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eggnog-mapper: init at 1.0.3 (#58905)

This commit is contained in:
Luis Pedro Coelho 2019-04-15 08:22:47 +08:00 committed by Wael Nasreddine
parent d492738459
commit 13a1f2c296
2 changed files with 42 additions and 0 deletions
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40
pkgs/applications/science/biology/eggnog-mapper/default.nix Normal file
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@ -0,0 +1,40 @@
{ stdenv, fetchFromGitHub, fetchpatch, makeWrapper, python27Packages, wget, diamond, hmmer }:
python27Packages.buildPythonApplication rec {
pname = "eggnog-mapper";
version = "1.0.3";
src = fetchFromGitHub {
owner = "eggnogdb";
repo = "eggnog-mapper";
rev = "${version}";
sha256 = "1aaaflppy84bhkh2hb5gnzm4xgrz0rz0cgfpadr9w8cva8p0sqdv";
};
patches = (fetchpatch {
url = https://github.com/eggnogdb/eggnog-mapper/pull/125/commits/b7828e4c8c1c453e391aef050f06ff3f84ff9faf.patch;
sha256 = "0nz1a7ybm4j5c7vdm3annnxz9036iam2044hia341a0am9wydmzk";
});
buildInputs = [ makeWrapper ];
propagatedBuildInputs = [ python27Packages.biopython wget diamond hmmer ];
# make emapper find diamond & hmmer
makeWrapperArgs = [
''--prefix PATH ':' "${diamond}/bin"''
''--prefix PATH ':' "${hmmer}/bin"''
];
# Tests rely on some of the databases being available, which is not bundled
# with this package as (1) in total, they represent >100GB of data, and (2)
# the user can download only those that interest them.
doCheck = false;
meta = with stdenv.lib; {
description = "Fast genome-wide functional annotation through orthology assignment";
license = licenses.gpl2;
homepage = https://github.com/eggnogdb/eggnog-mapper/wiki;
maintainers = with maintainers; [ luispedro ];
platforms = platforms.all;
};
}

2
pkgs/top-level/all-packages.nix
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@ -21828,6 +21828,8 @@ in
ecopcr = callPackage ../applications/science/biology/ecopcr { };
eggnog-mapper = callPackage ../applications/science/biology/eggnog-mapper { };
emboss = callPackage ../applications/science/biology/emboss { };
ezminc = callPackage ../applications/science/biology/EZminc { };