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samtools: refactoring

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mimadrid 2016-06-24 15:14:08 +02:00
parent d3da5cbf44
commit 14feec44e4
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1 changed files with 11 additions and 5 deletions
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16
pkgs/applications/science/biology/samtools/default.nix
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@ -1,19 +1,25 @@
{ stdenv, fetchurl, zlib, ncurses }: { stdenv, fetchurl, zlib, htslib, ncurses ? null }:
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
name = "samtools-${version}"; name = "${pname}-${version}";
pname = "samtools";
version = "1.3.1"; version = "1.3.1";
src = fetchurl { src = fetchurl {
url = "https://github.com/samtools/samtools/releases/download/${version}/${name}.tar.bz2"; url = "https://github.com/samtools/${pname}/releases/download/${version}/${name}.tar.bz2";
sha256 = "0znnnxc467jbf1as2dpskrjhfh8mbll760j6w6rdkwlwbqsp8gbc"; sha256 = "0znnnxc467jbf1as2dpskrjhfh8mbll760j6w6rdkwlwbqsp8gbc";
}; };
buildInputs = [ zlib ncurses ]; buildInputs = [ zlib ncurses htslib ];
configureFlags = [ "--with-htslib=${htslib}" ]
++ stdenv.lib.optional (ncurses == null) "--without-curses";
meta = with stdenv.lib; { meta = with stdenv.lib; {
description = "Tools (written in C using htslib) for manipulating next-generation sequencing data"; description = "Tools for manipulating SAM/BAM/CRAM format";
license = licenses.mit; license = licenses.mit;
homepage = http://www.htslib.org/; homepage = http://www.htslib.org/;
platforms = platforms.unix;
maintainers = [ maintainers.mimadrid ];
}; };
} }