From 0b03f44c2f1ee0d692e00e5ffc064ad38af4a447 Mon Sep 17 00:00:00 2001
From: Bruno Bzeznik <Bruno.Bzeznik@imag.fr>
Date: Fri, 29 Mar 2019 08:58:20 +0100
Subject: [PATCH] migrate: init at 3.7.2

---
 .../science/biology/migrate/default.nix       | 24 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 26 insertions(+)
 create mode 100644 pkgs/applications/science/biology/migrate/default.nix

diff --git a/pkgs/applications/science/biology/migrate/default.nix b/pkgs/applications/science/biology/migrate/default.nix
new file mode 100644
index 00000000000..d80e6e7b30d
--- /dev/null
+++ b/pkgs/applications/science/biology/migrate/default.nix
@@ -0,0 +1,24 @@
+{ gccStdenv, fetchurl, zlib, openmpi }:
+
+gccStdenv.mkDerivation rec {
+  version = "3.7.2";
+  pname = "migrate";
+
+  src = fetchurl {
+    url = "https://peterbeerli.com/migrate-html5/download_version3/${pname}-${version}.src.tar.gz";
+    sha256 = "1p2364ffjc56i82snzvjpy6pkf6wvqwvlvlqxliscx2c303fxs8v";
+  };
+
+  buildInputs = [ zlib openmpi ];
+  setSourceRoot = ''sourceRoot=$(echo */src)'';
+  buildFlags = [ "thread" "mpis" ];
+  preInstall = "mkdir -p $out/man/man1";
+
+  meta = with gccStdenv.lib; {
+    description = "Estimates population size, migration, population splitting parameters using genetic/genomic data";
+    homepage = https://peterbeerli.com/migrate-html5/index.html;
+    license = licenses.mit;
+    maintainers = [ maintainers.bzizou ];
+    platforms = platforms.unix;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 33464ab30a4..d8e1e626c29 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21656,6 +21656,8 @@ in
 
   kallisto = callPackage ../applications/science/biology/kallisto { };
 
+  migrate = callPackage ../applications/science/biology/migrate { };
+
   mirtk = callPackage ../development/libraries/science/biology/mirtk { };
 
   muscle = callPackage ../applications/science/biology/muscle { };