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htslib: fix up

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This commit is contained in:
Orivej Desh 2017-10-01 07:12:52 +00:00
parent bebccf176e
commit 0acf94bb9f
1 changed files with 8 additions and 9 deletions
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17
pkgs/development/libraries/science/biology/htslib/default.nix
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@ -2,16 +2,16 @@
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
name = "${pname}-${version}"; name = "${pname}-${version}";
version = "${major}.0";
pname = "htslib"; pname = "htslib";
major = "1.6"; version = "1.6";
src = fetchurl { src = fetchurl {
url = "https://github.com/samtools/htslib/releases/download/${major}/htslib-${major}.tar.bz2"; url = "https://github.com/samtools/htslib/releases/download/${version}/${name}.tar.bz2";
sha256 = "1jsca3hg4rbr6iqq6imkj4lsvgl8g9768bcmny3hlff2w25vx24m"; sha256 = "1jsca3hg4rbr6iqq6imkj4lsvgl8g9768bcmny3hlff2w25vx24m";
}; };
propagatedNativeBuildInputs = [ perl ]; # perl is only used during the check phase.
nativeBuildInputs = [ perl ];
buildInputs = [ zlib bzip2 lzma curl ]; buildInputs = [ zlib bzip2 lzma curl ];
@ -19,14 +19,14 @@ stdenv.mkDerivation rec {
installFlags = "prefix=$(out)"; installFlags = "prefix=$(out)";
preCheck = ''
patchShebangs test/
'';
enableParallelBuilding = true; enableParallelBuilding = true;
doCheck = true; doCheck = true;
preCheck = ''
find test -name "*.pl" -exec sed -ie 's|/usr/bin/\(env[[:space:]]\)\{0,1\}perl|${perl}/bin/perl|' {} +
'';
meta = with stdenv.lib; { meta = with stdenv.lib; {
description = "A C library for reading/writing high-throughput sequencing data"; description = "A C library for reading/writing high-throughput sequencing data";
license = licenses.mit; license = licenses.mit;
@ -35,4 +35,3 @@ stdenv.mkDerivation rec {
maintainers = [ maintainers.mimadrid ]; maintainers = [ maintainers.mimadrid ];
}; };
} }