Merge remote-tracking branch 'upstream/master' into hardened-stdenv

pkgs/development/interpreters/octave/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchurl, gfortran, readline, ncurses, perl, flex, texinfo, qhull
 , libsndfile, libX11, graphicsmagick, pcre, pkgconfig, mesa, fltk
-, fftw, fftwSinglePrec, zlib, curl, qrupdate, openblas
+, fftw, fftwSinglePrec, zlib, curl, qrupdate, openblas, arpack, libwebp
 , qt ? null, qscintilla ? null, ghostscript ? null, llvm ? null, hdf5 ? null,glpk ? null
 , suitesparse ? null, gnuplot ? null, jdk ? null, python ? null
 }:
@@ -27,7 +27,7 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ gfortran readline ncurses perl flex texinfo qhull libX11
     graphicsmagick pcre pkgconfig mesa fltk zlib curl openblas libsndfile
-    fftw fftwSinglePrec qrupdate ]
+    fftw fftwSinglePrec qrupdate arpack libwebp ]
     ++ (stdenv.lib.optional (qt != null) qt)
     ++ (stdenv.lib.optional (qscintilla != null) qscintilla)
     ++ (stdenv.lib.optional (ghostscript != null) ghostscript)
@@ -38,9 +38,10 @@ stdenv.mkDerivation rec {
     ++ (stdenv.lib.optional (jdk != null) jdk)
     ++ (stdenv.lib.optional (gnuplot != null) gnuplot)
     ++ (stdenv.lib.optional (python != null) python)
+    ++ (stdenv.lib.optionals (!stdenv.isDarwin) [mesa libX11])
     ;
 
-  doCheck = true;
+  doCheck = !stdenv.isDarwin;
 
   enableParallelBuilding = true;
 
@@ -50,7 +51,9 @@ stdenv.mkDerivation rec {
       "--with-blas=openblas"
       "--with-lapack=openblas"
     ]
-    ++ stdenv.lib.optional openblas.blas64 "--enable-64";
+    ++ stdenv.lib.optional openblas.blas64 "--enable-64"
+    ++ stdenv.lib.optionals stdenv.isDarwin ["--with-x=no"]
+    ;
 
   # Keep a copy of the octave tests detailed results in the output
   # derivation, because someone may care
@@ -67,6 +70,6 @@ stdenv.mkDerivation rec {
     homepage = http://octave.org/;
     license = stdenv.lib.licenses.gpl3Plus;
     maintainers = with stdenv.lib.maintainers; [viric raskin];
-    platforms = with stdenv.lib.platforms; linux;
+    platforms = with stdenv.lib.platforms; linux ++ darwin;
   };
 }

pkgs/development/interpreters/python/2.6/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, zlib ? null, zlibSupport ? true, bzip2, includeModules ? false
+{ stdenv, fetchurl, zlib ? null, zlibSupport ? true, bzip2, less, includeModules ? false
 , sqlite, tcl, tk, xlibsWrapper, openssl, readline, db, ncurses, gdbm, self, callPackage
 , python26Packages }:
 
@@ -53,6 +53,8 @@ let
     [ bzip2 openssl ]++ optionals includeModules [ db openssl ncurses gdbm readline xlibsWrapper tcl tk sqlite ]
     ++ optional zlibSupport zlib;
 
+  propagatedBuildInputs = [ less ];
+
   mkPaths = paths: {
     C_INCLUDE_PATH = makeSearchPathOutput "dev" "include" paths;
     LIBRARY_PATH = makeLibraryPath paths;
@@ -64,8 +66,8 @@ let
     name = "python${if includeModules then "" else "-minimal"}-${version}";
     pythonVersion = majorVersion;
 
-    inherit majorVersion version src patches buildInputs preConfigure
-            configureFlags;
+    inherit majorVersion version src patches buildInputs propagatedBuildInputs
+            preConfigure configureFlags;
 
     inherit (mkPaths buildInputs) C_INCLUDE_PATH LIBRARY_PATH;
 

pkgs/development/interpreters/python/2.7/default.nix

@@ -1,5 +1,6 @@
 { stdenv, fetchurl, self, callPackage, python27Packages
 , bzip2, openssl, gettext
+, less
 
 , includeModules ? false
 
@@ -22,11 +23,11 @@ with stdenv.lib;
 
 let
   majorVersion = "2.7";
-  version = "${majorVersion}.11";
+  version = "${majorVersion}.12";
 
   src = fetchurl {
     url = "http://www.python.org/ftp/python/${version}/Python-${version}.tar.xz";
-    sha256 = "0iiz844riiznsyhhyy962710pz228gmhv8qi3yk4w4jhmx2lqawn";
+    sha256 = "0y7rl603vmwlxm6ilkhc51rx2mfj14ckcz40xxgs0ljnvlhp30yp";
   };
 
   patches =
@@ -108,7 +109,7 @@ let
     ++ optional zlibSupport zlib
     ++ optional stdenv.isDarwin CF;
 
-  propagatedBuildInputs = optional stdenv.isDarwin configd;
+  propagatedBuildInputs = [ less ] ++ optional stdenv.isDarwin configd;
 
   mkPaths = paths: {
     C_INCLUDE_PATH = makeSearchPathOutput "dev" "include" paths;

pkgs/development/interpreters/python/2.7/no-ldconfig.patch

@@ -1,7 +1,8 @@
-diff -ru -x '*~' Python-2.7.11-orig/Lib/ctypes/util.py Python-2.7.11/Lib/ctypes/util.py
---- Python-2.7.11-orig/Lib/ctypes/util.py	2015-12-05 20:46:56.000000000 +0100
-+++ Python-2.7.11/Lib/ctypes/util.py	2016-07-01 14:24:50.714223450 +0200
-@@ -212,31 +212,7 @@
+diff --git a/Lib/ctypes/util.py b/Lib/ctypes/util.py
+index b2c514d..a6eca81 100644
+--- a/Lib/ctypes/util.py
++++ b/Lib/ctypes/util.py
+@@ -207,31 +207,7 @@ elif os.name == "posix":
      else:
  
          def _findSoname_ldconfig(name):
@@ -21,7 +22,7 @@ diff -ru -x '*~' Python-2.7.11-orig/Lib/ctypes/util.py Python-2.7.11/Lib/ctypes/
 -
 -            # XXX assuming GLIBC's ldconfig (with option -p)
 -            expr = r'\s+(lib%s\.[^\s]+)\s+\(%s' % (re.escape(name), abi_type)
--            f = os.popen('/sbin/ldconfig -p 2>/dev/null')
+-            f = os.popen('LC_ALL=C LANG=C /sbin/ldconfig -p 2>/dev/null')
 -            try:
 -                data = f.read()
 -            finally:
@@ -34,10 +35,11 @@ diff -ru -x '*~' Python-2.7.11-orig/Lib/ctypes/util.py Python-2.7.11/Lib/ctypes/
  
          def find_library(name):
              return _findSoname_ldconfig(name) or _get_soname(_findLib_gcc(name))
-diff -ru -x '*~' Python-2.7.11-orig/Lib/uuid.py Python-2.7.11/Lib/uuid.py
---- Python-2.7.11-orig/Lib/uuid.py	2015-12-05 20:47:09.000000000 +0100
-+++ Python-2.7.11/Lib/uuid.py	2016-07-01 14:33:14.360446897 +0200
-@@ -437,57 +437,7 @@
+diff --git a/Lib/uuid.py b/Lib/uuid.py
+index 7432032..9829d18 100644
+--- a/Lib/uuid.py
++++ b/Lib/uuid.py
+@@ -437,57 +437,7 @@ def _netbios_getnode():
          return ((bytes[0]<<40L) + (bytes[1]<<32L) + (bytes[2]<<24L) +
                  (bytes[3]<<16L) + (bytes[4]<<8L) + bytes[5])
  

pkgs/development/interpreters/python/3.3/default.nix

@@ -2,6 +2,7 @@
 , bzip2
 , db
 , gdbm
+, less
 , libX11, xproto
 , lzma
 , ncurses
@@ -27,6 +28,11 @@ let
   buildInputs = filter (p: p != null) [
     zlib bzip2 lzma gdbm sqlite db readline ncurses openssl tcl tk libX11 xproto
   ];
+
+  propagatedBuildInputs = [
+    less
+  ];
+
 in
 stdenv.mkDerivation {
   name = "python3-${version}";
@@ -34,6 +40,7 @@ stdenv.mkDerivation {
   inherit majorVersion version;
 
   inherit buildInputs;
+  inherit propagatedBuildInputs;
 
   src = fetchurl {
     url = "http://www.python.org/ftp/python/${version}/Python-${version}.tar.xz";

pkgs/development/interpreters/python/3.4/default.nix

@@ -2,6 +2,7 @@
 , bzip2
 , db
 , gdbm
+, less
 , libX11, xproto
 , lzma
 , ncurses
@@ -42,6 +43,11 @@ let
     libX11
     xproto
   ] ++ optionals stdenv.isDarwin [ CF configd ];
+
+  propagatedBuildInputs = [
+    less
+  ];
+
 in
 stdenv.mkDerivation {
   name = "python3-${fullVersion}";
@@ -49,6 +55,7 @@ stdenv.mkDerivation {
   inherit majorVersion version;
 
   inherit buildInputs;
+  inherit propagatedBuildInputs;
 
   src = fetchurl {
     url = "http://www.python.org/ftp/python/${version}/Python-${fullVersion}.tar.xz";

pkgs/development/interpreters/python/3.5/default.nix

@@ -2,6 +2,7 @@
 , bzip2
 , db
 , gdbm
+, less
 , libX11, xproto
 , lzma
 , ncurses
@@ -42,6 +43,11 @@ let
     libX11
     xproto
   ] ++ optionals stdenv.isDarwin [ CF configd ];
+
+  propagatedBuildInputs = [
+    less
+  ];
+
 in
 stdenv.mkDerivation {
   name = "python3-${fullVersion}";
@@ -49,6 +55,7 @@ stdenv.mkDerivation {
   inherit majorVersion version;
 
   inherit buildInputs;
+  inherit propagatedBuildInputs;
 
   src = fetchurl {
     url = "http://www.python.org/ftp/python/${version}/Python-${fullVersion}.tar.xz";

pkgs/development/interpreters/python/3.6/default.nix

@@ -0,0 +1,145 @@
+{ stdenv, fetchurl
+, glibc
+, bzip2
+, db
+, gdbm
+, less
+, libX11, xproto
+, lzma
+, ncurses
+, openssl
+, readline
+, sqlite
+, tcl, tk
+, zlib
+, callPackage
+, self
+, python36Packages
+
+, CF, configd
+}:
+
+assert readline != null -> ncurses != null;
+
+with stdenv.lib;
+
+let
+  majorVersion = "3.6";
+  pythonVersion = majorVersion;
+  version = "${majorVersion}.0a3";
+  fullVersion = "${version}";
+
+  buildInputs = filter (p: p != null) [
+    glibc
+    zlib
+    bzip2
+    lzma
+    gdbm
+    sqlite
+    db
+    readline
+    ncurses
+    openssl
+    tcl
+    tk
+    libX11
+    xproto
+  ] ++ optionals stdenv.isDarwin [ CF configd ];
+
+  propagatedBuildInputs = [
+    less
+  ];
+
+in
+stdenv.mkDerivation {
+  name = "python3-${fullVersion}";
+  pythonVersion = majorVersion;
+  inherit majorVersion version;
+
+  inherit buildInputs;
+  inherit propagatedBuildInputs;
+
+  src = fetchurl {
+    url = "https://www.python.org/ftp/python/${majorVersion}.0/Python-${fullVersion}.tar.xz";
+    sha256 = "08c3598bwihibwca9lwxq923sjq9shvgv3wxv4vkga2n6hf63l1c";
+  };
+
+  NIX_LDFLAGS = optionalString stdenv.isLinux "-lgcc_s";
+
+  prePatch = optionalString stdenv.isDarwin ''
+    substituteInPlace configure --replace '`/usr/bin/arch`' '"i386"'
+  '';
+
+  preConfigure = ''
+    for i in /usr /sw /opt /pkg; do	# improve purity
+      substituteInPlace ./setup.py --replace $i /no-such-path
+    done
+    ${optionalString stdenv.isDarwin ''
+       export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -msse2"
+       export MACOSX_DEPLOYMENT_TARGET=10.6
+     ''}
+
+    substituteInPlace ./Lib/plat-generic/regen --replace "/usr/include" ${glibc}/include
+
+    configureFlagsArray=( --enable-shared --with-threads
+                          CPPFLAGS="${concatStringsSep " " (map (p: "-I${getDev p}/include") buildInputs)}"
+                          LDFLAGS="${concatStringsSep " " (map (p: "-L${getLib p}/lib") buildInputs)}"
+                          LIBS="${optionalString (!stdenv.isDarwin) "-lcrypt"} ${optionalString (ncurses != null) "-lncurses"}"
+                        )
+  '';
+
+  setupHook = ./setup-hook.sh;
+
+  postInstall = ''
+    # needed for some packages, especially packages that backport functionality
+    # to 2.x from 3.x
+    for item in $out/lib/python${majorVersion}/test/*; do
+      if [[ "$item" != */test_support.py* ]]; then
+        rm -rf "$item"
+      else
+        echo $item
+      fi
+    done
+    touch $out/lib/python${majorVersion}/test/__init__.py
+
+    ln -s "$out/include/python${majorVersion}m" "$out/include/python${majorVersion}"
+    paxmark E $out/bin/python${majorVersion}
+  '';
+
+  passthru = rec {
+    zlibSupport = zlib != null;
+    sqliteSupport = sqlite != null;
+    dbSupport = db != null;
+    readlineSupport = readline != null;
+    opensslSupport = openssl != null;
+    tkSupport = (tk != null) && (tcl != null) && (libX11 != null) && (xproto != null);
+    libPrefix = "python${majorVersion}";
+    executable = "python${majorVersion}m";
+    buildEnv = callPackage ../wrapper.nix { python = self; };
+    withPackages = import ../with-packages.nix { inherit buildEnv; pythonPackages = python36Packages; };
+    isPy3 = true;
+    isPy35 = true;
+    is_py3k = true;  # deprecated
+    sitePackages = "lib/${libPrefix}/site-packages";
+    interpreter = "${self}/bin/${executable}";
+  };
+
+  enableParallelBuilding = true;
+
+  meta = {
+    homepage = http://python.org;
+    description = "A high-level dynamically-typed programming language";
+    longDescription = ''
+      Python is a remarkably powerful dynamic programming language that
+      is used in a wide variety of application domains. Some of its key
+      distinguishing features include: clear, readable syntax; strong
+      introspection capabilities; intuitive object orientation; natural
+      expression of procedural code; full modularity, supporting
+      hierarchical packages; exception-based error handling; and very
+      high level dynamic data types.
+    '';
+    license = licenses.psfl;
+    platforms = with platforms; linux ++ darwin;
+    maintainers = with maintainers; [ chaoflow domenkozar cstrahan kragniz ];
+  };
+}

pkgs/development/interpreters/python/3.6/setup-hook.sh

@@ -0,0 +1,15 @@
+addPythonPath() {
+    addToSearchPathWithCustomDelimiter : PYTHONPATH $1/lib/python3.6/site-packages
+}
+
+toPythonPath() {
+    local paths="$1"
+    local result=
+    for i in $paths; do
+        p="$i/lib/python3.6/site-packages"
+        result="${result}${result:+:}$p"
+    done
+    echo $result
+}
+
+envHooks+=(addPythonPath)