From 6a8c9bff8fd41d6a52a27a535f22754287eec025 Mon Sep 17 00:00:00 2001 From: Bruno Bzeznik <Bruno.Bzeznik@imag.fr> Date: Tue, 26 Mar 2019 16:28:38 +0100 Subject: [PATCH] exonerate: init at 2.4.0 --- .../science/biology/exonerate/default.nix | 25 +++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 ++ 2 files changed, 27 insertions(+) create mode 100644 pkgs/applications/science/biology/exonerate/default.nix diff --git a/pkgs/applications/science/biology/exonerate/default.nix b/pkgs/applications/science/biology/exonerate/default.nix new file mode 100644 index 00000000000..1dd6b44692a --- /dev/null +++ b/pkgs/applications/science/biology/exonerate/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchurl, glib, pkgconfig }: + +stdenv.mkDerivation rec { + version = "2.4.0"; + pname = "exonerate"; + + src = fetchurl { + url = "http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/${pname}-${version}.tar.gz"; + sha256 = "0hj0m9xygiqsdxvbg79wq579kbrx1mdrabi2bzqz2zn9qwfjcjgq"; + }; + + doCheck = true; + + buildInputs = [ glib ]; + + nativeBuildInputs = [ pkgconfig ]; + + meta = with stdenv.lib; { + description = "Generic tool for sequence alignment"; + homepage = https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate; + license = licenses.gpl3; + maintainers = [ maintainers.bzizou ]; + platforms = platforms.unix ; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 33464ab30a4..1757d3100c1 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -21642,6 +21642,8 @@ in ezminc = callPackage ../applications/science/biology/EZminc { }; + exonerate = callPackage ../applications/science/biology/exonerate { }; + hisat2 = callPackage ../applications/science/biology/hisat2 { }; htslib = callPackage ../development/libraries/science/biology/htslib { };