Merge staging into staging-next

pkgs/development/python-modules/lxml/default.nix

@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "lxml";
-  version = "4.4.2";
+  version = "4.5.0";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "${pname}-${version}";
-    sha256 = "0h4axgcghshcvh1nn39l64xxhylglm3b00hh2rbi1ifvly5mx24f";
+    sha256 = "1i3bhg8xb502afq4ar3kgvvi1hy83l4af2gznfwqvb5b221fr7ak";
   };
 
   # setuptoolsBuildPhase needs dependencies to be passed through nativeBuildInputs

pkgs/development/python-modules/pip/default.nix

@@ -14,14 +14,14 @@
 
 buildPythonPackage rec {
   pname = "pip";
-  version = "19.3.1";
+  version = "20.0.2";
   format = "other";
 
   src = fetchFromGitHub {
     owner = "pypa";
     repo = pname;
     rev = version;
-    sha256 = "079gz0v37ah1l4i5iwyfb0d3mni422yv5ynnxa0wcqpnvkc7sfnw";
+    sha256 = "1jj0qa47d7pqn2r379p434hxk14ij2qgmr83x65w9ib9l8092fhg";
     name = "${pname}-${version}-source";
   };
 

pkgs/development/python-modules/pygit2/default.nix

@@ -1,25 +1,21 @@
-{ stdenv, lib, buildPythonPackage, fetchPypi, fetchpatch, isPyPy, libgit2, six, cffi }:
+{ stdenv, lib, buildPythonPackage, fetchPypi, isPyPy, isPy3k, libgit2, pytestCheckHook, cffi, cacert }:
 
 buildPythonPackage rec {
   pname = "pygit2";
-  version = "0.27.2";
+  version = "1.0.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0d9bgxd6ch5jxz0j5cmx7c4kw933g8pgm2zxf3id1a6w9g2r7hpw";
+    sha256 = "1ql7hkcxrh8yszglrg7d3y0ivh1l56xdc3j34j2fjy4qq06ifv6y";
   };
 
   preConfigure = lib.optionalString stdenv.isDarwin ''
     export DYLD_LIBRARY_PATH="${libgit2}/lib"
   '';
 
-  patches = [ (fetchpatch {
-    name = "dont-require-old-pycparser"; # https://github.com/libgit2/pygit2/issues/819
-    url = https://github.com/libgit2/pygit2/commit/1eaba181577de206d3d43ec7886d0353fc0c9f2a.patch;
-    sha256 = "18x1fpmywhjjr4lvakwmy34zpxfqi8pqqj48g1wcib39lh3s7l4f";
-  }) ];
+  propagatedBuildInputs = [ libgit2 ] ++ lib.optional (!isPyPy) cffi;
 
-  propagatedBuildInputs = [ libgit2 six ] ++ lib.optional (!isPyPy) cffi;
+  checkInputs = [ pytestCheckHook ];
 
   preCheck = ''
     # disable tests that require networking
@@ -28,6 +24,20 @@ buildPythonPackage rec {
     rm test/test_submodule.py
   '';
 
+  # Tests require certificates
+  # https://github.com/NixOS/nixpkgs/pull/72544#issuecomment-582674047
+  SSL_CERT_FILE = "${cacert}/etc/ssl/certs/ca-bundle.crt";
+
+  # setup.py check is broken
+  # https://github.com/libgit2/pygit2/issues/868
+  dontUseSetuptoolsCheck = true;
+
+  # TODO: Test collection is failing
+  # https://github.com/NixOS/nixpkgs/pull/72544#issuecomment-582681068
+  doCheck = false;
+
+  disabled = !isPy3k;
+
   meta = with lib; {
     description = "A set of Python bindings to the libgit2 shared library";
     homepage = https://pypi.python.org/pypi/pygit2;