb2ebc07c38b8b2e98e30bf213a16e1cf3675b61e26ca9bf2";
+    sha256 = "1224b971c174f33b954f9a1906679d0049399bd6a5a8c78bbae2d6c2c4facebd";
   };
 
   meta = {

From c8d0c5fdec7c65ffc4e143e9e754a244a1bada55 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:52:04 +0200
Subject: [PATCH 235/294] pythonPackages.pytest-asyncio: fix build

---
 pkgs/development/python-modules/pytest-asyncio/default.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/development/python-modules/pytest-asyncio/default.nix b/pkgs/development/python-modules/pytest-asyncio/default.nix
index 6d90521900f..6b4ce6f6123 100644
--- a/pkgs/development/python-modules/pytest-asyncio/default.nix
+++ b/pkgs/development/python-modules/pytest-asyncio/default.nix
@@ -15,6 +15,11 @@ buildPythonPackage rec {
   # No tests in archive
   doCheck = false;
 
+  # LICENSE file is not distributed. https://github.com/pytest-dev/pytest-asyncio/issues/92
+  postPatch = ''
+    substituteInPlace setup.cfg --replace "license_file = LICENSE" ""
+  '';
+
   meta = with stdenv.lib; {
     description = "library for testing asyncio code with pytest";
     license = licenses.asl20;

From f68a5ec9b52b930327e93137127905dffe99811f Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 07:56:07 +0200
Subject: [PATCH 236/294] pythonPackages.bootstrapped-pip: setuptools: 40.0.0
 -> 40.2.0

---
 pkgs/development/python-modules/bootstrapped-pip/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/bootstrapped-pip/default.nix b/pkgs/development/python-modules/bootstrapped-pip/default.nix
index b320db51e3c..613be1f7d6b 100644
--- a/pkgs/development/python-modules/bootstrapped-pip/default.nix
+++ b/pkgs/development/python-modules/bootstrapped-pip/default.nix
@@ -9,9 +9,9 @@ let
   };
   setuptools_source = fetchPypi {
     pname = "setuptools";
-    version = "40.0.0";
+    version = "40.2.0";
     format = "wheel";
-    sha256 = "d68abee4eed409fbe8c302ac4d8429a1ffef912cd047a903b5701c024048dd49";
+    sha256 = "ea3796a48a207b46ea36a9d26de4d0cc87c953a683a7b314ea65d666930ea8e6";
   };
 
 in stdenv.mkDerivation rec {

From 5c3e607fb2c083190462fac6b0270e619788d4c3 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 08:01:19 +0200
Subject: [PATCH 237/294] mypy: use toPythonApplication

Top-level Python packages are applications, not libraries.
---
 pkgs/top-level/all-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4cfca87f304..b174af66dce 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8786,7 +8786,7 @@ with pkgs;
 
   grabserial = callPackage ../development/tools/grabserial { };
 
-  mypy = python3Packages.mypy;
+  mypy = with python3Packages; toPythonApplication mypy;
 
   ### DEVELOPMENT / LIBRARIES
 

From 6923bc8d23e2735708492da627a378de5a53c218 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 18:16:34 +0200
Subject: [PATCH 238/294] awscli: 1.15.66 -> 1.16.1

---
 pkgs/tools/admin/awscli/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/admin/awscli/default.nix b/pkgs/tools/admin/awscli/default.nix
index c454cca0ed6..92e5459df49 100644
--- a/pkgs/tools/admin/awscli/default.nix
+++ b/pkgs/tools/admin/awscli/default.nix
@@ -19,11 +19,11 @@ let
 
 in py.pkgs.buildPythonApplication rec {
   pname = "awscli";
-  version = "1.15.66";
+  version = "1.16.1";
 
   src = py.pkgs.fetchPypi {
     inherit pname version;
-    sha256 = "004fbd3bb8932465205675a7de94460b5c2d45ddd6916138a2c867e4d0f2a4c4";
+    sha256 = "5068efde694e24462646d271335fdef3dde8a0fbbfb986fab0ce7e5368a7df8d";
   };
 
   # No tests included

From ff3665f584e7ef1ee9bf32e5e21b51f4c3f535ee Mon Sep 17 00:00:00 2001
From: Gabriel Ebner <gebner@gebner.org>
Date: Sat, 25 Aug 2018 18:34:41 +0200
Subject: [PATCH 239/294] mesa: enable texture floats

---
 pkgs/development/libraries/mesa/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix
index e1a9477dcd6..f05824f19bb 100644
--- a/pkgs/development/libraries/mesa/default.nix
+++ b/pkgs/development/libraries/mesa/default.nix
@@ -100,6 +100,7 @@ let self = stdenv.mkDerivation {
     "--with-dri-driverdir=$(drivers)/lib/dri"
     "--with-dri-searchpath=${libglvnd.driverLink}/lib/dri"
     "--with-platforms=x11,wayland,drm"
+    "--enable-texture-float"
   ]
   ++ (optional (galliumDrivers != [])
       ("--with-gallium-drivers=" +

From 99696fb9a0b497506cfbabec0049988ad12216f4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 25 Aug 2018 18:41:12 +0200
Subject: [PATCH 240/294] python: numexpr: 2.6.7 -> 2.6.8

---
 pkgs/development/python-modules/numexpr/default.nix | 13 ++++---------
 1 file changed, 4 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/python-modules/numexpr/default.nix b/pkgs/development/python-modules/numexpr/default.nix
index 0d9e0d2a6d0..6e237b2bd9e 100644
--- a/pkgs/development/python-modules/numexpr/default.nix
+++ b/pkgs/development/python-modules/numexpr/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "numexpr";
-  version = "2.6.7";
+  version = "2.6.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3d007946b6c042fc9feb1db52dd0847d2f9b7f3175ae0591476ea80dcd664771";
+    sha256 = "ee8bc7201aa2f1962c67d27c326a11eef9df887d7b87b1278a1d4e722bf44375";
   };
 
   propagatedBuildInputs = [ numpy ];
@@ -19,20 +19,15 @@ buildPythonPackage rec {
   # Run the test suite.
   # It requires the build path to be in the python search path.
   checkPhase = ''
+    pushd $out
     ${python}/bin/${python.executable} <<EOF
-    import sysconfig
     import sys
-    import os
-    f = "lib.{platform}-{version[0]}.{version[1]}"
-    lib = f.format(platform=sysconfig.get_platform(),
-                   version=sys.version_info)
-    build = os.path.join(os.getcwd(), 'build', lib)
-    sys.path.insert(0, build)
     import numexpr
     r = numexpr.test()
     if not r.wasSuccessful():
         sys.exit(1)
     EOF
+    popd
   '';
 
   meta = {

From e2414dcbaac057509d7a29feefceb3bc0bd678c4 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Thu, 9 Aug 2018 23:27:15 +0200
Subject: [PATCH 241/294] pan: clean up

---
 pkgs/applications/networking/newsreaders/pan/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/networking/newsreaders/pan/default.nix b/pkgs/applications/networking/newsreaders/pan/default.nix
index 4a1940ae654..9d51a76f536 100644
--- a/pkgs/applications/networking/newsreaders/pan/default.nix
+++ b/pkgs/applications/networking/newsreaders/pan/default.nix
@@ -2,7 +2,7 @@
 , stdenv, fetchurl, pkgconfig, gtk3, gtkspell3 ? null
 , perl, gmime2, gettext, intltool, itstool, libxml2, dbus-glib, libnotify, gnutls
 , makeWrapper, gnupg
-, gnomeSupport ? true, libgnome-keyring3
+, gnomeSupport ? true, gnome3, libsecret
 }:
 
 assert spellChecking -> gtkspell3 != null;
@@ -17,10 +17,10 @@ stdenv.mkDerivation {
     sha256 = "1b4wamv33hprghcjk903bpvnd233yxyrm18qnh13alc8h1553nk8";
   };
 
-  nativeBuildInputs = [ pkgconfig makeWrapper ];
-  buildInputs = [ gtk3 perl gmime2 gettext intltool itstool libxml2 dbus-glib libnotify gnutls ]
+  nativeBuildInputs = [ pkgconfig gettext intltool itstool libxml2 makeWrapper ];
+  buildInputs = [ gtk3 gmime2 libnotify gnutls ]
     ++ stdenv.lib.optional spellChecking gtkspell3
-    ++ stdenv.lib.optional gnomeSupport libgnome-keyring3;
+    ++ stdenv.lib.optionals gnomeSupport [ libsecret gnome3.gcr ];
 
   configureFlags = [
     "--with-dbus"

From 1bd430e3d444aa566d55a668f424033e2dcc782f Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Fri, 10 Aug 2018 01:04:52 +0200
Subject: [PATCH 242/294] gnome3.gnome-keyring: clean up

---
 .../gnome-3/core/gnome-keyring/default.nix    | 27 ++++++++++---------
 1 file changed, 14 insertions(+), 13 deletions(-)

diff --git a/pkgs/desktops/gnome-3/core/gnome-keyring/default.nix b/pkgs/desktops/gnome-3/core/gnome-keyring/default.nix
index acb32bc174c..cce192c9f29 100644
--- a/pkgs/desktops/gnome-3/core/gnome-keyring/default.nix
+++ b/pkgs/desktops/gnome-3/core/gnome-keyring/default.nix
@@ -1,6 +1,6 @@
-{ stdenv, fetchurl, pkgconfig, dbus, libgcrypt, libtasn1, pam, python2, glib, libxslt
-, intltool, pango, gcr, gdk_pixbuf, atk, p11-kit, openssh, wrapGAppsHook
-, docbook_xsl, docbook_xml_dtd_42, gnome3 }:
+{ stdenv, fetchurl, pkgconfig, dbus, libgcrypt, pam, python2, glib, libxslt
+, gettext, gcr, libcap_ng, libselinux, p11-kit, openssh, wrapGAppsHook
+, docbook_xsl, docbook_xml_dtd_43, gnome3 }:
 
 stdenv.mkDerivation rec {
   name = "gnome-keyring-${version}";
@@ -11,21 +11,15 @@ stdenv.mkDerivation rec {
     sha256 = "0sk4las4ji8wv9nx8mldzqccmpmkvvr9pdwv9imj26r10xyin5w1";
   };
 
-  passthru = {
-    updateScript = gnome3.updateScript { packageName = "gnome-keyring"; attrPath = "gnome3.gnome-keyring"; };
-  };
-
   outputs = [ "out" "dev" ];
 
-  buildInputs = with gnome3; [
-    dbus libgcrypt pam gtk3 libgnome-keyring openssh
-    pango gcr gdk_pixbuf atk p11-kit
+  buildInputs = [
+    glib libgcrypt pam openssh libcap_ng libselinux
+    gcr p11-kit
   ];
 
-  propagatedBuildInputs = [ glib libtasn1 libxslt ];
-
   nativeBuildInputs = [
-    pkgconfig intltool docbook_xsl docbook_xml_dtd_42 wrapGAppsHook
+    pkgconfig gettext libxslt docbook_xsl docbook_xml_dtd_43 wrapGAppsHook
   ];
 
   configureFlags = [
@@ -48,6 +42,13 @@ stdenv.mkDerivation rec {
       make check
   '';
 
+  passthru = {
+    updateScript = gnome3.updateScript {
+      packageName = "gnome-keyring";
+      attrPath = "gnome3.gnome-keyring";
+    };
+  };
+
   meta = with stdenv.lib; {
     description = "Collection of components in GNOME that store secrets, passwords, keys, certificates and make them available to applications";
     homepage = https://wiki.gnome.org/Projects/GnomeKeyring;

From 64ddf1de6d029183beda7a7e7409ded4676a5725 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 11 Aug 2018 14:09:29 +0200
Subject: [PATCH 243/294] xfce.xfce4-settings: remove unneeded dependency

https://bluesabre.org/2018/06/20/xfce-settings-4-12-4-and-4-13-4-released/
---
 pkgs/desktops/xfce4-13/xfce4-settings/default.nix | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/pkgs/desktops/xfce4-13/xfce4-settings/default.nix b/pkgs/desktops/xfce4-13/xfce4-settings/default.nix
index d08c1f96fdd..6eb917fd76f 100644
--- a/pkgs/desktops/xfce4-13/xfce4-settings/default.nix
+++ b/pkgs/desktops/xfce4-13/xfce4-settings/default.nix
@@ -1,4 +1,4 @@
-{ mkXfceDerivation, automakeAddFlags, dbus-glib, exo, garcon, gtk3
+{ mkXfceDerivation, automakeAddFlags, exo, garcon, gtk3
 , libnotify ? null, libxfce4ui, libxfce4util, libxklavier ? null
 , upower ? null, xfconf, xf86inputlibinput ? null }:
 
@@ -19,7 +19,6 @@ mkXfceDerivation rec {
   nativeBuildInputs = [ automakeAddFlags ];
 
   buildInputs = [
-    dbus-glib
     exo
     garcon
     gtk3

From b47e4e76445e22b6d0d575242ab09c243b2de012 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 12 Aug 2018 01:42:24 +0200
Subject: [PATCH 244/294] modemmanager: remove unneeded dependency

---
 pkgs/tools/networking/modem-manager/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/modem-manager/default.nix b/pkgs/tools/networking/modem-manager/default.nix
index 8612808687e..6ca8c892562 100644
--- a/pkgs/tools/networking/modem-manager/default.nix
+++ b/pkgs/tools/networking/modem-manager/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, udev, libgudev, polkit, dbus-glib, ppp, gettext, pkgconfig
+{ stdenv, fetchurl, glib, udev, libgudev, polkit, ppp, gettext, pkgconfig
 , libmbim, libqmi, systemd, fetchpatch }:
 
 stdenv.mkDerivation rec {
@@ -13,7 +13,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ gettext pkgconfig ];
 
-  buildInputs = [ udev libgudev polkit dbus-glib ppp libmbim libqmi systemd ];
+  buildInputs = [ glib udev libgudev polkit ppp libmbim libqmi systemd ];
 
   patches = [
     # Patch dependency on glib headers, this breaks packages using core headers (networkmanager-qt)

From 6e2c1152350a1080e84da36941651e59c64f568d Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 12 Aug 2018 14:28:18 +0200
Subject: [PATCH 245/294] gnome3.gnome-desktop: use substituteAll for patch

---
 pkgs/desktops/gnome-3/core/gnome-desktop/default.nix | 12 +++++-------
 1 file changed, 5 insertions(+), 7 deletions(-)

diff --git a/pkgs/desktops/gnome-3/core/gnome-desktop/default.nix b/pkgs/desktops/gnome-3/core/gnome-desktop/default.nix
index e909a356866..d6402a3b5b6 100644
--- a/pkgs/desktops/gnome-3/core/gnome-desktop/default.nix
+++ b/pkgs/desktops/gnome-3/core/gnome-desktop/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, pkgconfig, libxslt, which, libX11, gnome3, gtk3, glib
+{ stdenv, fetchurl, substituteAll, pkgconfig, libxslt, which, libX11, gnome3, gtk3, glib
 , intltool, libxml2, xkeyboard_config, isocodes, itstool, wayland
 , libseccomp, bubblewrap, gobjectIntrospection, gtk-doc, docbook_xsl }:
 
@@ -30,18 +30,16 @@ stdenv.mkDerivation rec {
   propagatedBuildInputs = [ gnome3.gsettings-desktop-schemas ];
 
   patches = [
-    ./bubblewrap-paths.patch
+    (substituteAll {
+      src = ./bubblewrap-paths.patch;
+      BUBBLEWRAP_BIN = "${bubblewrap}/bin/bwrap";
+    })
   ];
 
   configureFlags = [
     "--enable-gtk-doc"
   ];
 
-  postPatch = ''
-    substituteInPlace libgnome-desktop/gnome-desktop-thumbnail-script.c --subst-var-by \
-      BUBBLEWRAP_BIN "${bubblewrap}/bin/bwrap"
-  '';
-
   passthru = {
     updateScript = gnome3.updateScript {
       packageName = "gnome-desktop";

From 2258383b827ca50308838cab3c11869982764bc0 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 12 Aug 2018 14:08:00 +0200
Subject: [PATCH 246/294] umockdev: split package

---
 pkgs/development/libraries/umockdev/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/umockdev/default.nix b/pkgs/development/libraries/umockdev/default.nix
index 1ff71fa1811..b89450b810b 100644
--- a/pkgs/development/libraries/umockdev/default.nix
+++ b/pkgs/development/libraries/umockdev/default.nix
@@ -1,10 +1,12 @@
-{ stdenv, fetchFromGitHub, autoreconfHook, libtool
+{ stdenv, fetchFromGitHub, autoreconfHook, umockdev, gobjectIntrospection
 , pkgconfig, glib, systemd, libgudev, vala }:
 
 stdenv.mkDerivation rec {
   name = "umockdev-${version}";
   version = "0.11.3";
 
+  outputs = [ "bin" "out" "dev" "doc" ];
+
   src = fetchFromGitHub {
     owner  = "martinpitt";
     repo   = "umockdev";
@@ -19,7 +21,7 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ glib systemd libgudev ];
 
-  nativeBuildInputs = [ autoreconfHook libtool pkgconfig vala ];
+  nativeBuildInputs = [ autoreconfHook pkgconfig vala gobjectIntrospection ];
 
   enableParallelBuilding = true;
 

From f02bfc74c94e3bbd604ed5e92e991f001a985ef9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Sun, 26 Aug 2018 10:49:12 +0200
Subject: [PATCH 247/294] mesa: 18.1.5 -> 18.1.7 (maintenance)

---
 pkgs/development/libraries/mesa/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix
index f05824f19bb..50fb2daad70 100644
--- a/pkgs/development/libraries/mesa/default.nix
+++ b/pkgs/development/libraries/mesa/default.nix
@@ -63,7 +63,7 @@ let
 in
 
 let
-  version = "18.1.5";
+  version = "18.1.7";
   branch  = head (splitString "." version);
 in
 
@@ -77,7 +77,7 @@ let self = stdenv.mkDerivation {
       "ftp://ftp.freedesktop.org/pub/mesa/older-versions/${branch}.x/${version}/mesa-${version}.tar.xz"
       "https://mesa.freedesktop.org/archive/mesa-${version}.tar.xz"
     ];
-    sha256 = "69dbe6f1a6660386f5beb85d4fcf003ee23023ed7b9a603de84e9a37e8d98dea";
+    sha256 = "655e3b32ce3bdddd5e6e8768596e5d4bdef82d0dd37067c324cc4b2daa207306";
   };
 
   prePatch = "patchShebangs .";

From c93c160cbbd93c2b0ebf73012a43bf19c75c637a Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Sun, 26 Aug 2018 16:51:59 +0000
Subject: [PATCH 248/294] perlPackages.AlienWxWidgets: fix build

---
 pkgs/top-level/perl-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 7761e42f544..62075351342 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -133,7 +133,7 @@ let
       url = "mirror://cpan/authors/id/M/MD/MDOOTSON/${name}.tar.gz";
       sha256 = "0jg2dmkzhj03f6b0vmv597yryfw9cclsdn9ynvvlrzzgpd5lw8jk";
     };
-    propagatedBuildInputs = [ pkgs.pkgconfig pkgs.gtk2 pkgs.wxGTK ModulePluggable ];
+    propagatedBuildInputs = [ pkgs.pkgconfig pkgs.gtk2 pkgs.wxGTK30 ModulePluggable ];
     buildInputs = [ LWPProtocolHttps ];
   };
 

From e76c0cdbd199f6516be5e298c4802bef39a41544 Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Sun, 26 Aug 2018 16:53:12 +0000
Subject: [PATCH 249/294] perlPackages.ArchiveZip: fix build

---
 pkgs/top-level/perl-packages.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 7761e42f544..837c44d162c 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -531,6 +531,7 @@ let
       url = mirror://cpan/authors/id/P/PH/PHRED/Archive-Zip-1.62.tar.gz;
       sha256 = "1jax173w7nm5r6k7ymfcskvs1rw590lyscbqrnfbkjj4cxc65wrb";
     };
+    buildInputs = [ TestMockModule ];
     meta = {
       description = "Provide an interface to ZIP archive files";
       license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ];

From e668ec5665fde338bad04b52c67fdf47bff1f83f Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Sun, 26 Aug 2018 20:10:26 +0000
Subject: [PATCH 250/294] perlPackages.SVNSimple: fix build with non-default
 perl

---
 pkgs/top-level/perl-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 00f012c767e..be5bf77e93e 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -14260,7 +14260,7 @@ let
       url = "mirror://cpan/authors/id/C/CL/CLKAO/${name}.tar.gz";
       sha256 = "1ysgi38zx236cxz539k6d6rw5z0vc70rrglsaf5fk6rnwilw2g6n";
     };
-    propagatedBuildInputs = [ pkgs.subversionClient ];
+    propagatedBuildInputs = [ (pkgs.subversionClient.override { inherit perl; }) ];
   };
 
   Swim = buildPerlPackage rec {

From 0e530b037d50985107899c94104175df629e8544 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sun, 26 Aug 2018 17:09:44 -0700
Subject: [PATCH 251/294] e2fsprogs: 1.44.3 -> 1.44.4 (#45602)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/e2fsprogs/versions.
---
 pkgs/tools/filesystems/e2fsprogs/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/filesystems/e2fsprogs/default.nix b/pkgs/tools/filesystems/e2fsprogs/default.nix
index 0e983ca219b..d5f43e31702 100644
--- a/pkgs/tools/filesystems/e2fsprogs/default.nix
+++ b/pkgs/tools/filesystems/e2fsprogs/default.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPackages, fetchurl, pkgconfig, libuuid, gettext, texinfo, perl }:
 
 stdenv.mkDerivation rec {
-  name = "e2fsprogs-1.44.3";
+  name = "e2fsprogs-1.44.4";
 
   src = fetchurl {
     url = "mirror://sourceforge/e2fsprogs/${name}.tar.gz";
-    sha256 = "1gl34i2dy1n7aky9g0jgdybl3ar2zh8i8xnghrcbb5pvws66vbn2";
+    sha256 = "1cnwfmv9r7s73xhgghqspjq593pc4qghh80wjd0kjdgwy247cw6x";
   };
 
   outputs = [ "bin" "dev" "out" "man" "info" ];

From 91b01208a0bdbf88213d1a4b40a35d249c035ac7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Thu, 30 Aug 2018 09:56:16 +0200
Subject: [PATCH 252/294] gnome3.gnome-shell: fix build (missing xsltproc)

---
 pkgs/desktops/gnome-3/core/gnome-shell/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/gnome-3/core/gnome-shell/default.nix b/pkgs/desktops/gnome-3/core/gnome-shell/default.nix
index b4d309e1981..8e09c960e75 100644
--- a/pkgs/desktops/gnome-3/core/gnome-shell/default.nix
+++ b/pkgs/desktops/gnome-3/core/gnome-shell/default.nix
@@ -2,7 +2,7 @@
 , python3Packages, libsoup, polkit, clutter, networkmanager, docbook_xsl , docbook_xsl_ns, at-spi2-core
 , libstartup_notification, telepathy-glib, telepathy-logger, libXtst, unzip, glibcLocales, shared-mime-info
 , libgweather, libcanberra-gtk3, librsvg, geoclue2, perl, docbook_xml_dtd_42, desktop-file-utils
-, libpulseaudio, libical, gobjectIntrospection, gstreamer, wrapGAppsHook
+, libpulseaudio, libical, gobjectIntrospection, gstreamer, wrapGAppsHook, libxslt
 , accountsservice, gdk_pixbuf, gdm, upower, ibus, networkmanagerapplet
 , sassc, systemd, gst_all_1 }:
 
@@ -27,7 +27,7 @@ in stdenv.mkDerivation rec {
 
   nativeBuildInputs = [
     meson ninja pkgconfig gettext docbook_xsl docbook_xsl_ns docbook_xml_dtd_42 perl wrapGAppsHook glibcLocales
-    sassc desktop-file-utils
+    sassc desktop-file-utils libxslt.bin
   ];
   buildInputs = with gnome3; [
     systemd caribou

From 0abb01085dcc0c3f7e6078e95b600cdd021ed010 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:41:24 +0200
Subject: [PATCH 253/294] python: absl-py: 0.4.0 -> 0.4.1

---
 pkgs/development/python-modules/absl-py/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/absl-py/default.nix b/pkgs/development/python-modules/absl-py/default.nix
index 17a0240f7e8..a087eaeca83 100644
--- a/pkgs/development/python-modules/absl-py/default.nix
+++ b/pkgs/development/python-modules/absl-py/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "absl-py";
-  version = "0.4.0";
+  version = "0.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "932e6acb1a57bdcfb784a1ce6ad46a2f50b89d355a5619ed6df60db1414173d2";
+    sha256 = "1e6e70506fb4d867cf269af7bcc27b744c36bbc4c516f0f8ccf2039956deea72";
   };
 
   propagatedBuildInputs = [ six ];

From b92d2f605798684c515192564413c6eeaeffba00 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:41:32 +0200
Subject: [PATCH 254/294] python: aws-adfs: 0.12.0 -> 0.12.1

---
 pkgs/development/python-modules/aws-adfs/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/aws-adfs/default.nix b/pkgs/development/python-modules/aws-adfs/default.nix
index c42ad6f1d6c..bce64a635e3 100644
--- a/pkgs/development/python-modules/aws-adfs/default.nix
+++ b/pkgs/development/python-modules/aws-adfs/default.nix
@@ -2,12 +2,12 @@
 , pytest, pytestrunner, pytestcov, mock, glibcLocales, lxml, boto3, requests, click, configparser }:
 
 buildPythonPackage rec {
-  version = "0.12.0";
+  version = "0.12.1";
   pname = "aws-adfs";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1cjrm61k6905dmhgrqyc5caxx5hbhj3sr6cx4r6sbdyz453i7pc6";
+    sha256 = "72725d7005252b96ccfa9719fe4beec2b86301bff894d4d97a50fc1d05393fd8";
   };
 
   # Relax version constraint

From 1708c82213631603d4003dfd692232f787b11b96 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:41:39 +0200
Subject: [PATCH 255/294] python: botocore: 1.11.1 -> 1.11.4

---
 pkgs/development/python-modules/botocore/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix
index 32e527e8b67..40de7c384e5 100644
--- a/pkgs/development/python-modules/botocore/default.nix
+++ b/pkgs/development/python-modules/botocore/default.nix
@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.11.1";
+  version = "1.11.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5b2d2393c02a082d605dac13c1322c3c553a4d4cf23de7b48268ae7f4a105eb3";
+    sha256 = "284f25a67fa3470314ce78a53e57df8591549652ae31dce1097acefec195b694";
   };
 
   propagatedBuildInputs = [

From 8d67b3f2ee042f6396c46c55e8a0c36e43da54d2 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:41:46 +0200
Subject: [PATCH 256/294] python: deform: 2.0.5 -> 2.0.6

---
 pkgs/development/python-modules/deform/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/deform/default.nix b/pkgs/development/python-modules/deform/default.nix
index 53286b38722..3951558cf27 100644
--- a/pkgs/development/python-modules/deform/default.nix
+++ b/pkgs/development/python-modules/deform/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "deform";
-  version = "2.0.5";
+  version = "2.0.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "874d3346a02c500432efdcc73b1a7174aa0ea69cd52a99bb9a812967f54f6f79";
+    sha256 = "bda0b809c8a668e105e30650a6766103207eafdd12c313acd59274ccd2c4d297";
   };
 
   postPatch = ''

From 7677c18e1948aaef1a800cf2e2a3a6091d1b3f65 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:41:53 +0200
Subject: [PATCH 257/294] python: dftfit: 0.4.11 -> 0.4.22

---
 pkgs/development/python-modules/dftfit/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/dftfit/default.nix b/pkgs/development/python-modules/dftfit/default.nix
index 711f4ac1e0e..01bd23c4b6f 100644
--- a/pkgs/development/python-modules/dftfit/default.nix
+++ b/pkgs/development/python-modules/dftfit/default.nix
@@ -21,12 +21,12 @@
 
 buildPythonPackage rec {
   pname = "dftfit";
-  version = "0.4.11";
+  version = "0.4.22";
   disabled = (!isPy3k);
 
   src = fetchPypi {
      inherit pname version;
-     sha256 = "c6e36a793f9f94746bb8a04fb8316404aeacfa918704de07b15e1b4b8b62242d";
+     sha256 = "06dbdc21cf9ed199bfceae5301172bee2164a3b9ef6f0814a089530c320ebb3a";
   };
 
   buildInputs = [ pytestrunner ];

From d126f735f14328f6851f1c350779401fc7cf532d Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:00 +0200
Subject: [PATCH 258/294] python: Faker: 0.8.17 -> 0.8.18

---
 pkgs/development/python-modules/faker/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/faker/default.nix b/pkgs/development/python-modules/faker/default.nix
index 74ed13da8b4..93337aa8d18 100644
--- a/pkgs/development/python-modules/faker/default.nix
+++ b/pkgs/development/python-modules/faker/default.nix
@@ -8,11 +8,11 @@ assert pythonOlder "3.3" -> ipaddress != null;
 
 buildPythonPackage rec {
   pname = "Faker";
-  version = "0.8.17";
+  version = "0.8.18";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0e9a1227a3a0f3297a485715e72ee6eb77081b17b629367042b586e38c03c867";
+    sha256 = "0184fa252f86214308bb6bed344f96294f2e3528fbffafc727890cf2a86d6027";
   };
 
   checkInputs = [

From 68b99fc3779137a40a13feabcb4ad474e6368bf6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:07 +0200
Subject: [PATCH 259/294] python: joblib: 0.12.2 -> 0.12.3

---
 pkgs/development/python-modules/joblib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/joblib/default.nix b/pkgs/development/python-modules/joblib/default.nix
index 9133980754e..7164fd1197b 100644
--- a/pkgs/development/python-modules/joblib/default.nix
+++ b/pkgs/development/python-modules/joblib/default.nix
@@ -9,10 +9,10 @@
 
 buildPythonPackage rec {
   pname = "joblib";
-  version = "0.12.2";
+  version = "0.12.3";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e9f04885cf11704669f3a731ea6ac00bbc7dea16137aa4394ef7c272cdb9d008";
+    sha256 = "333b9bf16ff015d6b56bf80b9831afdd243443cb84c7ff7b6e342f117e354c42";
   };
 
   checkInputs = [ sphinx numpydoc pytest ];

From 0075504e55abec4602db600bd8fa7b6948040c07 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:13 +0200
Subject: [PATCH 260/294] python: jupyterlab: 0.34.2 -> 0.34.6

---
 pkgs/development/python-modules/jupyterlab/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jupyterlab/default.nix b/pkgs/development/python-modules/jupyterlab/default.nix
index f6cbea2c36e..23aaff8a728 100644
--- a/pkgs/development/python-modules/jupyterlab/default.nix
+++ b/pkgs/development/python-modules/jupyterlab/default.nix
@@ -1,12 +1,12 @@
 { lib, buildPythonPackage, isPy3k, fetchPypi, ipython_genutils, jupyterlab_launcher, notebook }:
 buildPythonPackage rec {
   pname = "jupyterlab";
-  version = "0.34.2";
+  version = "0.34.6";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "37f66118b35c11fd51f0680e665139d62f86fe54f1e30d2517a1eabb30616ce4";
+    sha256 = "d6e5a3855a0d55e6aa4ab704379da5da3db2e652442e79acfa2e9d14ef50ccb3";
   };
 
   propagatedBuildInputs = [

From 92855be2de5560bbafa248c5131831ad654a4ae2 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:20 +0200
Subject: [PATCH 261/294] python: moto: 1.3.4 -> 1.3.5

---
 pkgs/development/python-modules/moto/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/moto/default.nix b/pkgs/development/python-modules/moto/default.nix
index 6d2c503d5ef..6d1faefcba3 100644
--- a/pkgs/development/python-modules/moto/default.nix
+++ b/pkgs/development/python-modules/moto/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "moto";
-  version = "1.3.4";
+  version = "1.3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7c86d1c3bd6362954afaded735354c11afd22037eb6736152f057a1bff0c8868";
+    sha256 = "52426f2567e51ba73fdc7c7d617236b7e7918dca2421caabe13e5290942b53d8";
   };
 
   postPatch = ''

From 88800b80f0913615cd261978e7fb7480688007d6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:27 +0200
Subject: [PATCH 262/294] python: openpyxl: 2.5.5 -> 2.5.6

---
 pkgs/development/python-modules/openpyxl/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/openpyxl/default.nix b/pkgs/development/python-modules/openpyxl/default.nix
index 311b12c12ae..6445201c40b 100644
--- a/pkgs/development/python-modules/openpyxl/default.nix
+++ b/pkgs/development/python-modules/openpyxl/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "openpyxl";
-  version = "2.5.5";
+  version = "2.5.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0f391b0035d7c98f25aad539726e8efc77eea250ff1a120ea7d264c03a16f5fe";
+    sha256 = "04091e034911a0afc531c3a15e5ae0b1b6a43654dbf63c187f47d20cdfefac1c";
   };
 
   checkInputs = [ pytest ];

From e8ff5774aabf66be74d738039e6f63f79c0c452a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:34 +0200
Subject: [PATCH 263/294] python: persistent: 4.4.1 -> 4.4.2

---
 pkgs/development/python-modules/persistent/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/persistent/default.nix b/pkgs/development/python-modules/persistent/default.nix
index 903be34ed0f..542a68728af 100644
--- a/pkgs/development/python-modules/persistent/default.nix
+++ b/pkgs/development/python-modules/persistent/default.nix
@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "persistent";
-  version = "4.4.1";
+  version = "4.4.2";
 
   propagatedBuildInputs = [ zope_interface ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2aedeaaf09fed52f63324b178d0addfe1c558340d68d04aafe85abafaafd8699";
+    sha256 = "451c756b4f4faa5f06f87d57f5928758bb3a16a586ceaa8773c35367188eddf9";
   };
 
   meta = {

From 630fd86bc72041b22054330f44f285aeec61aa7a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:41 +0200
Subject: [PATCH 264/294] python: phonenumbers: 8.9.11 -> 8.9.12

---
 pkgs/development/python-modules/phonenumbers/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/phonenumbers/default.nix b/pkgs/development/python-modules/phonenumbers/default.nix
index 42a12f72158..a6ca8fae7cb 100644
--- a/pkgs/development/python-modules/phonenumbers/default.nix
+++ b/pkgs/development/python-modules/phonenumbers/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "phonenumbers";
-  version = "8.9.11";
+  version = "8.9.12";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1c31db3859aada0568e7afe7231c4e795f34bfcf5749e31c9d1da3c72ba7059b";
+    sha256 = "39cd0c67a17a9ca4c2851ab8fad5272948d811ccd2a8e52ddcc8d275a802af70";
   };
 
   meta = {

From 8a6b20cbad345bc32b7afe97c9f489a59e258164 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:48 +0200
Subject: [PATCH 265/294] python: pytest: 3.7.2 -> 3.7.4

---
 pkgs/development/python-modules/pytest/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest/default.nix b/pkgs/development/python-modules/pytest/default.nix
index 3fae0442a66..3770f62f1a5 100644
--- a/pkgs/development/python-modules/pytest/default.nix
+++ b/pkgs/development/python-modules/pytest/default.nix
@@ -3,7 +3,7 @@
 , atomicwrites, mock, writeText, pathlib2
 }:
 buildPythonPackage rec {
-  version = "3.7.2";
+  version = "3.7.4";
   pname = "pytest";
 
   preCheck = ''
@@ -13,7 +13,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3459a123ad5532852d36f6f4501dfe1acf4af1dd9541834a164666aa40395b02";
+    sha256 = "2d7c49e931316cc7d1638a3e5f54f5d7b4e5225972b3c9838f3584788d27f349";
   };
 
   checkInputs = [ hypothesis mock ];

From 36cd6f2bd5ede21e43bef865de15c1b86a56a765 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:42:55 +0200
Subject: [PATCH 266/294] python: pytest-timeout: 1.3.1 -> 1.3.2

---
 pkgs/development/python-modules/pytest-timeout/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest-timeout/default.nix b/pkgs/development/python-modules/pytest-timeout/default.nix
index 012226de053..8c697b8b2ec 100644
--- a/pkgs/development/python-modules/pytest-timeout/default.nix
+++ b/pkgs/development/python-modules/pytest-timeout/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "pytest-timeout";
-  version = "1.3.1";
+  version = "1.3.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4b261bec5782b603c98b4bb803484bc96bf1cdcb5480dae0999d21c7e0423a23";
+    sha256 = "1117fc0536e1638862917efbdc0895e6b62fa61e6cf4f39bb655686af7af9627";
   };
   buildInputs = [ pytest ];
   checkInputs = [ pytest pexpect ];

From cdccb7b650f9b7fe4031fcf483df3899bf792ef4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:43:01 +0200
Subject: [PATCH 267/294] python: regex: 2018.08.17 -> 2018.08.29

---
 pkgs/development/python-modules/regex/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/regex/default.nix b/pkgs/development/python-modules/regex/default.nix
index 2394858e13e..57d8ca4a263 100644
--- a/pkgs/development/python-modules/regex/default.nix
+++ b/pkgs/development/python-modules/regex/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "regex";
-  version = "2018.08.17";
+  version = "2018.08.29";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "56494baf1ed525deea426d3676b1ae3fdcc906b55eccfcb4ea928453e11f2a43";
+    sha256 = "b73cea07117dca888b0c3671770b501bef19aac9c45c8ffdb5bea2cca2377b0a";
   };
 
   postCheck = ''

From e8adeef855dff4a917b3a233a8ad46fb81115e82 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:43:08 +0200
Subject: [PATCH 268/294] python: sockjs-tornado: 1.0.3 -> 1.0.5

---
 pkgs/development/python-modules/sockjs-tornado/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/sockjs-tornado/default.nix b/pkgs/development/python-modules/sockjs-tornado/default.nix
index b8b67f708e6..32ac94da761 100644
--- a/pkgs/development/python-modules/sockjs-tornado/default.nix
+++ b/pkgs/development/python-modules/sockjs-tornado/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "sockjs-tornado";
-  version = "1.0.3";
+  version = "1.0.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "16cff40nniqsyvda1pb2j3b4zwmrw7y2g1vqq78lp20xpmhnwwkd";
+    sha256 = "4c4bcf33c8a238bbab37d01da769bcf89e74ef6019bfa76ddbcb4d682d47187e";
   };
 
   propagatedBuildInputs = [ tornado ];

From 7560a6f7530c0af67aad1dc8ce13c64a5952033a Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:43:15 +0200
Subject: [PATCH 269/294] python: Sphinx: 1.7.7 -> 1.7.8

---
 pkgs/development/python-modules/sphinx/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/sphinx/default.nix b/pkgs/development/python-modules/sphinx/default.nix
index 525ff4122d8..9e71766065c 100644
--- a/pkgs/development/python-modules/sphinx/default.nix
+++ b/pkgs/development/python-modules/sphinx/default.nix
@@ -26,10 +26,10 @@
 
 buildPythonPackage rec {
   pname = "Sphinx";
-  version = "1.7.7";
+  version = "1.7.8";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "71531900af3f68625a29c4e00381bee8f85255219a3d500a3e255076a45b735e";
+    sha256 = "a07050845cc9a2f4026a6035cc8ed795a5ce7be6528bbc82032385c10807dfe7";
   };
   LC_ALL = "en_US.UTF-8";
 

From 997cb5c3cfcb40418ffc62114d322dd14ff15b78 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:43:22 +0200
Subject: [PATCH 270/294] python: typing: 3.6.4 -> 3.6.6

---
 pkgs/development/python-modules/typing/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/typing/default.nix b/pkgs/development/python-modules/typing/default.nix
index d1a9185d5a1..e363ca22cf2 100644
--- a/pkgs/development/python-modules/typing/default.nix
+++ b/pkgs/development/python-modules/typing/default.nix
@@ -5,11 +5,11 @@ let
 
 in buildPythonPackage rec {
   pname = "typing";
-  version = "3.6.4";
+  version = "3.6.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d400a9344254803a2368533e4533a4200d21eb7b6b729c173bc38201a74db3f2";
+    sha256 = "4027c5f6127a6267a435201981ba156de91ad0d1d98e9ddc2aa173453453492d";
   };
 
   # Error for Python3.6: ImportError: cannot import name 'ann_module'

From a0d69a564207c62287f2b72c706a3a1bd953c8c8 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:43:29 +0200
Subject: [PATCH 271/294] python: XlsxWriter: 1.0.7 -> 1.0.9

---
 pkgs/development/python-modules/XlsxWriter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/XlsxWriter/default.nix b/pkgs/development/python-modules/XlsxWriter/default.nix
index a72fabb35cd..71229b886e7 100644
--- a/pkgs/development/python-modules/XlsxWriter/default.nix
+++ b/pkgs/development/python-modules/XlsxWriter/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "XlsxWriter";
-  version = "1.0.7";
+  version = "1.0.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1224b971c174f33b954f9a1906679d0049399bd6a5a8c78bbae2d6c2c4facebd";
+    sha256 = "98a94b32d4929d3e34595b4654b8e7f951182f540056b9cb734c88899912f729";
   };
 
   meta = {

From 0666f784ee4c473db982e7f7f59ff06f4aedc5b0 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:55:44 +0200
Subject: [PATCH 272/294] pythonPackages.boto3: 1.7.57 -> 1.7.84

---
 pkgs/development/python-modules/boto3/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/boto3/default.nix b/pkgs/development/python-modules/boto3/default.nix
index dca7844dec9..31f050007a6 100644
--- a/pkgs/development/python-modules/boto3/default.nix
+++ b/pkgs/development/python-modules/boto3/default.nix
@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname =  "boto3";
-  version = "1.7.57";
+  version = "1.7.84";
 
   src = fetchFromGitHub {
     owner = "boto";
     repo  = "boto3";
     rev   = version;
-    sha256 = "0rp3vclx7mvfl6isa47m7dzlrf33qb9vj53p0gj4cw3mgl14cnbl";
+    sha256 = "0d9kqjqmnn53p1xpmdbbjxcxv2482yx3vjhxw8izp0mpq58i5c14";
   };
 
   propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ];

From 37afcbf0f5714322f8de95b24fa807b1b532b3da Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:56:07 +0200
Subject: [PATCH 273/294] pythonPackages.folium: add missing numpy runtime
 dependency

---
 pkgs/development/python-modules/folium/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/folium/default.nix b/pkgs/development/python-modules/folium/default.nix
index e1c4306b1f8..7ff4a37d6d3 100644
--- a/pkgs/development/python-modules/folium/default.nix
+++ b/pkgs/development/python-modules/folium/default.nix
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     sha256 = "08681be47b1861221bc7cf17b6e368a8d734db81682d716c22a11e839f47cb79";
   };
 
-  checkInputs = [ pytest numpy nbconvert pandas mock ];
+  checkInputs = [ pytest nbconvert pandas mock ];
   propagatedBuildInputs = [ jinja2 branca six requests numpy ];
 
   # No tests in archive

From 503f80887038f0168ee95052f54369f9283a08ae Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 17:56:34 +0200
Subject: [PATCH 274/294] pythonPackages.pytestrunner: failed attempt at
 enabling tests

---
 .../python-modules/pytestrunner/default.nix           | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/pkgs/development/python-modules/pytestrunner/default.nix b/pkgs/development/python-modules/pytestrunner/default.nix
index 71b1260a540..4d9b9b76157 100644
--- a/pkgs/development/python-modules/pytestrunner/default.nix
+++ b/pkgs/development/python-modules/pytestrunner/default.nix
@@ -11,6 +11,17 @@ buildPythonPackage rec {
 
   buildInputs = [ setuptools_scm pytest ];
 
+  postPatch = ''
+    rm pytest.ini
+  '';
+
+  checkPhase = ''
+    py.test tests
+  '';
+
+  # Fixture not found
+  doCheck = false;
+
   meta = with stdenv.lib; {
     description = "Invoke py.test as distutils command with dependency resolution";
     homepage = https://bitbucket.org/pytest-dev/pytest-runner;

From a8d69de93ff8665b35287a465a7eb996c9a2b232 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Thu, 30 Aug 2018 18:33:11 +0200
Subject: [PATCH 275/294] python.pkgs.sarge: disable tests

---
 pkgs/development/python-modules/sarge/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/python-modules/sarge/default.nix b/pkgs/development/python-modules/sarge/default.nix
index cf9e175490d..b2eb0668de6 100644
--- a/pkgs/development/python-modules/sarge/default.nix
+++ b/pkgs/development/python-modules/sarge/default.nix
@@ -9,6 +9,9 @@ buildPythonPackage rec {
     sha256 = "da8cc90883f8e5ab4af0d746438f608662f5f2a35da2e858517927edefa134b0";
   };
 
+  # No tests in PyPI tarball
+  doCheck = false;
+
   meta = with lib; {
     homepage = http://sarge.readthedocs.org/;
     description = "A wrapper for subprocess which provides command pipeline functionality";

From 57f1adc41447eee903025ee29dcb2457a8f2b375 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 18:15:07 +0200
Subject: [PATCH 276/294] pythonPackages.boto3: 1.7.84 -> 1.8.4

---
 pkgs/development/python-modules/boto3/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/boto3/default.nix b/pkgs/development/python-modules/boto3/default.nix
index 31f050007a6..6aba6e10289 100644
--- a/pkgs/development/python-modules/boto3/default.nix
+++ b/pkgs/development/python-modules/boto3/default.nix
@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname =  "boto3";
-  version = "1.7.84";
+  version = "1.8.4";
 
   src = fetchFromGitHub {
     owner = "boto";
     repo  = "boto3";
     rev   = version;
-    sha256 = "0d9kqjqmnn53p1xpmdbbjxcxv2482yx3vjhxw8izp0mpq58i5c14";
+    sha256 = "1ja71r7xsijfy0qqqqxanhhg5fk4ad0mgvxyjg7ag0z3z04s1169";
   };
 
   propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ];

From cded4f2cf9e2e53fa7309f7063de6e10e8c91aa4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 18:15:23 +0200
Subject: [PATCH 277/294] awscli: 1.16.1 -> 1.16.4

---
 pkgs/tools/admin/awscli/default.nix | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/tools/admin/awscli/default.nix b/pkgs/tools/admin/awscli/default.nix
index 92e5459df49..f63a37d388f 100644
--- a/pkgs/tools/admin/awscli/default.nix
+++ b/pkgs/tools/admin/awscli/default.nix
@@ -19,11 +19,11 @@ let
 
 in py.pkgs.buildPythonApplication rec {
   pname = "awscli";
-  version = "1.16.1";
+  version = "1.16.4";
 
   src = py.pkgs.fetchPypi {
     inherit pname version;
-    sha256 = "5068efde694e24462646d271335fdef3dde8a0fbbfb986fab0ce7e5368a7df8d";
+    sha256 = "036cad15f7a551f3d1281b305deb04c6cf05aa3c23fa6d2bba7a0dc4eb5256de";
   };
 
   # No tests included
@@ -42,11 +42,11 @@ in py.pkgs.buildPythonApplication rec {
     less
   ];
 
-  postPatch = ''
-    for i in {py,cfg}; do
-      substituteInPlace setup.$i --replace "botocore==1.10.10" "botocore>=1.10.9,<=1.11"
-    done
-  '';
+#   postPatch = ''
+#     for i in {py,cfg}; do
+#       substituteInPlace setup.$i --replace "botocore==1.10.10" "botocore>=1.10.9,<=1.11"
+#     done
+#   '';
 
   postInstall = ''
     mkdir -p $out/etc/bash_completion.d

From 5918fc460125cc1b697b2bbed813681c1e711c55 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 18:17:25 +0200
Subject: [PATCH 278/294] pythonPackages.cement: disable Python 2

---
 pkgs/development/python-modules/cement/default.nix | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/cement/default.nix b/pkgs/development/python-modules/cement/default.nix
index 8947ff436fa..16b74913b7b 100644
--- a/pkgs/development/python-modules/cement/default.nix
+++ b/pkgs/development/python-modules/cement/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi }:
+{ stdenv, buildPythonPackage, fetchPypi, isPy3k }:
 
 buildPythonPackage rec {
   pname = "cement";
@@ -13,6 +13,8 @@ buildPythonPackage rec {
   # 127.0.0.1:11211.
   doCheck = false;
 
+  disabled = !isPy3k;
+
   meta = with stdenv.lib; {
     homepage = http://builtoncement.com/;
     description = "A CLI Application Framework for Python.";

From 7f50451d3cbe4137f96d6438fb25fcfd6f278d92 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 18:33:42 +0200
Subject: [PATCH 279/294] Revert "python: shippai: 0.2.3 -> 0.3.1"

This broke vdirsyncer.

This reverts commit 0bca28c89078ddc25aca0c1f8c50d3bafdd36412.
---
 pkgs/development/python-modules/shippai/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/shippai/default.nix b/pkgs/development/python-modules/shippai/default.nix
index b386fe6c2fa..ac035061692 100644
--- a/pkgs/development/python-modules/shippai/default.nix
+++ b/pkgs/development/python-modules/shippai/default.nix
@@ -3,11 +3,11 @@
 buildPythonPackage rec {
   pname = "shippai";
   # Please make sure that vdirsyncer still builds if you update this package.
-  version = "0.3.1";
+  version = "0.2.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9e8d1ca5a742a7ea175cebda3090497d42348517e8d2f05f9854d0f30f1a48ad";
+    sha256 = "1ppwywzg4d12h658682ssmingm6ls6a96p4ak26i2w9d4lf8pfsc";
   };
 
   meta = with stdenv.lib; {

From ee5bff207f8fba15c2da4ef71adf9c6e0aef0e22 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 18:39:11 +0200
Subject: [PATCH 280/294] Revert "python.pkgs.python-jose: 2.0.2 -> 3.0.0"

This breaks moto.

This reverts commit a6d3577d3d9a5aee20a88eb92de8dee266354269.
---
 .../python-modules/python-jose/default.nix        | 15 ++++++++-------
 1 file changed, 8 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/python-modules/python-jose/default.nix b/pkgs/development/python-modules/python-jose/default.nix
index cb99e5fa273..68b46743d35 100644
--- a/pkgs/development/python-modules/python-jose/default.nix
+++ b/pkgs/development/python-modules/python-jose/default.nix
@@ -1,29 +1,30 @@
 { stdenv, buildPythonPackage, fetchFromGitHub
-, six, ecdsa, rsa, future, pytest, cryptography, pycryptodome
+, future, six, ecdsa, pycryptodome, pytest, cryptography
 }:
 
 buildPythonPackage rec {
   pname = "python-jose";
-  version = "3.0.0";
+  version = "2.0.2";
 
   # no tests in PyPI tarball
   src = fetchFromGitHub {
     owner = "mpdavis";
     repo = "python-jose";
-    rev = version;
-    sha256 = "1dq8v87abqxv07wi403ywjk9jg1da125fviycqzki48cjxx0dhwj";
+    # 2.0.2 not tagged on GitHub
+    # see https://github.com/mpdavis/python-jose/issues/86
+    rev = "28cc6719eceb89129eed59c25f7bdac015665bdd";
+    sha256 = "03wkq2rszy0rzy5gygsh4s7i6ls8zflgbcvxnflvmh7nis7002fp";
   };
 
   checkInputs = [
     pytest
-    # optional dependencies, but needed in tests
-    cryptography pycryptodome
+    cryptography # optional dependency, but needed in tests
   ];
   checkPhase = ''
     py.test
   '';
 
-  propagatedBuildInputs = [ six ecdsa rsa future ];
+  propagatedBuildInputs = [ future six ecdsa pycryptodome ];
 
   meta = with stdenv.lib; {
     homepage = https://github.com/mpdavis/python-jose;

From f823ca57522998089164c005004df052770db3b6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 18:58:10 +0200
Subject: [PATCH 281/294] pythonPackages.scipy: disable tests

We should try to get these enabled again asap.
https://github.com/scipy/scipy/pull/8871#issuecomment-417391433
---
 pkgs/development/python-modules/scipy/default.nix | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/scipy/default.nix b/pkgs/development/python-modules/scipy/default.nix
index 41878b19d08..140e8cc80b4 100644
--- a/pkgs/development/python-modules/scipy/default.nix
+++ b/pkgs/development/python-modules/scipy/default.nix
@@ -1,4 +1,4 @@
-{lib, fetchPypi, python, buildPythonPackage, gfortran, nose, pytest, numpy}:
+{lib, fetchPypi, python, buildPythonPackage, gfortran, nose, pytest, numpy, fetchpatch}:
 
 buildPythonPackage rec {
   pname = "scipy";
@@ -18,6 +18,10 @@ buildPythonPackage rec {
     rm scipy/linalg/tests/test_lapack.py
   '';
 
+  # INTERNALERROR, solved with https://github.com/scipy/scipy/pull/8871
+  # however, it does not apply cleanly.
+  doCheck = false;
+
   preConfigure = ''
     sed -i '0,/from numpy.distutils.core/s//import setuptools;from numpy.distutils.core/' setup.py
     export NPY_NUM_BUILD_JOBS=$NIX_BUILD_CORES

From 32492d9189c64a1d4999f64cd6dfb00605d2a175 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 19:00:02 +0200
Subject: [PATCH 282/294] Python: fix botocore/boto3/awscli mess

Revert "pythonPackages.boto3: 1.7.84 -> 1.8.4"

This reverts commit 06b37899300e0800e7a0ea632fcb5bf0f291e003.

Revert "python: botocore: 1.11.1 -> 1.11.4"

This reverts commit 3b0242d4c014a440b8c1c58cae812dc84496cc95.

Revert "python: botocore: 1.10.75 -> 1.11.1"

This reverts commit 996fd7996713cdedc7e128d9930432c79d637f69.

Revert "awscli: 1.16.1 -> 1.16.4"

This reverts commit 4880df9078bf024fd5a98afa8c6f28833e13f3d3.

Revert "awscli: 1.15.66 -> 1.16.1"

This reverts commit 6923bc8d23e2735708492da627a378de5a53c218.

awscli: fix build

pythonPackages.botocore: 1.10.75 -> 1.10.84
---
 pkgs/development/python-modules/boto3/default.nix  |  4 ++--
 .../python-modules/botocore/default.nix            |  6 ++----
 pkgs/tools/admin/awscli/default.nix                | 14 +++++++-------
 3 files changed, 11 insertions(+), 13 deletions(-)

diff --git a/pkgs/development/python-modules/boto3/default.nix b/pkgs/development/python-modules/boto3/default.nix
index 6aba6e10289..31f050007a6 100644
--- a/pkgs/development/python-modules/boto3/default.nix
+++ b/pkgs/development/python-modules/boto3/default.nix
@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname =  "boto3";
-  version = "1.8.4";
+  version = "1.7.84";
 
   src = fetchFromGitHub {
     owner = "boto";
     repo  = "boto3";
     rev   = version;
-    sha256 = "1ja71r7xsijfy0qqqqxanhhg5fk4ad0mgvxyjg7ag0z3z04s1169";
+    sha256 = "0d9kqjqmnn53p1xpmdbbjxcxv2482yx3vjhxw8izp0mpq58i5c14";
   };
 
   propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ];
diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix
index 40de7c384e5..989b6e944de 100644
--- a/pkgs/development/python-modules/botocore/default.nix
+++ b/pkgs/development/python-modules/botocore/default.nix
@@ -7,16 +7,15 @@
 , simplejson
 , mock
 , nose
-, urllib3
 }:
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.11.4";
+  version = "1.10.84";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "284f25a67fa3470314ce78a53e57df8591549652ae31dce1097acefec195b694";
+    sha256 = "d3e4b5a2c903ea30d19d41ea2f65d0e51dce54f4f4c4dfd6ecd7b04f240844a8";
   };
 
   propagatedBuildInputs = [
@@ -25,7 +24,6 @@ buildPythonPackage rec {
     docutils
     ordereddict
     simplejson
-    urllib3
   ];
 
   checkInputs = [ mock nose ];
diff --git a/pkgs/tools/admin/awscli/default.nix b/pkgs/tools/admin/awscli/default.nix
index f63a37d388f..ccd9f05a335 100644
--- a/pkgs/tools/admin/awscli/default.nix
+++ b/pkgs/tools/admin/awscli/default.nix
@@ -19,11 +19,11 @@ let
 
 in py.pkgs.buildPythonApplication rec {
   pname = "awscli";
-  version = "1.16.4";
+  version = "1.15.66";
 
   src = py.pkgs.fetchPypi {
     inherit pname version;
-    sha256 = "036cad15f7a551f3d1281b305deb04c6cf05aa3c23fa6d2bba7a0dc4eb5256de";
+    sha256 = "004fbd3bb8932465205675a7de94460b5c2d45ddd6916138a2c867e4d0f2a4c4";
   };
 
   # No tests included
@@ -42,11 +42,11 @@ in py.pkgs.buildPythonApplication rec {
     less
   ];
 
-#   postPatch = ''
-#     for i in {py,cfg}; do
-#       substituteInPlace setup.$i --replace "botocore==1.10.10" "botocore>=1.10.9,<=1.11"
-#     done
-#   '';
+  postPatch = ''
+    for i in {py,cfg}; do
+      substituteInPlace setup.$i --replace "botocore==1.10.65" "botocore>=1.10.9,<=1.11"
+    done
+  '';
 
   postInstall = ''
     mkdir -p $out/etc/bash_completion.d

From 1c66e6d76da702a4ab38d49addf0f87c6f3517f5 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 19:09:45 +0200
Subject: [PATCH 283/294] pythonPackages.moto: fix build

---
 pkgs/development/python-modules/moto/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/moto/default.nix b/pkgs/development/python-modules/moto/default.nix
index 6d1faefcba3..f9d1fee8973 100644
--- a/pkgs/development/python-modules/moto/default.nix
+++ b/pkgs/development/python-modules/moto/default.nix
@@ -1,6 +1,6 @@
 { buildPythonPackage, fetchPypi, jinja2, werkzeug, flask
 , requests, pytz, backports_tempfile, cookies, jsondiff, botocore, aws-xray-sdk, docker, responses
-, six, boto, httpretty, xmltodict, nose, sure, boto3, freezegun, dateutil, mock, pyaml }:
+, six, boto, httpretty, xmltodict, nose, sure, boto3, freezegun, dateutil, mock, pyaml, python-jose }:
 
 buildPythonPackage rec {
   pname = "moto";
@@ -42,6 +42,7 @@ buildPythonPackage rec {
     botocore
     docker
     responses
+    python-jose
   ];
 
   checkInputs = [ boto3 nose sure freezegun ];

From 39ca3eb6669989053de3ffd4645d5487d9cd6de4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 19:12:47 +0200
Subject: [PATCH 284/294] pythonPackages.cmd2: fix build

---
 pkgs/development/python-modules/cmd2/default.nix | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/cmd2/default.nix b/pkgs/development/python-modules/cmd2/default.nix
index 4c2e78a102e..4217d193cfe 100644
--- a/pkgs/development/python-modules/cmd2/default.nix
+++ b/pkgs/development/python-modules/cmd2/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchPypi, buildPythonPackage, pythonOlder, isPy3k
 , pyperclip, six, pyparsing, vim, wcwidth, colorama
-, contextlib2 ? null
+, contextlib2 ? null, setuptools_scm
 , pytest, mock, which, glibcLocales
 }:
 buildPythonPackage rec {
@@ -31,6 +31,10 @@ buildPythonPackage rec {
   doCheck = !stdenv.isDarwin;
   disabled = !isPy3k;
 
+  buildInputs = [
+    setuptools_scm
+  ];
+
   propagatedBuildInputs = [
     colorama
     pyperclip

From dbd3d509e00ee20be215b8940269718b12bd3a33 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Thu, 30 Aug 2018 19:22:26 +0200
Subject: [PATCH 285/294] awsebcli: use python3

Its dependency cement is disabled on python2 since 36a4df6.
---
 pkgs/tools/virtualization/awsebcli/default.nix | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/virtualization/awsebcli/default.nix b/pkgs/tools/virtualization/awsebcli/default.nix
index b55ac457305..b1693bd262f 100644
--- a/pkgs/tools/virtualization/awsebcli/default.nix
+++ b/pkgs/tools/virtualization/awsebcli/default.nix
@@ -1,7 +1,7 @@
-{ stdenv, python }:
+{ stdenv, python3, glibcLocales }:
 let
 
-  localPython = python.override {
+  localPython = python3.override {
     packageOverrides = self: super: {
       cement = super.cement.overridePythonAttrs (oldAttrs: rec {
         version = "2.8.2";
@@ -61,6 +61,12 @@ in with localPython.pkgs; buildPythonApplication rec {
     sha256 = "128dgxyz2bgl3r4jdkbmjs280004bm0dwzln7p6ly3yjs2x37jl6";
   };
 
+  buildInputs = [
+    glibcLocales
+  ];
+
+  LC_ALL = "en_US.UTF-8";
+
   checkInputs = [
     pytest mock nose pathspec colorama requests docutils
   ];

From 0840e427e6dd1ccc766af5e96e1bfa7a27b45f55 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 30 Aug 2018 19:43:27 +0200
Subject: [PATCH 286/294] pythonPackages.bottleneck: get rid of warnings during
 tests

---
 pkgs/development/python-modules/bottleneck/default.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/bottleneck/default.nix b/pkgs/development/python-modules/bottleneck/default.nix
index c9ca8f7ec04..c4db013ea34 100644
--- a/pkgs/development/python-modules/bottleneck/default.nix
+++ b/pkgs/development/python-modules/bottleneck/default.nix
@@ -1,6 +1,7 @@
 { buildPythonPackage
 , fetchPypi
 , nose
+, pytest
 , numpy
 , python
 }:
@@ -15,10 +16,10 @@ buildPythonPackage rec {
     sha256 = "6efcde5f830aed64feafca0359b51db0e184c72af8ba6675b4a99f263922eb36";
   };
 
-  checkInputs = [ nose ];
+  checkInputs = [ pytest nose ];
   propagatedBuildInputs = [ numpy ];
   checkPhase = ''
-    nosetests -v $out/${python.sitePackages}
+    py.test -p no:warnings $out/${python.sitePackages}
   '';
   postPatch = ''
     substituteInPlace setup.py --replace "__builtins__.__NUMPY_SETUP__ = False" ""

From 30970aa039dd77c32b76bbdfceb9f29f2764d595 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Thu, 30 Aug 2018 21:09:05 +0200
Subject: [PATCH 287/294] python.pkgs.keyrings-alt: fix tests

---
 pkgs/development/python-modules/keyrings-alt/default.nix | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/python-modules/keyrings-alt/default.nix b/pkgs/development/python-modules/keyrings-alt/default.nix
index 9f3fc8dc4d3..9564e4f3703 100644
--- a/pkgs/development/python-modules/keyrings-alt/default.nix
+++ b/pkgs/development/python-modules/keyrings-alt/default.nix
@@ -11,12 +11,15 @@ buildPythonPackage rec {
     sha256 = "0nnva8g03dv6gdhjk1ihn2qw7g15232fyj8shipah9whgfv8d75m";
   };
 
+  postPatch = ''
+    substituteInPlace pytest.ini \
+      --replace "--flake8" ""
+  '';
+
   nativeBuildInputs = [ setuptools_scm ];
   propagatedBuildInputs = [ six ];
 
-  # Fails with "ImportError: cannot import name mock"
-  #doCheck = false;
-  checkInputs = [ pytest pytest-flake8 keyring ] ++ stdenv.lib.optional (pythonOlder "3.3") backports_unittest-mock;
+  checkInputs = [ pytest keyring ] ++ stdenv.lib.optional (pythonOlder "3.3") backports_unittest-mock;
 
   checkPhase = ''
     py.test

From 5a7e9c82376b2771220698092a6d44da0d15d415 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Thu, 30 Aug 2018 21:30:19 +0200
Subject: [PATCH 288/294] python.pkgs.celery: fix tests

---
 pkgs/development/python-modules/celery/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/celery/default.nix b/pkgs/development/python-modules/celery/default.nix
index 8eef07ac3bb..df260b3adb7 100644
--- a/pkgs/development/python-modules/celery/default.nix
+++ b/pkgs/development/python-modules/celery/default.nix
@@ -38,7 +38,7 @@ in buildPythonPackage rec {
     unset NIX_REDIRECTS LD_PRELOAD
   '';
 
-  buildInputs = [ pytest case ];
+  checkInputs = [ pytest_32 case ];
   propagatedBuildInputs = [ kombu billiard pytz anyjson amqp eventlet ];
 
   meta = with stdenv.lib; {

From 6c9f7e2742ba626ccea92874782b2c25f9e292bf Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Thu, 30 Aug 2018 21:52:05 +0200
Subject: [PATCH 289/294] python.pkgs.cairocffi: remove superfluous patch

---
 .../cairocffi-0.8.1-cairo-1.15.12.patch       | 24 -------------------
 .../python-modules/cairocffi/default.nix      |  1 -
 2 files changed, 25 deletions(-)
 delete mode 100644 pkgs/development/python-modules/cairocffi/cairocffi-0.8.1-cairo-1.15.12.patch

diff --git a/pkgs/development/python-modules/cairocffi/cairocffi-0.8.1-cairo-1.15.12.patch b/pkgs/development/python-modules/cairocffi/cairocffi-0.8.1-cairo-1.15.12.patch
deleted file mode 100644
index 4d142275b9e..00000000000
--- a/pkgs/development/python-modules/cairocffi/cairocffi-0.8.1-cairo-1.15.12.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff --git a/cairocffi/test_cairo.py b/cairocffi/test_cairo.py
-index 1588349..5452910 100644
---- a/cairocffi/test_cairo.py
-+++ b/cairocffi/test_cairo.py
-@@ -292,7 +292,8 @@ def test_pdf_surface():
-         pdf_bytes = file_obj.getvalue()
-         assert pdf_bytes.startswith(b'%PDF')
-         assert b'/MediaBox [ 0 0 123 432 ]' in pdf_bytes
--        assert pdf_bytes.count(b'/Type /Page\n') == 1
-+        assert pdf_bytes.count(b'/Type /Pages') == 1
-+        assert pdf_bytes.count(b'/Type /Page') == 2
- 
-     file_obj = io.BytesIO()
-     surface = PDFSurface(file_obj, 1, 1)
-@@ -306,7 +307,8 @@ def test_pdf_surface():
-     assert b'/MediaBox [ 0 0 1 1 ]' not in pdf_bytes
-     assert b'/MediaBox [ 0 0 12 100 ]' in pdf_bytes
-     assert b'/MediaBox [ 0 0 42 700 ]' in pdf_bytes
--    assert pdf_bytes.count(b'/Type /Page\n') == 2
-+    assert pdf_bytes.count(b'/Type /Pages') == 1
-+    assert pdf_bytes.count(b'/Type /Page') == 3
- 
- 
- def test_svg_surface():
diff --git a/pkgs/development/python-modules/cairocffi/default.nix b/pkgs/development/python-modules/cairocffi/default.nix
index 39799daca21..bdd11fb3de6 100644
--- a/pkgs/development/python-modules/cairocffi/default.nix
+++ b/pkgs/development/python-modules/cairocffi/default.nix
@@ -49,7 +49,6 @@ buildPythonPackage rec {
       gdk_pixbuf = gdk_pixbuf.out;
     })
     ./fix_test_scaled_font.patch
-    ./cairocffi-0.8.1-cairo-1.15.12.patch
   ];
 
   meta = with lib; {

From 0b3f257e06ba81f6aa8a369cb4592d5bc0bdb242 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Thu, 30 Aug 2018 22:14:06 +0200
Subject: [PATCH 290/294] octoprint: pin pylru to 1.0.9

---
 pkgs/applications/misc/octoprint/default.nix | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/pkgs/applications/misc/octoprint/default.nix b/pkgs/applications/misc/octoprint/default.nix
index 99d23b0eb7c..41bc94a5130 100644
--- a/pkgs/applications/misc/octoprint/default.nix
+++ b/pkgs/applications/misc/octoprint/default.nix
@@ -62,6 +62,14 @@ let
         # No tests included
         doCheck = false;
       };
+
+      pylru = super.pylru.overridePythonAttrs (oldAttrs: rec {
+        version = "1.0.9";
+        src = oldAttrs.src.override {
+          inherit version;
+          sha256 = "71376192671f0ad1690b2a7427d39a29b1df994c8469a9b46b03ed7e28c0172c";
+        };
+      });
     };
   };
 

From de151625f26cb96a0d2dda439224e58ca144d2d0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Thu, 30 Aug 2018 22:29:31 +0200
Subject: [PATCH 291/294] python.pkgs.natsort: no pyflakes and pep8 checks

---
 pkgs/development/python-modules/natsort/default.nix | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/pkgs/development/python-modules/natsort/default.nix b/pkgs/development/python-modules/natsort/default.nix
index e952129f15d..561135dda57 100644
--- a/pkgs/development/python-modules/natsort/default.nix
+++ b/pkgs/development/python-modules/natsort/default.nix
@@ -4,8 +4,6 @@
 , fetchPypi
 , hypothesis
 , pytestcache
-, pytestflakes
-, pytestpep8
 , pytest
 , glibcLocales
 , mock ? null
@@ -19,8 +17,6 @@ buildPythonPackage rec {
   checkInputs = [
     hypothesis
     pytestcache
-    pytestflakes
-    pytestpep8
     pytest
     glibcLocales
   ]
@@ -37,7 +33,7 @@ buildPythonPackage rec {
   # testing based on project's tox.ini
   checkPhase = ''
     pytest --doctest-modules natsort
-    pytest --flakes --pep8
+    pytest
   '';
 
   meta = {

From 5a9270fe57b09d804488f4d7068dbba7a30359fb Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Thu, 30 Aug 2018 23:18:11 +0200
Subject: [PATCH 292/294] python.pkgs.h5py: disable tests

---
 pkgs/development/python-modules/h5py/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/python-modules/h5py/default.nix b/pkgs/development/python-modules/h5py/default.nix
index 2b95b1473cb..01c33117849 100644
--- a/pkgs/development/python-modules/h5py/default.nix
+++ b/pkgs/development/python-modules/h5py/default.nix
@@ -37,6 +37,9 @@ in buildPythonPackage rec {
   propagatedBuildInputs = [ numpy six]
     ++ optionals mpiSupport [ mpi4py openssh ];
 
+  # https://github.com/h5py/h5py/issues/1088
+  doCheck = false;
+
   meta = {
     description =
       "Pythonic interface to the HDF5 binary data format";

From 43f6ceabb8ae91cdd0fd89b312a814a0079e5a8e Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 1 Sep 2018 10:37:27 +0200
Subject: [PATCH 293/294] pythonPackages.pandas: fix build

---
 pkgs/development/python-modules/pandas/default.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix
index 1cc33ad51e3..02427a52425 100644
--- a/pkgs/development/python-modules/pandas/default.nix
+++ b/pkgs/development/python-modules/pandas/default.nix
@@ -80,6 +80,8 @@ in buildPythonPackage rec {
     "test_oo_optimizable"
     # Disable IO related tests because IO data is no longer distributed
     "io"
+    # KeyError Timestamp
+    "test_to_excel"
   ] ++ optionals isDarwin [
     "test_locale"
     "test_clipboard"

From 355f19653c367a2be81657c4b3839db3106b3562 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Sat, 1 Sep 2018 15:08:53 +0200
Subject: [PATCH 294/294] pythonPackages.more-itertools: avoid doCheck on i686

I expect noone will want to spend time really fixing these,
but it blocks wine from building...
---
 pkgs/development/python-modules/more-itertools/default.nix | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/more-itertools/default.nix b/pkgs/development/python-modules/more-itertools/default.nix
index c39bf461bec..b7131902962 100644
--- a/pkgs/development/python-modules/more-itertools/default.nix
+++ b/pkgs/development/python-modules/more-itertools/default.nix
@@ -3,6 +3,7 @@
 , fetchPypi
 , nose
 , six
+, stdenv
 }:
 
 
@@ -18,9 +19,13 @@ buildPythonPackage rec {
   checkInputs = [ nose ];
   propagatedBuildInputs = [ six ];
 
+  # iterable = range(10 ** 10)  # Is efficiently reversible
+  # OverflowError: Python int too large to convert to C long
+  doCheck = !stdenv.hostPlatform.is32bit;
+
   meta = {
     homepage = https://more-itertools.readthedocs.org;
     description = "Expansion of the itertools module";
     license = lib.licenses.mit;
   };
-}
\ No newline at end of file
+}