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hisat2: 2.1.0 -> 2.2.1

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Justin Bedo 2020-07-30 16:36:47 +10:00 committed by Alyssa Ross
parent 7a7cab9e62
commit 20c8945467
1 changed files with 8 additions and 12 deletions
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20
pkgs/applications/science/biology/hisat2/default.nix
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@ -1,16 +1,18 @@
{stdenv, fetchurl, unzip, which, python, perl}: {stdenv, fetchFromGitHub, unzip, which, python3, perl}:
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "hisat2"; pname = "hisat2";
version = "2.1.0"; version = "2.2.1";
src = fetchurl { src = fetchFromGitHub {
url = "ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-${version}-source.zip"; owner = "DaehwanKimLab";
sha256 = "10g73sdf6vqqfhhd92hliw7bbpkb8v4pp5012r5l21zws7p7d8l9"; repo = "hisat2";
rev = "v${version}";
sha256 = "0lmzdhzjkvxw7n5w40pbv5fgzd4cz0f9pxczswn3d4cr0k10k754";
}; };
nativeBuildInputs = [ unzip which ]; nativeBuildInputs = [ unzip which ];
buildInputs = [ python perl ]; buildInputs = [ python3 perl ];
installPhase = '' installPhase = ''
mkdir -p $out/bin mkdir -p $out/bin
@ -30,12 +32,6 @@ stdenv.mkDerivation rec {
hisat2_extract_snps_haplotypes_VCF.py \ hisat2_extract_snps_haplotypes_VCF.py \
hisat2_extract_splice_sites.py \ hisat2_extract_splice_sites.py \
hisat2_simulate_reads.py \ hisat2_simulate_reads.py \
hisatgenotype_build_genome.py \
hisatgenotype_extract_reads.py \
hisatgenotype_extract_vars.py \
hisatgenotype_hla_cyp.py \
hisatgenotype_locus.py \
hisatgenotype.py \
$out/bin $out/bin
''; '';