Merge staging-next into staging

pkgs/development/python-modules/awkward1/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "awkward1";
-  version = "0.2.31";
+  version = "0.2.33";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9b235ce4164c8472d4f0ac0ad4fe7980968659be9e955c44a922d04f93766e12";
+    sha256 = "bf3de210d0a88fb14a97c296f54ed2d5b686a785bb5fd7a31277f22b8daa9513";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/development/python-modules/gspread/default.nix

@@ -3,6 +3,7 @@
 , fetchPypi
 , requests
 , google_auth
+, google-auth-oauthlib
 }:
 
 buildPythonPackage rec {
@@ -14,14 +15,12 @@ buildPythonPackage rec {
     sha256 = "e04f1a6267b3929fc1600424c5ec83906d439672cafdd61a9d5b916a139f841c";
   };
 
-  propagatedBuildInputs = [ requests ];
+  propagatedBuildInputs = [ requests google_auth google-auth-oauthlib ];
 
   meta = with stdenv.lib; {
     description = "Google Spreadsheets client library";
     homepage = "https://github.com/burnash/gspread";
     license = licenses.mit;
-    # missing multiple google libraries
-    broken = true; # 2020-08-15
   };
 
   # No tests included

pkgs/development/python-modules/pandas/default.nix

@@ -58,6 +58,10 @@ in buildPythonPackage rec {
     xlwt
   ];
 
+  # doesn't work with -Werror,-Wunused-command-line-argument
+  # https://github.com/NixOS/nixpkgs/issues/39687
+  hardeningDisable = optional stdenv.cc.isClang "strictoverflow";
+
   # For OSX, we need to add a dependency on libcxx, which provides
   # `complex.h` and other libraries that pandas depends on to build.
   postPatch = optionalString isDarwin ''

pkgs/development/python-modules/pelican/default.nix

@@ -1,18 +1,20 @@
-{ stdenv, buildPythonPackage, fetchFromGitHub
+{ stdenv, buildPythonPackage, fetchFromGitHub, isPy27
 , glibcLocales, git
 , mock, nose, markdown, lxml, typogrify
 , jinja2, pygments, docutils, pytz, unidecode, six, dateutil, feedgenerator
-, blinker, pillow, beautifulsoup4, markupsafe }:
+, blinker, pillow, beautifulsoup4, markupsafe, pandoc }:
 
 buildPythonPackage rec {
   pname = "pelican";
-  version = "4.2.0";
+  version = "4.5.0";
+
+  disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "getpelican";
     repo = "pelican";
     rev = version;
-    sha256 = "0w9nqdw2jmqc6kqwg4rh6irr5k6j7hk8axg6vgd137rs50v62yv5";
+    sha256 = "0p8p84fcpkr19d54dhxvldd8ijbg334wmrmkr99pnbrdl1gf64qi";
     # Remove unicode file names which leads to different checksums on HFS+
     # vs. other filesystems because of unicode normalisation.
     extraPostFetch = ''
@@ -24,15 +26,15 @@ buildPythonPackage rec {
 
   # Exclude custom locale test, which files were removed above to fix the source checksum
   checkPhase = ''
-    nosetests -sv --exclude=test_custom_locale_generation_works pelican
+    nosetests -s \
+      --exclude=test_custom_locale_generation_works \
+      --exclude=test_log_filter \
+      pelican
   '';
 
   buildInputs = [
     glibcLocales
-    # Note: Pelican has to adapt to a changed CLI of pandoc before enabling this
-    # again. Compare https://github.com/getpelican/pelican/pull/2252.
-    # Version 4.2.0 is incompatible with our current pandoc version.
-    # pandoc
+    pandoc
     git
     mock
     markdown
@@ -46,21 +48,16 @@ buildPythonPackage rec {
 
   checkInputs = [
     nose
+    pandoc
   ];
 
   postPatch= ''
     substituteInPlace pelican/tests/test_pelican.py \
       --replace "'git'" "'${git}/bin/git'"
-
-    # Markdown-3.1 changed footnote separator to colon
-    # https://github.com/getpelican/pelican/issues/2493#issuecomment-491723744
-    sed -i '/test_article_with_footnote/i\
-        @unittest.skip("")' pelican/tests/test_readers.py
   '';
 
   LC_ALL="en_US.UTF-8";
 
-
   # We only want to patch shebangs in /bin, and not those
   # of the project scripts that are created by Pelican.
   # See https://github.com/NixOS/nixpkgs/issues/30116

pkgs/development/python-modules/sabyenc3/default.nix

@@ -0,0 +1,22 @@
+{ lib, fetchPypi, python3Packages }:
+
+python3Packages.buildPythonPackage rec {
+  pname = "sabyenc3";
+  version = "4.0.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0zfj1k4zij8ph8jwkq4d6i6axym8cil16yijxshqla5163d1031z";
+  };
+
+  # tests are not included in pypi distribution
+  doCheck = false;
+
+  meta = {
+    description = "yEnc Decoding for Python 3";
+    homepage = "https://github.com/sabnzbd/sabyenc/";
+    license = lib.licenses.lgpl3;
+    maintainers = [ lib.maintainers.lovek323 ];
+  };
+
+}

pkgs/development/python-modules/test-tube/default.nix

@@ -0,0 +1,46 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, isPy27
+, pytestCheckHook
+, future
+, imageio
+, numpy
+, pandas
+, pytorch
+, tensorflow-tensorboard
+}:
+
+buildPythonPackage rec {
+  pname = "test-tube";
+  version = "0.7.5";
+
+  disabled = isPy27;
+
+  src = fetchFromGitHub {
+    owner = "williamFalcon";
+    repo = pname;
+    rev = version;
+    sha256 = "0zpvlp1ybp2dhgap8jsalpfdyg8ycjhlfi3xrdf5dqffqvh2yhp2";
+  };
+
+  checkInputs = [
+    pytestCheckHook
+  ];
+
+  propagatedBuildInputs = [
+    future
+    imageio
+    numpy
+    pandas
+    pytorch
+    tensorflow-tensorboard
+  ];
+
+  meta = with lib; {
+    homepage = "https://github.com/williamFalcon/test-tube";
+    description = "Framework-agnostic library to track and parallelize hyperparameter search in machine learning experiments";
+    license = licenses.mit;
+    maintainers = [ maintainers.tbenst ];
+  };
+}

pkgs/development/python-modules/userpath/default.nix

@@ -0,0 +1,30 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, click
+, distro
+}:
+
+buildPythonPackage rec {
+  pname = "userpath";
+  version = "1.4.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256="0mfjmvx286z1dmnrc7bm65x8gj8qrmkcyagl0vf5ywfq0bm48591";
+  };
+
+  propagatedBuildInputs = [ click distro ];
+
+  # test suite is difficult to emulate in sandbox due to shell manipulation
+  doCheck = false;
+
+  pythonImportsCheck = [ "click" "userpath" ];
+
+  meta = with lib; {
+    description = "Cross-platform tool for adding locations to the user PATH";
+    homepage = "https://github.com/ofek/userpath";
+    license = [ licenses.asl20 licenses.mit ];
+    maintainers = with maintainers; [ yevhenshymotiuk ];
+  };
+}