From 6a8c9bff8fd41d6a52a27a535f22754287eec025 Mon Sep 17 00:00:00 2001
From: Bruno Bzeznik <Bruno.Bzeznik@imag.fr>
Date: Tue, 26 Mar 2019 16:28:38 +0100
Subject: [PATCH] exonerate: init at 2.4.0
---
.../science/biology/exonerate/default.nix | 25 +++++++++++++++++++
pkgs/top-level/all-packages.nix | 2 ++
2 files changed, 27 insertions(+)
create mode 100644 pkgs/applications/science/biology/exonerate/default.nix
diff --git a/pkgs/applications/science/biology/exonerate/default.nix b/pkgs/applications/science/biology/exonerate/default.nix
new file mode 100644
index 00000000000..1dd6b44692a
--- /dev/null
+++ b/pkgs/applications/science/biology/exonerate/default.nix
@@ -0,0 +1,25 @@
+{ stdenv, fetchurl, glib, pkgconfig }:
+
+stdenv.mkDerivation rec {
+ version = "2.4.0";
+ pname = "exonerate";
+
+ src = fetchurl {
+ url = "http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/${pname}-${version}.tar.gz";
+ sha256 = "0hj0m9xygiqsdxvbg79wq579kbrx1mdrabi2bzqz2zn9qwfjcjgq";
+ };
+
+ doCheck = true;
+
+ buildInputs = [ glib ];
+
+ nativeBuildInputs = [ pkgconfig ];
+
+ meta = with stdenv.lib; {
+ description = "Generic tool for sequence alignment";
+ homepage = https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate;
+ license = licenses.gpl3;
+ maintainers = [ maintainers.bzizou ];
+ platforms = platforms.unix ;
+ };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 33464ab30a4..1757d3100c1 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21642,6 +21642,8 @@ in
ezminc = callPackage ../applications/science/biology/EZminc { };
+ exonerate = callPackage ../applications/science/biology/exonerate { };
+
hisat2 = callPackage ../applications/science/biology/hisat2 { };
htslib = callPackage ../development/libraries/science/biology/htslib { };