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cd-hit: fix darwin build (#123026)

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Stéphan Kochen 2021-05-14 23:27:16 +02:00 committed by GitHub
parent 104af4aafa
commit 2adca7ae14
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2 changed files with 9 additions and 3 deletions
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8
pkgs/applications/science/biology/cd-hit/default.nix
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@ -1,4 +1,4 @@
{ lib, stdenv, fetchFromGitHub, makeWrapper, zlib, perl, perlPackages }:
{ lib, stdenv, fetchFromGitHub, makeWrapper, zlib, perl, perlPackages, openmp }:
stdenv.mkDerivation rec {
version = "4.8.1";
@ -14,8 +14,12 @@ stdenv.mkDerivation rec {
propagatedBuildInputs = [ perl perlPackages.TextNSP perlPackages.PerlMagick ];
nativeBuildInputs = [ zlib makeWrapper ];
buildInputs = lib.optional stdenv.cc.isClang openmp;
makeFlags = [ "PREFIX=$(out)/bin" ];
makeFlags = [
"CC=${stdenv.cc.targetPrefix}c++" # remove once https://github.com/weizhongli/cdhit/pull/114 is merged
"PREFIX=$(out)/bin"
];
preInstall = "mkdir -p $out/bin";

4
pkgs/top-level/all-packages.nix
View File

@ -28941,7 +28941,9 @@ in
bppsuite = callPackage ../applications/science/biology/bppsuite { };
cd-hit = callPackage ../applications/science/biology/cd-hit { };
cd-hit = callPackage ../applications/science/biology/cd-hit {
inherit (llvmPackages) openmp;
};
cmtk = callPackage ../applications/science/biology/cmtk { };