public/nixpkgs
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Merge pull request #5727 from michelk/rPackages

Browse Source 
rPackages: overall update
This commit is contained in:
Peter Simons 2015-01-22 11:38:38 +01:00
commit 0e214778de
2 changed files with 994 additions and 910 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1868
pkgs/development/r-modules/cran-packages.nix
View File

File diff suppressed because it is too large Load Diff

34
pkgs/development/r-modules/default.nix
View File

@ -221,7 +221,7 @@ let
libamtrack = [ pkgs.gsl ]; libamtrack = [ pkgs.gsl ];
mixcat = [ pkgs.gsl ]; mixcat = [ pkgs.gsl ];
outbreaker = [ pkgs.gsl ]; outbreaker = [ pkgs.gsl ];
pcaPA = [ pkgs.gsl ]; #pcaPA = [ pkgs.gsl ];
ridge = [ pkgs.gsl ]; ridge = [ pkgs.gsl ];
simplexreg = [ pkgs.gsl ]; simplexreg = [ pkgs.gsl ];
stsm = [ pkgs.gsl ]; stsm = [ pkgs.gsl ];
@ -283,10 +283,10 @@ let
PopGenome = [ pkgs.zlib ]; PopGenome = [ pkgs.zlib ];
RJaCGH = [ pkgs.zlib ]; RJaCGH = [ pkgs.zlib ];
RcppCNPy = [ pkgs.zlib ]; RcppCNPy = [ pkgs.zlib ];
Rniftilib = [ pkgs.zlib ]; #Rniftilib = [ pkgs.zlib ];
WhopGenome = [ pkgs.zlib ]; #WhopGenome = [ pkgs.zlib ];
devEMF = [ pkgs.zlib ]; #devEMF = [ pkgs.zlib ];
gdsfmt = [ pkgs.zlib ]; #gdsfmt = [ pkgs.zlib ];
rbamtools = [ pkgs.zlib ]; rbamtools = [ pkgs.zlib ];
rmatio = [ pkgs.zlib ]; rmatio = [ pkgs.zlib ];
RVowpalWabbit = [ pkgs.zlib pkgs.boost ]; RVowpalWabbit = [ pkgs.zlib pkgs.boost ];
@ -311,7 +311,7 @@ let
gmatrix = [ pkgs.cudatoolkit ]; gmatrix = [ pkgs.cudatoolkit ];
WideLM = [ pkgs.cudatoolkit ]; WideLM = [ pkgs.cudatoolkit ];
RCurl = [ pkgs.curl ]; RCurl = [ pkgs.curl ];
Rgnuplot = [ pkgs.gnuplot ]; #Rgnuplot = [ pkgs.gnuplot ];
R2SWF = [ pkgs.pkgconfig ]; R2SWF = [ pkgs.pkgconfig ];
RGtk2 = [ pkgs.pkgconfig ]; RGtk2 = [ pkgs.pkgconfig ];
RProtoBuf = [ pkgs.pkgconfig ]; RProtoBuf = [ pkgs.pkgconfig ];
@ -393,7 +393,7 @@ let
"LS2Wstat" "LS2Wstat"
"MAR1" "MAR1"
"MTurkR" "MTurkR"
"MVPARTwrap" #"MVPARTwrap"
"MareyMap" "MareyMap"
"MergeGUI" "MergeGUI"
"Meth27QC" "Meth27QC"
@ -405,8 +405,8 @@ let
"PBSadmb" "PBSadmb"
"PBSmodelling" "PBSmodelling"
"PCPS" "PCPS"
"PKmodelFinder" #"PKmodelFinder"
"PoMoS" #"PoMoS"
"PopGenReport" "PopGenReport"
"PredictABEL" "PredictABEL"
"PrevMap" "PrevMap"
@ -432,7 +432,7 @@ let
"RcmdrPlugin_KMggplot2" "RcmdrPlugin_KMggplot2"
"RcmdrPlugin_MA" "RcmdrPlugin_MA"
"RcmdrPlugin_MPAStats" "RcmdrPlugin_MPAStats"
"RcmdrPlugin_NMBU" #"RcmdrPlugin_NMBU"
"RcmdrPlugin_ROC" "RcmdrPlugin_ROC"
"RcmdrPlugin_SCDA" "RcmdrPlugin_SCDA"
"RcmdrPlugin_SLC" "RcmdrPlugin_SLC"
@ -474,7 +474,7 @@ let
"TestScorer" "TestScorer"
"VIMGUI" "VIMGUI"
"VecStatGraphs3D" "VecStatGraphs3D"
"VisuClust" #"VisuClust"
"WMCapacity" "WMCapacity"
"accrual" "accrual"
"ade4TkGUI" "ade4TkGUI"
@ -644,7 +644,7 @@ let
"rmongodb" # jsonlite.so: undefined symbol: XXX "rmongodb" # jsonlite.so: undefined symbol: XXX
"rnoaa" # jsonlite.so: undefined symbol: XXX "rnoaa" # jsonlite.so: undefined symbol: XXX
"RSiteCatalyst" # jsonlite.so: undefined symbol: XXX "RSiteCatalyst" # jsonlite.so: undefined symbol: XXX
"RSocrata" # jsonlite.so: undefined symbol: XXX #"RSocrata" # jsonlite.so: undefined symbol: XXX
"rsunlight" # jsonlite.so: undefined symbol: XXX "rsunlight" # jsonlite.so: undefined symbol: XXX
"rWBclimate" # jsonlite.so: undefined symbol: XXX "rWBclimate" # jsonlite.so: undefined symbol: XXX
"SGP" # jsonlite.so: undefined symbol: XXX "SGP" # jsonlite.so: undefined symbol: XXX
@ -722,7 +722,7 @@ let
"gRapHD" # requires graph "gRapHD" # requires graph
"msSurv" # requires graph "msSurv" # requires graph
"PairViz" # requires graph "PairViz" # requires graph
"ddepn" # requires graph, and genefilter #"ddepn" # requires graph, and genefilter
"iRefR" # requires graph, and RBGL "iRefR" # requires graph, and RBGL
"pcalg" # requires graph, and RBGL "pcalg" # requires graph, and RBGL
"protiq" # requires graph, and RBGL "protiq" # requires graph, and RBGL
@ -765,7 +765,7 @@ let
"metaMA" # requires limma "metaMA" # requires limma
"plmDE" # requires limma "plmDE" # requires limma
"SQDA" # requires limma "SQDA" # requires limma
"RPPanalyzer" # requires limma, and Biobase #"RPPanalyzer" # requires limma, and Biobase
"PerfMeas" # requires limma, graph, and RBGL "PerfMeas" # requires limma, graph, and RBGL
"rLindo" # requires LINDO API "rLindo" # requires LINDO API
"magma" # requires MAGMA "magma" # requires MAGMA
@ -802,7 +802,7 @@ let
"crmn" # requires pcaMethods, and Biobase "crmn" # requires pcaMethods, and Biobase
"imputeLCMD" # requires pcaMethods, and impute "imputeLCMD" # requires pcaMethods, and impute
"MEET" # requires pcaMethods, and seqLogo "MEET" # requires pcaMethods, and seqLogo
"SigTree" # requires phyloseq #"SigTree" # requires phyloseq
"saps" # requires piano, and survcomp "saps" # requires piano, and survcomp
"smart" # requires PMA "smart" # requires PMA
"surveillance" # requires polyCub "surveillance" # requires polyCub
@ -823,7 +823,7 @@ let
"PKgraph" # requires rggobi "PKgraph" # requires rggobi
"SeqGrapheR" # requires rggobi "SeqGrapheR" # requires rggobi
"branchLars" # requires Rgraphviz "branchLars" # requires Rgraphviz
"gcExplorer" # requires Rgraphviz #"gcExplorer" # requires Rgraphviz
"hasseDiagram" # requires Rgraphviz "hasseDiagram" # requires Rgraphviz
"hpoPlot" # requires Rgraphviz "hpoPlot" # requires Rgraphviz
"strum" # requires Rgraphviz "strum" # requires Rgraphviz
@ -891,7 +891,7 @@ let
"rsig" # requires survcomp "rsig" # requires survcomp
"leapp" # requires sva "leapp" # requires sva
"ttScreening" # requires sva, and limma "ttScreening" # requires sva, and limma
"ENA" # requires WGCNA #"ENA" # requires WGCNA
"GOGANPA" # requires WGCNA "GOGANPA" # requires WGCNA
"nettools" # requires WGCNA "nettools" # requires WGCNA
"rneos" # requires XMLRPC "rneos" # requires XMLRPC