Merge remote-tracking branch 'origin/master' into staging

pkgs/development/libraries/accountsservice/Add-nixbld-to-user-blacklist.patch

@@ -1,27 +0,0 @@
-From e069102365a9ff03822667f435e662f938e8d768 Mon Sep 17 00:00:00 2001
-From: Alexander Ried <ried@mytum.de>
-Date: Wed, 1 Jun 2016 12:49:48 +0200
-Subject: [PATCH] Add nixbld* to user blacklist
-
----
- src/user-classify.c | 4 ++++
- 1 file changed, 4 insertions(+)
-
-diff --git a/src/user-classify.c b/src/user-classify.c
-index 69e6809..0e152b6 100644
---- a/src/user-classify.c
-+++ b/src/user-classify.c
-@@ -75,6 +75,10 @@ user_classify_is_blacklisted (const char *username)
-                 return TRUE;
-         }
- 
-+        if (g_str_has_prefix (username, "nixbld")) {
-+                return TRUE;
-+        }
-+
-         return FALSE;
- }
- 
--- 
-2.7.4
-

pkgs/development/libraries/accountsservice/default.nix

@@ -3,11 +3,11 @@
 
 stdenv.mkDerivation rec {
   name = "accountsservice-${version}";
-  version = "0.6.42";
+  version = "0.6.43";
 
   src = fetchurl {
     url = "http://www.freedesktop.org/software/accountsservice/accountsservice-${version}.tar.xz";
-    sha256 = "0zh0kjpdc631qh36plcgpwvnmh9wj8l5cki3aw5r09w6y7198r75";
+    sha256 = "1k6n9079001sgcwlkq0bz6mkn4m8y4dwf6hs1qm85swcld5ajfzd";
   };
 
   buildInputs = [ pkgconfig glib intltool libtool makeWrapper
@@ -26,7 +26,6 @@ stdenv.mkDerivation rec {
 
   patches = [
     ./no-create-dirs.patch
-    ./Add-nixbld-to-user-blacklist.patch
     ./Disable-methods-that-change-files-in-etc.patch
   ];
 

pkgs/development/libraries/c-ares/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "c-ares-1.10.0";
+  name = "c-ares-1.12.0";
 
   src = fetchurl {
     url = "http://c-ares.haxx.se/download/${name}.tar.gz";
-    sha256 = "1nyka87yf2jfd0y6sspll0yxwb8zi7kyvajrdbjmh4axc5s1cw1x";
+    sha256 = "1yv5ygkd813glz8hbagykgp1hlb6450chig061hr7pyw7i0gk4l6";
   };
 
   meta = with stdenv.lib; {

pkgs/development/libraries/capstone/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, bash, cmake }:
+{ stdenv, fetchurl, bash }:
 
 stdenv.mkDerivation rec {
   name    = "capstone-${version}";
@@ -9,7 +9,10 @@ stdenv.mkDerivation rec {
     sha256 = "1whl5c8j6vqvz2j6ay2pyszx0jg8d3x8hq66cvgghmjchvsssvax";
   };
 
-  buildInputs = [ cmake ];
+  configurePhase = '' patchShebangs make.sh '';
+  buildPhase = '' ./make.sh '';
+  installPhase = '' env PREFIX=$out ./make.sh install '';
+
   enableParallelBuilding = true;
 
   meta = {

pkgs/development/libraries/cpp-netlib/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, cmake, boost, openssl }:
+{ stdenv, fetchurl, cmake, boost, openssl, asio }:
 
 stdenv.mkDerivation rec {
   name = "cpp-netlib-${version}";
@@ -11,6 +11,9 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ cmake boost openssl ];
 
+  # This can be removed when updating to 0.13, see https://github.com/cpp-netlib/cpp-netlib/issues/629
+  propagatedBuildInputs = [ asio ];
+
   cmakeFlags = [
     "-DCPP-NETLIB_BUILD_SHARED_LIBS=ON"
   ];

pkgs/development/libraries/gpgme/default.nix

@@ -28,6 +28,9 @@ stdenv.mkDerivation rec {
     "--enable-fixed-path=${gpgStorePath}/bin"
   ];
 
+  NIX_CFLAGS_COMPILE =
+    with stdenv; lib.optional (system == "i686-linux") "-D_FILE_OFFSET_BITS=64";
+
   meta = with stdenv.lib; {
     homepage = "http://www.gnupg.org/related_software/gpgme";
     description = "Library for making GnuPG easier to use";

pkgs/development/libraries/jansson/default.nix

@@ -1,11 +1,11 @@
 {stdenv, fetchurl}:
 
 stdenv.mkDerivation rec {
-  name = "jansson-2.8";
+  name = "jansson-2.9";
 
   src = fetchurl {
     url = "http://www.digip.org/jansson/releases/${name}.tar.gz";
-    sha256 = "0v7v82mv7x44rpcxmrpnmb8hqimx67qwsp2cz9mv3y0f37iykwnf";
+    sha256 = "19fjgfwjfj99rqa3kf96x5rssj88siazggksgrikd6h4r9sd1l0a";
   };
 
   meta = with stdenv.lib; {

pkgs/development/libraries/jasper/default.nix

@@ -1,37 +1,17 @@
-{ stdenv, fetchurl, fetchpatch, unzip, libjpeg, autoreconfHook }:
+{ stdenv, fetchurl, fetchpatch, libjpeg, autoreconfHook }:
 
 stdenv.mkDerivation rec {
-  name = "jasper-1.900.1";
+  name = "jasper-1.900.2";
 
   src = fetchurl {
-    url = "http://www.ece.uvic.ca/~mdadams/jasper/software/${name}.zip";
-    sha256 = "154l7zk7yh3v8l2l6zm5s2alvd2fzkp6c9i18iajfbna5af5m43b";
+    url = "http://www.ece.uvic.ca/~mdadams/jasper/software/${name}.tar.gz";
+    sha256 = "0bkibjhq3js2ldxa2f9pss84lcx4f5d3v0qis3ifi11ciy7a6c9a";
   };
 
   patches = [
-    ./jasper-CVE-2016-1867.diff
     ./jasper-CVE-2014-8137-variant2.diff
     ./jasper-CVE-2014-8137-noabort.diff
-    ./jasper-CVE-2014-8138.diff
-    ./jasper-CVE-2014-8157.diff
-    ./jasper-CVE-2014-8158.diff
-    ./jasper-CVE-2014-9029.diff
-    (fetchpatch { # CVE-2016-2116
-      url = "https://github.com/mdadams/jasper/commit/142245b9bbb33274a7c620aa7a8f85bc00b2d68e.patch";
-      sha256 = "06dkplqfb3swmdfqb9i2m6r13q0ivn538xfvinxz0agandxyc9yr";
-    })
-    (fetchpatch { # CVE-2016-1577
-      url = "https://github.com/mdadams/jasper/commit/74ea22a7a4fe186e0a0124df25e19739b77c4a29.patch";
-      sha256 = "1xgvhfhv8r77z0a07ick2w3217mypnkaqjwzxbk1g1ym8lsy5r13";
-    })
-    (fetchpatch { # CVE-2015-5221
-      url = "https://github.com/mdadams/jasper/commit/df5d2867e8004e51e18b89865bc4aa69229227b3.patch";
-      sha256 = "0qsiymm59dkj843dbi43ijqdyy3rrzf193ndm9ynj3cfhqghi10l";
-    })
-    (fetchpatch { # CVE-2008-3522
-      url = "https://github.com/mdadams/jasper/commit/d678ccd27b8a062e3bfd4c80d8ce2676a8166a27.patch";
-      sha256 = "0dapf8h4s3zijbgd8vmap3blpnc78h7jqm5ydv8j0krrs5dv5672";
-    })
+
     (fetchpatch { # CVE-2016-2089
       url = "https://github.com/mdadams/jasper/commit/aa6d9c2bbae9155f8e1466295373a68fa97291c3.patch";
       sha256 = "1pxnm86zmbq6brfwsm5wx3iv7s92n4xilc52lzp61q266jmlggrf";
@@ -43,7 +23,7 @@ stdenv.mkDerivation rec {
   ];
 
   # newer reconf to recognize a multiout flag
-  nativeBuildInputs = [ unzip autoreconfHook ];
+  nativeBuildInputs = [ autoreconfHook ];
   propagatedBuildInputs = [ libjpeg ];
 
   configureFlags = "--enable-shared";

pkgs/development/libraries/libcaca/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, ncurses, zlib, imlib2, pkgconfig, libX11 }:
+{ stdenv, fetchurl, ncurses, zlib, imlib2, pkgconfig, libX11, libXext }:
 
 stdenv.mkDerivation rec {
   name = "libcaca-0.99.beta19";
@@ -13,7 +13,8 @@ stdenv.mkDerivation rec {
 
   outputs = [ "bin" "dev" "out" "man" ];
 
-  propagatedBuildInputs = [ ncurses zlib imlib2 pkgconfig libX11 ];
+  propagatedBuildInputs = [ ncurses zlib imlib2 pkgconfig libX11 ]
+   ++ stdenv.lib.optional stdenv.isDarwin libXext;
 
   postInstall = ''
     mkdir -p $dev/bin

pkgs/development/libraries/libgee/0.8.nix

@@ -0,0 +1,27 @@
+{ stdenv, fetchurl, pkgconfig, glib }:
+
+let
+  ver_maj = "0.8";
+  ver_min = "6";
+in
+stdenv.mkDerivation rec {
+  name = "libgee-${ver_maj}.${ver_min}";
+
+  src = fetchurl {
+    url = "https://download.gnome.org/sources/libgee/${ver_maj}/${name}.tar.xz";
+    sha256 = "1mp3bfghc8qh2v8h2pfhksda22mgy2d5ygm1jr3bir544nr8i4fg";
+  };
+
+  buildInputs = [ glib ];
+  nativeBuildInputs = [ pkgconfig ];
+
+  doCheck = true;
+
+  meta = with stdenv.lib; {
+    description = "Utility library providing GObject-based interfaces and classes for commonly used data structures";
+    license = licenses.lgpl21Plus;
+    platforms = platforms.linux;
+    homepage = "http://live.gnome.org/Libgee";
+    maintainers = with maintainers; [ sternenseemann ];
+  };
+}

pkgs/development/libraries/libmbim/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, pkgconfig, glib, python, udev, libgudev }:
 
 stdenv.mkDerivation rec {
-  name = "libmbim-1.12.2";
+  name = "libmbim-1.14.0";
 
   src = fetchurl {
-    url = "http://www.freedesktop.org/software/libmbim/${name}.tar.xz";
-    sha256 = "0abv0h9c3kbw4bq1b9270sg189jcjj3x3wa91bj836ynwg9m34wl";
+    url = "https://www.freedesktop.org/software/libmbim/${name}.tar.xz";
+    sha256 = "0nxb4x8l092xckk4dy84cn5qhviif8akzy0miypapjqqbalm53fa";
   };
 
   outputs = [ "out" "dev" "doc" ];

pkgs/development/libraries/libnfnetlink/default.nix

@@ -5,7 +5,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "http://www.netfilter.org/projects/libnfnetlink/files/${name}.tar.bz2";
-    md5 = "98927583d2016a9fb1936fed992e2c5e";
+    sha256 = "06mm2x4b01k3m7wnrxblk9j0mybyr4pfz28ml7944xhjx6fy2w7j";
   };
 
   meta = {

pkgs/development/libraries/libqmi/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, pkgconfig, glib, python }:
 
 stdenv.mkDerivation rec {
-  name = "libqmi-1.12.6";
+  name = "libqmi-1.16.0";
 
   src = fetchurl {
-    url = "http://www.freedesktop.org/software/libqmi/${name}.tar.xz";
-    sha256 = "101ppan2q1h4pyp2zbn9b8sdwy2c7fk9rp91yykxz3afrvzbymq8";
+    url = "https://www.freedesktop.org/software/libqmi/${name}.tar.xz";
+    sha256 = "0amshs06qc8zy8jz3r2yksqhhbamll7f893ll4zlvgr3zm3vpdks";
   };
 
   outputs = [ "out" "dev" "devdoc" ];

pkgs/development/libraries/libunistring/default.nix

@@ -10,7 +10,7 @@ stdenv.mkDerivation rec {
 
   patches = stdenv.lib.optional stdenv.isDarwin [ ./clang.patch ];
 
-  propagatedBuildInputs = [ libiconv ];
+  buildInputs = [ libiconv ];
 
   configureFlags = [
     "--with-libiconv-prefix=${libiconv}"

pkgs/development/libraries/openjpeg/2.1.nix

@@ -1,8 +1,8 @@
 { callPackage, ... } @ args:
 
 callPackage ./generic.nix (args // rec {
-  version = "2.1.1";
+  version = "2.1.2";
   branch = "2.1";
-  revision = "v2.1.1";
-  sha256 = "1hrn10byrlw7hb7hwv2zvff89rxy3bsbn0im5ki4kdk63jw5p601";
+  revision = "v2.1.2";
+  sha256 = "0kdcl9sqjz0vagli4ad6bxq1r8ma086m0prpkm5x3dxp37hpjp8h";
 })

pkgs/development/libraries/pcl/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, cmake, qhull, flann, boost, vtk, eigen, pkgconfig, qt4
-, libusb1, libpcap, libXt, libpng, Cocoa, AGL, cf-private
+, libusb1, libpcap, libXt, libpng, Cocoa, AGL, cf-private, OpenGL
 }:
 
 stdenv.mkDerivation rec {
@@ -18,7 +18,9 @@ stdenv.mkDerivation rec {
                   libpng vtk qt4 libXt ]
     ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa AGL cf-private ];
   cmakeFlags = stdenv.lib.optionals stdenv.isDarwin [
-    "-DCMAKE_OSX_SYSROOT=" "-DCMAKE_OSX_DEPLOYMENT_TARGET=" ];
+    "-DCMAKE_OSX_SYSROOT=" "-DCMAKE_OSX_DEPLOYMENT_TARGET="
+    "-DOPENGL_INCLUDE_DIR=${OpenGL}/Library/Frameworks"
+  ];
 
   preConfigure = stdenv.lib.optionalString stdenv.isDarwin ''
     NIX_CFLAGS_COMPILE=$(echo "$NIX_CFLAGS_COMPILE" | sed "s,[[:space:]]*-F$NIX_STORE/[[:alnum:]]*-CF-osx-[[:digit:].]*/Library/Frameworks,,g")

pkgs/development/libraries/quickder/default.nix

@@ -0,0 +1,38 @@
+{ stdenv, fetchFromGitHub, fetchurl, hexio, python, which, asn2quickder, bash }:
+
+stdenv.mkDerivation rec {
+  pname = "quickder";
+  name = "${pname}-${version}";
+  version = "1.0-RC1";
+
+  src = fetchFromGitHub {
+    sha256 = "05gw5dqkw3l8kwwm0044zpxhcp7sxicx9wxbfyr49c91403p870w";
+    rev = "version-${version}";
+    owner = "vanrein";
+    repo = "quick-der";
+  };
+
+  buildInputs = [ which asn2quickder bash ];
+
+  patchPhase = ''
+    substituteInPlace Makefile \
+      --replace 'lib tool test rfc' 'lib test rfc'
+    substituteInPlace ./rfc/Makefile \
+      --replace 'ASN2QUICKDER_CMD = ' 'ASN2QUICKDER_CMD = ${asn2quickder}/bin/asn2quickder #'
+    '';
+
+  installFlags = "ASN2QUICKDER_DIR=${asn2quickder}/bin ASN2QUICKDER_CMD=${asn2quickder}/bin/asn2quickder";
+  installPhase = ''
+    mkdir -p $out/lib $out/man
+    make DESTDIR=$out PREFIX=/ all
+    make DESTDIR=$out PREFIX=/ install
+    '';
+
+  meta = with stdenv.lib; {
+    description = "Quick (and Easy) DER, a Library for parsing ASN.1";
+    homepage = https://github.com/vanrein/quick-der;
+    license = licenses.bsd2;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ leenaars ];
+  };
+}

pkgs/development/libraries/uri/default.nix

@@ -0,0 +1,36 @@
+{ stdenv, fetchFromGitHub, cmake, doxygen }:
+
+stdenv.mkDerivation {
+  name = "uri-2016-09-04";
+
+  src = fetchFromGitHub {
+    owner = "cpp-netlib";
+    repo = "uri";
+    rev = "8b1eec80621ea7be1db3b28f1621e531cc72855c";
+    sha256 = "0f77y79b11pp31y0qpydki2nnxd6gpycp24fmrapi70fsni2ah0d";
+  };
+
+  buildInputs = [ cmake doxygen ];
+
+  cmakeFlags = [ "-DUri_BUILD_TESTS=OFF" "-DBUILD_SHARED_LIBS=ON" ];
+
+  postBuild = ''
+    make doc
+  '';
+
+  # https://github.com/cpp-netlib/uri/issues/90
+  postInstall = ''
+    mv $out/include $out/include2
+    mv $out/include2/include $out/
+    rmdir $out/include2
+    mkdir -p $out/share/doc
+    mv html $out/share/doc/uri
+  '';
+
+  meta = {
+    description = "C++ URI library";
+    homepage = http://cpp-netlib.org;
+    license = stdenv.lib.licenses.boost;
+    platforms = stdenv.lib.platforms.all;
+  };
+}

pkgs/development/libraries/webkitgtk/2.14.nix

@@ -41,7 +41,7 @@ stdenv.mkDerivation rec {
 
   # XXX: WebKit2 missing include path for gst-plugins-base.
   # Filled: https://bugs.webkit.org/show_bug.cgi?id=148894
-  #NIX_CFLAGS_COMPILE = "-I${gst-plugins-base.dev}/include/gstreamer-1.0";
+  NIX_CFLAGS_COMPILE = "-I${gst-plugins-base.dev}/include/gstreamer-1.0";
 
   nativeBuildInputs = [
     cmake perl python ruby bison gperf sqlite