From 1911d4925e34ca73b34bb5a3a5bbc35f23abd1ab Mon Sep 17 00:00:00 2001 From: Jeffrey David Johnson Date: Fri, 25 Mar 2016 00:30:20 -0700 Subject: [PATCH] work on fixing up bioconductor package --- pkgs/development/r-modules/default.nix | 1563 ++++++++---------------- 1 file changed, 506 insertions(+), 1057 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 7b805d4d58f..7093548a3c4 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -421,6 +421,7 @@ let adimpro = [ pkgs.which pkgs.xorg.xdpyinfo ]; PET = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ]; dti = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ]; + mzR = [ pkgs.netcdf ]; }; packagesRequireingX = [ @@ -697,12 +698,58 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ + "annmap" # depends on broken package RMySQL + "choroplethr" # depends on broken package acs + "acs" # broken build + "spray" # depends on broken package partitions + "simmr" # depends on broken package rjags + "morse" # depends on broken package rjags + "gemtc" # depends on broken package rjags + "EasyMARK" # depends on broken package rjags + "PVAClone" # depends on broken package rjags + "sharx" # depends on broken package rjags + "dcmle" # depends on broken package rjags + "dclone" # depends on broken package rjags + "CNVrd2" # depends on broken package rjags + "bayescount" # depends on broken package rjags + "BANOVA" # depends on broken package rjags + "rjags" # broken build + "proteoQC" # depends on broken package rTANDEM + "PGA" # depends on broken package rTANDEM + "cudatoolkit" # broken build + "MBESS" # depends on broken package OpenMx + "IONiseR" # depends on broken package rhdf5 + "DOQTL" # depends on broken package rhdf5 + "DmelSGI" # depends on broken package rhdf5 + "flowDiv" # depends on broken package ncdfFlow + "ChemmineDrugs" # depends on broken package ChemmineR + "nlopt" # broken build + "stpm" # depends on broken package nloptr + "sjmisc" # depends on broken package nloptr + "rstanarm" # depends on broken package nloptr + "glmmsr" # depends on broken package nloptr + "FDboost" # depends on broken package nloptr + "faraway" # depends on broken package nloptr + "interplot" # depends on broken package nloptr + "VSE" # depends on broken package car + "VARSEDIG" # depends on broken package car + "translateSPSS2R" # depends on broken package car + "tadaatoolbox" # depends on broken package car + "lavaan_shiny" # depends on broken package car + "RcmdrPlugin_GWRM" # depends on broken package car + "TextoMineR" # depends on broken package car + "pcaBootPlot" # depends on broken package car + "ClustGeo" # depends on broken package car + "preproviz" # depends on broken package car + "hsdar" # depends on broken package car + "DecisionCurve" # depends on broken package car + "CONDOP" # depends on broken package car + "EnsemblePenReg" # depends on broken package car + "EnsembleBase" # depends on broken package car + "fullfact" # depends on broken package car + "clusterSEs" # depends on broken package car "ggiraph" # depends on broken package gdtools "rvg" # depends on broken package gdtools - "a4Core" # broken build - "arrayMvout" # broken build - "affyPara" # broken build - "bsubtiliscdf" # broken build "ggpmisc" # depends on broken package polynom "mlt_docreg" # depends on broken package polynom "mlt" # depends on broken package polynom @@ -710,1261 +757,663 @@ let "rtable" # depends on broken package ReporteRs "Mediana" # depends on broken package ReporteRs "ReporteRs" # broken build - "a4Classif" # broken build - "ABAEnrichment" # broken build - "ABarray" # broken build - "abd" # depends on broken package nlopt-2.4.2 - "ACME" # broken build - "Actigraphy" # Build Is Broken - "adabag" # depends on broken package nlopt-2.4.2 + "abd" # depends on broken package nlopt + "adabag" # depends on broken package nlopt "adhoc" # broken build "adSplit" # build is broken - "AER" # depends on broken package nlopt-2.4.2 - "afex" # depends on broken package nlopt-2.4.2 - "AffyCompatible" # broken build - "AGDEX" # broken build - "agRee" # depends on broken package nlopt-2.4.2 - "AIMS" # broken build - "aLFQ" # depends on broken package nlopt-2.4.2 + "AER" # depends on broken package nlopt + "afex" # depends on broken package nlopt + "agRee" # depends on broken package nlopt + "aLFQ" # depends on broken package nlopt "algstat" # broken build - "alr3" # depends on broken package nlopt-2.4.2 - "alr4" # depends on broken package nlopt-2.4.2 - "alsace" # depends on broken nloptr-1.0.4 - "anacor" # depends on broken package nlopt-2.4.2 - "AnalysisPageServer" # broken build - "animation" # broken build - "anim_plots" # broken build - "AnnotationFuncs" # broken build - "AnnotationHubData" # depends on broken package r-AnnotationForge-1.11.19 - "annotationTools" # broken build - "anota" # broken build - "aods3" # depends on broken package nlopt-2.4.2 - "aop" # broken build - "apaTables" # depends on broken package r-car-2.1-0 - "apComplex" # build is broken - "apmsWAPP" # broken build - "apt" # depends on broken package nlopt-2.4.2 - "ArfimaMLM" # depends on broken package nlopt-2.4.2 - "arm" # depends on broken package nlopt-2.4.2 - "ArrayBin" # broken build - "ARRmNormalization" # Build Is Broken - "ART" # depends on broken package ar-car-2.1-0 - "ARTool" # depends on broken package nlopt-2.4.2 + "alr3" # depends on broken package nlopt + "alr4" # depends on broken package nlopt + "alsace" # depends on broken nloptr + "anacor" # depends on broken package nlopt + "aods3" # depends on broken package nlopt + "apaTables" # depends on broken package car + "apt" # depends on broken package nlopt + "ArfimaMLM" # depends on broken package nlopt + "arm" # depends on broken package nlopt + "ART" # depends on broken package car + "ARTool" # depends on broken package nlopt "AssetPricing" # broken build "AtelieR" # broken build - "auRoc" # depends on broken package rjags-4-4 - "AutoModel" # depends on broken package r-car-2.1-0 - "babel" # broken build - "BACA" # depends on broken package Category-2.35.1 - "backShift" # broken build + "auRoc" # depends on broken package rjags + "AutoModel" # depends on broken package car "BAGS" # build is broken - "bamdit" + "bamdit" # broken build "bamsignals" # build is broken - "BANOVA" - "bapred" # depends on broken package r-lme4-1.1-9 - "bartMachine" # depends on broken package nlopt-2.4.2 - "bayescount" - "bayesDem" # depends on broken package nlopt-2.4.2 - "bayesLife" # depends on broken package nlopt-2.4.2 - "BayesMed" - "bayesmix" - "BayesPeak" # broken build - "bayesPop" # depends on broken package nlopt-2.4.2 - "Bayesthresh" # depends on broken package nlopt-2.4.2 - "bayou" # broken build - "baySeq" # broken build - "BaySIC" - "BBCAnalyzer" # depends on broken package r-Rsamtools-1.21.18 - "BBRecapture" # depends on broken package nlopt-2.4.2 - "BCA" # depends on broken package nlopt-2.4.2 - "BcDiag" # broken build - "BCRANK" # broken build - "bcrypt" - "bdynsys" # depends on broken package car-2.1 - "beadarrayFilter" # broken build - "beadarrayMSV" # broken build - "beadarraySNP" # broken build - "BEDMatrix" # broken build - "bedr" # broken build - "BEST" - "betr" # broken build - "bgmm" # depends on broken package nlopt-2.4.2 - "BicARE" # broken build - "BIFIEsurvey" # depends on broken package nlopt-2.4.2 + "BANOVA" # broken build + "bapred" # depends on broken package lme4 + "bartMachine" # depends on broken package nlopt + "bayescount" # broken build + "bayesDem" # depends on broken package nlopt + "bayesLife" # depends on broken package nlopt + "BayesMed" # broken build + "bayesmix" # broken build + "bayesPop" # depends on broken package nlopt + "Bayesthresh" # depends on broken package nlopt + "BaySIC" # broken build + "BBRecapture" # depends on broken package nlopt + "BCA" # depends on broken package nlopt + "bdynsys" # depends on broken package car + "BEST" # broken build + "bgmm" # depends on broken package nlopt + "BIFIEsurvey" # depends on broken package nlopt "bigGP" # build is broken - "BiGGR" # depends on broken package rsbml-2.27.0 - "bigmemoryExtras" # broken build + "BiGGR" # depends on broken package rsbml "bioassayR" # broken build - "biobroom" # depends on broken package r-Biobase-2.30.0 - "BiocCaseStudies" # broken build - "BiocCheck" # broken build - "biocGraph" # broken build - "biocViews" # broken build - "bioDist" # broken build - "BiodiversityR" # depends on broken package nlopt-2.4.2 - "biomartr" # broken build - "BioMVCClass" # broken build - "BioNet" # broken build - "BioSeqClass" # broken build - "biosvd" # broken build - "biotools" # depends on broken package rpanel-1.1-3 - "birta" # broken build + "BiodiversityR" # depends on broken package nlopt + "biotools" # depends on broken package rpanel "birte" # build is broken - "bisectr" # broken build - "BiSEp" # depends on broken package GOSemSim-1.27.3 - "BLCOP" # depends on broken package Rsymphony-0.1-20 - "blima" # broken build - "blmeco" # depends on broken package nlopt-2.4.2 - "blme" # depends on broken package nlopt-2.4.2 - "bmd" # depends on broken package nlopt-2.4.2 - "bmem" # depends on broken package nlopt-2.4.2 - "bmeta" # depends on broken package r-R2jags-0.5-7 - "BMhyd" # broken build - "bnclassify" # broken build - "bootnet" # depends on broken package nlopt-2.4.2 - "boral" - "BradleyTerry2" # depends on broken package nlopt-2.4.2 + "BLCOP" # depends on broken package Rsymphony + "blmeco" # depends on broken package nlopt + "blme" # depends on broken package nlopt + "bmd" # depends on broken package nlopt + "bmem" # depends on broken package nlopt + "bmeta" # depends on broken package R2jags + "bootnet" # depends on broken package nlopt + "boral" # broken build + "BradleyTerry2" # depends on broken package nlopt "BrailleR" # broken build - "BRAIN" # broken build "brainGraph" # build is broken - "BrainStars" # broken build "brms" # build is broken - "BrowserViz" # broken build - "BrowserVizDemo" # broken build - "brr" # broken build "BRugs" # build is broken - "BTSPAS" - "BubbleTree" # depends on broken package r-biovizBase-1.17.2 - "CADFtest" # depends on broken package nlopt-2.4.2 - "cAIC4" # depends on broken package nlopt-2.4.2 - "CAMERA" # depends on broken package mzR-2.3.1 - "cancerclass" # broken build - "canceR" # depends on broken package Category-2.35.1 - "CancerMutationAnalysis" # broken build - "candisc" # depends on broken package nlopt-2.4.2 - "carcass" # depends on broken package nlopt-2.4.2 - "car" # depends on broken package nlopt-2.4.2 - "caret" # depends on broken package nlopt-2.4.2 - "caretEnsemble" # depends on broken package nlopt-2.4.2 - "caRpools" # broken build - "CARrampsOcl" # depends on broken package OpenCL-0.1-3 - "cate" # broken build - "Category" # Build Is Broken - "categoryCompare" # depends on broken package Category-2.35.1 + "BTSPAS" # broken build + "CADFtest" # depends on broken package nlopt + "cAIC4" # depends on broken package nlopt + "candisc" # depends on broken package nlopt + "carcass" # depends on broken package nlopt + "car" # depends on broken package nlopt + "caret" # depends on broken package nlopt + "caretEnsemble" # depends on broken package nlopt + "CARrampsOcl" # depends on broken package OpenCL "Causata" # broken build - "CCpop" # depends on broken package nlopt-2.4.2 - "CCTpack" - "cdcfluview" # broken build - "cellHTS2" # depends on broken package Category-2.35.1 - "cellHTS" # broken build - "CellNOptR" # broken build - "CGHbase" # broken build - "CGHcall" # broken build - "cghMCR" # broken build - "CGHnormaliter" # broken build - "CGHregions" # broken build - "ChainLadder" # depends on broken package nlopt-2.4.2 - "ChemmineOB" # broken build + "CCpop" # depends on broken package nlopt + "CCTpack" # broken build + "ChainLadder" # depends on broken package nlopt "ChemmineR" # Build Is Broken - "ChIPComp" # depends on broken package r-Rsamtools-1.21.18 "chipenrich" # build is broken - "chipPCR" # depends on broken nloptr-1.0.4 - "chroGPS" # broken build - "chromDraw" # broken build - "classGraph" # broken build - "classify" - "ClassifyR" # broken build - "cleaver" # broken build - "climwin" # depends on broken package nlopt-2.4.2 - "clippda" # broken build - "CLME" # depends on broken package nlopt-2.4.2 + "chipPCR" # depends on broken nloptr + "classify" # broken build + "climwin" # depends on broken package nlopt + "CLME" # depends on broken package nlopt "clpAPI" # build is broken - "clusterPower" # depends on broken package nlopt-2.4.2 - "clusterProfiler" # depends on broken package GOSemSim-1.27.3 - "clusterSEs" # depends on broken AER-1.2-4 - "clusterStab" # broken build - "ClustGeo" # depends on broken FactoMineR-1.31.3 - "CMA" # broken build - "CNORdt" # broken build - "CNORfeeder" # broken build - "CNORfuzzy" # depends on broken package nlopt-2.4.2 - "CNORode" # broken build - "CNPBayes" # depends on broken package r-BiocGenerics-0.16.1 - "CNTools" # broken build - "CNVPanelizer" # depends on broken cn.mops-1.15.1 - "CoCiteStats" # Build Is Broken - "codelink" # broken build + "clusterPower" # depends on broken package nlopt + "clusterSEs" # depends on broken AER + "ClustGeo" # depends on broken FactoMineR + "CNORfuzzy" # depends on broken package nlopt + "CNVPanelizer" # depends on broken cn.mops "coefplot" # build is broken - "cogena" # broken build "COHCAP" # build is broken - "colorscience" - "compcodeR" # broken build + "colorscience" # broken build "compendiumdb" # broken build - "CompGO" # depends on broken package Category-2.35.1 - "conformal" # depends on broken package nlopt-2.4.2 - "convert" # broken build - "convevol" # broken build - "copa" # broken build - "CopulaDTA" # depends on broken package r-rstan-2.8.2 - "copynumber" # broken build - "corHMM" # depends on broken package nlopt-2.4.2 - "coRNAi" # depends on broken package Category-2.35.1 - "cosmiq" # depends on broken package mzR-2.3.1 - "CosmoPhotoz" # depends on broken package nlopt-2.4.2 - "covmat" # depends on broken package r-VIM-4.4.1 - "covr" # broken build - "cp4p" # broken build - "cpgen" # depends on broken package r-pedigreemm-0.3-3 + "conformal" # depends on broken package nlopt + "CopulaDTA" # depends on broken package rstan + "corHMM" # depends on broken package nlopt + "CosmoPhotoz" # depends on broken package nlopt + "covmat" # depends on broken package VIM "cplexAPI" # build is broken - "cquad" # depends on broken package car-2.1-1 - "creditr" # broken build - "CRImage" # broken build - "crmn" # broken build - "crmPack" # depends on broken package r-rjags-4-4 - "Crossover" # Build Is Broken - "CrypticIBDcheck" # depends on broken package nlopt-2.4.2 - "CSAR" # broken build - "ctsem" # depends on broken package r-OpenMx-2.2.6 + "cquad" # depends on broken package car + "crmPack" # depends on broken package rjags + "CrypticIBDcheck" # depends on broken package nlopt + "ctsem" # depends on broken package OpenMx "cudaBayesreg" # build is broken - "curvHDR" # broken build - "cycle" # broken build - "cytofkit" # broken build - "D2C" # broken build - "daff" # depends on broken package V8-0.6 + "daff" # depends on broken package V8 "dagbag" # build is broken - "DAMisc" # depends on broken package nlopt-2.4.2 - "DAPAR" # depends on broken package r-imputeLCMD-2.0 - "DASiR" # broken build - "datafsm" # depends on broken package r-caret-6.0-52 - "DBChIP" # broken build + "DAMisc" # depends on broken package nlopt + "datafsm" # depends on broken package caret "dbConnect" # broken build - "DBKGrad" # depends on broken package rpanel-1.1-3 - "dcGOR" # broken build - "DChIPRep" # depends on broken package r-DESeq2-1.10.0 - "dcmle" - "ddCt" # broken build - "DDD" # depends on broken package r-phytools-0.5-00 - "ddgraph" # broken build + "DBKGrad" # depends on broken package rpanel + "dcmle" # broken build "ddst" # broken build - "DECIPHER" # broken build - "DeconRNASeq" # broken build - "Deducer" # depends on broken package nlopt-2.4.2 - "DeducerExtras" # depends on broken package nlopt-2.4.2 - "DeducerPlugInExample" # depends on broken package nlopt-2.4.2 - "DeducerPlugInScaling" # depends on broken package nlopt-2.4.2 - "DeducerSpatial" # depends on broken package nlopt-2.4.2 - "DeducerSurvival" # depends on broken package nlopt-2.4.2 - "DeducerText" # depends on broken package nlopt-2.4.2 - "DEGraph" # depends on broken package RCytoscape-1.19.0 - "DEGreport" # broken build - "derfinderHelper" # broken build + "Deducer" # depends on broken package nlopt + "DeducerExtras" # depends on broken package nlopt + "DeducerPlugInExample" # depends on broken package nlopt + "DeducerPlugInScaling" # depends on broken package nlopt + "DeducerSpatial" # depends on broken package nlopt + "DeducerSurvival" # depends on broken package nlopt + "DeducerText" # depends on broken package nlopt + "DEGraph" # depends on broken package RCytoscape "DescribeDisplay" # build is broken - "DESeq2" # broken build - "DESeq" # broken build - "DESP" # broken build - "destiny" # depends on broken package VIM-4.3.0 - "dexus" # broken build - "DFP" # broken build - "DiagTest3Grp" # depends on broken package nlopt-2.4.2 - "DiffCorr" # broken build - "diffHic" # depends on broken package rhdf5-2.13.1 - "difR" # depends on broken package nlopt-2.4.2 - "diggit" # broken build + "destiny" # depends on broken package VIM + "DiagTest3Grp" # depends on broken package nlopt + "diffHic" # depends on broken package rhdf5 + "difR" # depends on broken package nlopt "DirichletMultinomial" # Build Is Broken - "discSurv" # depends on broken package nlopt-2.4.2 - "DistatisR" # depends on broken package nlopt-2.4.2 - "diveRsity" # depends on broken package nlopt-2.4.2 - "DJL" # depends on broken package r-car-2.1-0 - "DMRcaller" # broken build - "dnet" # broken build - "docxtractr" # broken build + "discSurv" # depends on broken package nlopt + "DistatisR" # depends on broken package nlopt + "diveRsity" # depends on broken package nlopt + "DJL" # depends on broken package car "domainsignatures" # build is broken "doMPI" # build is broken - "DOSE" # depends on broken package GOSemSim-1.27.3 - "dpa" # depends on broken package nlopt-2.4.2 - "dpcR" # depends on broken nloptr-1.0.4 - "drc" # depends on broken package nlopt-2.4.2 - "drfit" # depends on broken package nlopt-2.4.2 - "drsmooth" # depends on broken package nlopt-2.4.2 - "DSS" # broken build - "dupRadar" # depends on broken package r-Rsubread-1.19.5 - "dyebias" # broken build - "dynlm" # depends on broken package nlopt-2.4.2 - "easyanova" # depends on broken package nlopt-2.4.2 - "EasyMARK" - "EBarrays" # broken build - "EBcoexpress" # broken build - "ecd" # depends on broken package r-polynom-1.3-8 - "ecolitk" # broken build - "EDDA" # broken build - "edge" # depends on broken package nlopt-2.4.2 - "edgeR" # broken build - "edgeRun" # broken build - "edmr" # broken build - "eeptools" # depends on broken package nlopt-2.4.2 - "EffectLiteR" # depends on broken package nlopt-2.4.2 - "effects" # depends on broken package nlopt-2.4.2 - "eiR" # depends on broken package ChemmineR-2.21.7 - "eisa" # depends on broken package Category-2.35.1 - "EMA" # depends on broken package nlopt-2.4.2 + "dpa" # depends on broken package nlopt + "dpcR" # depends on broken nloptr + "drc" # depends on broken package nlopt + "drfit" # depends on broken package nlopt + "drsmooth" # depends on broken package nlopt + "dynlm" # depends on broken package nlopt + "easyanova" # depends on broken package nlopt + "EasyMARK" # broken build + "ecd" # depends on broken package polynom + "edge" # depends on broken package nlopt + "eeptools" # depends on broken package nlopt + "EffectLiteR" # depends on broken package nlopt + "effects" # depends on broken package nlopt + "eiR" # depends on broken package ChemmineR + "EMA" # depends on broken package nlopt "embryogrowth" # broken build "emg" # broken build - "empiricalFDR_DESeq2" # broken build - "EnQuireR" # depends on broken package nlopt-2.4.2 - "EnrichedHeatmap" # broken build - "EnrichmentBrowser" # depends on broken package r-EDASeq-2.3.2 - "episplineDensity" # depends on broken package nlopt-2.4.2 - "epoc" # broken build - "epr" # depends on broken package nlopt-2.4.2 - "erccdashboard" # broken build - "erer" # depends on broken package nlopt-2.4.2 - "erma" # depends on broken GenomicFiles-1.5.4 - "erpR" # depends on broken package rpanel-1.1-3 - "ESKNN" # depends on broken package r-caret-6.0-52 - "eulerian" # broken build + "EnQuireR" # depends on broken package nlopt + "EnrichmentBrowser" # depends on broken package EDASeq + "episplineDensity" # depends on broken package nlopt + "epr" # depends on broken package nlopt + "erer" # depends on broken package nlopt + "erma" # depends on broken GenomicFiles + "erpR" # depends on broken package rpanel + "ESKNN" # depends on broken package caret "euroMix" # build is broken - "evobiR" # broken build - "evolqg" # broken build - "ExpressionView" # depends on broken package Category-2.35.1 - "extRemes" # depends on broken package nlopt-2.4.2 - "ez" # depends on broken package nlopt-2.4.2 - "ezec" # depends on broken package drc-2.5 - "fabia" # broken build - "facopy" # depends on broken package nlopt-2.4.2 - "factDesign" # broken build - "FactoMineR" # depends on broken package nlopt-2.4.2 - "Factoshiny" # depends on broken package nlopt-2.4.2 - "faoutlier" # depends on broken package nlopt-2.4.2 - "fastLiquidAssociation" # depends on broken package LiquidAssociation-1.23.0 - "fastR" # depends on broken package nlopt-2.4.2 - "fastseg" # broken build - "fdrDiscreteNull" # broken build - "FDRreg" # depends on broken package nlopt-2.4.2 - "FedData" # broken build + "extRemes" # depends on broken package nlopt + "ez" # depends on broken package nlopt + "ezec" # depends on broken package drc + "facopy" # depends on broken package nlopt + "FactoMineR" # depends on broken package nlopt + "Factoshiny" # depends on broken package nlopt + "faoutlier" # depends on broken package nlopt + "fastLiquidAssociation" # depends on broken package LiquidAssociation + "fastR" # depends on broken package nlopt + "FDRreg" # depends on broken package nlopt "FEM" # build is broken - "FIACH" # broken build - "FindMyFriends" # broken build - "FISHalyseR" # broken build - "fishmethods" # depends on broken package r-lme4-1.1-10 - "flagme" # depends on broken package mzR-2.3.1 + "fishmethods" # depends on broken package lme4 "flipflop" # broken build - "flowBeads" # broken build - "flowBin" # broken build - "flowcatchR" # broken build - "flowCHIC" # broken build - "flowCL" # broken build - "flowClean" # broken build - "flowClust" # broken build - "flowCore" # broken build - "flowDensity" # depends on broken package nlopt-2.4.2 - "flowDiv" # depends on broken package r-flowCore-1.35.11 - "flowFit" # broken build - "flowFP" # broken build - "flowMatch" # broken build - "flowMeans" # broken build - "flowMerge" # broken build + "flowDensity" # depends on broken package nlopt "flowPeaks" # build is broken - "flowQB" # broken build "flowQ" # build is broken - "flowStats" # depends on broken package ncdfFlow-2.15.2 - "flowTrans" # broken build - "flowType" # broken build - "flowUtils" # broken build - "flowViz" # broken build - "flowVS" # depends on broken package ncdfFlow-2.15.2 - "flowWorkspace" # depends on broken package ncdfFlow-2.15.2 - "fmcsR" # depends on broken package ChemmineR-2.21.7 - "focalCall" # broken build - "fPortfolio" # depends on broken package Rsymphony-0.1-20 + "flowStats" # depends on broken package ncdfFlow + "flowVS" # depends on broken package ncdfFlow + "flowWorkspace" # depends on broken package ncdfFlow + "fmcsR" # depends on broken package ChemmineR + "fPortfolio" # depends on broken package Rsymphony "fracprolif" # broken build "FreeSortR" # broken build - "freqweights" # depends on broken package nlopt-2.4.2 + "freqweights" # depends on broken package nlopt "frmqa" # broken build - "FSA" # depends on broken package car-2.1-1 - "fscaret" # depends on broken package nlopt-2.4.2 - "FunctionalNetworks" # Build Is Broken - "funcy" # depends on broken package r-car-2.1-0 - "fxregime" # depends on broken package nlopt-2.4.2 - "gaga" # broken build - "gage" # broken build - "gaggle" # broken build - "gamclass" # depends on broken package nlopt-2.4.2 - "gamlss_demo" # depends on broken package rpanel-1.1-3 - "gamm4" # depends on broken package nlopt-2.4.2 - "gaucho" # broken build + "FSA" # depends on broken package car + "fscaret" # depends on broken package nlopt + "funcy" # depends on broken package car + "fxregime" # depends on broken package nlopt + "gamclass" # depends on broken package nlopt + "gamlss_demo" # depends on broken package rpanel + "gamm4" # depends on broken package nlopt "gaussquad" # broken build - "gCMAP" # depends on broken package Category-2.35.1 - "gCMAPWeb" # depends on broken package Category-2.35.1 - "gcmr" # depends on broken package nlopt-2.4.2 - "GDAtools" # depends on broken package nlopt-2.4.2 + "gcmr" # depends on broken package nlopt + "GDAtools" # depends on broken package nlopt "gdtools" # broken build - "gemtc" - "GeneAnswers" # broken build - "GeneBreak" # depends on broken package r-CGHbase-1.30.0 - "GENE_E" # depends on broken package rhdf5-2.13.1 - "genefu" # broken build - "GeneMeta" # broken build - "GeneNetworkBuilder" # broken build - "geneplotter" # broken build - "geneRecommender" # broken build - "GeneRegionScan" # broken build - "geneRxCluster" # broken build - "GeneSelectMMD" # broken build - "GeneSelector" # broken build + "gemtc" # broken build + "GENE_E" # depends on broken package rhdf5 "GENESIS" # broken build - "geNetClassifier" # broken build - "GenomeGraphs" # broken build - "genomeIntervals" # broken build - "genomes" # broken build - "GenomicTuples" # broken build - "Genominator" # broken build - "genoset" # broken build - "genotypeeval" # depends on broken package r-rtracklayer-1.29.12 - "genridge" # depends on broken package nlopt-2.4.2 - "geojsonio" # depends on broken package V8-0.6 - "GEOmetadb" # broken build - "geomorph" # broken build - "GEOsearch" # broken build - "GERGM" - "gespeR" # depends on broken package Category-2.35.1 - "GEWIST" # depends on broken package nlopt-2.4.2 - "GExMap" # broken build - "gfcanalysis" # broken build + "genridge" # depends on broken package nlopt + "geojsonio" # depends on broken package V8 + "GEWIST" # depends on broken package nlopt "ggtern" # build is broken "ggtree" # broken build - "gimme" # depends on broken package nlopt-2.4.2 - "gitter" # broken build - "GlobalAncova" # broken build - "globaltest" # broken build - "gmatrix" # depends on broken package cudatoolkit-5.5.22 + "gimme" # depends on broken package nlopt + "gmatrix" # depends on broken package cudatoolkit "gMCP" # build is broken "gmum_r" # broken build - "GOexpress" # broken build "GOFunction" # build is broken - "GOGANPA" # depends on broken package WGCNA-1.47 - "googlesheets" # broken build "goProfiles" # build is broken - "GOSemSim" # Build Is Broken "goseq" # build is broken - "Goslate" # depends on broken package r-PythonInR-0.1-2 + "Goslate" # depends on broken package PythonInR "goTools" # build is broken "GPC" # broken build - "gplm" # depends on broken package nlopt-2.4.2 + "gplm" # depends on broken package nlopt "gpuR" # depends on GPU-specific header files - "gputools" # depends on broken package cudatoolkit-5.5.22 - "gQTLBase" # depends on broken package r-GenomicFiles-1.5.8 - "gRain" # broken build - "granova" # depends on broken package nlopt-2.4.2 - "GraphAT" # broken build - "gRapHD" # broken build - "graphicalVAR" # depends on broken package nlopt-2.4.2 - "graphite" # broken build + "gputools" # depends on broken package cudatoolkit + "gQTLBase" # depends on broken package GenomicFiles + "granova" # depends on broken package nlopt + "graphicalVAR" # depends on broken package nlopt "GraphPAC" # broken build - "gRbase" # broken build - "gRc" # broken build - "gridDebug" # broken build "gridGraphics" # build is broken - "gridGraphviz" # broken build - "gRim" # broken build - "GSAgm" # broken build - "GSCA" # depends on broken package rhdf5-2.13.1 - "GSEABase" # broken build - "GSEAlm" # broken build - "gsheet" # broken build - "GSRI" # broken build - "GSVA" # broken build - "GUIDE" # depends on broken package rpanel-1.1-3 - "GUIDEseq" # depends on broken package r-BiocGenerics-0.16.1 - "GUIProfiler" # broken build - "Guitar" # depends on broken package r-GenomicAlignments-1.5.18 - "GWAF" # depends on broken package nlopt-2.4.2 + "GSCA" # depends on broken package rhdf5 + "GUIDE" # depends on broken package rpanel + "GWAF" # depends on broken package nlopt "GWASTools" # broken build "h2o" # build is broken "h5" # build is broken - "h5vc" # depends on broken package rhdf5-2.13.1 - "hapFabia" # broken build - "hasseDiagram" # broken build - "hbsae" # depends on broken package nlopt-2.4.2 - "HCsnip" # broken build - "hddplot" # broken build - "HELP" # broken build - "HEM" # broken build - "heplots" # depends on broken package nlopt-2.4.2 - "HiCfeat" # depends on broken package r-GenomeInfoDb-1.5.16 + "h5vc" # depends on broken package rhdf5 + "hbsae" # depends on broken package nlopt + "heplots" # depends on broken package nlopt "HiDimMaxStable" # broken build - "hierGWAS" "HierO" # Build Is Broken - "highriskzone" - "HilbertCurve" # broken build "HilbertVisGUI" # Build Is Broken "HiPLARM" # Build Is Broken - "hisse" # broken build - "HistDAWass" # depends on broken package nlopt-2.4.2 - "HLMdiag" # depends on broken package nlopt-2.4.2 - "HMMcopy" # broken build + "HistDAWass" # depends on broken package nlopt + "HLMdiag" # depends on broken package nlopt "homomorpheR" # broken build - "hopach" # broken build "hpcwld" # broken build - "hpoPlot" # broken build - "HTSanalyzeR" # depends on broken package Category-2.35.1 - "HTSCluster" # broken build - "HTSFilter" # broken build "hwwntest" # broken build - "HybridMTest" # broken build "HydeNet" # broken build - "hyperdraw" # broken build - "hypergraph" # broken build - "hysteresis" # depends on broken package nlopt-2.4.2 - "IATscores" # depends on broken package nlopt-2.4.2 - "ibd" # depends on broken package nlopt-2.4.2 + "hysteresis" # depends on broken package nlopt + "IATscores" # depends on broken package nlopt + "ibd" # depends on broken package nlopt "ibh" # build is broken - "iBMQ" # broken build - "iccbeta" # depends on broken package nlopt-2.4.2 - "iCheck" # depends on broken package r-affy-1.48.0 - "iClick" # depends on broken package rugarch-1.3-6 - "idiogram" # broken build - "IdMappingAnalysis" # broken build - "IdMappingRetrieval" # broken build - "idm" # broken build - "ifaTools" # depends on broken package r-OpenMx-2.2.6 - "imageHTS" # depends on broken package Category-2.35.1 + "iccbeta" # depends on broken package nlopt + "iClick" # depends on broken package rugarch + "ifaTools" # depends on broken package OpenMx "imager" # broken build - "Imetagene" # depends on broken package r-metagene-2.2.0 - "immer" # depends on broken package r-sirt-1.8-9 "immunoClust" # build is broken - "imputeLCMD" # broken build - "in2extRemes" # depends on broken package nlopt-2.4.2 - "inferference" # depends on broken package nlopt-2.4.2 - "influence_ME" # depends on broken package nlopt-2.4.2 - "inSilicoDb" # broken build + "in2extRemes" # depends on broken package nlopt + "inferference" # depends on broken package nlopt + "influence_ME" # depends on broken package nlopt "inSilicoMerging" # build is broken - "INSPEcT" # depends on broken GenomicFeatures-1.21.13 - "IntegratedJM" # broken build - "interactiveDisplay" # depends on broken package Category-2.35.1 - "interplot" # depends on broken arm-1.8-5 - "ioncopy" # broken build - "ionflows" # broken build - "IONiseR" # depends on broken rhdf5-2.13.4 - "iPAC" # broken build - "iptools" - "iRefR" # broken build - "IsingFit" # depends on broken package nlopt-2.4.2 - "isobar" # broken build - "ITEMAN" # depends on broken package r-car-2.1-0 + "INSPEcT" # depends on broken GenomicFeatures + "interplot" # depends on broken arm + "IONiseR" # depends on broken rhdf5 + "IsingFit" # depends on broken package nlopt + "ITEMAN" # depends on broken package car "iteRates" # broken build - "iterativeBMA" # broken build "iterpc" # broken build - "IUPS" - "IVAS" # depends on broken package nlopt-2.4.2 - "ivpack" # depends on broken package nlopt-2.4.2 - "jagsUI" - "JAGUAR" # depends on broken package nlopt-2.4.2 - "jetset" - "jmosaics" # broken build - "joda" # depends on broken package nlopt-2.4.2 + "IUPS" # broken build + "IVAS" # depends on broken package nlopt + "ivpack" # depends on broken package nlopt + "jagsUI" # broken build + "JAGUAR" # depends on broken package nlopt + "joda" # depends on broken package nlopt "jomo" # build is broken - "js" # depends on broken package V8-0.6 - "KCsmart" # broken build - "kebabs" # broken build - "KEGGgraph" # broken build + "js" # depends on broken package V8 "keggorthology" # build is broken - "KEGGprofile" # Build Is Broken - "KEGGREST" # broken build "KoNLP" # broken build - "ktspair" # broken build - "kza" # broken build "kzft" # broken build - "LANDD" # depends on broken package r-GOSemSim-1.27.4 - "LaplaceDeconv" # depends on broken package r-orthopolynom-1.0-5 - "lapmix" # broken build - "lawn" # depends on broken package V8-0.6 + "LaplaceDeconv" # depends on broken package orthopolynom + "lawn" # depends on broken package V8 "ldamatch" # broken build - "ldblock" # depends on broken package r-snpStats-1.19.3 - "leapp" # broken build - "learnstats" # depends on broken package nlopt-2.4.2 - "LedPred" # broken build + "learnstats" # depends on broken package nlopt "lefse" # build is broken - "lessR" # depends on broken package nlopt-2.4.2 + "lessR" # depends on broken package nlopt "lfe" # build is broken - "lgcp" # depends on broken package rpanel-1.1-3 + "lgcp" # depends on broken package rpanel "Libra" # broken build - "LinRegInteractive" # depends on broken package rpanel-1.1-3 + "LinRegInteractive" # depends on broken package rpanel "LiquidAssociation" # build is broken - "lira" + "lira" # broken build "littler" # broken build "lmdme" # build is broken - "lme4" # depends on broken package nlopt-2.4.2 - "LMERConvenienceFunctions" # depends on broken package nlopt-2.4.2 - "lmerTest" # depends on broken package nlopt-2.4.2 - "lmSupport" # depends on broken package nlopt-2.4.2 - "LogisticDx" # depends on broken package nlopt-2.4.2 - "LOGIT" # depends on broken package r-caret-6.0-58 - "LOLA" # broken build - "longpower" # depends on broken package nlopt-2.4.2 - "LOST" # broken build - "lpNet" # broken build + "lme4" # depends on broken package nlopt + "LMERConvenienceFunctions" # depends on broken package nlopt + "lmerTest" # depends on broken package nlopt + "lmSupport" # depends on broken package nlopt + "LogisticDx" # depends on broken package nlopt + "LOGIT" # depends on broken package caret + "longpower" # depends on broken package nlopt "LPTime" # broken build - "maanova" # broken build - "macat" # broken build - "maGUI" # depends on broken package r-affy-1.47.1 - "maigesPack" # broken build - "MAIT" # depends on broken package nlopt-2.4.2 - "MAMA" # broken build - "manta" # broken build + "MAIT" # depends on broken package nlopt "mAPKL" # build is broken - "maPredictDSC" # depends on broken package nlopt-2.4.2 + "maPredictDSC" # depends on broken package nlopt "mar1s" # broken build - "marked" # depends on broken package nlopt-2.4.2 - "markophylo" # depends on broken package r-Biostrings-2.38.2 - "maSigPro" # broken build - "massiR" # broken build + "marked" # depends on broken package nlopt "matchingMarkets" # broken build - "MatrixRider" # depends on broken package DirichletMultinomial-1.11.1 - "MaxPro" # depends on broken package nlopt-2.4.2 - "MazamaSpatialUtils" # broken build - "MBASED" # broken build - "mbest" # depends on broken package nlopt-2.4.2 - "MBmca" # depends on broken nloptr-1.0.4 + "MatrixRider" # depends on broken package DirichletMultinomial + "MaxPro" # depends on broken package nlopt + "mbest" # depends on broken package nlopt + "MBmca" # depends on broken nloptr "mBvs" # build is broken "MCRestimate" # build is broken "mdgsa" # build is broken - "MEAL" # depends on broken package r-Biobase-2.30.0 - "meboot" # depends on broken package nlopt-2.4.2 - "medflex" # depends on broken package r-car-2.1-0 - "mediation" # depends on broken package r-lme4-1.1-8 - "MEDME" # depends on broken package nlopt-2.4.2 - "MEET" # broken build - "MEIGOR" # broken build - "MEMSS" # depends on broken package nlopt-2.4.2 - "MergeMaid" # broken build - "merTools" # depends on broken package r-arm-1.8-6 - "MeSHDbi" # broken build - "meshr" # depends on broken package Category-2.35.1 + "meboot" # depends on broken package nlopt + "medflex" # depends on broken package car + "mediation" # depends on broken package lme4 + "MEDME" # depends on broken package nlopt + "MEMSS" # depends on broken package nlopt + "merTools" # depends on broken package arm "meta4diag" # broken build - "metaArray" # broken build - "Metab" # depends on broken package mzR-2.3.1 - "metabolomics" # broken build - "metabomxtr" # broken build - "metacom" # broken build - "MetaDE" # broken build "metagear" # build is broken - "metagenomeFeatures" # depends on broken package r-Biobase-2.30.0 - "metagenomeSeq" # broken build - "metaheur" # depends on broken package r-preprocomb-0.2.0 - "MetaLandSim" # broken build - "metamisc" + "metaheur" # depends on broken package preprocomb + "metamisc" # broken build "metaMix" # build is broken - "metaMS" # depends on broken package mzR-2.3.1 - "MetaPath" # depends on broken package r-Biobase-2.29.1 - "metaplus" # depends on broken package nlopt-2.4.2 - "metaSEM" # depends on broken package OpenMx-2.2.4 - "metaSeq" # broken build - "Metatron" # depends on broken package nlopt-2.4.2 - "metaX" # depends on broken package r-CAMERA-1.25.2 - "MethTargetedNGS" # broken build - "methVisual" # broken build - "methylMnM" # broken build - "Mfuzz" # broken build - "MGFM" # broken build - "mGSZ" # broken build - "miceadds" # depends on broken package nlopt-2.4.2 - "micEconAids" # depends on broken package nlopt-2.4.2 - "micEconCES" # depends on broken package nlopt-2.4.2 - "micEconSNQP" # depends on broken package nlopt-2.4.2 - "MiChip" # broken build - "microRNA" # broken build - "mi" # depends on broken package nlopt-2.4.2 + "metaplus" # depends on broken package nlopt + "metaSEM" # depends on broken package OpenMx + "Metatron" # depends on broken package nlopt + "metaX" # depends on broken package CAMERA + "miceadds" # depends on broken package nlopt + "micEconAids" # depends on broken package nlopt + "micEconCES" # depends on broken package nlopt + "micEconSNQP" # depends on broken package nlopt + "mi" # depends on broken package nlopt "MigClim" # Build Is Broken - "migui" # depends on broken package nlopt-2.4.2 - "MIMOSA" # broken build - "minimist" # depends on broken package V8-0.6 - "MiPP" # broken build - "MiRaGE" # broken build - "miRcomp" # depends on broken package r-Biobase-2.30.0 + "migui" # depends on broken package nlopt + "minimist" # depends on broken package V8 "mirIntegrator" # build is broken - "miRLAB" # broken build - "miRNAtap" # broken build - "miRtest" # broken build - "missDeaths" - "missMDA" # depends on broken package nlopt-2.4.2 + "missMDA" # depends on broken package nlopt "mitoODE" # build is broken - "mixAK" # depends on broken package nlopt-2.4.2 + "mixAK" # depends on broken package nlopt "MixedPoisson" # broken build "MIXFIM" # build is broken - "mixlm" # depends on broken package nlopt-2.4.2 - "MixMAP" # depends on broken package nlopt-2.4.2 - "MLInterfaces" # broken build - "mlma" # depends on broken package r-lme4-1.1-10 - "mlmRev" # depends on broken package nlopt-2.4.2 - "MLSeq" # depends on broken package nlopt-2.4.2 - "mlVAR" # depends on broken package nlopt-2.4.2 - "MM2S" # broken build - "MM2Sdata" # broken build + "mixlm" # depends on broken package nlopt + "MixMAP" # depends on broken package nlopt + "mlma" # depends on broken package lme4 + "mlmRev" # depends on broken package nlopt + "MLSeq" # depends on broken package nlopt + "mlVAR" # depends on broken package nlopt "MM" # broken build - "mmnet" # broken build - "mogsa" # broken build - "molaR" # depends on broken package r-geomorph-2.1.7-1 "mongolite" # build is broken "monocle" # build is broken - "monogeneaGM" # broken build - "MonoPhy" # depends on broken package r-phytools-0.5-00 - "MoPS" # broken build - "morse" - "mosaic" # depends on broken package nlopt-2.4.2 - "mosaics" # broken build - "motifbreakR" # depends on broken package r-BSgenome-1.37.5 + "morse" # broken build + "mosaic" # depends on broken package nlopt "mpoly" # broken build "mRMRe" # broken build "msa" # broken build - "msarc" # broken build - "MSeasy" # depends on broken package mzR-2.3.1 - "MSeasyTkGUI" # depends on broken package mzR-2.3.1 - "MSGFgui" # depends on broken package MSGFplus-1.3.0 + "MSGFgui" # depends on broken package MSGFplus "MSGFplus" # Build Is Broken - "MSIseq" # broken build - "MSstats" # depends on broken package nlopt-2.4.2 - "msSurv" # broken build - "Mulcom" # broken build - "MultiRR" # depends on broken package nlopt-2.4.2 - "multiscan" # broken build - "muma" # depends on broken package nlopt-2.4.2 - "munsellinterpol" - "muscle" # broken build - "mutoss" # broken build + "MSstats" # depends on broken package nlopt + "MultiRR" # depends on broken package nlopt + "muma" # depends on broken package nlopt + "munsellinterpol" # broken build "mutossGUI" # build is broken - "mvinfluence" # depends on broken package nlopt-2.4.2 - "mvMORPH" # broken build + "mvinfluence" # depends on broken package nlopt "MXM" # broken build - "myTAI" # broken build - "myvariant" # depends on broken package r-VariantAnnotation-1.15.31 - "mzID" # broken build - "mzR" # build is broken "NanoStringDiff" # broken build - "NanoStringNorm" # depends on broken package r-vsn-3.38.0 "NanoStringQCPro" # build is broken - "NAPPA" # depends on broken package r-vsn-3.38.0 - "NarrowPeaks" # broken build - "nCal" # depends on broken package nlopt-2.4.2 + "nCal" # depends on broken package nlopt "ncdfFlow" # build is broken - "NCIgraph" # depends on broken package RCytoscape-1.19.0 - "ndtv" # broken build - "nem" # broken build + "NCIgraph" # depends on broken package RCytoscape "netbenchmark" # build is broken - "netClass" # broken build - "nethet" # broken build - "netresponse" # broken build - "NetSAM" # broken build - "nettools" # depends on broken package WGCNA-1.47 - "NGScopy" - "nhanesA" # broken build - "NHPoisson" # depends on broken package nlopt-2.4.2 - "NIPTeR" # depends on broken package r-Rsamtools-1.21.18 - "nloptr" # depends on broken package nlopt-2.4.2 + "NHPoisson" # depends on broken package nlopt + "nloptr" # depends on broken package nlopt "nlsem" # broken build "nlts" # broken build - "NOISeq" # broken build - "nonrandom" # depends on broken package nlopt-2.4.2 + "nonrandom" # depends on broken package nlopt "NORRRM" # build is broken - "npGSEA" # broken build - "npIntFactRep" # depends on broken package nlopt-2.4.2 + "npIntFactRep" # depends on broken package nlopt "NSM3" # broken build - "OCplus" # broken build - "OGSA" # broken build - "OmicCircos" # broken build - "omics" # depends on broken package lme4-1.1-10 - "OmicsMarkeR" # depends on broken package nlopt-2.4.2 - "OncoSimulR" # broken build + "omics" # depends on broken package lme4 + "OmicsMarkeR" # depends on broken package nlopt "OPDOE" # broken build "OpenCL" # build is broken - "opencpu" # broken build - "openCyto" # depends on broken package ncdfFlow-2.15.2 + "openCyto" # depends on broken package ncdfFlow "OpenMx" # build is broken - "openssl" - "OperaMate" # depends on broken package Category-2.35.1 - "oposSOM" # broken build - "optBiomarker" # depends on broken package rpanel-1.1-3 - "ora" # depends on broken package ROracle-1.1-12 - "ordBTL" # depends on broken package nlopt-2.4.2 - "OrderedList" # broken build - "ordPens" # depends on broken package r-lme4-1.1-9 - "orQA" # broken build + "openssl" # broken build + "optBiomarker" # depends on broken package rpanel + "ora" # depends on broken package ROracle + "ordBTL" # depends on broken package nlopt + "ordPens" # depends on broken package lme4 "orthopolynom" # broken build - "OutlierD" # broken build - "OUwie" # depends on broken package nlopt-2.4.2 + "OUwie" # depends on broken package nlopt "oz" # broken build "PAA" # broken build - "pacman" # broken build "PADOG" # build is broken - "paircompviz" # broken build - "PairViz" # broken build - "paleotree" # broken build - "pamm" # depends on broken package nlopt-2.4.2 + "pamm" # depends on broken package nlopt "PANDA" # build is broken - "panelAR" # depends on broken package nlopt-2.4.2 - "PAnnBuilder" # broken build - "papeR" # depends on broken package nlopt-2.4.2 - "PAPi" # broken build - "parboost" # depends on broken package nlopt-2.4.2 - "parglms" # broken build - "parma" # depends on broken package nlopt-2.4.2 + "panelAR" # depends on broken package nlopt + "papeR" # depends on broken package nlopt + "parboost" # depends on broken package nlopt + "parma" # depends on broken package nlopt "partitions" # broken build "pathRender" # build is broken "pathview" # build is broken "PatternClass" # build is broken - "pbdBASE" # depends on broken package pbdSLAP-0.2-0 - "PBD" # broken build - "pbdDEMO" # depends on broken package pbdSLAP-0.2-0 - "pbdDMAT" # depends on broken package pbdSLAP-0.2-0 - "pbdSLAP" # build is broken - "PBImisc" # depends on broken package nlopt-2.4.2 + "PBImisc" # depends on broken package nlopt "PBSddesolve" # build is broken - "PBSmapping" # build is broken - "pcaBootPlot" # depends on broken FactoMineR-1.31.3 - "pcaGoPromoter" # broken build + "pcaBootPlot" # depends on broken FactoMineR "pcaL1" # build is broken - "pcalg" # broken build - "pcaMethods" # broken build - "PCGSE" # broken build - "pcnetmeta" - "pcot2" # broken build - "PCpheno" # depends on broken package Category-2.35.1 - "PCS" # broken build + "pcnetmeta" # broken build "pdmclass" # build is broken "PDQutils" # broken build - "pedigreemm" # depends on broken package nlopt-2.4.2 - "pedometrics" # depends on broken package nlopt-2.4.2 - "PepPrep" # broken build - "pepStat" # broken build - "pequod" # depends on broken package nlopt-2.4.2 - "PerfMeas" # broken build - "pglm" # depends on broken package car-2.1-1 - "PharmacoGx" - "phenoDist" # depends on broken package Category-2.35.1 - "phenoTest" # depends on broken package Category-2.35.1 - "PhenStat" # depends on broken package nlopt-2.4.2 - "phia" # depends on broken package nlopt-2.4.2 - "phreeqc" # broken build - "phylocurve" # depends on broken package nlopt-2.4.2 - "phyloseq" # broken build - "PhySortR" # depends on broken package phytools-0.5-10 - "phytools" # broken build - "piano" # broken build - "piecewiseSEM" # depends on broken package r-lme4-1.1-10 - "pkgDepTools" # broken build - "plateCore" # depends on broken package ncdfFlow-2.15.2 - "plethy" # broken build + "pedigreemm" # depends on broken package nlopt + "pedometrics" # depends on broken package nlopt + "pequod" # depends on broken package nlopt + "pglm" # depends on broken package car + "PhenStat" # depends on broken package nlopt + "phia" # depends on broken package nlopt + "phylocurve" # depends on broken package nlopt + "piecewiseSEM" # depends on broken package lme4 + "plateCore" # depends on broken package ncdfFlow "plfMA" # broken build - "plgem" # broken build - "plm" # depends on broken package car-2.1-1 - "PLPE" # broken build - "plrs" # broken build - "plsRbeta" # depends on broken package nlopt-2.4.2 - "plsRcox" # depends on broken package nlopt-2.4.2 - "plsRglm" # depends on broken package nlopt-2.4.2 + "plm" # depends on broken package car + "plsRbeta" # depends on broken package nlopt + "plsRcox" # depends on broken package nlopt + "plsRglm" # depends on broken package nlopt "pmclust" # build is broken - "pmm" # depends on broken package nlopt-2.4.2 - "polyester" # broken build - "Polyfit" # broken build + "pmm" # depends on broken package nlopt "polynom" # broken build - "pomp" # depends on broken package nlopt-2.4.2 - "poppr" # depends on broken package Biostrings-2.38.2 - "ppiPre" # depends on broken package GOSemSim-1.27.3 - "ppiStats" # depends on broken package Category-2.35.1 - "prada" # broken build - "PREDA" # broken build - "predictionet" # broken build - "predictmeans" # depends on broken package nlopt-2.4.2 - "preprocomb" # depends on broken package r-caret-6.0-58 - "prevalence" - "pRF" # broken build - "prLogistic" # depends on broken package nlopt-2.4.2 - "pRoloc" # depends on broken package nlopt-2.4.2 - "pRolocGUI" # depends on broken package nlopt-2.4.2 - "PROMISE" # broken build - "PROPER" # broken build - "propOverlap" # broken build - "Prostar" # depends on broken package r-imputeLCMD-2.0 - "prot2D" # broken build - "ProteomicsAnnotationHubData" # depends on broken package r-AnnotationHub-2.1.40 - "protiq" # broken build - "provenance" # broken build - "PSAboot" # depends on broken package nlopt-2.4.2 - "PSEA" # broken build - "PSICQUIC" # broken build - "ptw" # depends on broken nloptr-1.0.4 - "PurBayes" - "purge" # depends on broken package r-lme4-1.1-9 - "PVAClone" - "pvca" # depends on broken package nlopt-2.4.2 - "PWMEnrich" # broken build - "PythonInR" + "pomp" # depends on broken package nlopt + "poppr" # depends on broken package Biostrings + "predictmeans" # depends on broken package nlopt + "preprocomb" # depends on broken package caret + "prevalence" # broken build + "prLogistic" # depends on broken package nlopt + "pRoloc" # depends on broken package nlopt + "pRolocGUI" # depends on broken package nlopt + "PSAboot" # depends on broken package nlopt + "ptw" # depends on broken nloptr + "PurBayes" # broken build + "purge" # depends on broken package lme4 + "PVAClone" # broken build + "pvca" # depends on broken package nlopt + "PythonInR" # broken build "qcmetrics" # build is broken - "QFRM" - "qgraph" # depends on broken package nlopt-2.4.2 + "QFRM" # broken build + "qgraph" # depends on broken package nlopt "qtbase" # build is broken - "qtlnet" # depends on broken package nlopt-2.4.2 - "qtpaint" # depends on broken package qtbase-1.0.9 - "qtutils" # depends on broken package qtbase-1.0.9 - "QuACN" # broken build - "QUALIFIER" # depends on broken package ncdfFlow-2.15.2 - "quantification" # depends on broken package nlopt-2.4.2 + "qtlnet" # depends on broken package nlopt + "qtpaint" # depends on broken package qtbase + "qtutils" # depends on broken package qtbase + "QUALIFIER" # depends on broken package ncdfFlow + "quantification" # depends on broken package nlopt "QuartPAC" # broken build - "QuasiSeq" # broken build - "qusage" # broken build - "R2jags" - "R2STATS" # depends on broken package nlopt-2.4.2 - "RADami" # broken build + "R2jags" # broken build + "R2STATS" # depends on broken package nlopt "rain" # broken build "raincpc" # build is broken "rainfreq" # build is broken - "RAM" # broken build - "RamiGO" # depends on broken package RCytoscape-1.19.0 - "randPack" # broken build - "RapidPolygonLookup" # depends on broken package PBSmapping-2.69.76 - "RareVariantVis" # depends on broken VariantAnnotation-1.15.19 - "rasclass" # depends on broken package nlopt-2.4.2 - "rase" # broken build + "RamiGO" # depends on broken package RCytoscape + "RareVariantVis" # depends on broken VariantAnnotation + "rasclass" # depends on broken package nlopt "rationalfun" # broken build - "RbcBook1" # broken build - "RBerkeley" - "RBGL" # broken build - "RBioinf" # broken build - "RbioRXN" # depends on broken package ChemmineR-2.21.7 + "RBerkeley" # broken build + "RbioRXN" # depends on broken package ChemmineR "Rblpapi" # broken build - "rbsurv" # broken build - "rbundler" # broken build - "rcellminer" # broken build - "rCGH" # depends on broken package r-affy-1.47.1 - "Rchemcpp" # depends on broken package ChemmineR-2.21.7 - "rchess" # depends on broken package r-V8-0.9 - "Rchoice" # depends on broken package car-2.1 - "RchyOptimyx" # broken build - "Rcmdr" # depends on broken package nlopt-2.4.2 - "RcmdrMisc" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_BCA" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_coin" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_depthTools" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_DoE" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_doex" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_EACSPIR" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_EBM" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_EcoVirtual" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_epack" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_Export" # depends on broken package r-Rcmdr-2.2-3 - "RcmdrPlugin_EZR" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_FactoMineR" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_HH" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_IPSUR" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_KMggplot2" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_lfstat" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_MA" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_mosaic" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_MPAStats" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_NMBU" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_orloca" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_plotByGroup" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_pointG" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_qual" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_RMTCJags" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_ROC" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_sampling" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_SCDA" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_seeg" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_SLC" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_SM" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_sos" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_steepness" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_survival" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_TeachingDemos" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_temis" # depends on broken package nlopt-2.4.2 - "RcmdrPlugin_UCA" # depends on broken package nlopt-2.4.2 - "Rcpi" # depends on broken package ChemmineR-2.21.7 + "Rchemcpp" # depends on broken package ChemmineR + "rchess" # depends on broken package V8 + "Rchoice" # depends on broken package car + "Rcmdr" # depends on broken package nlopt + "RcmdrMisc" # depends on broken package nlopt + "RcmdrPlugin_BCA" # depends on broken package nlopt + "RcmdrPlugin_coin" # depends on broken package nlopt + "RcmdrPlugin_depthTools" # depends on broken package nlopt + "RcmdrPlugin_DoE" # depends on broken package nlopt + "RcmdrPlugin_doex" # depends on broken package nlopt + "RcmdrPlugin_EACSPIR" # depends on broken package nlopt + "RcmdrPlugin_EBM" # depends on broken package nlopt + "RcmdrPlugin_EcoVirtual" # depends on broken package nlopt + "RcmdrPlugin_epack" # depends on broken package nlopt + "RcmdrPlugin_Export" # depends on broken package Rcmdr + "RcmdrPlugin_EZR" # depends on broken package nlopt + "RcmdrPlugin_FactoMineR" # depends on broken package nlopt + "RcmdrPlugin_HH" # depends on broken package nlopt + "RcmdrPlugin_IPSUR" # depends on broken package nlopt + "RcmdrPlugin_KMggplot2" # depends on broken package nlopt + "RcmdrPlugin_lfstat" # depends on broken package nlopt + "RcmdrPlugin_MA" # depends on broken package nlopt + "RcmdrPlugin_mosaic" # depends on broken package nlopt + "RcmdrPlugin_MPAStats" # depends on broken package nlopt + "RcmdrPlugin_NMBU" # depends on broken package nlopt + "RcmdrPlugin_orloca" # depends on broken package nlopt + "RcmdrPlugin_plotByGroup" # depends on broken package nlopt + "RcmdrPlugin_pointG" # depends on broken package nlopt + "RcmdrPlugin_qual" # depends on broken package nlopt + "RcmdrPlugin_RMTCJags" # depends on broken package nlopt + "RcmdrPlugin_ROC" # depends on broken package nlopt + "RcmdrPlugin_sampling" # depends on broken package nlopt + "RcmdrPlugin_SCDA" # depends on broken package nlopt + "RcmdrPlugin_seeg" # depends on broken package nlopt + "RcmdrPlugin_SLC" # depends on broken package nlopt + "RcmdrPlugin_SM" # depends on broken package nlopt + "RcmdrPlugin_sos" # depends on broken package nlopt + "RcmdrPlugin_steepness" # depends on broken package nlopt + "RcmdrPlugin_survival" # depends on broken package nlopt + "RcmdrPlugin_TeachingDemos" # depends on broken package nlopt + "RcmdrPlugin_temis" # depends on broken package nlopt + "RcmdrPlugin_UCA" # depends on broken package nlopt + "Rcpi" # depends on broken package ChemmineR "Rcplex" # Build Is Broken "RcppAPT" # Build Is Broken "RcppOctave" # build is broken "RcppRedis" # build is broken "rcrypt" # broken build - "RCy3" # depends on broken package r-graph-1.48.0 - "RCyjs" # broken build "RCytoscape" # Build Is Broken - "RDAVIDWebService" # depends on broken package Category-2.35.1 - "rdd" # depends on broken package nlopt-2.4.2 - "rddtools" # depends on broken package r-AER-1.2-4 + "rdd" # depends on broken package nlopt + "rddtools" # depends on broken package AER "rDEA" # build is broken "RDieHarder" # build is broken - "ReactomePA" # depends on broken package GOSemSim-1.27.3 - "REBayes" # depends on broken package Rmosek-1.2.5.1 - "reb" # broken build - "recluster" # broken build - "referenceIntervals" # depends on broken package nlopt-2.4.2 - "refund" # depends on broken package nlopt-2.4.2 - "refund_shiny" # depends on broken package r-refund-0.1-13 - "regRSM" # broken build - "REndo" # depends on broken package AER-1.2-4 - "repijson" # depends on broken package V8-0.6 - "ReportingTools" # depends on broken package Category-2.35.1 - "rerddap" # broken build - "REST" # depends on broken package nlopt-2.4.2 - "RGalaxy" # broken build - "rgbif" # depends on broken package V8-0.6 - "Rgnuplot" + "REBayes" # depends on broken package Rmosek + "referenceIntervals" # depends on broken package nlopt + "refund" # depends on broken package nlopt + "refund_shiny" # depends on broken package refund + "REndo" # depends on broken package AER + "repijson" # depends on broken package V8 + "REST" # depends on broken package nlopt + "rgbif" # depends on broken package V8 + "Rgnuplot" # broken build "rgp" # build is broken - "rgpui" # depends on broken package rgp-0.4-1 - "rGREAT" # broken build - "RGSEA" # broken build - "rgsepd" # depends on broken package goseq-1.21.1 + "rgpui" # depends on broken package rgp + "rgsepd" # depends on broken package goseq "rhdf5" # build is broken - "RiboProfiling" # depends on broken package r-BiocGenerics-0.16.1 - "riboSeqR" # broken build - "rjade" # depends on broken package V8-0.6 - "rjags" + "rjade" # depends on broken package V8 + "rjags" # broken build "rJPSGCS" # build is broken "rLindo" # build is broken - "RLRsim" # depends on broken package r-lme4-1.1-9 - "Rmagpie" # broken build + "RLRsim" # depends on broken package lme4 "RMallow" # broken build - "RMassBank" # depends on broken package mzR-2.3.1 "rMAT" # build is broken - "rmgarch" # depends on broken package nlopt-2.4.2 - "rminer" # depends on broken package nlopt-2.4.2 - "RmiR" # Build Is Broken + "rmgarch" # depends on broken package nlopt + "rminer" # depends on broken package nlopt "Rmosek" # build is broken "rmumps" # build is broken "RMySQL" # broken build - "RNAinteract" # depends on broken package Category-2.35.1 - "RNAither" # depends on broken package nlopt-2.4.2 - "RnaSeqSampleSize" # Build Is Broken + "RNAither" # depends on broken package nlopt "RnavGraph" # build is broken "rnetcarto" # broken build - "rNOMADS" # broken build - "RobLox" # broken build - "robustlmm" # depends on broken package nlopt-2.4.2 - "rockchalk" # depends on broken package nlopt-2.4.2 - "RockFab" # broken build - "ROI_plugin_symphony" # depends on broken package Rsymphony-0.1-20 - "Roleswitch" # broken build + "robustlmm" # depends on broken package nlopt + "rockchalk" # depends on broken package nlopt + "ROI_plugin_symphony" # depends on broken package Rsymphony "rols" # build is broken - "ROntoTools" # broken build "ROracle" # Build Is Broken "rpanel" # build is broken - "Rphylopars" # broken build "Rpoppler" # broken build - "RPPanalyzer" # broken build - "RpsiXML" # broken build - "rpubchem" # depends on broken package nlopt-2.4.2 + "rpubchem" # depends on broken package nlopt "RQuantLib" # build is broken - "rqubic" # broken build - "rr" # depends on broken package nlopt-2.4.2 - "rRDP" # broken build - "RRreg" # depends on broken package r-lme4-1.1-10 + "rr" # depends on broken package nlopt + "RRreg" # depends on broken package lme4 "RSAP" # build is broken "rsbml" # build is broken "rscala" # build is broken - "RSDA" # depends on broken package nlopt-2.4.2 - "RSeed" # broken build - "Rsomoclu" + "RSDA" # depends on broken package nlopt + "Rsomoclu" # broken build "rstan" # build is broken - "RStoolbox" # depends on broken package r-caret-6.0-52 - "Rsubread" # Build Is Broken + "RStoolbox" # depends on broken package caret "Rsymphony" # build is broken "rTableICC" # broken build "rTANDEM" # build is broken - "RTCA" # broken build - "RTCGA" # depends on broken package r-rvest-0.3.0 - "RTN" # depends on broken package nlopt-2.4.2 - "RTopper" # broken build - "Rtreemix" # broken build - "rTRM" # broken build - "rugarch" # depends on broken package nlopt-2.4.2 + "RTN" # depends on broken package nlopt + "rugarch" # depends on broken package nlopt "rUnemploymentData" # broken build - "RUVnormalize" # Build Is Broken - "RVAideMemoire" # depends on broken package nlopt-2.4.2 - "rvest" # broken build - "RVFam" # depends on broken package nlopt-2.4.2 - "RVideoPoker" # depends on broken package rpanel-1.1-3 + "RVAideMemoire" # depends on broken package nlopt + "RVFam" # depends on broken package nlopt + "RVideoPoker" # depends on broken package rpanel "RWebServices" # broken build - "ryouready" # depends on broken package nlopt-2.4.2 + "ryouready" # depends on broken package nlopt "sadists" # broken build - "safe" # broken build - "SAGx" # broken build - "sampleSelection" # depends on broken package nlopt-2.4.2 - "sangerseqR" # broken build - "sapFinder" # depends on broken package rTANDEM-1.9.0 - "saps" # broken build - "scholar" # depends on broken package r-rvest-0.3.1 - "ScISI" # depends on broken package apComplex-2.35.0 - "scmamp" # broken build - "scsR" # broken build - "sdcMicro" # depends on broken package nlopt-2.4.2 - "sdcMicroGUI" # depends on broken package nlopt-2.4.2 - "SDD" # depends on broken package rpanel-1.1-3 - "seeg" # depends on broken package nlopt-2.4.2 - "sejmRP" # depends on broken package r-rvest-0.3.0 + "sampleSelection" # depends on broken package nlopt + "sapFinder" # depends on broken package rTANDEM + "sdcMicro" # depends on broken package nlopt + "sdcMicroGUI" # depends on broken package nlopt + "SDD" # depends on broken package rpanel + "seeg" # depends on broken package nlopt "Sejong" # broken build - "SELEX" # broken build - "sem" # depends on broken package nlopt-2.4.2 - "semdiag" # depends on broken package nlopt-2.4.2 - "SemDist" # Build Is Broken - "semGOF" # depends on broken package nlopt-2.4.2 - "semPlot" # depends on broken package nlopt-2.4.2 - "SensMixed" # depends on broken package r-lme4-1.1-9 - "SensoMineR" # depends on broken package nlopt-2.4.2 - "seq2pathway" # depends on broken package WGCNA-1.47 + "sem" # depends on broken package nlopt + "semdiag" # depends on broken package nlopt + "semGOF" # depends on broken package nlopt + "semPlot" # depends on broken package nlopt + "SensMixed" # depends on broken package lme4 + "SensoMineR" # depends on broken package nlopt "seqCNA" # build is broken "SeqFeatR" # broken build "SeqGrapheR" # Build Is Broken - "SeqGSEA" # broken build - "seqHMM" # depends on broken package nloptr-1.0.4 - "seqPattern" # broken build + "seqHMM" # depends on broken package nloptr "seqTools" # build is broken - "sequenza" # broken build "SharpeR" # broken build - "sharx" - "shinyTANDEM" # depends on broken package rTANDEM-1.9.0 - "Shrinkage" # depends on broken package r-multtest-2.25.2 - "SIBER" - "SICtools" # depends on broken package r-Biostrings-2.38.2 - "SID" # broken build - "sigaR" # broken build - "SigCheck" # broken build - "SigFuge" # broken build - "sigsquared" # broken build - "SigTree" # broken build - "SIMAT" # depends on broken package mzR-2.3.1 - "SIM" # broken build - "simmr" - "simPop" # depends on broken package r-VIM-4.4.1 - "simr" # depends on broken package r-lme4-1.1-10 - "SimReg" # broken build - "simulatorZ" # broken build - "sirt" # depends on broken package nlopt-2.4.2 - "SISPA" # depends on broken package r-GSVA-1.18.0 + "sharx" # broken build + "shinyTANDEM" # depends on broken package rTANDEM + "SIBER" # broken build + "simmr" # broken build + "simPop" # depends on broken package VIM + "simr" # depends on broken package lme4 "SJava" # broken build - "sjPlot" # depends on broken package nlopt-2.4.2 - "SLGI" # depends on broken package apComplex-2.35.0 + "sjPlot" # depends on broken package nlopt "smacof" # broken build "SNAGEE" # build is broken - "snm" # depends on broken package nlopt-2.4.2 - "SNPhood" # depends on broken package r-BiocGenerics-0.16.1 - "snplist" # broken build - "SOD" # depends on broken package cudatoolkit-5.5.22 + "snm" # depends on broken package nlopt + "SOD" # depends on broken package cudatoolkit "sodium" # broken build - "soilphysics" # depends on broken package rpanel-1.1-3 - "SomatiCA" # broken build + "soilphysics" # depends on broken package rpanel "sortinghat" # broken build - "SoyNAM" # depends on broken package r-lme4-1.1-8 - "SpacePAC" # broken build - "spacom" # depends on broken package nlopt-2.4.2 - "spade" # broken build - "SparseLearner" # depends on broken package r-qgraph-1.3.1 - "spdynmod" # broken build - "specificity" # depends on broken package nlopt-2.4.2 - "specmine" # depends on broken package r-caret-6.0-58 - "SpeCond" # broken build - "SPEM" # broken build - "SPIA" # broken build - "spkTools" # broken build - "splicegear" # broken build - "spliceSites" # broken build - "splm" # depends on broken package car-2.1-1 - "spocc" # depends on broken package V8-0.6 - "spoccutils" # depends on broken spocc-0.3.0 - "spsann" # depends on broken package r-pedometrics-0.6-2 - "SRAdb" # broken build - "srd" # broken build - "ssizeRNA" # broken build - "ssmrob" # depends on broken package nlopt-2.4.2 - "stagePop" # depends on broken package PBSddesolve-1.11.29 - "staRank" # depends on broken package Category-2.35.1 - "StatMethRank" - "Statomica" # broken build - "stepp" # depends on broken package nlopt-2.4.2 - "stepwiseCM" # broken build - "stream" # broken build - "Streamer" # broken build - "streamMOA" # broken build + "SoyNAM" # depends on broken package lme4 + "spacom" # depends on broken package nlopt + "SparseLearner" # depends on broken package qgraph + "specificity" # depends on broken package nlopt + "specmine" # depends on broken package caret + "splm" # depends on broken package car + "spocc" # depends on broken package V8 + "spoccutils" # depends on broken spocc + "spsann" # depends on broken package pedometrics + "ssmrob" # depends on broken package nlopt + "stagePop" # depends on broken package PBSddesolve + "StatMethRank" # broken build + "stepp" # depends on broken package nlopt "stringgaussnet" # build is broken - "structSSI" # broken build - "strum" # broken build - "subSeq" # depends on broken package r-Biobase-2.30.0 - "superbiclust" # broken build - "Surrogate" # depends on broken package nlopt-2.4.2 - "Sushi" # broken build - "svglite" # depends on broken package gdtools-0.0.6 + "Surrogate" # depends on broken package nlopt + "svglite" # depends on broken package gdtools "sybilSBML" # build is broken "synchronicity" # build is broken "synthpop" # build is broken - "systemfit" # depends on broken package nlopt-2.4.2 - "TargetSearch" # depends on broken package mzR-2.3.1 - "TarSeqQC" # depends on broken package r-BiocGenerics-0.16.1 - "TCC" # broken build - "TCGA2STAT" # broken build - "TCGAbiolinks" # depends on broken package r-affy-1.47.1 - "TcGSA" # depends on broken package nlopt-2.4.2 - "TDARACNE" # broken build - "TDMR" # depends on broken package nlopt-2.4.2 - "TED" # broken build - "TextoMineR" # depends on broken package FactoMineR-1.31.4 - "TFBSTools" # depends on broken package DirichletMultinomial-1.11.1 - "tigerstats" # depends on broken package nlopt-2.4.2 - "tigre" # broken build - "timecourse" # broken build - "timeSeq" # broken build - "TIN" # depends on broken package WGCNA-1.47 - "TKF" # broken build - "TLBC" # depends on broken package r-caret-6.0-58 + "systemfit" # depends on broken package nlopt + "TcGSA" # depends on broken package nlopt + "TDMR" # depends on broken package nlopt + "TextoMineR" # depends on broken package FactoMineR + "TFBSTools" # depends on broken package DirichletMultinomial + "tigerstats" # depends on broken package nlopt + "TLBC" # depends on broken package caret "tmle" # broken build - "tnam" # depends on broken package r-lme4-1.1-9 - "tolBasis" # depends on broken package r-polynom-1.3-8 - "TPP" # broken build - "translateSPSS2R" # depends on broken car-2.0-25 - "tRanslatome" # depends on broken package GOSemSim-1.27.3 - "traseR" - "triform" # broken build - "trigger" # broken build - "TriMatch" # depends on broken package nlopt-2.4.2 - "triplex" # broken build - "TRONCO" # broken build - "TSdist" # broken build + "tnam" # depends on broken package lme4 + "tolBasis" # depends on broken package polynom + "translateSPSS2R" # depends on broken car + "TriMatch" # depends on broken package nlopt "TSMySQL" # broken build "tsoutliers" # broken build - "tspair" # broken build - "TSSi" # broken build - "ttScreening" # broken build - "tweeDEseq" # broken build - "twilight" # broken build "UBCRM" # broken build - "umx" # depends on broken package r-OpenMx-2.2.6 - "UNDO" # broken build + "umx" # depends on broken package OpenMx "uniftest" # broken build - "UniProt_ws" # broken build "untb" # broken build - "userfriendlyscience" # depends on broken package nlopt-2.4.2 + "userfriendlyscience" # depends on broken package nlopt "V8" # build is broken - "varComp" # depends on broken package r-lme4-1.1-9 + "varComp" # depends on broken package lme4 "varian" # build is broken - "variancePartition" # depends on broken package lme4-1.1-8 + "variancePartition" # depends on broken package lme4 "VBmix" # broken build - "VegaMC" # broken build - "VIM" # depends on broken package nlopt-2.4.2 - "VIMGUI" # depends on broken package nlopt-2.4.2 - "vmsbase" # depends on broken package PBSmapping-2.69.76 - "vows" # depends on broken package nlopt-2.4.2 + "VIM" # depends on broken package nlopt + "VIMGUI" # depends on broken package nlopt + "vows" # depends on broken package nlopt "webp" # build is broken - "wfe" # depends on broken package nlopt-2.4.2 - "WGCNA" # build is broken - "wikipediatrend" # broken build - "wordbankr" # depends on broken package r-RMySQL-0.10.7 - "XBSeq" # broken build - "xcms" # depends on broken package mzR-2.3.1 - "XDE" # broken build - "x_ent" # broken build - "xergm" # depends on broken package nlopt-2.4.2 + "wfe" # depends on broken package nlopt + "wordbankr" # depends on broken package RMySQL + "xergm" # depends on broken package nlopt "xps" # build is broken - "ZeligChoice" # depends on broken package r-AER-1.2-4 - "Zelig" # depends on broken package r-AER-1.2-4 - "zetadiv" # depends on broken package nlopt-2.4.2 - "zoib" + "ZeligChoice" # depends on broken package AER + "Zelig" # depends on broken package AER + "zetadiv" # depends on broken package nlopt + "zoib" # broken build ]; otherOverrides = old: new: {