Merge master into staging

pkgs/development/python-modules/base58/default.nix

@@ -0,0 +1,25 @@
+{ stdenv, fetchFromGitHub, buildPythonPackage, pytest, pyhamcrest }:
+
+buildPythonPackage rec {
+  pname = "base58";
+  version = "1.0.0";
+
+  src = fetchFromGitHub {
+    owner = "keis";
+    repo = "base58";
+    rev = "v${version}";
+    sha256 = "0f8isdpvbgw0sqn9bj7hk47y8akpvdl8sn6rkszla0xb92ywj0f6";
+  };
+
+  buildInputs = [ pytest pyhamcrest ];
+  checkPhase = ''
+    pytest
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Base58 and Base58Check implementation";
+    homepage = https://github.com/keis/base58;
+    license = licenses.mit;
+    maintainers = with maintainers; [ nyanloutre ];
+  };
+}

pkgs/development/python-modules/block-io/default.nix

@@ -0,0 +1,30 @@
+{ stdenv, fetchPypi, fetchpatch, buildPythonPackage, base58, ecdsa, pycryptodome, requests, six }:
+
+buildPythonPackage rec {
+  pname = "block-io";
+  version = "1.1.8";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "15468pvpcp41ly7kjpmikpyi4av57d9zhf5j1v01j78r1xqqk56g";
+  };
+
+  propagatedBuildInputs = [
+    base58
+    ecdsa
+    pycryptodome
+    requests
+    six
+  ];
+
+  # Tests needs a BlockIO API key to run properly
+  # https://github.com/BlockIo/block_io-python/blob/79006bc8974544b70a2d8e9f19c759941d32648e/test.py#L18
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Integrate Bitcoin, Dogecoin and Litecoin in your Python applications using block.io";
+    homepage = https://github.com/BlockIo/block_io-python;
+    license = licenses.mit;
+    maintainers = with maintainers; [ nyanloutre ];
+  };
+}

pkgs/development/python-modules/circus/default.nix

@@ -1,4 +1,4 @@
-{ buildPythonPackage, fetchPypi
+{ stdenv, buildPythonPackage, fetchPypi
 , iowait, psutil, pyzmq, tornado, mock }:
 
 buildPythonPackage rec {
@@ -10,7 +10,22 @@ buildPythonPackage rec {
     sha256 = "d1603cf4c4f620ce6593d3d2a67fad25bf0242183ea24110d8bb1c8079c55d1b";
   };
 
+  postPatch = ''
+    # relax version restrictions to fix build
+    substituteInPlace setup.py \
+      --replace "pyzmq>=13.1.0,<17.0" "pyzmq>13.1.0" \
+      --replace "tornado>=3.0,<5.0" "tornado>=3.0"
+  '';
+
+  checkInputs = [ mock ];
+
   doCheck = false; # weird error
 
-  propagatedBuildInputs = [ iowait psutil pyzmq tornado mock ];
+  propagatedBuildInputs = [ iowait psutil pyzmq tornado ];
+
+  meta = with stdenv.lib; {
+    description = "A process and socket manager";
+    homepage = "https://github.circus.com/circus-tent/circus";
+    license = licenses.asl20;
+  };
 }

pkgs/development/python-modules/dependency-injector/default.nix

@@ -1,18 +1,20 @@
-{ stdenv, buildPythonPackage, fetchPypi, six }:
+{ stdenv, buildPythonPackage, fetchPypi, six, unittest2 }:
 
 buildPythonPackage rec {
   pname = "dependency-injector";
-  version = "3.13.1";
+  version = "3.13.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0bmcgdfjavgxdzkb904q968ig1x44arvpj2m4rpm5nc9vhhgq43q";
+    sha256 = "0kgb40qspibr1x8ksv0whrr7v0jy20dnqzmc591hm2y4kwzl5hdw";
   };
 
-  # TODO: Enable tests after upstream merges https://github.com/ets-labs/python-dependency-injector/pull/204
-  doCheck = false;
-
   propagatedBuildInputs = [ six ];
+  checkInputs = [ unittest2 ];
+
+  checkPhase = ''
+    unit2 discover tests/unit
+  '';
 
   meta = with stdenv.lib; {
     description = "Dependency injection microframework for Python";

pkgs/development/python-modules/gst-python/default.nix

@@ -4,7 +4,7 @@
 
 let
   pname = "gst-python";
-  version = "1.14.0";
+  version = "1.14.2";
   name = "${pname}-${version}";
 in buildPythonPackage rec {
   inherit pname version;
@@ -15,7 +15,7 @@ in buildPythonPackage rec {
       "${meta.homepage}/src/gst-python/${name}.tar.xz"
       "mirror://gentoo/distfiles/${name}.tar.xz"
       ];
-    sha256 = "1rlr6gl4lg97ng4jxh3gb2ldmywm15vwsa72nvggr8qa2l8q3fg0";
+    sha256 = "08nb011acyvlz48fqh8c084k0dlssz9b7wha7zzk797inidbwh6w";
   };
 
   outputs = [ "out" "dev" ];

pkgs/development/python-modules/nilearn/default.nix

@@ -14,7 +14,8 @@ buildPythonPackage rec {
   # disable some failing tests
   checkPhase = ''
     nosetests nilearn/tests \
-    -e test_cache_mixin_with_expand_user -e test_clean_confounds -e test_detrend
+    -e test_cache_mixin_with_expand_user -e test_clean_confounds -e test_detrend \
+    -e test_clean_detrending -e test_high_variance_confounds
   '';
 
   checkInputs = [ nose ];

pkgs/development/python-modules/pysam/default.nix

@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname   = "pysam";
-  version = "0.13.0";
+  version = "0.15.1";
 
   # Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is
   # missing some files which cause test failures.
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "pysam-developers";
     repo = "pysam";
     rev = "v${version}";
-    sha256 = "1lwbcl38w1x0gciw5psjp87msmv9zzkgiqikg9b83dqaw2y5az1i";
+    sha256 = "1vj367w6xbn9bpmksm162l1aipf7cj97h1q83y7jcpm33ihwpf7x";
   };
 
   buildInputs = [ bzip2 curl cython lzma zlib ];

pkgs/development/python-modules/python-binance/default.nix

@@ -0,0 +1,25 @@
+{ lib, buildPythonPackage, fetchPypi
+, pytest, requests-mock, tox
+, autobahn, certifi, chardet, cryptography, dateparser, pyopenssl, requests, service-identity, twisted }:
+
+buildPythonPackage rec {
+  version = "0.7.0";
+  pname = "python-binance";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0h8kd88j53w6yfc60fr8a45zi30p09l98vm8yzqym4lcgx76nvps";
+  };
+
+  doCheck = false;  # Tries to test multiple interpreters with tox
+  checkInputs = [ pytest requests-mock tox ];
+
+  propagatedBuildInputs = [ autobahn certifi chardet cryptography dateparser pyopenssl requests service-identity twisted ];
+
+  meta = {
+    description = "Binance Exchange API python implementation for automated trading";
+    homepage = https://github.com/sammchardy/python-binance;
+    license = lib.licenses.mit;
+    maintainers = [ lib.maintainers.bhipple ];
+  };
+}

pkgs/development/python-modules/typeguard/default.nix

@@ -4,6 +4,7 @@
 , stdenv
 , setuptools_scm
 , pytest
+, glibcLocales
 }:
 
 buildPythonPackage rec {
@@ -16,6 +17,9 @@ buildPythonPackage rec {
   };
 
   buildInputs = [ setuptools_scm ];
+  nativeBuildInputs = [ glibcLocales ];
+
+  LC_ALL="en_US.utf-8";
 
   postPatch = ''
     substituteInPlace setup.cfg --replace " --cov" ""