htslib: 1.5.0 -> 1.6.0
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@ -1,22 +1,32 @@
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{ stdenv, fetchurl, zlib, bzip2, lzma, curl }:
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{ stdenv, fetchurl, zlib, bzip2, lzma, curl, perl }:
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stdenv.mkDerivation rec {
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stdenv.mkDerivation rec {
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name = "${pname}-${version}";
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name = "${pname}-${version}";
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version = "${major}.0";
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version = "${major}.0";
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pname = "htslib";
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pname = "htslib";
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major = "1.5";
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major = "1.6";
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src = fetchurl {
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src = fetchurl {
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url = "https://github.com/samtools/htslib/releases/download/${major}/htslib-${major}.tar.bz2";
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url = "https://github.com/samtools/htslib/releases/download/${major}/htslib-${major}.tar.bz2";
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sha256 = "0bcjmnbwp2bib1z1bkrp95w9v2syzdwdfqww10mkb1hxlmg52ax0";
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sha256 = "1jsca3hg4rbr6iqq6imkj4lsvgl8g9768bcmny3hlff2w25vx24m";
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};
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};
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propagatedNativeBuildInputs = [ perl ];
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buildInputs = [ zlib bzip2 lzma curl ];
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buildInputs = [ zlib bzip2 lzma curl ];
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configureFlags = "--enable-libcurl"; # optional but strongly recommended
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configureFlags = "--enable-libcurl"; # optional but strongly recommended
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installFlags = "prefix=$(out)";
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installFlags = "prefix=$(out)";
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enableParallelBuilding = true;
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doCheck = true;
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preCheck = ''
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find test -name "*.pl" -exec sed -ie 's|/usr/bin/\(env[[:space:]]\)\{0,1\}perl|${perl}/bin/perl|' {} +
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'';
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meta = with stdenv.lib; {
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meta = with stdenv.lib; {
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description = "A C library for reading/writing high-throughput sequencing data";
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description = "A C library for reading/writing high-throughput sequencing data";
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license = licenses.mit;
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license = licenses.mit;
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