public/nixpkgs
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

python.pkgs.nibabel: fix build and run tests

Browse Source
This commit is contained in:
Robert Schütz 2019-01-17 20:25:35 +01:00 committed by Frederik Rietdijk
parent 567cbef598
commit 2fee113398
1 changed files with 20 additions and 10 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

30
pkgs/development/python-modules/nibabel/default.nix
View File

@ -1,9 +1,12 @@
{ stdenv { lib
, buildPythonPackage , buildPythonPackage
, fetchPypi , fetchPypi
, isPy3k
, numpy , numpy
, nose
, six , six
, bz2file
, nose
, mock
}: }:
buildPythonPackage rec { buildPythonPackage rec {
@ -17,17 +20,24 @@ buildPythonPackage rec {
propagatedBuildInputs = [ propagatedBuildInputs = [
numpy numpy
nose
six six
]; ] ++ lib.optional (!isPy3k) bz2file;
# Failing tests checkInputs = [ nose mock ];
# nibabel.tests.test_minc1.test_old_namespace
# nibabel.gifti.tests.test_parse_gifti_fast.test_parse_dataarrays
# nibabel.gifti.tests.test_giftiio.test_read_deprecated
doCheck = false;
meta = with stdenv.lib; { checkPhase = let
excludeTests = lib.optionals isPy3k [
# https://github.com/nipy/nibabel/issues/691
"nibabel.gifti.tests.test_giftiio.test_read_deprecated"
"nibabel.gifti.tests.test_parse_gifti_fast.test_parse_dataarrays"
"nibabel.tests.test_minc1.test_old_namespace"
];
# TODO: Add --with-doctest once all doctests pass
in ''
nosetests ${lib.concatMapStrings (test: "-e '${test}' ") excludeTests}
'';
meta = with lib; {
homepage = http://nipy.org/nibabel/; homepage = http://nipy.org/nibabel/;
description = "Access a multitude of neuroimaging data formats"; description = "Access a multitude of neuroimaging data formats";
license = licenses.mit; license = licenses.mit;