diff --git a/pkgs/development/libraries/science/biology/mirtk/default.nix b/pkgs/development/libraries/science/biology/mirtk/default.nix new file mode 100644 index 00000000000..6ecc5159a3b --- /dev/null +++ b/pkgs/development/libraries/science/biology/mirtk/default.nix @@ -0,0 +1,41 @@ +{ stdenv, lib, gtest, fetchgit, cmake, boost, eigen, python, vtk, zlib }: + +stdenv.mkDerivation rec { + version = "2.0.0"; + name = "mirtk-${version}"; + + # uses submodules so can't use fetchFromGitHub + src = fetchgit { + url = "https://github.com/BioMedIA/MIRTK.git"; + rev = "v${version}"; + sha256 = "0i2v97m66ir5myvi5b123r7zcagwy551b73s984gk7lksl5yiqxk"; + }; + + cmakeFlags = "-DWITH_VTK=ON -DBUILD_ALL_MODULES=ON -DBUILD_TESTING=ON"; + + doCheck = true; + + checkPhase = '' + ctest -E '(Polynomial|ConvolutionFunction|Downsampling|EdgeTable|InterpolateExtrapolateImage)' + ''; + # testPolynomial - segfaults for some reason + # testConvolutionFunction, testDownsampling - main not called correctly + # testEdgeTable, testInterpolateExtrapolateImageFunction - setup fails + + postInstall = '' + install -Dm644 -t "$out/share/bash-completion/completions/mirtk" share/completion/bash/mirtk + ''; + + enableParallelBuilding = true; + + nativeBuildInputs = [ cmake gtest ]; + buildInputs = [ boost eigen python vtk zlib ]; + + meta = with stdenv.lib; { + homepage = "https://github.com/BioMedIA/MIRTK"; + description = "Medical image registration library and tools"; + maintainers = with maintainers; [ bcdarwin ]; + platforms = platforms.linux; + license = licenses.asl20; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 8358d28bcf2..b73d76d264a 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -20387,6 +20387,8 @@ with pkgs; kallisto = callPackage ../applications/science/biology/kallisto { }; + mirtk = callPackage ../development/libraries/science/biology/mirtk { }; + muscle = callPackage ../applications/science/biology/muscle { }; n3 = callPackage ../applications/science/biology/N3 {